RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PTGIR (Mus musculus)

Ensembl gene IDs: ENSMUSG00000043017

Ensembl transcript IDs: ENSMUST00000086101.6, ENSMUST00000144408.2

Found 201 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CAGGAGCACTGGCTTGCCCTCCCGCATGCAGCCCGGCCCTCCAGCTaGCTCACTTCCCCTCATGCCAGGCAGCTCATTTCCACGCACCCA +
Preference number: 1 (lower is better)
Translates to: QEHWLALPHAARPSS*LTSPHARQLISTHP
Trigger: TGGGTGCGTGGAAATGAGCTGCCTGGCATGAGGGGAAGTGAGTCAGCTGGAGGGCCGGGCTGCATGCGGGAGGGCAAGCCAGTGCTCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR GCA 90 bp GAACCAGGAGAAACATCAGCAGGAGCACTGGCTTGCCCTCCCGCATaGAGCCCGGCCCTCCAGCTGACTCACTTCCCCTCATGCCAGGCA +
Preference number: 1 (lower is better)
Translates to: EPGETSAGALACPPA*SPALQLTHFPSCQA
Trigger: TGCCTGGCATGAGGGGAAGTGAGTCAGCTGGAGGGCCGGGCTGCATGCGGGAGGGCAAGCCAGTGCTCCTGCTGATGTTTCTCCTGGTTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR GCA 90 bp CCTCCCGCATGCAGCCCGGCCCTCCAGCTGACTCACTTCCCCTCATaGCAGGCAGCTCATTTCCACGCACCCAGGATTCTTTGCTTGGAG +
Preference number: 1 (lower is better)
Translates to: PPACSPALQLTHFPS*QAAHFHAPRILCLE
Trigger: CTCCAAGCAAAGAATCCTGGGTGCGTGGAAATGAGCTGCCTGGCATGAGGGGAAGTGAGTCAGCTGGAGGGCCGGGCTGCATGCGGGAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR GCA 90 bp GCTGAGAAACAGGAACCAGGAGAAACATCAGCAGGAGCACTGGCTTaGCCTCCCGCATGCAGCCCGGCCCTCCAGCTGACTCACTTCCCC +
Preference number: 1 (lower is better)
Translates to: AEKQEPGETSAGALA*PPACSPALQLTHFP
Trigger: GGGGAAGTGAGTCAGCTGGAGGGCCGGGCTGCATGCGGGAGGGCAAGCCAGTGCTCCTGCTGATGTTTCTCCTGGTTCCTGTTTCTCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR GCA 90 bp TTCCCCTCATGCCAGGCAGCTCATTTCCACGCACCCAGGATTCTTTaGTTGGAGGCCTGGGACTTTTCTGCGACCCTGATCCGAGGGAGG +
Preference number: 1 (lower is better)
Translates to: FPSCQAAHFHAPRIL*LEAWDFSATLIRGR
Trigger: CCTCCCTCGGATCAGGGTCGCAGAAAAGTCCCAGGCCTCCAAGCAAAGAATCCTGGGTGCGTGGAAATGAGCTGCCTGGCATGAGGGGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR CCA 90 bp CAGGCAGCTCATTTCCACGCACCCAGGATTCTTTGCTTGGAGGCCTaGGACTTTTCTGCGACCCTGATCCGAGGGAGGAAGAGTGAGTGC +
Preference number: 1 (lower is better)
Translates to: QAAHFHAPRILCLEA*DFSATLIRGRKSEC
Trigger: GCACTCACTCTTCCTCCCTCGGATCAGGGTCGCAGAAAAGTCCCAGGCCTCCAAGCAAAGAATCCTGGGTGCGTGGAAATGAGCTGCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR CCA 90 bp CCAAGCTTGGGCTTTGCCCTCTCTGGGCCCTGGTTCCACTTTCTCTaGAGAGGCTTTGCTAATATGCTGCCGAGCAGATGGAGTGGGAGG +
Preference number: 1 (lower is better)
Translates to: PSLGFALSGPWFHFL*RGFANMLPSRWSGR
Trigger: CCTCCCACTCCATCTGCTCGGCAGCATATTAGCAAAGCCTCTCCAGAGAAAGTGGAACCAGGGCCCAGAGAGGGCAAAGCCCAAGCTTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR CCA 90 bp AGGCACAGAGAGGCCGTGAGAAAGTTCTGCTGTGTGGTCCAAGCTTaGGCTTTGCCCTCTCTGGGCCCTGGTTCCACTTTCTCTGGAGAG +
Preference number: 1 (lower is better)
Translates to: RHREAVRKFCCVVQA*ALPSLGPGSTFSGE
Trigger: CTCTCCAGAGAAAGTGGAACCAGGGCCCAGAGAGGGCAAAGCCCAAGCTTGGACCACACAGCAGAACTTTCTCACGGCCTCTCTGTGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR GCA 90 bp TGCATCCTAGGAAGCATGCCTGTGAAGTCCTTTGGAGCCTCTGCATaGTACATCACCACCATCTCCGCCTTGTCCCTGTGCCCTCCTCCA +
Preference number: 1 (lower is better)
Translates to: CILGSMPVKSFGASA*YITTISALSLCPPP
Trigger: TGGAGGAGGGCACAGGGACAAGGCGGAGATGGTGGTGATGTAGCATGCAGAGGCTCCAAAGGACTTCACAGGCATGCTTCCTAGGATGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR CCA 90 bp GTTCTGCTGTGTGGTCCAAGCTTGGGCTTTGCCCTCTCTGGGCCCTaGTTCCACTTTCTCTGGAGAGGCTTTGCTAATATGCTGCCGAGC +
Preference number: 1 (lower is better)
Translates to: VLLCGPSLGFALSGP*FHFLWRGFANMLPS
Trigger: GCTCGGCAGCATATTAGCAAAGCCTCTCCAGAGAAAGTGGAACCAGGGCCCAGAGAGGGCAAAGCCCAAGCTTGGACCACACAGCAGAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR CCA 90 bp CAGGCTTGGGACATGCATCCTAGGAAGCATGCCTGTGAAGTCCTTTaGAGCCTCTGCATGCTACATCACCACCATCTCCGCCTTGTCCCT +
Preference number: 1 (lower is better)
Translates to: QAWDMHPRKHACEVL*SLCMLHHHHLRLVP
Trigger: AGGGACAAGGCGGAGATGGTGGTGATGTAGCATGCAGAGGCTCCAAAGGACTTCACAGGCATGCTTCCTAGGATGCATGTCCCAAGCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR CCA 90 bp CACCATACCGAAGGAGGAGAAGCAGCAGCAGACACCCCCAGACTCTaGGGATCAAATATGTGGTTTCTGCTACCGTCAGTTGAGTCCCTG +
Preference number: 1 (lower is better)
Translates to: HHTEGGEAAADTPRL*GSNMWFLLPSVESL
Trigger: CAGGGACTCAACTGACGGTAGCAGAAACCACATATTTGATCCCCAGAGTCTGGGGGTGTCTGCTGCTGCTTCTCCTCCTTCGGTATGGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR TCA 90 bp CCCCAGACTCTGGGGATCAAATATGTGGTTTCTGCTACCGTCAGTTaGGTCCCTGATCTTCTGGCTTCTGGTCCTGTGACAGCGGGCTTA +
Preference number: 1 (lower is better)
Translates to: PQTLGIKYVVSATVS*VPDLLASGPVTAGL
Trigger: TAAGCCCGCTGTCACAGGACCAGAAGCCAGAAGATCAGGGACTCAACTGACGGTAGCAGAAACCACATATTTGATCCCCAGAGTCTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR GCA 90 bp AGGGCCGAGGCGTTGTGGCACACACCTCCACACCCAGCTTACCTCTaGCTGTTTTCTCTTCTCCCGATTCTCTTTGCTTTTTCTGAGTGT +
Preference number: 1 (lower is better)
Translates to: RAEALWHTPPHPAYL*LFSLLPILFAFSEC
Trigger: ACACTCAGAAAAAGCAAAGAGAATCGGGAGAAGAGAAAACAGGCAGAGGTAAGCTGGGTGTGGAGGTGTGTGCCACAACGCCTCGGCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR GCA 90 bp AGACCATTTCTGTGCCAGGCATGTGTCCAGCAATGTCACCTGCAGTaGAGTGGCCCTCCTTTCTTCTCACTTCCTCTTAGGGGTTCAAGA +
Preference number: 1 (lower is better)
Translates to: RPFLCQACVQQCHLQ*SGPPFFSLPLRGSR
Trigger: TCTTGAACCCCTAAGAGGAAGTGAGAAGAAAGGAGGGCCACTGCACTGCAGGTGACATTGCTGGACACATGCCTGGCACAGAAATGGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR GCA 90 bp TTCTCAGACCATTTCTGTGCCAGGCATGTGTCCAGCAATGTCACCTaGAGTGCAGTGGCCCTCCTTTCTTCTCACTTCCTCTTAGGGGTT +
Preference number: 1 (lower is better)
Translates to: FSDHFCARHVSSNVT*SAVALLSSHFLLGV
Trigger: AACCCCTAAGAGGAAGTGAGAAGAAAGGAGGGCCACTGCACTGCAGGTGACATTGCTGGACACATGCCTGGCACAGAAATGGTCTGAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR TCA 90 bp TCTGGGGATCAAATATGTGGTTTCTGCTACCGTCAGTTGAGTCCCTaGTCTTCTGGCTTCTGGTCCTGTGACAGCGGGCTTAGGATGACA +
Preference number: 1 (lower is better)
Translates to: SGDQICGFCYRQLSP*SSGFWSCDSGLRMT
Trigger: TGTCATCCTAAGCCCGCTGTCACAGGACCAGAAGCCAGAAGATCAGGGACTCAACTGACGGTAGCAGAAACCACATATTTGATCCCCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR CCA 90 bp CACCCTCTGTGGCTTCCTTCCAGGTCCTGTGTTAAAGTGTTCTTTTaGGAGAGAGTCCTTTACTCCTCAAGACACCCCTGTCAGATTAGA +
Preference number: 1 (lower is better)
Translates to: HPLWLPSRSCVKVFF*ERVLYSSRHPCQIR
Trigger: TCTAATCTGACAGGGGTGTCTTGAGGAGTAAAGGACTCTCTCCCAAAAGAACACTTTAACACAGGACCTGGAAGGAAGCCACAGAGGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR CCA 90 bp CAGCAACTGGCATCAGATAGTATCTTTCAGTACCTGAGGACTGACTaGTCAACTCAGACTGGTTTGTTTTGTGGTTTTATCTGTTGTTGT +
Preference number: 1 (lower is better)
Translates to: QQLASDSIFQYLRTD*STQTGLFCGFICCC
Trigger: ACAACAACAGATAAAACCACAAAACAAACCAGTCTGAGTTGACCAGTCAGTCCTCAGGTACTGAAAGATACTATCTGATGCCAGTTGCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CCA 90 bp AGGAGAAACATCAGCAGGAGCACTGGCTTGCCCTCCCGCATGCAGCCCGGCCCTATGCCTTGTGTCCCCTaGGGACCTGGGGTGGGCAGC +
Preference number: 2 (lower is better)
Translates to: RRNISRSTGLPSRMQPGPMPCVP*GPGVGS
Trigger: GCTGCCCACCCCAGGTCCCCAGGGGACACAAGGCAT...AGGGCCGGGCTGCATGCGGGAGGGCAAGCCAGTGCTCCTGCTGATGTTTCTCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR TCA 90 bp AGGAGAAACATCAGCAGGAGCACTGGCTTGCCCTCCCGCATGCAGCCCGGCCCTCCGAGGGAGGAAGAGTaGGTGCCTGCTGACTTCAGG +
Preference number: 2 (lower is better)
Translates to: RRNISRSTGLPSRMQPGPPREEE*VPADFR
Trigger: CCTGAAGTCAGCAGGCACTCACTCTTCCTCCCTCGG...AGGGCCGGGCTGCATGCGGGAGGGCAAGCCAGTGCTCCTGCTGATGTTTCTCCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CCA 90 bp CTGATCCGAGGGAGGAAGAGTGAGTGCCTGCTGACTTCAGGGTCCCCCGGGAGTCAGGGGCCCCCTCAGTaGAAGAGGAGAGCAGACACT +
Preference number: 2 (lower is better)
Translates to: LIRGRKSECLLTSGSPGSQGPPQ*KRRADT
Trigger: AGTGTCTGCTCTCCTCTTCCACTGAGGGGGCCCCTG...ACTCCCGGGGGACCCTGAAGTCAGCAGGCACTCACTCTTCCTCCCTCGGATCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR GCA 90 bp AGGAGAAACATCAGCAGGAGCACTGGCTTGCCCTCCCGCATGCAGCCCGGCCCTTCCAGCAATGTCACCTaGAGTGCAGTGGCCCTCCTT +
Preference number: 2 (lower is better)
Translates to: RRNISRSTGLPSRMQPGPSSNVT*SAVALL
Trigger: AAGGAGGGCCACTGCACTGCAGGTGACATTGCTGGA...AGGGCCGGGCTGCATGCGGGAGGGCAAGCCAGTGCTCCTGCTGATGTTTCTCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CCA 90 bp CTGATCCGAGGGAGGAAGAGTGAGTGCCTGCTGACTTCAGGGTCCCCCGGGAGTAGACAGAGAGATGGATaGAGGAGCCCAGGGGCCAGA +
Preference number: 2 (lower is better)
Translates to: LIRGRKSECLLTSGSPGSRQRDG*RSPGAR
Trigger: TCTGGCCCCTGGGCTCCTCCATCCATCTCTCTGTCT...ACTCCCGGGGGACCCTGAAGTCAGCAGGCACTCACTCTTCCTCCCTCGGATCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR GCA 90 bp CTGATCCGAGGGAGGAAGAGTGAGTGCCTGCTGACTTCAGGGTCCCCCGGGAGTTCCGCCTTGTCCCTGTaGCCTCCTCCAAAGTTCACA +
Preference number: 2 (lower is better)
Translates to: LIRGRKSECLLTSGSPGSSALSL*PPPKFT
Trigger: TGTGAACTTTGGAGGAGGGCACAGGGACAAGGCGGA...ACTCCCGGGGGACCCTGAAGTCAGCAGGCACTCACTCTTCCTCCCTCGGATCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CCA 90 bp CTGATCCGAGGGAGGAAGAGTGAGTGCCTGCTGACTTCAGGGTCCCCCGGGAGTATGGGGGCACAGGCTTaGGACATGCATCCTAGGAAG +
Preference number: 2 (lower is better)
Translates to: LIRGRKSECLLTSGSPGSMGAQA*DMHPRK
Trigger: CTTCCTAGGATGCATGTCCCAAGCCTGTGCCCCCAT...ACTCCCGGGGGACCCTGAAGTCAGCAGGCACTCACTCTTCCTCCCTCGGATCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR CAA 90 bp CCCTCATGCCAGGCAGCTCATTTCCACGCACCCAGGATTCTTTGCTaGGAGGCCTGGGACTTTTCTGCGACCCTGATCCGAGGGAGGAAG +
Preference number: 2 (lower is better)
Translates to: PSCQAAHFHAPRILC*EAWDFSATLIRGRK
Trigger: CTTCCTCCCTCGGATCAGGGTCGCAGAAAAGTCCCAGGCCTCCAAGCAAAGAATCCTGGGTGCGTGGAAATGAGCTGCCTGGCATGAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR CAA 90 bp CTTCCCCTCATGCCAGGCAGCTCATTTCCACGCACCCAGGATTCTTaGCTTGGAGGCCTGGGACTTTTCTGCGACCCTGATCCGAGGGAG +
Preference number: 2 (lower is better)
Translates to: LPLMPGSSFPRTQDS*LGGLGLFCDPDPRE
Trigger: CTCCCTCGGATCAGGGTCGCAGAAAAGTCCCAGGCCTCCAAGCAAAGAATCCTGGGTGCGTGGAAATGAGCTGCCTGGCATGAGGGGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR GCA 90 bp AGGAGAAACATCAGCAGGAGCACTGGCTTGCCCTCCCGCATGCAGCCCGGCCCTCTCAGACCATTTCTGTaGCAGGCATGTGTCCAGCAA +
Preference number: 2 (lower is better)
Translates to: RRNISRSTGLPSRMQPGPLRPFL*QACVQQ
Trigger: TTGCTGGACACATGCCTGGCACAGAAATGGTCTGAG...AGGGCCGGGCTGCATGCGGGAGGGCAAGCCAGTGCTCCTGCTGATGTTTCTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CCA 90 bp AGGAGAAACATCAGCAGGAGCACTGGCTTGCCCTCCCGCATGCAGCCCGGCCCTTTCTGCAGAAGTTGCTaGAATGCCTTGTGTCCCCTG +
Preference number: 2 (lower is better)
Translates to: RRNISRSTGLPSRMQPGPFCRSC*NALCPL
Trigger: CAGGGGACACAAGGCATTCCAGCAACTTCTGCAGAA...AGGGCCGGGCTGCATGCGGGAGGGCAAGCCAGTGCTCCTGCTGATGTTTCTCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR CAA 90 bp GAGGCACAGAGAGGCCGTGAGAAAGTTCTGCTGTGTGGTCCAAGCTaGGGCTTTGCCCTCTCTGGGCCCTGGTTCCACTTTCTCTGGAGA +
Preference number: 2 (lower is better)
Translates to: EAQRGREKVLLCGPS*GFALSGPWFHFLWR
Trigger: TCTCCAGAGAAAGTGGAACCAGGGCCCAGAGAGGGCAAAGCCCAAGCTTGGACCACACAGCAGAACTTTCTCACGGCCTCTCTGTGCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR CAA 90 bp GCTTTGCCCTCTCTGGGCCCTGGTTCCACTTTCTCTGGAGAGGCTTaGCTAATATGCTGCCGAGCAGATGGAGTGGGAGGACGAATGACC +
Preference number: 2 (lower is better)
Translates to: ALPSLGPGSTFSGEA*LICCRADGVGGRMT
Trigger: GGTCATTCGTCCTCCCACTCCATCTGCTCGGCAGCATATTAGCAAAGCCTCTCCAGAGAAAGTGGAACCAGGGCCCAGAGAGGGCAAAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR CAA 90 bp AGAGAGGCCGTGAGAAAGTTCTGCTGTGTGGTCCAAGCTTGGGCTTaGCCCTCTCTGGGCCCTGGTTCCACTTTCTCTGGAGAGGCTTTG +
Preference number: 2 (lower is better)
Translates to: REAVRKFCCVVQAWA*PSLGPGSTFSGEAL
Trigger: CAAAGCCTCTCCAGAGAAAGTGGAACCAGGGCCCAGAGAGGGCAAAGCCCAAGCTTGGACCACACAGCAGAACTTTCTCACGGCCTCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR GCA 90 bp GTAAGTTGTTCCAGGATGGGGGCACAGGCTTGGGACATGCATCCTAGGAAGCATGGGGCCAGAGCAGCCTaGCCAGGCCCTGGTTATTTT +
Preference number: 2 (lower is better)
Translates to: VSCSRMGAQAWDMHPRKHGARAA*PGPGYF
Trigger: AAAATAACCAGGGCCTGGGCAGGCTGCTCTGGCCCC...ATGCTTCCTAGGATGCATGTCCCAAGCCTGTGCCCCCATCCTGGAACAACTTAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR GCA 90 bp CTGTGGCTTCCTTCCAGGTCCTGTGTTAAAGTGTTCTTTTGGGAGAGAGTCCTTGCAGGAGCACTGGCTTaGCCTCCCGCATGCAGCCCG +
Preference number: 2 (lower is better)
Translates to: LWLPSRSCVKVFFWERVLAGALA*PPACSP
Trigger: CGGGCTGCATGCGGGAGGGCAAGCCAGTGCTCCTGC...AAGGACTCTCTCCCAAAAGAACACTTTAACACAGGACCTGGAAGGAAGCCACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CCA 90 bp GTAAGTTGTTCCAGGATGGGGGCACAGGCTTGGGACATGCATCCTAGGAAGCATCAGGGGCCCCCTCAGTaGAAGAGGAGAGCAGACACT +
Preference number: 2 (lower is better)
Translates to: VSCSRMGAQAWDMHPRKHQGPPQ*KRRADT
Trigger: AGTGTCTGCTCTCCTCTTCCACTGAGGGGGCCCCTG...ATGCTTCCTAGGATGCATGTCCCAAGCCTGTGCCCCCATCCTGGAACAACTTAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR GCA 90 bp TGGCACACACCTCCACACCCAGCTTACCTCTGCCTGTTTTCTCTTCTCCCGATTGGGAGGAAGAGTGAGTaGCTGCTGACTTCAGGGTCC +
Preference number: 2 (lower is better)
Translates to: WHTPPHPAYLCLFSLLPIGRKSE*LLTSGS
Trigger: GGACCCTGAAGTCAGCAGGCACTCACTCTTCCTCCC...AATCGGGAGAAGAGAAAACAGGCAGAGGTAAGCTGGGTGTGGAGGTGTGTGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CCA 90 bp CTGTGGCTTCCTTCCAGGTCCTGTGTTAAAGTGTTCTTTTGGGAGAGAGTCCTTATGCCTTGTGTCCCCTaGGGACCTGGGGTGGGCAGC +
Preference number: 2 (lower is better)
Translates to: LWLPSRSCVKVFFWERVLMPCVP*GPGVGS
Trigger: GCTGCCCACCCCAGGTCCCCAGGGGACACAAGGCAT...AAGGACTCTCTCCCAAAAGAACACTTTAACACAGGACCTGGAAGGAAGCCACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR CAA 90 bp CCAGAGCAGCCTGCCCAGGCCCTGGTTATTTTGAGAGAATCCTTCTaGAGAGCCATAGAACCTTCGGCATCCCTCACCCTCTTTCCAAGG +
Preference number: 2 (lower is better)
Translates to: PEQPAQALVILRESF*RAIEPSASLTLFPR
Trigger: CCTTGGAAAGAGGGTGAGGGATGCCGAAGGTTCTATGGCTCTCAAGAAGGATTCTCTCAAAATAACCAGGGCCTGGGCAGGCTGCTCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR TCA 90 bp GCACACACCTCCACACCCAGCTTACCTCTGCCTGTTTTCTCTTCTCCCGATTCTCGTCAGTTGAGTCCCTaGTCTTCTGGCTTCTGGTCC +
Preference number: 2 (lower is better)
Translates to: AHTSTPSLPLPVFSSPDSRQLSP*SSGFWS
Trigger: GGACCAGAAGCCAGAAGATCAGGGACTCAACTGACG...AGAATCGGGAGAAGAGAAAACAGGCAGAGGTAAGCTGGGTGTGGAGGTGTGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR GCA 90 bp TGGCACACACCTCCACACCCAGCTTACCTCTGCCTGTTTTCTCTTCTCCCGATTTCCGCCTTGTCCCTGTaGCCTCCTCCAAAGTTCACA +
Preference number: 2 (lower is better)
Translates to: WHTPPHPAYLCLFSLLPISALSL*PPPKFT
Trigger: TGTGAACTTTGGAGGAGGGCACAGGGACAAGGCGGA...AATCGGGAGAAGAGAAAACAGGCAGAGGTAAGCTGGGTGTGGAGGTGTGTGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CCA 90 bp GCACACACCTCCACACCCAGCTTACCTCTGCCTGTTTTCTCTTCTCCCGATTCTATGCTGCCGAGCAGATaGAGTGGGAGGACGAATGAC +
Preference number: 2 (lower is better)
Translates to: AHTSTPSLPLPVFSSPDSMLPSR*SGRTND
Trigger: GTCATTCGTCCTCCCACTCCATCTGCTCGGCAGCAT...AGAATCGGGAGAAGAGAAAACAGGCAGAGGTAAGCTGGGTGTGGAGGTGTGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR GCA 90 bp ATCCTAGGAAGCATGCCTGTGAAGTCCTTTGGAGCCTCTGCATGCTACATCACCTCCAGCAATGTCACCTaGAGTGCAGTGGCCCTCCTT +
Preference number: 2 (lower is better)
Translates to: ILGSMPVKSFGASACYITSSNVT*SAVALL
Trigger: AAGGAGGGCCACTGCACTGCAGGTGACATTGCTGGA...GGTGATGTAGCATGCAGAGGCTCCAAAGGACTTCACAGGCATGCTTCCTAGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR TCA 90 bp CAGTACCTGAGGACTGACTGGTCAACTCAGACTGGTTTGTTTTGTGGTTTTATCAGAGTGAGTGCCTGCTaGCTTCAGGGTCCCCCGGGA +
Preference number: 2 (lower is better)
Translates to: QYLRTDWSTQTGLFCGFIRVSAC*LQGPPG
Trigger: TCCCGGGGGACCCTGAAGTCAGCAGGCACTCACTCT...GATAAAACCACAAAACAAACCAGTCTGAGTTGACCAGTCAGTCCTCAGGTACTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR GCA 90 bp GACAGCAGTAACAGTAACACCCTCTGTGGCTTCCTTCCAGGTCCTGTGTTAAAGCAGAAGTTGCTGGAATaGCTTGTGTCCCCTGGGGAC +
Preference number: 2 (lower is better)
Translates to: DSSNSNTLCGFLPGPVLKQKLLE*LVSPGD
Trigger: GTCCCCAGGGGACACAAGGCATTCCAGCAACTTCTG...CTTTAACACAGGACCTGGAAGGAAGCCACAGAGGGTGTTACTGTTACTGCTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR GCA 90 bp TGGCACACACCTCCACACCCAGCTTACCTCTGCCTGTTTTCTCTTCTCCCGATTTTTGGAGCCTCTGCATaGTACATCACCACCATCTCC +
Preference number: 2 (lower is better)
Translates to: WHTPPHPAYLCLFSLLPIFGASA*YITTIS
Trigger: GGAGATGGTGGTGATGTAGCATGCAGAGGCTCCAAA...AATCGGGAGAAGAGAAAACAGGCAGAGGTAAGCTGGGTGTGGAGGTGTGTGCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CCA 90 bp CTGTGGCTTCCTTCCAGGTCCTGTGTTAAAGTGTTCTTTTGGGAGAGAGTCCTTGGGCTTTGCCCTCTCTaGGCCCTGGTTCCACTTTCT +
Preference number: 2 (lower is better)
Translates to: LWLPSRSCVKVFFWERVLGLCPL*ALVPLS
Trigger: AGAAAGTGGAACCAGGGCCCAGAGAGGGCAAAGCCC...AAGGACTCTCTCCCAAAAGAACACTTTAACACAGGACCTGGAAGGAAGCCACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR TCA 90 bp CTGTGGCTTCCTTCCAGGTCCTGTGTTAAAGTGTTCTTTTGGGAGAGAGTCCTTCGTCAGTTGAGTCCCTaGTCTTCTGGCTTCTGGTCC +
Preference number: 2 (lower is better)
Translates to: LWLPSRSCVKVFFWERVLRQLSP*SSGFWS
Trigger: GGACCAGAAGCCAGAAGATCAGGGACTCAACTGACG...AAGGACTCTCTCCCAAAAGAACACTTTAACACAGGACCTGGAAGGAAGCCACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR TCA 90 bp GACAGCAGTAACAGTAACACCCTCTGTGGCTTCCTTCCAGGTCCTGTGTTAAAGAATGACCGGAGTGGCTaGGAAACAGGAACCAGGAGA +
Preference number: 2 (lower is better)
Translates to: DSSNSNTLCGFLPGPVLKNDRSG*ETGTRR
Trigger: TCTCCTGGTTCCTGTTTCTCAGCCACTCCGGTCATT...CTTTAACACAGGACCTGGAAGGAAGCCACAGAGGGTGTTACTGTTACTGCTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR GCA 90 bp CAGTACCTGAGGACTGACTGGTCAACTCAGACTGGTTTGTTTTGTGGTTTTATCGGGGCCAGAGCAGCCTaGCCAGGCCCTGGTTATTTT +
Preference number: 2 (lower is better)
Translates to: QYLRTDWSTQTGLFCGFIGARAA*PGPGYF
Trigger: AAAATAACCAGGGCCTGGGCAGGCTGCTCTGGCCCC...GATAAAACCACAAAACAAACCAGTCTGAGTTGACCAGTCAGTCCTCAGGTACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CCA 90 bp ATCCTAGGAAGCATGCCTGTGAAGTCCTTTGGAGCCTCTGCATGCTACATCACCTTCTGCAGAAGTTGCTaGAATGCCTTGTGTCCCCTG +
Preference number: 2 (lower is better)
Translates to: ILGSMPVKSFGASACYITFCRSC*NALCPL
Trigger: CAGGGGACACAAGGCATTCCAGCAACTTCTGCAGAA...GGTGATGTAGCATGCAGAGGCTCCAAAGGACTTCACAGGCATGCTTCCTAGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CCA 90 bp ATCCTAGGAAGCATGCCTGTGAAGTCCTTTGGAGCCTCTGCATGCTACATCACCATAGGGGATGGGAAATaGGGGAGGCAGACACATTTC +
Preference number: 2 (lower is better)
Translates to: ILGSMPVKSFGASACYITIGDGK*GRQTHF
Trigger: GAAATGTGTCTGCCTCCCCCATTTCCCATCCCCTAT...GGTGATGTAGCATGCAGAGGCTCCAAAGGACTTCACAGGCATGCTTCCTAGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR GCA 90 bp CTGTGGCTTCCTTCCAGGTCCTGTGTTAAAGTGTTCTTTTGGGAGAGAGTCCTTACTCACTTCCCCTCATaGCAGGCAGCTCATTTCCAC +
Preference number: 2 (lower is better)
Translates to: LWLPSRSCVKVFFWERVLTHFPS*QAAHFH
Trigger: GTGGAAATGAGCTGCCTGGCATGAGGGGAAGTGAGT...AAGGACTCTCTCCCAAAAGAACACTTTAACACAGGACCTGGAAGGAAGCCACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR GCA 90 bp TTGTTGTCATTTGGTTTTGAGAGTCTCAAATACCCCAGGCTGACCTTGAACCCTTCCAAGCTTGGGCTTTaGCCTCTCTGGGCCCTGGTT +
Preference number: 2 (lower is better)
Translates to: LLSFGFESLKYPRLTLNPSKLGL*PLWALV
Trigger: AACCAGGGCCCAGAGAGGGCAAAGCCCAAGCTTGGA...AGGGTTCAAGGTCAGCCTGGGGTATTTGAGACTCTCAAAACCAAATGACAACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CCA 90 bp TTGTTGTCATTTGGTTTTGAGAGTCTCAAATACCCCAGGCTGACCTTGAACCCTAGACAGAGAGATGGATaGAGGAGCCCAGGGGCCAGA +
Preference number: 2 (lower is better)
Translates to: LLSFGFESLKYPRLTLNPRQRDG*RSPGAR
Trigger: TCTGGCCCCTGGGCTCCTCCATCCATCTCTCTGTCT...AGGGTTCAAGGTCAGCCTGGGGTATTTGAGACTCTCAAAACCAAATGACAACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CCA 90 bp CTGTGGCTTCCTTCCAGGTCCTGTGTTAAAGTGTTCTTTTGGGAGAGAGTCCTTTCACCTGCAGTGCAGTaGCCCTCCTTTCTTCTCACT +
Preference number: 2 (lower is better)
Translates to: LWLPSRSCVKVFFWERVLSPAVQ*PSFLLT
Trigger: AGTGAGAAGAAAGGAGGGCCACTGCACTGCAGGTGA...AAGGACTCTCTCCCAAAAGAACACTTTAACACAGGACCTGGAAGGAAGCCACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CCA 90 bp CAGTACCTGAGGACTGACTGGTCAACTCAGACTGGTTTGTTTTGTGGTTTTATCTGTGTGGTCCAAGCTTaGGCTTTGCCCTCTCTGGGC +
Preference number: 2 (lower is better)
Translates to: QYLRTDWSTQTGLFCGFICVVQA*ALPSLG
Trigger: GCCCAGAGAGGGCAAAGCCCAAGCTTGGACCACACA...GATAAAACCACAAAACAAACCAGTCTGAGTTGACCAGTCAGTCCTCAGGTACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR TCA 90 bp GACAGCAGTAACAGTAACACCCTCTGTGGCTTCCTTCCAGGTCCTGTGTTAAAGCCCCCGGGAGTTTGTTaGATGAATGAGGGAAACTTT +
Preference number: 2 (lower is better)
Translates to: DSSNSNTLCGFLPGPVLKPPGVC*MNEGNF
Trigger: AAAGTTTCCCTCATTCATTCAACAAACTCCCGGGGG...CTTTAACACAGGACCTGGAAGGAAGCCACAGAGGGTGTTACTGTTACTGCTGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR GCA 90 bp CTGTGGCTTCCTTCCAGGTCCTGTGTTAAAGTGTTCTTTTGGGAGAGAGTCCTTGTCCTTTGGAGCCTCTaGATGCTACATCACCACCAT +
Preference number: 2 (lower is better)
Translates to: LWLPSRSCVKVFFWERVLVLWSL*MLHHHH
Trigger: ATGGTGGTGATGTAGCATGCAGAGGCTCCAAAGGAC...AAGGACTCTCTCCCAAAAGAACACTTTAACACAGGACCTGGAAGGAAGCCACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CCA 90 bp GACAGCAGTAACAGTAACACCCTCTGTGGCTTCCTTCCAGGTCCTGTGTTAAAGGTCCACAGAAGCCTCTaGGAATTTTTCTGCTCCCTA +
Preference number: 2 (lower is better)
Translates to: DSSNSNTLCGFLPGPVLKVHRSL*EFFCSL
Trigger: TAGGGAGCAGAAAAATTCCCAGAGGCTTCTGTGGAC...CTTTAACACAGGACCTGGAAGGAAGCCACAGAGGGTGTTACTGTTACTGCTGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CCA 90 bp CAGTACCTGAGGACTGACTGGTCAACTCAGACTGGTTTGTTTTGTGGTTTTATCATGGGGGCACAGGCTTaGGACATGCATCCTAGGAAG +
Preference number: 2 (lower is better)
Translates to: QYLRTDWSTQTGLFCGFIMGAQA*DMHPRK
Trigger: CTTCCTAGGATGCATGTCCCAAGCCTGTGCCCCCAT...GATAAAACCACAAAACAAACCAGTCTGAGTTGACCAGTCAGTCCTCAGGTACTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR GCA 90 bp CAGTACCTGAGGACTGACTGGTCAACTCAGACTGGTTTGTTTTGTGGTTTTATCCACCCAGCTTACCTCTaGCTGTTTTCTCTTCTCCCG +
Preference number: 2 (lower is better)
Translates to: QYLRTDWSTQTGLFCGFIHPAYL*LFSLLP
Trigger: CGGGAGAAGAGAAAACAGGCAGAGGTAAGCTGGGTG...GATAAAACCACAAAACAAACCAGTCTGAGTTGACCAGTCAGTCCTCAGGTACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CCA 90 bp GTGGCCCTCCTTTCTTCTCACTTCCTCTTAGGGGTTCAAGATTTCCAAGTCAGAGACACCCCCAGACTCTaGGGATCAAATATGTGGTTT +
Preference number: 2 (lower is better)
Translates to: VALLSSHFLLGVQDFQVRDTPRL*GSNMWF
Trigger: AAACCACATATTTGATCCCCAGAGTCTGGGGGTGTC...TCTGACTTGGAAATCTTGAACCCCTAAGAGGAAGTGAGAAGAAAGGAGGGCCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR GCA 90 bp ATCTTTCAGTACCTGAGGACTGACTGGTCAACTCAGACTGGTTTGTTTTGTGGTCTCAGACCATTTCTGTaGCAGGCATGTGTCCAGCAA +
Preference number: 2 (lower is better)
Translates to: IFQYLRTDWSTQTGLFCGLRPFL*QACVQQ
Trigger: TTGCTGGACACATGCCTGGCACAGAAATGGTCTGAG...ACCACAAAACAAACCAGTCTGAGTTGACCAGTCAGTCCTCAGGTACTGAAAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR GCA 90 bp TTGTTGTCATTTGGTTTTGAGAGTCTCAAATACCCCAGGCTGACCTTGAACCCTGTCCTTTGGAGCCTCTaGATGCTACATCACCACCAT +
Preference number: 2 (lower is better)
Translates to: LLSFGFESLKYPRLTLNPVLWSL*MLHHHH
Trigger: ATGGTGGTGATGTAGCATGCAGAGGCTCCAAAGGAC...AGGGTTCAAGGTCAGCCTGGGGTATTTGAGACTCTCAAAACCAAATGACAACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CCA 90 bp TTGTTGTCATTTGGTTTTGAGAGTCTCAAATACCCCAGGCTGACCTTGAACCCTATAGGGGATGGGAAATaGGGGAGGCAGACACATTTC +
Preference number: 2 (lower is better)
Translates to: LLSFGFESLKYPRLTLNPIGDGK*GRQTHF
Trigger: GAAATGTGTCTGCCTCCCCCATTTCCCATCCCCTAT...AGGGTTCAAGGTCAGCCTGGGGTATTTGAGACTCTCAAAACCAAATGACAACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CCA 90 bp CAGTACCTGAGGACTGACTGGTCAACTCAGACTGGTTTGTTTTGTGGTTTTATCGCCTGTGAAGTCCTTTaGAGCCTCTGCATGCTACAT +
Preference number: 2 (lower is better)
Translates to: QYLRTDWSTQTGLFCGFIACEVL*SLCMLH
Trigger: ATGTAGCATGCAGAGGCTCCAAAGGACTTCACAGGC...GATAAAACCACAAAACAAACCAGTCTGAGTTGACCAGTCAGTCCTCAGGTACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CCA 90 bp TTGTTGTCATTTGGTTTTGAGAGTCTCAAATACCCCAGGCTGACCTTGAACCCTCCAGGATTCTTTGCTTaGAGGCCTGGGACTTTTCTG +
Preference number: 2 (lower is better)
Translates to: LLSFGFESLKYPRLTLNPPGFFA*RPGTFL
Trigger: CAGAAAAGTCCCAGGCCTCCAAGCAAAGAATCCTGG...AGGGTTCAAGGTCAGCCTGGGGTATTTGAGACTCTCAAAACCAAATGACAACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CCA 90 bp ATCTTTCAGTACCTGAGGACTGACTGGTCAACTCAGACTGGTTTGTTTTGTGGTGAAAGTTCTGCTGTGTaGTCCAAGCTTGGGCTTTGC +
Preference number: 2 (lower is better)
Translates to: IFQYLRTDWSTQTGLFCGESSAV*SKLGLC
Trigger: GCAAAGCCCAAGCTTGGACCACACAGCAGAACTTTC...ACCACAAAACAAACCAGTCTGAGTTGACCAGTCAGTCCTCAGGTACTGAAAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR GCA 90 bp CAGTACCTGAGGACTGACTGGTCAACTCAGACTGGTTTGTTTTGTGGTTTTATCAGGCAGACACATTTCTaGAGAAGTTGCTGGAATGCC +
Preference number: 2 (lower is better)
Translates to: QYLRTDWSTQTGLFCGFIRQTHF*RSCWNA
Trigger: GGCATTCCAGCAACTTCTGCAGAAATGTGTCTGCCT...GATAAAACCACAAAACAAACCAGTCTGAGTTGACCAGTCAGTCCTCAGGTACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CCA 90 bp TTGTTGTCATTTGGTTTTGAGAGTCTCAAATACCCCAGGCTGACCTTGAACCCTGACACCCCCAGACTCTaGGGATCAAATATGTGGTTT +
Preference number: 2 (lower is better)
Translates to: LLSFGFESLKYPRLTLNPDTPRL*GSNMWF
Trigger: AAACCACATATTTGATCCCCAGAGTCTGGGGGTGTC...AGGGTTCAAGGTCAGCCTGGGGTATTTGAGACTCTCAAAACCAAATGACAACAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR GCA 90 bp GTTTCTATGTTTGCCCAGATAACAATATTGACAGCAGTAACAGTAACACCCTCTCAATGTCACCTGCAGTaGAGTGGCCCTCCTTTCTTC +
Preference number: 2 (lower is better)
Translates to: VSMFAQITILTAVTVTPSQCHLQ*SGPPFF
Trigger: GAAGAAAGGAGGGCCACTGCACTGCAGGTGACATTG...AGAGGGTGTTACTGTTACTGCTGTCAATATTGTTATCTGGGCAAACATAGAAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR GCA 90 bp GTTTCTATGTTTGCCCAGATAACAATATTGACAGCAGTAACAGTAACACCCTCTACTCACTTCCCCTCATaGCAGGCAGCTCATTTCCAC +
Preference number: 2 (lower is better)
Translates to: VSMFAQITILTAVTVTPSTHFPS*QAAHFH
Trigger: GTGGAAATGAGCTGCCTGGCATGAGGGGAAGTGAGT...AGAGGGTGTTACTGTTACTGCTGTCAATATTGTTATCTGGGCAAACATAGAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CCA 90 bp GTTTCTATGTTTGCCCAGATAACAATATTGACAGCAGTAACAGTAACACCCTCTAAGTCAGATAGGGGATaGGAAATGGGGGAGGCAGAC +
Preference number: 2 (lower is better)
Translates to: VSMFAQITILTAVTVTPSKSDRG*EMGEAD
Trigger: GTCTGCCTCCCCCATTTCCCATCCCCTATCTGACTT...AGAGGGTGTTACTGTTACTGCTGTCAATATTGTTATCTGGGCAAACATAGAAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR TCA 90 bp ATCTTTCAGTACCTGAGGACTGACTGGTCAACTCAGACTGGTTTGTTTTGTGGTCGGGAGTTTGTTGAATaGATGAGGGAAACTTTTGTG +
Preference number: 2 (lower is better)
Translates to: IFQYLRTDWSTQTGLFCGREFVE*MRETFV
Trigger: CACAAAAGTTTCCCTCATTCATTCAACAAACTCCCG...ACCACAAAACAAACCAGTCTGAGTTGACCAGTCAGTCCTCAGGTACTGAAAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR TCA 90 bp GTTTCTATGTTTGCCCAGATAACAATATTGACAGCAGTAACAGTAACACCCTCTAGTTTGTTGAATGAATaGGGGAAACTTTTGTGGAGA +
Preference number: 2 (lower is better)
Translates to: VSMFAQITILTAVTVTPSSLLNE*GKLLWR
Trigger: TCTCCACAAAAGTTTCCCTCATTCATTCAACAAACT...AGAGGGTGTTACTGTTACTGCTGTCAATATTGTTATCTGGGCAAACATAGAAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR GCA 72 bp GAAACATCAGCAGGAGCACTGGCTTGCCCTCCCGCATaGAGCCCGGCCCTCCAGCTGACTCACTTCCCCTCA +
Preference number: 3 (lower is better)
Translates to: ETSAGALACPPA*SPALQLTHFPS
Trigger: TGAGGGGAAGTGAGTCAGCTGGAGGGCCGGGCTGCATGCGGGAGGGCAAGCCAGTGCTCCTGCTGATGTTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR GCA 72 bp CAGGAACCAGGAGAAACATCAGCAGGAGCACTGGCTTaGCCTCCCGCATGCAGCCCGGCCCTCCAGCTGACT +
Preference number: 3 (lower is better)
Translates to: QEPGETSAGALA*PPACSPALQLT
Trigger: AGTCAGCTGGAGGGCCGGGCTGCATGCGGGAGGGCAAGCCAGTGCTCCTGCTGATGTTTCTCCTGGTTCCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR GCA 72 bp TGCAGCCCGGCCCTCCAGCTGACTCACTTCCCCTCATaGCAGGCAGCTCATTTCCACGCACCCAGGATTCTT +
Preference number: 3 (lower is better)
Translates to: CSPALQLTHFPS*QAAHFHAPRIL
Trigger: AAGAATCCTGGGTGCGTGGAAATGAGCTGCCTGGCATGAGGGGAAGTGAGTCAGCTGGAGGGCCGGGCTGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR TCA 72 bp GGACTTTTCTGCGACCCTGATCCGAGGGAGGAAGAGTaGGTGCCTGCTGACTTCAGGGTCCCCCGGGAGTTT +
Preference number: 3 (lower is better)
Translates to: GLFCDPDPREEE*VPADFRVPREF
Trigger: AAACTCCCGGGGGACCCTGAAGTCAGCAGGCACTCACTCTTCCTCCCTCGGATCAGGGTCGCAGAAAAGTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CAA 90 bp GCACACACCTCCACACCCAGCTTACCTCTGCCTGTTTTCTCTTCTCCCGATTCTACCACCATCTCCGCCTaGTCCCTGTGCCCTCCTCCA +
Preference number: 3 (lower is better)
Translates to: AHTSTPSLPLPVFSSPDSTTISA*SLCPPP
Trigger: TGGAGGAGGGCACAGGGACAAGGCGGAGATGGTGGT...AGAATCGGGAGAAGAGAAAACAGGCAGAGGTAAGCTGGGTGTGGAGGTGTGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CAA 90 bp TGGCACACACCTCCACACCCAGCTTACCTCTGCCTGTTTTCTCTTCTCCCGATTGTCCAAGCTTGGGCTTaGCCCTCTCTGGGCCCTGGT +
Preference number: 3 (lower is better)
Translates to: WHTPPHPAYLCLFSLLPIVQAWA*PSLGPG
Trigger: ACCAGGGCCCAGAGAGGGCAAAGCCCAAGCTTGGAC...AATCGGGAGAAGAGAAAACAGGCAGAGGTAAGCTGGGTGTGGAGGTGTGTGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR GCA 72 bp GCATGCTACATCACCACCATCTCCGCCTTGTCCCTGTaGCCTCCTCCAAAGTTCACACAGCGCAGTTCCCCA +
Preference number: 3 (lower is better)
Translates to: ACYITTISALSL*PPPKFTQRSSP
Trigger: TGGGGAACTGCGCTGTGTGAACTTTGGAGGAGGGCACAGGGACAAGGCGGAGATGGTGGTGATGTAGCATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR GCA 72 bp TTTTCTGCGACCCTGATCCGAGGGAGGAAGAGTGAGTaGCTGCTGACTTCAGGGTCCCCCGGGAGTTTGTTG +
Preference number: 3 (lower is better)
Translates to: FSATLIRGRKSE*LLTSGSPGSLL
Trigger: CAACAAACTCCCGGGGGACCCTGAAGTCAGCAGGCACTCACTCTTCCTCCCTCGGATCAGGGTCGCAGAAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR CCA 72 bp TCTGCTGTGTGGTCCAAGCTTGGGCTTTGCCCTCTCTaGGCCCTGGTTCCACTTTCTCTGGAGAGGCTTTGC +
Preference number: 3 (lower is better)
Translates to: SAVWSKLGLCPL*ALVPLSLERLC
Trigger: GCAAAGCCTCTCCAGAGAAAGTGGAACCAGGGCCCAGAGAGGGCAAAGCCCAAGCTTGGACCACACAGCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CAA 90 bp CTGATCCGAGGGAGGAAGAGTGAGTGCCTGCTGACTTCAGGGTCCCCCGGGAGTTCCAAAGATGGTGAGTaGTGGTCCAGTTCTGAAAGG +
Preference number: 3 (lower is better)
Translates to: LIRGRKSECLLTSGSPGSSKDGE*WSSSER
Trigger: CCTTTCAGAACTGGACCACAACTCACCATCTTTGGA...ACTCCCGGGGGACCCTGAAGTCAGCAGGCACTCACTCTTCCTCCCTCGGATCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR GCA 72 bp GGAAGCATGCCTGTGAAGTCCTTTGGAGCCTCTGCATaGTACATCACCACCATCTCCGCCTTGTCCCTGTGC +
Preference number: 3 (lower is better)
Translates to: GSMPVKSFGASA*YITTISALSLC
Trigger: GCACAGGGACAAGGCGGAGATGGTGGTGATGTAGCATGCAGAGGCTCCAAAGGACTTCACAGGCATGCTTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR GCA 72 bp CCTAGGAAGCATGCCTGTGAAGTCCTTTGGAGCCTCTaGATGCTACATCACCACCATCTCCGCCTTGTCCCT +
Preference number: 3 (lower is better)
Translates to: PRKHACEVLWSL*MLHHHHLRLVP
Trigger: AGGGACAAGGCGGAGATGGTGGTGATGTAGCATGCAGAGGCTCCAAAGGACTTCACAGGCATGCTTCCTAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR CCA 72 bp GTGGCAGTAAGTTGTTCCAGGATGGGGGCACAGGCTTaGGACATGCATCCTAGGAAGCATGCCTGTGAAGTC +
Preference number: 3 (lower is better)
Translates to: VAVSCSRMGAQA*DMHPRKHACEV
Trigger: GACTTCACAGGCATGCTTCCTAGGATGCATGTCCCAAGCCTGTGCCCCCATCCTGGAACAACTTACTGCCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CAA 90 bp CTGTGGCTTCCTTCCAGGTCCTGTGTTAAAGTGTTCTTTTGGGAGAGAGTCCTTGTCCAAGCTTGGGCTTaGCCCTCTCTGGGCCCTGGT +
Preference number: 3 (lower is better)
Translates to: LWLPSRSCVKVFFWERVLVQAWA*PSLGPG
Trigger: ACCAGGGCCCAGAGAGGGCAAAGCCCAAGCTTGGAC...AAGGACTCTCTCCCAAAAGAACACTTTAACACAGGACCTGGAAGGAAGCCACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR GCA 72 bp GGTTCCACTTTCTCTGGAGAGGCTTTGCTAATATGCTaGCGAGCAGATGGAGTGGGAGGACGAATGACCGGA +
Preference number: 3 (lower is better)
Translates to: GSTFSGEALLIC*RADGVGGRMTG
Trigger: TCCGGTCATTCGTCCTCCCACTCCATCTGCTCGGCAGCATATTAGCAAAGCCTCTCCAGAGAAAGTGGAACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR GCA 72 bp CCTGGTTCCACTTTCTCTGGAGAGGCTTTGCTAATATaGTGCCGAGCAGATGGAGTGGGAGGACGAATGACC +
Preference number: 3 (lower is better)
Translates to: PGSTFSGEALLI*CRADGVGGRMT
Trigger: GGTCATTCGTCCTCCCACTCCATCTGCTCGGCAGCATATTAGCAAAGCCTCTCCAGAGAAAGTGGAACCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR CCA 72 bp GACATGCATCCTAGGAAGCATGCCTGTGAAGTCCTTTaGAGCCTCTGCATGCTACATCACCACCATCTCCGC +
Preference number: 3 (lower is better)
Translates to: DMHPRKHACEVL*SLCMLHHHHLR
Trigger: GCGGAGATGGTGGTGATGTAGCATGCAGAGGCTCCAAAGGACTTCACAGGCATGCTTCCTAGGATGCATGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CAA 90 bp GGAGGACGAATGACCGGAGTGGCTGAGAAACAGGAACCAGGAGAAACATCAGCAAAAGGTGGCAGTAAGTaGTTCCAGGATGGGGGCACA +
Preference number: 3 (lower is better)
Translates to: GGRMTGVAEKQEPGETSAKGGSK*FQDGGT
Trigger: TGTGCCCCCATCCTGGAACAACTTACTGCCACCTTT...TGCTGATGTTTCTCCTGGTTCCTGTTTCTCAGCCACTCCGGTCATTCGTCCTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR CCA 72 bp GCAGCAGACACCCCCAGACTCTGGGGATCAAATATGTaGTTTCTGCTACCGTCAGTTGAGTCCCTGATCTTC +
Preference number: 3 (lower is better)
Translates to: AADTPRLWGSNM*FLLPSVESLIF
Trigger: GAAGATCAGGGACTCAACTGACGGTAGCAGAAACCACATATTTGATCCCCAGAGTCTGGGGGTGTCTGCTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CAA 90 bp GACACATTTCTGCAGAAGTTGCTGGAATGCCTTGTGTCCCCTGGGGACCTGGGGTTGAGAGAATCCTTCTaGAGAGCCATAGAACCTTCG +
Preference number: 3 (lower is better)
Translates to: DTFLQKLLECLVSPGDLGLRESF*RAIEPS
Trigger: CGAAGGTTCTATGGCTCTCAAGAAGGATTCTCTCAA...CCCCAGGTCCCCAGGGGACACAAGGCATTCCAGCAACTTCTGCAGAAATGTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CAA 90 bp CAGTACCTGAGGACTGACTGGTCAACTCAGACTGGTTTGTTTTGTGGTTTTATCACCACCATCTCCGCCTaGTCCCTGTGCCCTCCTCCA +
Preference number: 3 (lower is better)
Translates to: QYLRTDWSTQTGLFCGFITTISA*SLCPPP
Trigger: TGGAGGAGGGCACAGGGACAAGGCGGAGATGGTGGT...GATAAAACCACAAAACAAACCAGTCTGAGTTGACCAGTCAGTCCTCAGGTACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CAA 90 bp TTGTTGTCATTTGGTTTTGAGAGTCTCAAATACCCCAGGCTGACCTTGAACCCTAGTTGCTGGAATGCCTaGTGTCCCCTGGGGACCTGG +
Preference number: 3 (lower is better)
Translates to: LLSFGFESLKYPRLTLNPSCWNA*CPLGTW
Trigger: CCAGGTCCCCAGGGGACACAAGGCATTCCAGCAACT...AGGGTTCAAGGTCAGCCTGGGGTATTTGAGACTCTCAAAACCAAATGACAACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CAA 90 bp GCACACACCTCCACACCCAGCTTACCTCTGCCTGTTTTCTCTTCTCCCGATTCTACATTTCTGCAGAAGTaGCTGGAATGCCTTGTGTCC +
Preference number: 3 (lower is better)
Translates to: AHTSTPSLPLPVFSSPDSTFLQK*LECLVS
Trigger: GGACACAAGGCATTCCAGCAACTTCTGCAGAAATGT...AGAATCGGGAGAAGAGAAAACAGGCAGAGGTAAGCTGGGTGTGGAGGTGTGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CAA 90 bp GACAGCAGTAACAGTAACACCCTCTGTGGCTTCCTTCCAGGTCCTGTGTTAAAGCCCAGGATTCTTTGCTaGGAGGCCTGGGACTTTTCT +
Preference number: 3 (lower is better)
Translates to: DSSNSNTLCGFLPGPVLKPRILC*EAWDFS
Trigger: AGAAAAGTCCCAGGCCTCCAAGCAAAGAATCCTGGG...CTTTAACACAGGACCTGGAAGGAAGCCACAGAGGGTGTTACTGTTACTGCTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR TCA 72 bp CAAATATGTGGTTTCTGCTACCGTCAGTTGAGTCCCTaGTCTTCTGGCTTCTGGTCCTGTGACAGCGGGCTT +
Preference number: 3 (lower is better)
Translates to: QICGFCYRQLSP*SSGFWSCDSGL
Trigger: AAGCCCGCTGTCACAGGACCAGAAGCCAGAAGATCAGGGACTCAACTGACGGTAGCAGAAACCACATATTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR GCA 72 bp GCGTTGTGGCACACACCTCCACACCCAGCTTACCTCTaGCTGTTTTCTCTTCTCCCGATTCTCTTTGCTTTT +
Preference number: 3 (lower is better)
Translates to: ALWHTPPHPAYL*LFSLLPILFAF
Trigger: AAAAGCAAAGAGAATCGGGAGAAGAGAAAACAGGCAGAGGTAAGCTGGGTGTGGAGGTGTGTGCCACAACGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CAA 90 bp TGGCACACACCTCCACACCCAGCTTACCTCTGCCTGTTTTCTCTTCTCCCGATTCAGGCCCTGGTTATTTaGAGAGAATCCTTCTTGAGA +
Preference number: 3 (lower is better)
Translates to: WHTPPHPAYLCLFSLLPIQALVI*RESFLR
Trigger: TCTCAAGAAGGATTCTCTCAAAATAACCAGGGCCTG...AATCGGGAGAAGAGAAAACAGGCAGAGGTAAGCTGGGTGTGGAGGTGTGTGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CAA 90 bp GTAAGTTGTTCCAGGATGGGGGCACAGGCTTGGGACATGCATCCTAGGAAGCATCAGGCCCTGGTTATTTaGAGAGAATCCTTCTTGAGA +
Preference number: 3 (lower is better)
Translates to: VSCSRMGAQAWDMHPRKHQALVI*RESFLR
Trigger: TCTCAAGAAGGATTCTCTCAAAATAACCAGGGCCTG...ATGCTTCCTAGGATGCATGTCCCAAGCCTGTGCCCCCATCCTGGAACAACTTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CAA 90 bp ATCCTAGGAAGCATGCCTGTGAAGTCCTTTGGAGCCTCTGCATGCTACATCACCACATTTCTGCAGAAGTaGCTGGAATGCCTTGTGTCC +
Preference number: 3 (lower is better)
Translates to: ILGSMPVKSFGASACYITTFLQK*LECLVS
Trigger: GGACACAAGGCATTCCAGCAACTTCTGCAGAAATGT...GGTGATGTAGCATGCAGAGGCTCCAAAGGACTTCACAGGCATGCTTCCTAGGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR TCA 72 bp CTGGGGATCAAATATGTGGTTTCTGCTACCGTCAGTTaGGTCCCTGATCTTCTGGCTTCTGGTCCTGTGACA +
Preference number: 3 (lower is better)
Translates to: LGIKYVVSATVS*VPDLLASGPVT
Trigger: TGTCACAGGACCAGAAGCCAGAAGATCAGGGACTCAACTGACGGTAGCAGAAACCACATATTTGATCCCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR TCA 72 bp CCTGCTGACTTCAGGGTCCCCCGGGAGTTTGTTGAATaGATGAGGGAAACTTTTGTGGAGATTCCAAAGATG +
Preference number: 3 (lower is better)
Translates to: PADFRVPREFVE*MRETFVEIPKM
Trigger: CATCTTTGGAATCTCCACAAAAGTTTCCCTCATTCATTCAACAAACTCCCGGGGGACCCTGAAGTCAGCAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CAA 90 bp TTGTTGTCATTTGGTTTTGAGAGTCTCAAATACCCCAGGCTGACCTTGAACCCTAAAGGTGGCAGTAAGTaGTTCCAGGATGGGGGCACA +
Preference number: 3 (lower is better)
Translates to: LLSFGFESLKYPRLTLNPKGGSK*FQDGGT
Trigger: TGTGCCCCCATCCTGGAACAACTTACTGCCACCTTT...AGGGTTCAAGGTCAGCCTGGGGTATTTGAGACTCTCAAAACCAAATGACAACAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CAA 90 bp TGGCACACACCTCCACACCCAGCTTACCTCTGCCTGTTTTCTCTTCTCCCGATTGCCCAGATAACAATATaGACAGCAGTAACAGTAACA +
Preference number: 3 (lower is better)
Translates to: WHTPPHPAYLCLFSLLPIAQITI*TAVTVT
Trigger: TGTTACTGTTACTGCTGTCAATATTGTTATCTGGGC...AATCGGGAGAAGAGAAAACAGGCAGAGGTAAGCTGGGTGTGGAGGTGTGTGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CAA 90 bp ATCTTTCAGTACCTGAGGACTGACTGGTCAACTCAGACTGGTTTGTTTTGTGGTTCCAAAGATGGTGAGTaGTGGTCCAGTTCTGAAAGG +
Preference number: 3 (lower is better)
Translates to: IFQYLRTDWSTQTGLFCGSKDGE*WSSSER
Trigger: CCTTTCAGAACTGGACCACAACTCACCATCTTTGGA...ACCACAAAACAAACCAGTCTGAGTTGACCAGTCAGTCCTCAGGTACTGAAAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CAA 90 bp TTGTTGTCATTTGGTTTTGAGAGTCTCAAATACCCCAGGCTGACCTTGAACCCTTTGAGAGAATCCTTCTaGAGAGCCATAGAACCTTCG +
Preference number: 3 (lower is better)
Translates to: LLSFGFESLKYPRLTLNPLRESF*RAIEPS
Trigger: CGAAGGTTCTATGGCTCTCAAGAAGGATTCTCTCAA...AGGGTTCAAGGTCAGCCTGGGGTATTTGAGACTCTCAAAACCAAATGACAACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR-3UTR CAA 90 bp ATCTTTCAGTACCTGAGGACTGACTGGTCAACTCAGACTGGTTTGTTTTGTGGTGCCCAGATAACAATATaGACAGCAGTAACAGTAACA +
Preference number: 3 (lower is better)
Translates to: IFQYLRTDWSTQTGLFCGAQITI*TAVTVT
Trigger: TGTTACTGTTACTGCTGTCAATATTGTTATCTGGGC...ACCACAAAACAAACCAGTCTGAGTTGACCAGTCAGTCCTCAGGTACTGAAAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR CAA 72 bp ACAGGAACCAGGAGAAACATCAGCAGGAGCACTGGCTaGCCCTCCCGCATGCAGCCCGGCCCTCCAGCTGAC +
Preference number: 4 (lower is better)
Translates to: TGTRRNISRSTG*PSRMQPGPPAD
Trigger: GTCAGCTGGAGGGCCGGGCTGCATGCGGGAGGGCAAGCCAGTGCTCCTGCTGATGTTTCTCCTGGTTCCTGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS-3UTR TCA 90 bp CTGATCCGAGGGAGGAAGAGTGAGTGCCTGCTGACTTCAGGGTCCCCCGGGAGTCCATGGCAAAGAGGATaGGCGTGGAGGCCAGGCCGA +
Preference number: 4 (lower is better)
Translates to: LIRGRKSECLLTSGSPGSPWQRG*AWRPGR
Trigger: TCGGCCTGGCCTCCACGCTCATCCTCTTTGCCATGG...ACTCCCGGGGGACCCTGAAGTCAGCAGGCACTCACTCTTCCTCCCTCGGATCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS-3UTR GCA 90 bp CTGATCCGAGGGAGGAAGAGTGAGTGCCTGCTGACTTCAGGGTCCCCCGGGAGTGGTCCCCCATCTCTCTaGTGTCTGGGGCGATGGCCT +
Preference number: 4 (lower is better)
Translates to: LIRGRKSECLLTSGSPGSGPPSL*CLGRWP
Trigger: AGGCCATCGCCCCAGACAGCAGAGAGATGGGGGACC...ACTCCCGGGGGACCCTGAAGTCAGCAGGCACTCACTCTTCCTCCCTCGGATCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS-3UTR GCA 90 bp ACCCTCTTTCCAAGGCCTCTAGCCACCATACCGAAGGAGGAGAAGCAGCAGCAGCCACTCTCTGCCACCTaGACTGAGAGGGCTCCCAGG +
Preference number: 4 (lower is better)
Translates to: TLFPRPLATIPKEEKQQQPLSAT*TERAPR
Trigger: CCTGGGAGCCCTCTCAGTGCAGGTGGCAGAGAGTGG...CTGCTGCTGCTTCTCCTCCTTCGGTATGGTGGCTAGAGGCCTTGGAAAGAGGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS-3UTR GCA 90 bp GACACATTTCTGCAGAAGTTGCTGGAATGCCTTGTGTCCCCTGGGGACCTGGGGAGCAGGAGCCTGCCATaGCCTGCCACTCTCTGCCAC +
Preference number: 4 (lower is better)
Translates to: DTFLQKLLECLVSPGDLGSRSLP*PATLCH
Trigger: GTGGCAGAGAGTGGCAGGGCATGGCAGGCTCCTGCT...CCCCAGGTCCCCAGGGGACACAAGGCATTCCAGCAACTTCTGCAGAAATGTGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR CAA 72 bp GGAGCCTCTGCATGCTACATCACCACCATCTCCGCCTaGTCCCTGTGCCCTCCTCCAAAGTTCACACAGCGC +
Preference number: 4 (lower is better)
Translates to: GASACYITTISA*SLCPPPKFTQR
Trigger: GCGCTGTGTGAACTTTGGAGGAGGGCACAGGGACAAGGCGGAGATGGTGGTGATGTAGCATGCAGAGGCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS-3UTR CCA 90 bp GGAGGACGAATGACCGGAGTGGCTGAGAAACAGGAACCAGGAGAAACATCAGCAAGCATCGTCCCACCGTaGGCCAGGCCCAGCAGAGAG +
Preference number: 4 (lower is better)
Translates to: GGRMTGVAEKQEPGETSASIVPP*ARPSRE
Trigger: CTCTCTGCTGGGCCTGGCCCACGGTGGGACGATGCT...TGCTGATGTTTCTCCTGGTTCCTGTTTCTCAGCCACTCCGGTCATTCGTCCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS-3UTR TCA 90 bp ATCCTAGGAAGCATGCCTGTGAAGTCCTTTGGAGCCTCTGCATGCTACATCACCCCTGGGCAATACTGCTaGTGCTCGCCCAGGCCCAGC +
Preference number: 4 (lower is better)
Translates to: ILGSMPVKSFGASACYITPGQYC*CSPRPS
Trigger: GCTGGGCCTGGGCGAGCATCAGCAGTATTGCCCAGG...GGTGATGTAGCATGCAGAGGCTCCAAAGGACTTCACAGGCATGCTTCCTAGGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS-3UTR GCA 90 bp ATCCTAGGAAGCATGCCTGTGAAGTCCTTTGGAGCCTCTGCATGCTACATCACCGAGCCTGCCATGCCCTaGCACTCTCTGCCACCTGCA +
Preference number: 4 (lower is better)
Translates to: ILGSMPVKSFGASACYITEPAMP*HSLPPA
Trigger: TGCAGGTGGCAGAGAGTGGCAGGGCATGGCAGGCTC...GGTGATGTAGCATGCAGAGGCTCCAAAGGACTTCACAGGCATGCTTCCTAGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS-3UTR GCA 90 bp GTAAGTTGTTCCAGGATGGGGGCACAGGCTTGGGACATGCATCCTAGGAAGCATGTCTCTTCTCCCCGATaGAGGTCTGGAAAGGGGCGC +
Preference number: 4 (lower is better)
Translates to: VSCSRMGAQAWDMHPRKHVSSPR*RSGKGR
Trigger: GCGCCCCTTTCCAGACCTGCATCGGGGAGAAGAGAC...ATGCTTCCTAGGATGCATGTCCCAAGCCTGTGCCCCCATCCTGGAACAACTTAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS-3UTR GCA 90 bp GCACACACCTCCACACCCAGCTTACCTCTGCCTGTTTTCTCTTCTCCCGATTCTGTCTCTTCTCCCCGATaGAGGTCTGGAAAGGGGCGC +
Preference number: 4 (lower is better)
Translates to: AHTSTPSLPLPVFSSPDSVSSPR*RSGKGR
Trigger: GCGCCCCTTTCCAGACCTGCATCGGGGAGAAGAGAC...AGAATCGGGAGAAGAGAAAACAGGCAGAGGTAAGCTGGGTGTGGAGGTGTGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS-3UTR GCA 90 bp GCACACACCTCCACACCCAGCTTACCTCTGCCTGTTTTCTCTTCTCCCGATTCTCACAGCAGTCAATGGTaGCACCTGTCCCGTGCCCCA +
Preference number: 4 (lower is better)
Translates to: AHTSTPSLPLPVFSSPDSHSSQW*HLSRAP
Trigger: TGGGGCACGGGACAGGTGGCACCATTGACTGCTGTG...AGAATCGGGAGAAGAGAAAACAGGCAGAGGTAAGCTGGGTGTGGAGGTGTGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS-3UTR GCA 90 bp TGGCACACACCTCCACACCCAGCTTACCTCTGCCTGTTTTCTCTTCTCCCGATTCCAATGCCAGCCCGTTaGCCACTACACCAGCCACGA +
Preference number: 4 (lower is better)
Translates to: WHTPPHPAYLCLFSLLPIPMPAR*PLHQPR
Trigger: TCGTGGCTGGTGTAGTGGGCAACGGGCTGGCATTGG...AATCGGGAGAAGAGAAAACAGGCAGAGGTAAGCTGGGTGTGGAGGTGTGTGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS-3UTR GCA 90 bp GTAAGTTGTTCCAGGATGGGGGCACAGGCTTGGGACATGCATCCTAGGAAGCATACCCAGGATGCCCAATaGCAGCCCGTTGCCCACTAC +
Preference number: 4 (lower is better)
Translates to: VSCSRMGAQAWDMHPRKHTQDAQ*QPVAHY
Trigger: GTAGTGGGCAACGGGCTGGCATTGGGCATCCTGGGT...ATGCTTCCTAGGATGCATGTCCCAAGCCTGTGCCCCCATCCTGGAACAACTTAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS-3UTR GCA 90 bp GTAAGTTGTTCCAGGATGGGGGCACAGGCTTGGGACATGCATCCTAGGAAGCATGGCTCAAGAAGCACGTaGCCAGCAGATCCGTCACCG +
Preference number: 4 (lower is better)
Translates to: VSCSRMGAQAWDMHPRKHGSRST*PADPSP
Trigger: CGGTGACGGATCTGCTGGGCACGTGCTTCTTGAGCC...ATGCTTCCTAGGATGCATGTCCCAAGCCTGTGCCCCCATCCTGGAACAACTTAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS-3UTR CCA 90 bp ACCCTCTTTCCAAGGCCTCTAGCCACCATACCGAAGGAGGAGAAGCAGCAGCAGCTCCCTTCCTTAGCCTaGAGAGAAGTAGGAGCCGGT +
Preference number: 4 (lower is better)
Translates to: TLFPRPLATIPKEEKQQQLPSLA*REVGAG
Trigger: ACCGGCTCCTACTTCTCTCCAGGCTAAGGAAGGGAG...CTGCTGCTGCTTCTCCTCCTTCGGTATGGTGGCTAGAGGCCTTGGAAAGAGGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR CAA 72 bp CAGGCAGCTCATTTCCACGCACCCAGGATTCTTTGCTaGGAGGCCTGGGACTTTTCTGCGACCCTGATCCGA +
Preference number: 4 (lower is better)
Translates to: QAAHFHAPRILC*EAWDFSATLIR
Trigger: TCGGATCAGGGTCGCAGAAAAGTCCCAGGCCTCCAAGCAAAGAATCCTGGGTGCGTGGAAATGAGCTGCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR CAA 72 bp AGAGGCCGTGAGAAAGTTCTGCTGTGTGGTCCAAGCTaGGGCTTTGCCCTCTCTGGGCCCTGGTTCCACTTT +
Preference number: 4 (lower is better)
Translates to: RGREKVLLCGPS*GFALSGPWFHF
Trigger: AAAGTGGAACCAGGGCCCAGAGAGGGCAAAGCCCAAGCTTGGACCACACAGCAGAACTTTCTCACGGCCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS-3UTR TCA 90 bp GACAGCAGTAACAGTAACACCCTCTGTGGCTTCCTTCCAGGTCCTGTGTTAAAGGAGGGCTCCCAGGAGTaGCAGAAGGGGGTCCAGGAT +
Preference number: 4 (lower is better)
Translates to: DSSNSNTLCGFLPGPVLKEGSQE*QKGVQD
Trigger: ATCCTGGACCCCCTTCTGTCACTCCTGGGAGCCCTC...CTTTAACACAGGACCTGGAAGGAAGCCACAGAGGGTGTTACTGTTACTGCTGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS-3UTR TCA 90 bp ATCCTAGGAAGCATGCCTGTGAAGTCCTTTGGAGCCTCTGCATGCTACATCACCGGCAGCGATGGCCTCTaGCTTGGATGGCATTCCCAC +
Preference number: 4 (lower is better)
Translates to: ILGSMPVKSFGASACYITGSDGL*LGWHSH
Trigger: GTGGGAATGCCATCCAAGTCAGAGGCCATCGCTGCC...GGTGATGTAGCATGCAGAGGCTCCAAAGGACTTCACAGGCATGCTTCCTAGGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS-3UTR GCA 90 bp GACAGCAGTAACAGTAACACCCTCTGTGGCTTCCTTCCAGGTCCTGTGTTAAAGCCACTCTCTGCCACCTaGACTGAGAGGGCTCCCAGG +
Preference number: 4 (lower is better)
Translates to: DSSNSNTLCGFLPGPVLKPLSAT*TERAPR
Trigger: CCTGGGAGCCCTCTCAGTGCAGGTGGCAGAGAGTGG...CTTTAACACAGGACCTGGAAGGAAGCCACAGAGGGTGTTACTGTTACTGCTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS-3UTR GCA 90 bp ATCCTAGGAAGCATGCCTGTGAAGTCCTTTGGAGCCTCTGCATGCTACATCACCCCACGAACATCAGCGTaGTGGTGGCAGGTCCTACCG +
Preference number: 4 (lower is better)
Translates to: ILGSMPVKSFGASACYITPRTSA*WWQVLP
Trigger: CGGTAGGACCTGCCACCAGCACGCTGATGTTCGTGG...GGTGATGTAGCATGCAGAGGCTCCAAAGGACTTCACAGGCATGCTTCCTAGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS-3UTR CCA 90 bp GGAGGACGAATGACCGGAGTGGCTGAGAAACAGGAACCAGGAGAAACATCAGCAGCCTGCAAATCCCCATaGACAGAACGGGCACACAGG +
Preference number: 4 (lower is better)
Translates to: GGRMTGVAEKQEPGETSAACKSP*TERAHR
Trigger: CCTGTGTGCCCGTTCTGTCCATGGGGATTTGCAGGC...TGCTGATGTTTCTCCTGGTTCCTGTTTCTCAGCCACTCCGGTCATTCGTCCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR CAA 72 bp ATGCCAGGCAGCTCATTTCCACGCACCCAGGATTCTTaGCTTGGAGGCCTGGGACTTTTCTGCGACCCTGAT +
Preference number: 4 (lower is better)
Translates to: MPGSSFPRTQDS*LGGLGLFCDPD
Trigger: ATCAGGGTCGCAGAAAAGTCCCAGGCCTCCAAGCAAAGAATCCTGGGTGCGTGGAAATGAGCTGCCTGGCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR CAA 72 bp TCTCTGGGCCCTGGTTCCACTTTCTCTGGAGAGGCTTaGCTAATATGCTGCCGAGCAGATGGAGTGGGAGGA +
Preference number: 4 (lower is better)
Translates to: SLGPGSTFSGEA*LICCRADGVGG
Trigger: TCCTCCCACTCCATCTGCTCGGCAGCATATTAGCAAAGCCTCTCCAGAGAAAGTGGAACCAGGGCCCAGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR CAA 72 bp GTGAGAAAGTTCTGCTGTGTGGTCCAAGCTTGGGCTTaGCCCTCTCTGGGCCCTGGTTCCACTTTCTCTGGA +
Preference number: 4 (lower is better)
Translates to: VRKFCCVVQAWA*PSLGPGSTFSG
Trigger: TCCAGAGAAAGTGGAACCAGGGCCCAGAGAGGGCAAAGCCCAAGCTTGGACCACACAGCAGAACTTTCTCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS-3UTR TCA 90 bp GACAGCAGTAACAGTAACACCCTCTGTGGCTTCCTTCCAGGTCCTGTGTTAAAGGGCAGCGATGGCCTCTaGCTTGGATGGCATTCCCAC +
Preference number: 4 (lower is better)
Translates to: DSSNSNTLCGFLPGPVLKGSDGL*LGWHSH
Trigger: GTGGGAATGCCATCCAAGTCAGAGGCCATCGCTGCC...CTTTAACACAGGACCTGGAAGGAAGCCACAGAGGGTGTTACTGTTACTGCTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS-3UTR TCA 90 bp GTGGCCCTCCTTTCTTCTCACTTCCTCTTAGGGGTTCAAGATTTCCAAGTCAGAACAGGTAGGGGTGACTaGGTGCCAGGCACCGCTCCA +
Preference number: 4 (lower is better)
Translates to: VALLSSHFLLGVQDFQVRTGRGD*VPGTAP
Trigger: TGGAGCGGTGCCTGGCACTCAGTCACCCCTACCTGT...TCTGACTTGGAAATCTTGAACCCCTAAGAGGAAGTGAGAAGAAAGGAGGGCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS-3UTR GCA 90 bp GTGGCCCTCCTTTCTTCTCACTTCCTCTTAGGGGTTCAAGATTTCCAAGTCAGAGGTCCCCCATCTCTCTaGTGTCTGGGGCGATGGCCT +
Preference number: 4 (lower is better)
Translates to: VALLSSHFLLGVQDFQVRGPPSL*CLGRWP
Trigger: AGGCCATCGCCCCAGACAGCAGAGAGATGGGGGACC...TCTGACTTGGAAATCTTGAACCCCTAAGAGGAAGTGAGAAGAAAGGAGGGCCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS-3UTR CCA 90 bp GCACACACCTCCACACCCAGCTTACCTCTGCCTGTTTTCTCTTCTCCCGATTCTCGATGGCCTCTGACTTaGATGGCATTCCCACAGAGC +
Preference number: 4 (lower is better)
Translates to: AHTSTPSLPLPVFSSPDSRWPLT*MAFPQS
Trigger: GCTCTGTGGGAATGCCATCCAAGTCAGAGGCCATCG...AGAATCGGGAGAAGAGAAAACAGGCAGAGGTAAGCTGGGTGTGGAGGTGTGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS-3UTR CCA 90 bp GACTCACTTCCCCTCATGCCAGGCAGCTCATTTCCACGCACCCAGGATTCTTTGCGTTGCAGAAGAAGATaGAGGTCACCAACAGGGCCA +
Preference number: 4 (lower is better)
Translates to: DSLPLMPGSSFPRTQDSLRCRRR*RSPTGP
Trigger: TGGCCCTGTTGGTGACCTCCATCTTCTTCTGCAACG...CAAAGAATCCTGGGTGCGTGGAAATGAGCTGCCTGGCATGAGGGGAAGTGAGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS-3UTR CCA 90 bp GGAGGACGAATGACCGGAGTGGCTGAGAAACAGGAACCAGGAGAAACATCAGCAACAAACGAGCCATGGTaGCGTCTCTGTTGGCGGTAC +
Preference number: 4 (lower is better)
Translates to: GGRMTGVAEKQEPGETSATNEPW*RLCWRY
Trigger: GTACCGCCAACAGAGACGCCACCATGGCTCGTTTGT...TGCTGATGTTTCTCCTGGTTCCTGTTTCTCAGCCACTCCGGTCATTCGTCCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
3UTR CAA 72 bp CCTGCCCAGGCCCTGGTTATTTTGAGAGAATCCTTCTaGAGAGCCATAGAACCTTCGGCATCCCTCACCCTC +
Preference number: 4 (lower is better)
Translates to: PAQALVILRESF*RAIEPSASLTL
Trigger: GAGGGTGAGGGATGCCGAAGGTTCTATGGCTCTCAAGAAGGATTCTCTCAAAATAACCAGGGCCTGGGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
3UTR CAA 72 bp GTGAGTTGTGGTCCAGTTCTGAAAGGTGGCAGTAAGTaGTTCCAGGATGGGGGCACAGGCTTGGGACATGCA +
Preference number: 4 (lower is better)
Translates to: VSCGPVLKGGSK*FQDGGTGLGHA
Trigger: TGCATGTCCCAAGCCTGTGCCCCCATCCTGGAACAACTTACTGCCACCTTTCAGAACTGGACCACAACTCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS-3UTR TCA 90 bp TTGTTGTCATTTGGTTTTGAGAGTCTCAAATACCCCAGGCTGACCTTGAACCCTTCACCGCCAGCCCAGTaGCCAACACCGCAAAGGCCG +
Preference number: 4 (lower is better)
Translates to: LLSFGFESLKYPRLTLNPSPPAQ*PTPQRP
Trigger: CGGCCTTTGCGGTGTTGGTCACTGGGCTGGCGGTGA...AGGGTTCAAGGTCAGCCTGGGGTATTTGAGACTCTCAAAACCAAATGACAACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS-3UTR CCA 90 bp GTGGCCCTCCTTTCTTCTCACTTCCTCTTAGGGGTTCAAGATTTCCAAGTCAGAGGGAGCAGGCAGCGATaGCCTCTGACTTGGATGGCA +
Preference number: 4 (lower is better)
Translates to: VALLSSHFLLGVQDFQVRGSRQR*PLTWMA
Trigger: TGCCATCCAAGTCAGAGGCCATCGCTGCCTGCTCCC...TCTGACTTGGAAATCTTGAACCCCTAAGAGGAAGTGAGAAGAAAGGAGGGCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS-3UTR TCA 90 bp TTGTTGTCATTTGGTTTTGAGAGTCTCAAATACCCCAGGCTGACCTTGAACCCTGAGGGCTCCCAGGAGTaGCAGAAGGGGGTCCAGGAT +
Preference number: 4 (lower is better)
Translates to: LLSFGFESLKYPRLTLNPEGSQE*QKGVQD
Trigger: ATCCTGGACCCCCTTCTGTCACTCCTGGGAGCCCTC...AGGGTTCAAGGTCAGCCTGGGGTATTTGAGACTCTCAAAACCAAATGACAACAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS-3UTR GCA 90 bp CAGTACCTGAGGACTGACTGGTCAACTCAGACTGGTTTGTTTTGTGGTTTTATCGAGCCTGCCATGCCCTaGCACTCTCTGCCACCTGCA +
Preference number: 4 (lower is better)
Translates to: QYLRTDWSTQTGLFCGFIEPAMP*HSLPPA
Trigger: TGCAGGTGGCAGAGAGTGGCAGGGCATGGCAGGCTC...GATAAAACCACAAAACAAACCAGTCTGAGTTGACCAGTCAGTCCTCAGGTACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS-3UTR CCA 90 bp CTGTGGCTTCCTTCCAGGTCCTGTGTTAAAGTGTTCTTTTGGGAGAGAGTCCTTGCCTGCAAATCCCCATaGACAGAACGGGCACACAGG +
Preference number: 4 (lower is better)
Translates to: LWLPSRSCVKVFFWERVLACKSP*TERAHR
Trigger: CCTGTGTGCCCGTTCTGTCCATGGGGATTTGCAGGC...AAGGACTCTCTCCCAAAAGAACACTTTAACACAGGACCTGGAAGGAAGCCACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS-3UTR CCA 90 bp GACAGCAGTAACAGTAACACCCTCTGTGGCTTCCTTCCAGGTCCTGTGTTAAAGCGATGGCCTCTGACTTaGATGGCATTCCCACAGAGC +
Preference number: 4 (lower is better)
Translates to: DSSNSNTLCGFLPGPVLKRWPLT*MAFPQS
Trigger: GCTCTGTGGGAATGCCATCCAAGTCAGAGGCCATCG...CTTTAACACAGGACCTGGAAGGAAGCCACAGAGGGTGTTACTGTTACTGCTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS-3UTR GCA 90 bp CAGTACCTGAGGACTGACTGGTCAACTCAGACTGGTTTGTTTTGTGGTTTTATCCACAGCAGTCAATGGTaGCACCTGTCCCGTGCCCCA +
Preference number: 4 (lower is better)
Translates to: QYLRTDWSTQTGLFCGFIHSSQW*HLSRAP
Trigger: TGGGGCACGGGACAGGTGGCACCATTGACTGCTGTG...GATAAAACCACAAAACAAACCAGTCTGAGTTGACCAGTCAGTCCTCAGGTACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS-3UTR CCA 90 bp GTAAGTTGTTCCAGGATGGGGGCACAGGCTTGGGACATGCATCCTAGGAAGCATCAGAACTTGAGGCGTTaGAAGACAGCCTTTCGGAAA +
Preference number: 4 (lower is better)
Translates to: VSCSRMGAQAWDMHPRKHQNLRR*KTAFRK
Trigger: TTTCCGAAAGGCTGTCTTCCAACGCCTCAAGTTCTG...ATGCTTCCTAGGATGCATGTCCCAAGCCTGTGCCCCCATCCTGGAACAACTTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS-3UTR CCA 90 bp TGGCACACACCTCCACACCCAGCTTACCTCTGCCTGTTTTCTCTTCTCCCGATTCAGAACTTGAGGCGTTaGAAGACAGCCTTTCGGAAA +
Preference number: 4 (lower is better)
Translates to: WHTPPHPAYLCLFSLLPIQNLRR*KTAFRK
Trigger: TTTCCGAAAGGCTGTCTTCCAACGCCTCAAGTTCTG...AATCGGGAGAAGAGAAAACAGGCAGAGGTAAGCTGGGTGTGGAGGTGTGTGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS-3UTR CCA 90 bp TTGTTGTCATTTGGTTTTGAGAGTCTCAAATACCCCAGGCTGACCTTGAACCCTGGGAGCAGGCAGCGATaGCCTCTGACTTGGATGGCA +
Preference number: 4 (lower is better)
Translates to: LLSFGFESLKYPRLTLNPGSRQR*PLTWMA
Trigger: TGCCATCCAAGTCAGAGGCCATCGCTGCCTGCTCCC...AGGGTTCAAGGTCAGCCTGGGGTATTTGAGACTCTCAAAACCAAATGACAACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS-3UTR CCA 90 bp CTGTGGCTTCCTTCCAGGTCCTGTGTTAAAGTGTTCTTTTGGGAGAGAGTCCTTGAAGCACCAGCTCCCTaGGCAATACTGCTGATGCTC +
Preference number: 4 (lower is better)
Translates to: LWLPSRSCVKVFFWERVLEAPAP*AILLML
Trigger: GAGCATCAGCAGTATTGCCCAGGGAGCTGGTGCTTC...AAGGACTCTCTCCCAAAAGAACACTTTAACACAGGACCTGGAAGGAAGCCACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS-3UTR CCA 90 bp CAGTACCTGAGGACTGACTGGTCAACTCAGACTGGTTTGTTTTGTGGTTTTATCGGCCGAAGAACGTCATaGCGAAGGCGAAAGTGTCAC +
Preference number: 4 (lower is better)
Translates to: QYLRTDWSTQTGLFCGFIGRRTS*RRRKCH
Trigger: GTGACACTTTCGCCTTCGCCATGACGTTCTTCGGCC...GATAAAACCACAAAACAAACCAGTCTGAGTTGACCAGTCAGTCCTCAGGTACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS TCA 90 bp CGTCACCGCCAGCCCAGTGACCAACACCGCAAAGGCCGATGGGTGTaGCCTCCGTCGGGCACCCAGGATGCCCAATGCCAGCCCGTTGCC +
Preference number: 5 (lower is better)
Translates to: RHRQPSDQHRKGRWV*PPSGTQDAQCQPVA
Trigger: GGCAACGGGCTGGCATTGGGCATCCTGGGTGCCCGACGGAGGTCACACCCATCGGCCTTTGCGGTGTTGGTCACTGGGCTGGCGGTGACG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS GCA 90 bp CACAGAGCAGCCGTCACCACCAGTCAGAGGCACAGCAGTCAATGGTaGCACCTGTCCCGTGCCCCAGGACGACAGGGGCACCCAGCTCCC +
Preference number: 5 (lower is better)
Translates to: HRAAVTTSQRHSSQW*HLSRAPGRQGHPAP
Trigger: GGGAGCTGGGTGCCCCTGTCGTCCTGGGGCACGGGACAGGTGGCACCATTGACTGCTGTGCCTCTGACTGGTGGTGACGGCTGCTCTGTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS GCA 90 bp GCAGCGCGGCCCGTCCAGCTGGGCGTACAGGTAGGGGTGACTGAGTaGCAGGCACCGCTCCACAGCCATGGCAAAGAGGATGAGCGTGGA +
Preference number: 5 (lower is better)
Translates to: AARPVQLGVQVGVTE*QAPLHSHGKEDERG
Trigger: TCCACGCTCATCCTCTTTGCCATGGCTGTGGAGCGGTGCCTGGCACTCAGTCACCCCTACCTGTACGCCCAGCTGGACGGGCCGCGCTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS TCA 90 bp GGCTCAAGAAGCACGTGCCCAGCAGATCCGTCACCGCCAGCCCAGTaGCCAACACCGCAAAGGCCGATGGGTGTGACCTCCGTCGGGCAC +
Preference number: 5 (lower is better)
Translates to: GSRSTCPADPSPPAQ*PTPQRPMGVTSVGH
Trigger: GTGCCCGACGGAGGTCACACCCATCGGCCTTTGCGGTGTTGGTCACTGGGCTGGCGGTGACGGATCTGCTGGGCACGTGCTTCTTGAGCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS GCA 90 bp GGTGTGACCTCCGTCGGGCACCCAGGATGCCCAATGCCAGCCCGTTaGCCACTACACCAGCCACGAACATCAGCGTGCTGGTGGCAGGTC +
Preference number: 5 (lower is better)
Translates to: GVTSVGHPGCPMPAR*PLHQPRTSACWWQV
Trigger: GACCTGCCACCAGCACGCTGATGTTCGTGGCTGGTGTAGTGGGCAACGGGCTGGCATTGGGCATCCTGGGTGCCCGACGGAGGTCACACC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS CCA 90 bp TCCCACAGAGCAGCCGTCACCACCAGTCAGAGGCACAGCAGTCAATaGTGCCACCTGTCCCGTGCCCCAGGACGACAGGGGCACCCAGCT +
Preference number: 5 (lower is better)
Translates to: SHRAAVTTSQRHSSQ*CHLSRAPGRQGHPA
Trigger: AGCTGGGTGCCCCTGTCGTCCTGGGGCACGGGACAGGTGGCACCATTGACTGCTGTGCCTCTGACTGGTGGTGACGGCTGCTCTGTGGGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS GCA 90 bp ACACCGCAAAGGCCGATGGGTGTGACCTCCGTCGGGCACCCAGGATaGCCAATGCCAGCCCGTTGCCCACTACACCAGCCACGAACATCA +
Preference number: 5 (lower is better)
Translates to: TPQRPMGVTSVGHPG*PMPARCPLHQPRTS
Trigger: TGATGTTCGTGGCTGGTGTAGTGGGCAACGGGCTGGCATTGGGCATCCTGGGTGCCCGACGGAGGTCACACCCATCGGCCTTTGCGGTGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS CCA 90 bp GGCGTTGAAGCGGAAGGCGAGGAGGTCCCCCATCTCTCTGCTGTCTaGGGCGATGGCCTGAGTGAAGCCTCGGATCATGAGAGGCAGGGA +
Preference number: 5 (lower is better)
Translates to: GVEAEGEEVPHLSAV*GDGLSEASDHERQG
Trigger: TCCCTGCCTCTCATGATCCGAGGCTTCACTCAGGCCATCGCCCCAGACAGCAGAGAGATGGGGGACCTCCTCGCCTTCCGCTTCAACGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS GCA 90 bp GGCCAGGCCCAGCAGAGAGCTGTTTCGAGCATAGGCCACAAACACTaGAGGGCTCAAGAAGCACGTGCCCAGCAGATCCGTCACCGCCAG +
Preference number: 5 (lower is better)
Translates to: GQAQQRAVSSIGHKH*RAQEARAQQIRHRQ
Trigger: CTGGCGGTGACGGATCTGCTGGGCACGTGCTTCTTGAGCCCTGCAGTGTTTGTGGCCTATGCTCGAAACAGCTCTCTGCTGGGCCTGGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS-3UTR CAA 90 bp ACCCTCTTTCCAAGGCCTCTAGCCACCATACCGAAGGAGGAGAAGCAGCAGCAGCCCAATGCCAGCCCGTaGCCCACTACACCAGCCACG +
Preference number: 5 (lower is better)
Translates to: TLFPRPLATIPKEEKQQQPNASP*PTTPAT
Trigger: CGTGGCTGGTGTAGTGGGCAACGGGCTGGCATTGGG...CTGCTGCTGCTTCTCCTCCTTCGGTATGGTGGCTAGAGGCCTTGGAAAGAGGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS GCA 90 bp GGTCATGAGGGCCAGCAGAATCAGGTGGTAAACTTCATCCTCTCGTaGCCGAGAGGTCGGTACAAACGAGCCATGGTGGCGTCTCGAGTC +
Preference number: 5 (lower is better)
Translates to: GHEGQQNQVVNFILS*PRGRYKRAMVASRV
Trigger: GACTCGAGACGCCACCATGGCTCGTTTGTACCGACCTCTCGGGCACGAGAGGATGAAGTTTACCACCTGATTCTGCTGGCCCTCATGACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086101.6
CDS GCA 90 bp GGTCATGAGGGCCAGCAGAATCAGGTGGTAAACTTCATCCTCTCGTaGCCGAGAGGTCGGTACAAACGAGCCATGGTGGCGTCTCTGTTG +
Preference number: 5 (lower is better)
Translates to: GHEGQQNQVVNFILS*PRGRYKRAMVASLL
Trigger: CAACAGAGACGCCACCATGGCTCGTTTGTACCGACCTCTCGGGCACGAGAGGATGAAGTTTACCACCTGATTCTGCTGGCCCTCATGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS-3UTR CAA 90 bp GCACACACCTCCACACCCAGCTTACCTCTGCCTGTTTTCTCTTCTCCCGATTCTATGGGGTTGAAGGCGTaGAAGCGGAAGGCGAGGAGG +
Preference number: 5 (lower is better)
Translates to: AHTSTPSLPLPVFSSPDSMGLKA*KRKARR
Trigger: CCTCCTCGCCTTCCGCTTCAACGCCTTCAACCCCAT...AGAATCGGGAGAAGAGAAAACAGGCAGAGGTAAGCTGGGTGTGGAGGTGTGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS CCA 90 bp TGGACAGAACGGGCACACAGGCAACACAACCAGAACTTGAGGCGTTaGAAGACAGCCTTTCGGAAAAGGATGAAGACCCAGGGGTCCAGG +
Preference number: 5 (lower is better)
Translates to: WTERAHRQHNQNLRR*KTAFRKRMKTQGSR
Trigger: CCTGGACCCCTGGGTCTTCATCCTTTTCCGAAAGGCTGTCTTCCAACGCCTCAAGTTCTGGTTGTGTTGCCTGTGTGCCCGTTCTGTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS-3UTR CAA 90 bp ATCCTAGGAAGCATGCCTGTGAAGTCCTTTGGAGCCTCTGCATGCTACATCACCGGGTCCAGGATGGGGTaGAAGGCGTTGAAGCGGAAG +
Preference number: 5 (lower is better)
Translates to: ILGSMPVKSFGASACYITGSRMG*KALKRK
Trigger: CTTCCGCTTCAACGCCTTCAACCCCATCCTGGACCC...GGTGATGTAGCATGCAGAGGCTCCAAAGGACTTCACAGGCATGCTTCCTAGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS-3UTR CAA 90 bp CAGTACCTGAGGACTGACTGGTCAACTCAGACTGGTTTGTTTTGTGGTTTTATCATGGGGTTGAAGGCGTaGAAGCGGAAGGCGAGGAGG +
Preference number: 5 (lower is better)
Translates to: QYLRTDWSTQTGLFCGFIMGLKA*KRKARR
Trigger: CCTCCTCGCCTTCCGCTTCAACGCCTTCAACCCCAT...GATAAAACCACAAAACAAACCAGTCTGAGTTGACCAGTCAGTCCTCAGGTACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS-3UTR CAA 90 bp CAGTACCTGAGGACTGACTGGTCAACTCAGACTGGTTTGTTTTGTGGTTTTATCGGGTCCAGGATGGGGTaGAAGGCGTTGAAGCGGAAG +
Preference number: 5 (lower is better)
Translates to: QYLRTDWSTQTGLFCGFIGSRMG*KALKRK
Trigger: CTTCCGCTTCAACGCCTTCAACCCCATCCTGGACCC...GATAAAACCACAAAACAAACCAGTCTGAGTTGACCAGTCAGTCCTCAGGTACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS TCA 72 bp GCGGCCCGTCCAGCTGGGCGTACAGGTAGGGGTGACTaGGTGCCAGGCACCGCTCCACAGCCATGGCAAAGA +
Preference number: 6 (lower is better)
Translates to: AARPAGRTGRGD*VPGTAPQPWQR
Trigger: TCTTTGCCATGGCTGTGGAGCGGTGCCTGGCACTCAGTCACCCCTACCTGTACGCCCAGCTGGACGGGCCGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS GCA 72 bp AGGCCGATGGGTGTGACCTCCGTCGGGCACCCAGGATaGCCAATGCCAGCCCGTTGCCCACTACACCAGCCA +
Preference number: 6 (lower is better)
Translates to: RPMGVTSVGHPG*PMPARCPLHQP
Trigger: TGGCTGGTGTAGTGGGCAACGGGCTGGCATTGGGCATCCTGGGTGCCCGACGGAGGTCACACCCATCGGCCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS TCA 72 bp CAGCCCAGTGACCAACACCGCAAAGGCCGATGGGTGTaGCCTCCGTCGGGCACCCAGGATGCCCAATGCCAG +
Preference number: 6 (lower is better)
Translates to: QPSDQHRKGRWV*PPSGTQDAQCQ
Trigger: CTGGCATTGGGCATCCTGGGTGCCCGACGGAGGTCACACCCATCGGCCTTTGCGGTGTTGGTCACTGGGCTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS TCA 72 bp AGCACGTGCCCAGCAGATCCGTCACCGCCAGCCCAGTaGCCAACACCGCAAAGGCCGATGGGTGTGACCTCC +
Preference number: 6 (lower is better)
Translates to: STCPADPSPPAQ*PTPQRPMGVTS
Trigger: GGAGGTCACACCCATCGGCCTTTGCGGTGTTGGTCACTGGGCTGGCGGTGACGGATCTGCTGGGCACGTGCT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS GCA 72 bp TCAGAGGCACAGCAGTCAATGGTGCCACCTGTCCCGTaGCCCAGGACGACAGGGGCACCCAGCTCCCTTCCT +
Preference number: 6 (lower is better)
Translates to: SEAQQSMVPPVP*PRTTGAPSSLP
Trigger: AGGAAGGGAGCTGGGTGCCCCTGTCGTCCTGGGGCACGGGACAGGTGGCACCATTGACTGCTGTGCCTCTGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS GCA 72 bp TCCGTCGGGCACCCAGGATGCCCAATGCCAGCCCGTTaGCCACTACACCAGCCACGAACATCAGCGTGCTGG +
Preference number: 6 (lower is better)
Translates to: SVGHPGCPMPAR*PLHQPRTSACW
Trigger: CCAGCACGCTGATGTTCGTGGCTGGTGTAGTGGGCAACGGGCTGGCATTGGGCATCCTGGGTGCCCGACGGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS CCA 72 bp GGGGCAGTGAGCAGAAGAGGCAGCAGAAAGCGTAGATaGAAGGCAAGGCAAAGCGGGCGCAGCGCGGCCCGT +
Preference number: 6 (lower is better)
Translates to: GAVSRRGSRKRR*KARQSGRSAAR
Trigger: ACGGGCCGCGCTGCGCCCGCTTTGCCTTGCCTTCCATCTACGCTTTCTGCTGCCTCTTCTGCTCACTGCCCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS TCA 72 bp GTGCCAGGCACCGCTCCACAGCCATGGCAAAGAGGATaGGCGTGGAGGCCAGGCCGAAGAACGTCATGGCGA +
Preference number: 6 (lower is better)
Translates to: VPGTAPQPWQRG*AWRPGRRTSWR
Trigger: TCGCCATGACGTTCTTCGGCCTGGCCTCCACGCTCATCCTCTTTGCCATGGCTGTGGAGCGGTGCCTGGCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS GCA 72 bp CCCGTCCAGCTGGGCGTACAGGTAGGGGTGACTGAGTaGCAGGCACCGCTCCACAGCCATGGCAAAGAGGAT +
Preference number: 6 (lower is better)
Translates to: PVQLGVQVGVTE*QAPLHSHGKED
Trigger: ATCCTCTTTGCCATGGCTGTGGAGCGGTGCCTGGCACTCAGTCACCCCTACCTGTACGCCCAGCTGGACGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS CCA 72 bp GCGGAAGGCGAGGAGGTCCCCCATCTCTCTGCTGTCTaGGGCGATGGCCTGAGTGAAGCCTCGGATCATGAG +
Preference number: 6 (lower is better)
Translates to: AEGEEVPHLSAV*GDGLSEASDHE
Trigger: CTCATGATCCGAGGCTTCACTCAGGCCATCGCCCCAGACAGCAGAGAGATGGGGGACCTCCTCGCCTTCCGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS CCA 72 bp CAGGACGACAGGGGCACCCAGCTCCCTTCCTTAGCCTaGAGAGAAGTAGGAGCCGGTGGGTCTCTTCTCCCC +
Preference number: 6 (lower is better)
Translates to: QDDRGTQLPSLA*REVGAGGSLLP
Trigger: GGGGAGAAGAGACCCACCGGCTCCTACTTCTCTCCAGGCTAAGGAAGGGAGCTGGGTGCCCCTGTCGTCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS GCA 72 bp GCCCGTTGCCCACTACACCAGCCACGAACATCAGCGTaGTGGTGGCAGGTCCTACCGAGTCTTGAACGTAGG +
Preference number: 6 (lower is better)
Translates to: ARCPLHQPRTSA*WWQVLPSLERR
Trigger: CCTACGTTCAAGACTCGGTAGGACCTGCCACCAGCACGCTGATGTTCGTGGCTGGTGTAGTGGGCAACGGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS CCA 72 bp GCTCCCTTCCTTAGCCTGGAGAGAAGTAGGAGCCGGTaGGTCTCTTCTCCCCGATGCAGGTCTGGAAAGGGG +
Preference number: 6 (lower is better)
Translates to: APFLSLERSRSR*VSSPRCRSGKG
Trigger: CCCCTTTCCAGACCTGCATCGGGGAGAAGAGACCCACCGGCTCCTACTTCTCTCCAGGCTAAGGAAGGGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS CAA 90 bp ACCAGCCACGAACATCAGCGTGCTGGTGGCAGGTCCTACCGAGTCTaGAACGTAGGTGATATTCCAGCAGGAGCCTGCCATGCCCTGCCA +
Preference number: 6 (lower is better)
Translates to: TSHEHQRAGGRSYRV*NVGDIPAGACHALP
Trigger: TGGCAGGGCATGGCAGGCTCCTGCTGGAATATCACCTACGTTCAAGACTCGGTAGGACCTGCCACCAGCACGCTGATGTTCGTGGCTGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS CAA 90 bp TCGTGCCCGAGAGGTCGGTACAAACGAGCCATGGTGGCGTCTCTGTaGGCGGTACATGTGATAGAGGCTGAGAGTGACGGAGCCGTTGCA +
Preference number: 6 (lower is better)
Translates to: SCPRGRYKRAMVASL*AVHVIEAESDGAVA
Trigger: TGCAACGGCTCCGTCACTCTCAGCCTCTATCACATGTACCGCCAACAGAGACGCCACCATGGCTCGTTTGTACCGACCTCTCGGGCACGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS TCA 72 bp ACGAGCCATGGTGGCGTCTCGAGTCTTGAACGTAGGTaGTATTCCAGCAGGAGCCTGCCATGCCCTGCCACT +
Preference number: 6 (lower is better)
Translates to: TSHGGVSSLERR*YSSRSLPCPAT
Trigger: AGTGGCAGGGCATGGCAGGCTCCTGCTGGAATATCACCTACGTTCAAGACTCGAGACGCCACCATGGCTCGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086101.6
CDS TCA 72 bp TGCTGGTGGCAGGTCCTACCGAGTCTTGAACGTAGGTaGTATTCCAGCAGGAGCCTGCCATGCCCTGCCACT +
Preference number: 6 (lower is better)
Translates to: CWWQVLPSLERR*YSSRSLPCPAT
Trigger: AGTGGCAGGGCATGGCAGGCTCCTGCTGGAATATCACCTACGTTCAAGACTCGGTAGGACCTGCCACCAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS GCA 72 bp CAGCAGAGAGCTGTTTCGAGCATAGGCCACAAACACTaGAGGGCTCAAGAAGCACGTGCCCAGCAGATCCGT +
Preference number: 6 (lower is better)
Translates to: QQRAVSSIGHKH*RAQEARAQQIR
Trigger: ACGGATCTGCTGGGCACGTGCTTCTTGAGCCCTGCAGTGTTTGTGGCCTATGCTCGAAACAGCTCTCTGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS CAA 72 bp GGTCGGTACAAACGAGCCATGGTGGCGTCTCGAGTCTaGAACGTAGGTGATATTCCAGCAGGAGCCTGCCAT +
Preference number: 6 (lower is better)
Translates to: GRYKRAMVASRV*NVGDIPAGACH
Trigger: ATGGCAGGCTCCTGCTGGAATATCACCTACGTTCAAGACTCGAGACGCCACCATGGCTCGTTTGTACCGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086101.6
CDS CAA 72 bp GAACATCAGCGTGCTGGTGGCAGGTCCTACCGAGTCTaGAACGTAGGTGATATTCCAGCAGGAGCCTGCCAT +
Preference number: 6 (lower is better)
Translates to: EHQRAGGRSYRV*NVGDIPAGACH
Trigger: ATGGCAGGCTCCTGCTGGAATATCACCTACGTTCAAGACTCGGTAGGACCTGCCACCAGCACGCTGATGTTC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS CAA 72 bp AGAGGTCGGTACAAACGAGCCATGGTGGCGTCTCTGTaGGCGGTACATGTGATAGAGGCTGAGAGTGACGGA +
Preference number: 6 (lower is better)
Translates to: RGRYKRAMVASL*AVHVIEAESDG
Trigger: TCCGTCACTCTCAGCCTCTATCACATGTACCGCCAACAGAGACGCCACCATGGCTCGTTTGTACCGACCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144408.2
CDS CAA 90 bp ATGGACAGAACGGGCACACAGGCAACACAACCAGAACTTGAGGCGTaGGAAGACAGCCTTTCGGAAAAGGATGAAGACCCAGGGGTCCAG +
Preference number: 6 (lower is better)
Translates to: MDRTGTQATQPELEA*EDSLSEKDEDPGVQ
Trigger: CTGGACCCCTGGGTCTTCATCCTTTTCCGAAAGGCTGTCTTCCAACGCCTCAAGTTCTGGTTGTGTTGCCTGTGTGCCCGTTCTGTCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS CCA 72 bp CGGGCACACAGGCAACACAACCAGAACTTGAGGCGTTaGAAGACAGCCTTTCGGAAAAGGATGAAGACCCAG +
Preference number: 6 (lower is better)
Translates to: RAHRQHNQNLRR*KTAFRKRMKTQ
Trigger: CTGGGTCTTCATCCTTTTCCGAAAGGCTGTCTTCCAACGCCTCAAGTTCTGGTTGTGTTGCCTGTGTGCCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS CAA 72 bp ACGGGCACACAGGCAACACAACCAGAACTTGAGGCGTaGGAAGACAGCCTTTCGGAAAAGGATGAAGACCCA +
Preference number: 6 (lower is better)
Translates to: TGTQATQPELEA*EDSLSEKDEDP
Trigger: TGGGTCTTCATCCTTTTCCGAAAGGCTGTCTTCCAACGCCTCAAGTTCTGGTTGTGTTGCCTGTGTGCCCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS CAA 72 bp TGGACAGAACGGGCACACAGGCAACACAACCAGAACTaGAGGCGTTGGAAGACAGCCTTTCGGAAAAGGATG +
Preference number: 6 (lower is better)
Translates to: WTERAHRQHNQN*RRWKTAFRKRM
Trigger: CATCCTTTTCCGAAAGGCTGTCTTCCAACGCCTCAAGTTCTGGTTGTGTTGCCTGTGTGCCCGTTCTGTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2
CDS CAA 90 bp AAATCCCCATGGACAGAACGGGCACACAGGCAACACAACCAGAACTaGAGGCGTTGGAAGACAGCCTTTCGGAAAAGGATGAAGACCCAG +
Preference number: 6 (lower is better)
Translates to: KSPWTERAHRQHNQN*RRWKTAFRKRMKTQ
Trigger: CTGGGTCTTCATCCTTTTCCGAAAGGCTGTCTTCCAACGCCTCAAGTTCTGGTTGTGTTGCCTGTGTGCCCGTTCTGTCCATGGGGATTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086101.6
ENSMUST00000144408.2