RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PTH2R (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025946

Ensembl transcript IDs: ENSMUST00000027083.7, ENSMUST00000140190.8

Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp CCTTATTCCAGGATTCCAGTCTTCCATCTTAGATCCTCCCACACAGCCAGATCTGCTTGCCCCCATCTGTaGCTGGCTGCTGGTGCTGTG +
Preference number: 4 (lower is better)
Translates to: PYSRIPVFHLRSSHTARSACPHL*LAAGAV
Trigger: CACAGCACCAGCAGCCAGTCACAGATGGGGGCAAGC...AGATCTGGCTGTGTGGGAGGATCTAAGATGGAAGACTGGAATCCTGGAATAAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR TCA 90 bp TTCCATCTTAGATCCTCCCACACAGCCAGATCTGCCAATCCACAGGAACGGAAACCCAGCCTATCGAGATaGAGCCCCACAGGTATTTGG +
Preference number: 4 (lower is better)
Translates to: FHLRSSHTARSANPQERKPSLSR*SPTGIW
Trigger: CCAAATACCTGTGGGGCTTCATCTCGATAGGCTGGG...TTTCCGTTCCTGTGGATTGGCAGATCTGGCTGTGTGGGAGGATCTAAGATGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR TCA 90 bp CCTTATTCCAGGATTCCAGTCTTCCATCTTAGATCCTCCCACACAGCCAGATCTCTTCAGTGTCTAGGGTaGACGCCACTGGCCTGGAAG +
Preference number: 4 (lower is better)
Translates to: PYSRIPVFHLRSSHTARSLQCLG*TPLAWK
Trigger: CTTCCAGGCCAGTGGCGTTCACCCTAGACACTGAAG...AGATCTGGCTGTGTGGGAGGATCTAAGATGGAAGACTGGAATCCTGGAATAAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR GCA 90 bp TTCCATCTTAGATCCTCCCACACAGCCAGATCTGCCAATCCACAGGAACGGAAAAGAGTTCACAGTGCATaGGGATCTCCCACCAGAGCC +
Preference number: 4 (lower is better)
Translates to: FHLRSSHTARSANPQERKRVHSA*GSPTRA
Trigger: GGCTCTGGTGGGAGATCCGCATGCACTGTGAACTCT...TTTCCGTTCCTGTGGATTGGCAGATCTGGCTGTGTGGGAGGATCTAAGATGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR TCA 90 bp TTCCATCTTAGATCCTCCCACACAGCCAGATCTGCCAATCCACAGGAACGGAAACTCTGGGCCAACAAATaGTCCCATCCCATTCTGGGA +
Preference number: 4 (lower is better)
Translates to: FHLRSSHTARSANPQERKLWANK*SHPILG
Trigger: TCCCAGAATGGGATGGGATCATTTGTTGGCCCAGAG...TTTCCGTTCCTGTGGATTGGCAGATCTGGCTGTGTGGGAGGATCTAAGATGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR TCA 90 bp TTCCAGTCTTCCATCTTAGATCCTCCCACACAGCCAGATCTGCCAATCCACAGGCACCAGGACCAGTGTTaGCTTAGCCAGTTTCCTGTA +
Preference number: 4 (lower is better)
Translates to: FQSSILDPPTQPDLPIHRHQDQC*LSQFPV
Trigger: TACAGGAAACTGGCTAAGTCAACACTGGTCCTGGTG...CCTGTGGATTGGCAGATCTGGCTGTGTGGGAGGATCTAAGATGGAAGACTGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR GCA 90 bp TTCCAGTCTTCCATCTTAGATCCTCCCACACAGCCAGATCTGCCAATCCACAGGAAGAAGAGTTCACAGTaGATGCGGATCTCCCACCAG +
Preference number: 4 (lower is better)
Translates to: FQSSILDPPTQPDLPIHRKKSSQ*MRISHQ
Trigger: CTGGTGGGAGATCCGCATGCACTGTGAACTCTTCTT...CCTGTGGATTGGCAGATCTGGCTGTGTGGGAGGATCTAAGATGGAAGACTGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR CCA 90 bp ATGTTTAAGCAATGCCTTATTCCAGGATTCCAGTCTTCCATCTTAGATCCTCCCTGGTATCCGCCAGAGTaGCTCGTGCCACTGCCCAGG +
Preference number: 4 (lower is better)
Translates to: MFKQCLIPGFQSSILDPPWYPPE*LVPLPR
Trigger: CCTGGGCAGTGGCACGAGCCACTCTGGCGGATACCA...GGGAGGATCTAAGATGGAAGACTGGAATCCTGGAATAAGGCATTGCTTAAACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR TCA 90 bp TTCCATCTTAGATCCTCCCACACAGCCAGATCTGCCAATCCACAGGAACGGAAACAGATGGTCCTCCAATaGAGTTCTGAAGGTCACCCT +
Preference number: 4 (lower is better)
Translates to: FHLRSSHTARSANPQERKQMVLQ*SSEGHP
Trigger: AGGGTGACCTTCAGAACTTCATTGGAGGACCATCTG...TTTCCGTTCCTGTGGATTGGCAGATCTGGCTGTGTGGGAGGATCTAAGATGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR GCA 90 bp TTCCATCTTAGATCCTCCCACACAGCCAGATCTGCCAATCCACAGGAACGGAAAGATGGGTTTCTCCCTTaGATCCTTCAGTGTCTAGGG +
Preference number: 4 (lower is better)
Translates to: FHLRSSHTARSANPQERKDGFLP*ILQCLG
Trigger: CCCTAGACACTGAAGGATGCAAGGGAGAAACCCATC...TTTCCGTTCCTGTGGATTGGCAGATCTGGCTGTGTGGGAGGATCTAAGATGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR CCA 90 bp CCTTATTCCAGGATTCCAGTCTTCCATCTTAGATCCTCCCACACAGCCAGATCTCCAGGTAGAGTCACATaGCTGTCGATCTGTCTGCAG +
Preference number: 4 (lower is better)
Translates to: PYSRIPVFHLRSSHTARSPGRVT*LSICLQ
Trigger: CTGCAGACAGATCGACAGCCATGTGACTCTACCTGG...AGATCTGGCTGTGTGGGAGGATCTAAGATGGAAGACTGGAATCCTGGAATAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR GCA 90 bp TTCCATCTTAGATCCTCCCACACAGCCAGATCTGCCAATCCACAGGAACGGAAAGGCCACAACAAATACTaGTGGAAATCCCCAGCCTAT +
Preference number: 4 (lower is better)
Translates to: FHLRSSHTARSANPQERKGHNKY*WKSPAY
Trigger: ATAGGCTGGGGATTTCCAGCAGTATTTGTTGTGGCC...TTTCCGTTCCTGTGGATTGGCAGATCTGGCTGTGTGGGAGGATCTAAGATGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR GCA 90 bp TTCCATCTTAGATCCTCCCACACAGCCAGATCTGCCAATCCACAGGAACGGAAAGCCAGTTTCCTGTACTaGTTTCTCATGTCATGCCCA +
Preference number: 4 (lower is better)
Translates to: FHLRSSHTARSANPQERKASFLY*FLMSCP
Trigger: TGGGCATGACATGAGAAAGCAGTACAGGAAACTGGC...TTTCCGTTCCTGTGGATTGGCAGATCTGGCTGTGTGGGAGGATCTAAGATGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR CCA 90 bp CCTTATTCCAGGATTCCAGTCTTCCATCTTAGATCCTCCCACACAGCCAGATCTGATCCCATCCCATTCTaGGAAGCAATTGCCTTCTCC +
Preference number: 4 (lower is better)
Translates to: PYSRIPVFHLRSSHTARSDPIPF*EAIAFS
Trigger: GGAGAAGGCAATTGCTTCCCAGAATGGGATGGGATC...AGATCTGGCTGTGTGGGAGGATCTAAGATGGAAGACTGGAATCCTGGAATAAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR CCA 90 bp TTCCAGTCTTCCATCTTAGATCCTCCCACACAGCCAGATCTGCCAATCCACAGGAGCCCCACAGGTATTTaGTGTCGGAAAAGAAAGACA +
Preference number: 4 (lower is better)
Translates to: FQSSILDPPTQPDLPIHRSPTGI*CRKRKT
Trigger: TGTCTTTCTTTTCCGACACCAAATACCTGTGGGGCT...CCTGTGGATTGGCAGATCTGGCTGTGTGGGAGGATCTAAGATGGAAGACTGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR GCA 90 bp ATGTTTAAGCAATGCCTTATTCCAGGATTCCAGTCTTCCATCTTAGATCCTCCCTGCATCACCAGAGACTaGAGTGCCTCTACTCCCAGG +
Preference number: 4 (lower is better)
Translates to: MFKQCLIPGFQSSILDPPCITRD*SASTPR
Trigger: CCTGGGAGTAGAGGCACTGCAGTCTCTGGTGATGCA...GGGAGGATCTAAGATGGAAGACTGGAATCCTGGAATAAGGCATTGCTTAAACAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR CCA 90 bp TTCCATCTTAGATCCTCCCACACAGCCAGATCTGCCAATCCACAGGAACGGAAAAGGAGCCAAAAGAGATaGAGTAGCCAACAGTGTACA +
Preference number: 4 (lower is better)
Translates to: FHLRSSHTARSANPQERKRSQKR*SSQQCT
Trigger: TGTACACTGTTGGCTACTCCATCTCTTTTGGCTCCT...TTTCCGTTCCTGTGGATTGGCAGATCTGGCTGTGTGGGAGGATCTAAGATGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR TCA 90 bp CTGAAAATGTTTAAGCAATGCCTTATTCCAGGATTCCAGTCTTCCATCTTAGATTGGGTTTGCCAGAGATaGGCACCAGGCGCGTGCTTG +
Preference number: 4 (lower is better)
Translates to: LKMFKQCLIPGFQSSILDWVCQR*APGACL
Trigger: CAAGCACGCGCCTGGTGCTCATCTCTGGCAAACCCA...ATCTAAGATGGAAGACTGGAATCCTGGAATAAGGCATTGCTTAAACATTTTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR GCA 90 bp ATGTTTAAGCAATGCCTTATTCCAGGATTCCAGTCTTCCATCTTAGATCCTCCCCCATTGGGGGTGCAGTaGCGGAAAGCAACTCCTTTA +
Preference number: 4 (lower is better)
Translates to: MFKQCLIPGFQSSILDPPPLGVQ*RKATPL
Trigger: TAAAGGAGTTGCTTTCCGGCACTGCACCCCCAATGG...GGGAGGATCTAAGATGGAAGACTGGAATCCTGGAATAAGGCATTGCTTAAACAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR GCA 90 bp CTGAAAATGTTTAAGCAATGCCTTATTCCAGGATTCCAGTCTTCCATCTTAGATACGTCCCATTGGGGGTaGAGTGCCGGAAAGCAACTC +
Preference number: 4 (lower is better)
Translates to: LKMFKQCLIPGFQSSILDTSHWG*SAGKQL
Trigger: GAGTTGCTTTCCGGCACTGCACCCCCAATGGGACGT...ATCTAAGATGGAAGACTGGAATCCTGGAATAAGGCATTGCTTAAACATTTTCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR GCA 90 bp CTGAAAATGTTTAAGCAATGCCTTATTCCAGGATTCCAGTCTTCCATCTTAGATAGCCCAGAGAAGGAGTaGGGCTGGCAGACAAACACG +
Preference number: 4 (lower is better)
Translates to: LKMFKQCLIPGFQSSILDSPEKE*GWQTNT
Trigger: CGTGTTTGTCTGCCAGCCGCACTCCTTCTCTGGGCT...ATCTAAGATGGAAGACTGGAATCCTGGAATAAGGCATTGCTTAAACATTTTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR TCA 90 bp ATGTTTAAGCAATGCCTTATTCCAGGATTCCAGTCTTCCATCTTAGATCCTCCCAACCCTGGAAGGAGTTaGAGAAGAGTTCACAGTGCA +
Preference number: 4 (lower is better)
Translates to: MFKQCLIPGFQSSILDPPNPGRS*RRVHSA
Trigger: TGCACTGTGAACTCTTCTTCAACTCCTTCCAGGGTT...GGGAGGATCTAAGATGGAAGACTGGAATCCTGGAATAAGGCATTGCTTAAACAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR GCA 90 bp AACGATCTTTATCTTATTCAGGGTGATATTTATGAGAGAAAGGTAGAGTCAGGCCCGTCAGAATCCAGCTaGGCTCTAACCAGGAGACAG +
Preference number: 4 (lower is better)
Translates to: NDLYLIQGDIYERKVESGPSESS*ALTRRQ
Trigger: CTGTCTCCTGGTTAGAGCGCAGCTGGATTCTGACGG...GCCTGACTCTACCTTTCTCTCATAAATATCACCCTGAATAAGATAAAGATCGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR GCA 90 bp ATGTTTAAGCAATGCCTTATTCCAGGATTCCAGTCTTCCATCTTAGATCCTCCCATTCTGGGAAGCAATTaGCTTCTCCTTCTTGGAGCT +
Preference number: 4 (lower is better)
Translates to: MFKQCLIPGFQSSILDPPILGSN*LLLLGA
Trigger: AGCTCCAAGAAGGAGAAGGCAATTGCTTCCCAGAAT...GGGAGGATCTAAGATGGAAGACTGGAATCCTGGAATAAGGCATTGCTTAAACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR CCA 90 bp ATGTTTAAGCAATGCCTTATTCCAGGATTCCAGTCTTCCATCTTAGATCCTCCCTCTCCTTCTTGGAGCTaGGCTGTGATGTTAAGTTCA +
Preference number: 4 (lower is better)
Translates to: MFKQCLIPGFQSSILDPPSPSWS*AVMLSS
Trigger: TGAACTTAACATCACAGCCCAGCTCCAAGAAGGAGA...GGGAGGATCTAAGATGGAAGACTGGAATCCTGGAATAAGGCATTGCTTAAACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR TCA 90 bp CTGAAAATGTTTAAGCAATGCCTTATTCCAGGATTCCAGTCTTCCATCTTAGATTCATGGCTCTCAGCATaGAGGACACGAACAAATGCA +
Preference number: 4 (lower is better)
Translates to: LKMFKQCLIPGFQSSILDSWLSA*RTRTNA
Trigger: TGCATTTGTTCGTGTCCTTCATGCTGAGAGCCATGA...ATCTAAGATGGAAGACTGGAATCCTGGAATAAGGCATTGCTTAAACATTTTCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR CCA 90 bp CTGAAAATGTTTAAGCAATGCCTTATTCCAGGATTCCAGTCTTCCATCTTAGATTTGCCTTCTCCTTCTTaGAGCTGGGCTGTGATGTTA +
Preference number: 4 (lower is better)
Translates to: LKMFKQCLIPGFQSSILDLPSPS*SWAVML
Trigger: TAACATCACAGCCCAGCTCCAAGAAGGAGAAGGCAA...ATCTAAGATGGAAGACTGGAATCCTGGAATAAGGCATTGCTTAAACATTTTCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR TCA 90 bp AACGATCTTTATCTTATTCAGGGTGATATTTATGAGAGAAAGGTAGAGTCAGGCCTTGCTTTCCTATGTTaGTATCAGGCTGCAGAAAGC +
Preference number: 4 (lower is better)
Translates to: NDLYLIQGDIYERKVESGLAFLC*YQAAES
Trigger: GCTTTCTGCAGCCTGATATCAACATAGGAAAGCAAG...GCCTGACTCTACCTTTCTCTCATAAATATCACCCTGAATAAGATAAAGATCGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR CCA 90 bp AACGATCTTTATCTTATTCAGGGTGATATTTATGAGAGAAAGGTAGAGTCAGGCGACACGAAGAAACCCTaGAAGGAGTTGAAGAAGAGT +
Preference number: 4 (lower is better)
Translates to: NDLYLIQGDIYERKVESGDTKKP*KELKKS
Trigger: ACTCTTCTTCAACTCCTTCCAGGGTTTCTTCGTGTC...GCCTGACTCTACCTTTCTCTCATAAATATCACCCTGAATAAGATAAAGATCGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR TCA 90 bp AACGATCTTTATCTTATTCAGGGTGATATTTATGAGAGAAAGGTAGAGTCAGGCAGCCCAGGTTTTATTTaGGCCATGAATAGAATCCCA +
Preference number: 4 (lower is better)
Translates to: NDLYLIQGDIYERKVESGSPGFI*AMNRIP
Trigger: TGGGATTCTATTCATGGCTCAAATAAAACCTGGGCT...GCCTGACTCTACCTTTCTCTCATAAATATCACCCTGAATAAGATAAAGATCGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS TCA 90 bp GGCTGTCGATCTGTCTGCAGGCATTCTTGGTGGGTTTGCCAGAGATaGGCACCAGGCGCGTGCTTGCCCCCATCTGTGACTGGCTGCTGG +
Preference number: 5 (lower is better)
Translates to: GCRSVCRHSWWVCQR*APGACLPPSVTGCW
Trigger: CCAGCAGCCAGTCACAGATGGGGGCAAGCACGCGCCTGGTGCTCATCTCTGGCAAACCCACCAAGAATGCCTGCAGACAGATCGACAGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR CAA 90 bp TTCCAGTCTTCCATCTTAGATCCTCCCACACAGCCAGATCTGCCAATCCACAGGGCACCAGGCGCGTGCTaGCCCCCATCTGTGACTGGC +
Preference number: 5 (lower is better)
Translates to: FQSSILDPPTQPDLPIHRAPGAC*PPSVTG
Trigger: GCCAGTCACAGATGGGGGCAAGCACGCGCCTGGTGC...CCTGTGGATTGGCAGATCTGGCTGTGTGGGAGGATCTAAGATGGAAGACTGGAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS GCA 90 bp TCCAGCACTAAGTTCCCAACACCTGGTATCCGCCAGAGTGGCTCGTaGCACTGCCCAGGCCACAACAAATACTGCTGGAAATCCCCAGCC +
Preference number: 5 (lower is better)
Translates to: SSTKFPTPGIRQSGS*HCPGHNKYCWKSPA
Trigger: GGCTGGGGATTTCCAGCAGTATTTGTTGTGGCCTGGGCAGTGGCACGAGCCACTCTGGCGGATACCAGGTGTTGGGAACTTAGTGCTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS CCA 90 bp AGCCGTACCTTTGGCCGCCACAAGGCGGCGCCCTTTTCCAGTCGATaGACAGATTCCATCGAGTCCACATCTTCTTCACCTCAGCCTGCA +
Preference number: 5 (lower is better)
Translates to: SRTFGRHKAAPFSSR*TDSIESTSSSPQPA
Trigger: TGCAGGCTGAGGTGAAGAAGATGTGGACTCGATGGAATCTGTCCATCGACTGGAAAAGGGCGCCGCCTTGTGGCGGCCAAAGGTACGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS TCA 90 bp ACGTCCCATTGGGGGTGCAGTGCCGGAAAGCAACTCCTTTATGATTaGAGTCGTAAACATACGGAGGGCAAGGCACAGCTGACATTTTCC +
Preference number: 5 (lower is better)
Translates to: TSHWGCSAGKQLLYD*SRKHTEGKAQLTFS
Trigger: GGAAAATGTCAGCTGTGCCTTGCCCTCCGTATGTTTACGACTTCAATCATAAAGGAGTTGCTTTCCGGCACTGCACCCCCAATGGGACGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027083.7
ENSMUST00000140190.8
CDS TCA 90 bp TCTTGCACCCCACATACTGAGATTTGTCCACAGATGGTCCTCCAATaGAGTTCTGAAGGTCACCCTGCATCACCAGAGACTGCAGTGCCT +
Preference number: 5 (lower is better)
Translates to: SCTPHTEICPQMVLQ*SSEGHPASPETAVP
Trigger: AGGCACTGCAGTCTCTGGTGATGCAGGGTGACCTTCAGAACTTCATTGGAGGACCATCTGTGGACAAATCTCAGTATGTGGGGTGCAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS CCA 90 bp TTTCCCCACTGTTCCTCTGGGCCAACAAATGATCCCATCCCATTCTaGGAAGCAATTGCCTTCTCCTTCTTGGAGCTGGGCTGTGATGTT +
Preference number: 5 (lower is better)
Translates to: FPHCSSGPTNDPIPF*EAIAFSFLELGCDV
Trigger: AACATCACAGCCCAGCTCCAAGAAGGAGAAGGCAATTGCTTCCCAGAATGGGATGGGATCATTTGTTGGCCCAGAGGAACAGTGGGGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027083.7
ENSMUST00000140190.8
CDS CCA 90 bp CACGACAGCGATCTTGCACCCCACATACTGAGATTTGTCCACAGATaGTCCTCCAATGAAGTTCTGAAGGTCACCCTGCATCACCAGAGA +
Preference number: 5 (lower is better)
Translates to: HDSDLAPHILRFVHR*SSNEVLKVTLHHQR
Trigger: TCTCTGGTGATGCAGGGTGACCTTCAGAACTTCATTGGAGGACCATCTGTGGACAAATCTCAGTATGTGGGGTGCAAGATCGCTGTCGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR CAA 90 bp TTCCAGTCTTCCATCTTAGATCCTCCCACACAGCCAGATCTGCCAATCCACAGGCATTCTGGGAAGCAATaGCCTTCTCCTTCTTGGAGC +
Preference number: 5 (lower is better)
Translates to: FQSSILDPPTQPDLPIHRHSGKQ*PSPSWS
Trigger: GCTCCAAGAAGGAGAAGGCAATTGCTTCCCAGAATG...CCTGTGGATTGGCAGATCTGGCTGTGTGGGAGGATCTAAGATGGAAGACTGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS TCA 90 bp AAGGCACAGCTGACATTTTCCCCACTGTTCCTCTGGGCCAACAAATaGTCCCATCCCATTCTGGGAAGCAATTGCCTTCTCCTTCTTGGA +
Preference number: 5 (lower is better)
Translates to: KAQLTFSPLFLWANK*SHPILGSNCLLLLG
Trigger: TCCAAGAAGGAGAAGGCAATTGCTTCCCAGAATGGGATGGGATCATTTGTTGGCCCAGAGGAACAGTGGGGAAAATGTCAGCTGTGCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027083.7
ENSMUST00000140190.8
CDS GCA 90 bp AGAACAATCTGCTCTTCTATAGTGATGGTGCCGTCAGAATCCAGCTaGGCTCTAACCAGGAGACAGCTACTGAGAATCAGCCATCCACAA +
Preference number: 5 (lower is better)
Translates to: RTICSSIVMVPSESS*ALTRRQLLRISHPQ
Trigger: TTGTGGATGGCTGATTCTCAGTAGCTGTCTCCTGGTTAGAGCGCAGCTGGATTCTGACGGCACCATCACTATAGAAGAGCAGATTGTTCT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR CAA 90 bp TTCCATCTTAGATCCTCCCACACAGCCAGATCTGCCAATCCACAGGAACGGAAAAAACCCTGGAAGGAGTaGAAGAAGAGTTCACAGTGC +
Preference number: 5 (lower is better)
Translates to: FHLRSSHTARSANPQERKKPWKE*KKSSQC
Trigger: GCACTGTGAACTCTTCTTCAACTCCTTCCAGGGTTT...TTTCCGTTCCTGTGGATTGGCAGATCTGGCTGTGTGGGAGGATCTAAGATGGAA
49% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS TCA 90 bp TCCTTTATGATTGAAGTCGTAAACATACGGAGGGCAAGGCACAGCTaGCATTTTCCCCACTGTTCCTCTGGGCCAACAAATGATCCCATC +
Preference number: 5 (lower is better)
Translates to: SFMIEVVNIRRARHS*HFPHCSSGPTNDPI
Trigger: GATGGGATCATTTGTTGGCCCAGAGGAACAGTGGGGAAAATGTCAGCTGTGCCTTGCCCTCCGTATGTTTACGACTTCAATCATAAAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027083.7
ENSMUST00000140190.8
CDS TCA 90 bp AAACACGATGTAATGCACGCCAAATACCAGCACCAGGACCAGTGTTaGCTTAGCCAGTTTCCTGTACTGCTTTCTCATGTCATGCCCAAC +
Preference number: 5 (lower is better)
Translates to: KHDVMHAKYQHQDQC*LSQFPVLLSHVMPN
Trigger: GTTGGGCATGACATGAGAAAGCAGTACAGGAAACTGGCTAAGTCAACACTGGTCCTGGTGCTGGTATTTGGCGTGCATTACATCGTGTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR CAA 90 bp CCTTATTCCAGGATTCCAGTCTTCCATCTTAGATCCTCCCACACAGCCAGATCTTCATGCCCAACCGCATaGGTTTCCCAAATTTTGGTA +
Preference number: 5 (lower is better)
Translates to: PYSRIPVFHLRSSHTARSSCPTA*VSQILV
Trigger: TACCAAAATTTGGGAAACCAATGCGGTTGGGCATGA...AGATCTGGCTGTGTGGGAGGATCTAAGATGGAAGACTGGAATCCTGGAATAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR CAA 90 bp CCTTATTCCAGGATTCCAGTCTTCCATCTTAGATCCTCCCACACAGCCAGATCTTCTTGCTTTCCTATGTaGATATCAGGCTGCAGAAAG +
Preference number: 5 (lower is better)
Translates to: PYSRIPVFHLRSSHTARSSCFPM*ISGCRK
Trigger: CTTTCTGCAGCCTGATATCAACATAGGAAAGCAAGA...AGATCTGGCTGTGTGGGAGGATCTAAGATGGAAGACTGGAATCCTGGAATAAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS GCA 90 bp ACCAGTGTTGACTTAGCCAGTTTCCTGTACTGCTTTCTCATGTCATaGCCAACCGCATTGGTTTCCCAAATTTTGGTAGCAAGAACTCTA +
Preference number: 5 (lower is better)
Translates to: TSVDLASFLYCFLMS*PTALVSQILVARTL
Trigger: TAGAGTTCTTGCTACCAAAATTTGGGAAACCAATGCGGTTGGGCATGACATGAGAAAGCAGTACAGGAAACTGGCTAAGTCAACACTGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS GCA 90 bp ATGTTAAGTTCACACTGCATTTTAGCCTTCATAACAAGAACAATCTaGTCTTCTATAGTGATGGTGCCGTCAGAATCCAGCTGCGCTCTA +
Preference number: 5 (lower is better)
Translates to: MLSSHCILAFITRTI*SSIVMVPSESSCAL
Trigger: TAGAGCGCAGCTGGATTCTGACGGCACCATCACTATAGAAGAGCAGATTGTTCTTGTTATGAAGGCTAAAATGCAGTGTGAACTTAACAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS GCA 90 bp TTGCCTTCTCCTTCTTGGAGCTGGGCTGTGATGTTAAGTTCACACTaGATTTTAGCCTTCATAACAAGAACAATCTGCTCTTCTATAGTG +
Preference number: 5 (lower is better)
Translates to: LPSPSWSWAVMLSSH*ILAFITRTICSSIV
Trigger: CACTATAGAAGAGCAGATTGTTCTTGTTATGAAGGCTAAAATGCAGTGTGAACTTAACATCACAGCCCAGCTCCAAGAAGGAGAAGGCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027083.7
ENSMUST00000140190.8
CDS-3UTR CAA 90 bp CTGAAAATGTTTAAGCAATGCCTTATTCCAGGATTCCAGTCTTCCATCTTAGATATTGCCTTCTCCTTCTaGGAGCTGGGCTGTGATGTT +
Preference number: 5 (lower is better)
Translates to: LKMFKQCLIPGFQSSILDIAFSF*ELGCDV
Trigger: AACATCACAGCCCAGCTCCAAGAAGGAGAAGGCAAT...ATCTAAGATGGAAGACTGGAATCCTGGAATAAGGCATTGCTTAAACATTTTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR CAA 90 bp AACGATCTTTATCTTATTCAGGGTGATATTTATGAGAGAAAGGTAGAGTCAGGCTGGGCTACTCTGTCCTaGACAAAGATGCTCATGGCT +
Preference number: 5 (lower is better)
Translates to: NDLYLIQGDIYERKVESGWATLS*TKMLMA
Trigger: AGCCATGAGCATCTTTGTCAAGGACAGAGTAGCCCA...GCCTGACTCTACCTTTCTCTCATAAATATCACCCTGAATAAGATAAAGATCGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR CAA 90 bp AACGATCTTTATCTTATTCAGGGTGATATTTATGAGAGAAAGGTAGAGTCAGGCAAGCCCCACAGGTATTaGGTGTCGGAAAAGAAAGAC +
Preference number: 5 (lower is better)
Translates to: NDLYLIQGDIYERKVESGKPHRY*VSEKKD
Trigger: GTCTTTCTTTTCCGACACCAAATACCTGTGGGGCTT...GCCTGACTCTACCTTTCTCTCATAAATATCACCCTGAATAAGATAAAGATCGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS GCA 90 bp ATGTTAAGTTCACACTGCATTTTAGCCTTCATAACAAGAACAATCTaGTCTTCTATAGTGATGGTGCCGTCAGAATCCAGTTCACAGTTC +
Preference number: 5 (lower is better)
Translates to: MLSSHCILAFITRTI*SSIVMVPSESSSQF
Trigger: GAACTGTGAACTGGATTCTGACGGCACCATCACTATAGAAGAGCAGATTGTTCTTGTTATGAAGGCTAAAATGCAGTGTGAACTTAACAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140190.8
CDS-3UTR CAA 90 bp ATGTTTAAGCAATGCCTTATTCCAGGATTCCAGTCTTCCATCTTAGATCCTCCCGCTTTCAAAGAACTCTaGCTTTCCTATGTTGATATC +
Preference number: 5 (lower is better)
Translates to: MFKQCLIPGFQSSILDPPAFKEL*LSYVDI
Trigger: GATATCAACATAGGAAAGCAAGAGTTCTTTGAAAGC...GGGAGGATCTAAGATGGAAGACTGGAATCCTGGAATAAGGCATTGCTTAAACAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS-3UTR CAA 90 bp ATGTTTAAGCAATGCCTTATTCCAGGATTCCAGTCTTCCATCTTAGATCCTCCCTTGGTTTCCCAAATTTaGGTAGCAAGAACTCTAACT +
Preference number: 5 (lower is better)
Translates to: MFKQCLIPGFQSSILDPPLVSQI*VARTLT
Trigger: AGTTAGAGTTCTTGCTACCAAAATTTGGGAAACCAA...GGGAGGATCTAAGATGGAAGACTGGAATCCTGGAATAAGGCATTGCTTAAACAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS CAA 72 bp GCTGTGAGTGACAGTGGTGAGCACCGAGCCGTACCTTaGGCCGCCACAAGGCGGCGCCCTTTTCCAGTCGAT +
Preference number: 6 (lower is better)
Translates to: AVSDSGEHRAVP*AATRRRPFPVD
Trigger: ATCGACTGGAAAAGGGCGCCGCCTTGTGGCGGCCAAAGGTACGGCTCGGTGCTCACCACTGTCACTCACAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS CAA 72 bp TGGCTGTCGATCTGTCTGCAGGCATTCTTGGTGGGTTaGCCAGAGATGAGCACCAGGCGCGTGCTTGCCCCC +
Preference number: 6 (lower is better)
Translates to: WLSICLQAFLVG*PEMSTRRVLAP
Trigger: GGGGGCAAGCACGCGCCTGGTGCTCATCTCTGGCAAACCCACCAAGAATGCCTGCAGACAGATCGACAGCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS CAA 90 bp AGAGTCACATGGCTGTCGATCTGTCTGCAGGCATTCTTGGTGGGTTaGCCAGAGATGAGCACCAGGCGCGTGCTTGCCCCCATCTGTGAC +
Preference number: 6 (lower is better)
Translates to: RVTWLSICLQAFLVG*PEMSTRRVLAPICD
Trigger: GTCACAGATGGGGGCAAGCACGCGCCTGGTGCTCATCTCTGGCAAACCCACCAAGAATGCCTGCAGACAGATCGACAGCCATGTGACTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS TCA 72 bp TCTGTCTGCAGGCATTCTTGGTGGGTTTGCCAGAGATaGGCACCAGGCGCGTGCTTGCCCCCATCTGTGACT +
Preference number: 6 (lower is better)
Translates to: SVCRHSWWVCQR*APGACLPPSVT
Trigger: AGTCACAGATGGGGGCAAGCACGCGCCTGGTGCTCATCTCTGGCAAACCCACCAAGAATGCCTGCAGACAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS CAA 72 bp AGAGTCACATGGCTGTCGATCTGTCTGCAGGCATTCTaGGTGGGTTTGCCAGAGATGAGCACCAGGCGCGTG +
Preference number: 6 (lower is better)
Translates to: RVTWLSICLQAF*VGLPEMSTRRV
Trigger: CACGCGCCTGGTGCTCATCTCTGGCAAACCCACCAAGAATGCCTGCAGACAGATCGACAGCCATGTGACTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS TCA 72 bp GATGGGTTTCTCCCTTGCATCCTTCAGTGTCTAGGGTaGACGCCACTGGCCTGGAAGACTCCATCACTGGAC +
Preference number: 6 (lower is better)
Translates to: DGFLPCILQCLG*TPLAWKTPSLD
Trigger: GTCCAGTGATGGAGTCTTCCAGGCCAGTGGCGTTCACCCTAGACACTGAAGGATGCAAGGGAGAAACCCATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS CCA 72 bp TTTGGCCGCCACAAGGCGGCGCCCTTTTCCAGTCGATaGACAGATTCCATCGAGTCCACATCTTCTTCACCT +
Preference number: 6 (lower is better)
Translates to: FGRHKAAPFSSR*TDSIESTSSSP
Trigger: AGGTGAAGAAGATGTGGACTCGATGGAATCTGTCCATCGACTGGAAAAGGGCGCCGCCTTGTGGCGGCCAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS TCA 72 bp TGGGGGTGCAGTGCCGGAAAGCAACTCCTTTATGATTaGAGTCGTAAACATACGGAGGGCAAGGCACAGCTG +
Preference number: 6 (lower is better)
Translates to: WGCSAGKQLLYD*SRKHTEGKAQL
Trigger: CAGCTGTGCCTTGCCCTCCGTATGTTTACGACTTCAATCATAAAGGAGTTGCTTTCCGGCACTGCACCCCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027083.7
ENSMUST00000140190.8
CDS GCA 72 bp AAGAAACCCTGGAAGGAGTTGAAGAAGAGTTCACAGTaGATGCGGATCTCCCACCAGAGCCCAGAGAAGGAG +
Preference number: 6 (lower is better)
Translates to: KKPWKELKKSSQ*MRISHQSPEKE
Trigger: CTCCTTCTCTGGGCTCTGGTGGGAGATCCGCATGCACTGTGAACTCTTCTTCAACTCCTTCCAGGGTTTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS CCA 72 bp TGTTCCTCTGGGCCAACAAATGATCCCATCCCATTCTaGGAAGCAATTGCCTTCTCCTTCTTGGAGCTGGGC +
Preference number: 6 (lower is better)
Translates to: CSSGPTNDPIPF*EAIAFSFLELG
Trigger: GCCCAGCTCCAAGAAGGAGAAGGCAATTGCTTCCCAGAATGGGATGGGATCATTTGTTGGCCCAGAGGAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027083.7
ENSMUST00000140190.8
CDS TCA 72 bp CTGACATTTTCCCCACTGTTCCTCTGGGCCAACAAATaGTCCCATCCCATTCTGGGAAGCAATTGCCTTCTC +
Preference number: 6 (lower is better)
Translates to: LTFSPLFLWANK*SHPILGSNCLL
Trigger: GAGAAGGCAATTGCTTCCCAGAATGGGATGGGATCATTTGTTGGCCCAGAGGAACAGTGGGGAAAATGTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027083.7
ENSMUST00000140190.8
CDS TCA 72 bp GTAATGCACGCCAAATACCAGCACCAGGACCAGTGTTaGCTTAGCCAGTTTCCTGTACTGCTTTCTCATGTC +
Preference number: 6 (lower is better)
Translates to: VMHAKYQHQDQC*LSQFPVLLSHV
Trigger: GACATGAGAAAGCAGTACAGGAAACTGGCTAAGTCAACACTGGTCCTGGTGCTGGTATTTGGCGTGCATTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS CCA 72 bp GATCTTGCACCCCACATACTGAGATTTGTCCACAGATaGTCCTCCAATGAAGTTCTGAAGGTCACCCTGCAT +
Preference number: 6 (lower is better)
Translates to: DLAPHILRFVHR*SSNEVLKVTLH
Trigger: ATGCAGGGTGACCTTCAGAACTTCATTGGAGGACCATCTGTGGACAAATCTCAGTATGTGGGGTGCAAGATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS TCA 72 bp ATAAACATCACGACAGCGATCTTGCACCCCACATACTaGGATTTGTCCACAGATGGTCCTCCAATGAAGTTC +
Preference number: 6 (lower is better)
Translates to: INITTAILHPTY*DLSTDGPPMKF
Trigger: GAACTTCATTGGAGGACCATCTGTGGACAAATCTCAGTATGTGGGGTGCAAGATCGCTGTCGTGATGTTTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS CAA 90 bp TTAGCCAGTTTCCTGTACTGCTTTCTCATGTCATGCCCAACCGCATaGGTTTCCCAAATTTTGGTAGCAAGAACTCTAACTGTATTCAGG +
Preference number: 6 (lower is better)
Translates to: LASFLYCFLMSCPTA*VSQILVARTLTVFR
Trigger: CCTGAATACAGTTAGAGTTCTTGCTACCAAAATTTGGGAAACCAATGCGGTTGGGCATGACATGAGAAAGCAGTACAGGAAACTGGCTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS GCA 72 bp TCACACTGCATTTTAGCCTTCATAACAAGAACAATCTaGTCTTCTATAGTGATGGTGCCGTCAGAATCCAGC +
Preference number: 6 (lower is better)
Translates to: SHCILAFITRTI*SSIVMVPSESS
Trigger: GCTGGATTCTGACGGCACCATCACTATAGAAGAGCAGATTGTTCTTGTTATGAAGGCTAAAATGCAGTGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS GCA 72 bp CCTTCTTGGAGCTGGGCTGTGATGTTAAGTTCACACTaGATTTTAGCCTTCATAACAAGAACAATCTGCTCT +
Preference number: 6 (lower is better)
Translates to: PSWSWAVMLSSH*ILAFITRTICS
Trigger: AGAGCAGATTGTTCTTGTTATGAAGGCTAAAATGCAGTGTGAACTTAACATCACAGCCCAGCTCCAAGAAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027083.7
ENSMUST00000140190.8
CDS CAA 72 bp CTCATGTCATGCCCAACCGCATTGGTTTCCCAAATTTaGGTAGCAAGAACTCTAACTGTATTCAGGAACAGA +
Preference number: 6 (lower is better)
Translates to: LMSCPTALVSQI*VARTLTVFRNR
Trigger: TCTGTTCCTGAATACAGTTAGAGTTCTTGCTACCAAAATTTGGGAAACCAATGCGGTTGGGCATGACATGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS CAA 72 bp TTCCTGTACTGCTTTCTCATGTCATGCCCAACCGCATaGGTTTCCCAAATTTTGGTAGCAAGAACTCTAACT +
Preference number: 6 (lower is better)
Translates to: FLYCFLMSCPTA*VSQILVARTLT
Trigger: AGTTAGAGTTCTTGCTACCAAAATTTGGGAAACCAATGCGGTTGGGCATGACATGAGAAAGCAGTACAGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7
CDS GCA 72 bp TCACACTGCATTTTAGCCTTCATAACAAGAACAATCTaGTCTTCTATAGTGATGGTGCCGTCAGAATCCAGT +
Preference number: 6 (lower is better)
Translates to: SHCILAFITRTI*SSIVMVPSESS
Trigger: ACTGGATTCTGACGGCACCATCACTATAGAAGAGCAGATTGTTCTTGTTATGAAGGCTAAAATGCAGTGTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140190.8
CDS CAA 90 bp TACTGCTTTCTCATGTCATGCCCAACCGCATTGGTTTCCCAAATTTaGGTAGCAAGAACTCTAACTGTATTCAGGAACAGAATAAAATTC +
Preference number: 6 (lower is better)
Translates to: YCFLMSCPTALVSQI*VARTLTVFRNRIKF
Trigger: GAATTTTATTCTGTTCCTGAATACAGTTAGAGTTCTTGCTACCAAAATTTGGGAAACCAATGCGGTTGGGCATGACATGAGAAAGCAGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027083.7