Pregenerated sensors for PTGES3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071072Ensembl transcript IDs: ENSMUST00000052798.14
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTTTTATTTCAGTCAAGTCACAACACTTGTCTGGCTGCTGCCAAGTaGCCACAGCTTCCCATTTACAGACACACTTTACAGGGTTTCCTG | + |
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Preference number: 1 (lower is better) Translates to: LLFQSSHNTCLAAAK*PQLPIYRHTLQGFL Trigger: CAGGAAACCCTGTAAAGTGTGTCTGTAAATGGGAAGCTGTGGGCACTTGGCAGCAGCCAGACAAGTGTTGTGACTTGACTGAAATAAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052798.14 |
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| 3UTR-3UTR CCA 90 bp | CAGTCAAGTCACAACACTTGTCTGGCTGCTGCCAAGTGCCCACAGCTTCCCATTAAAAAGGTTGACAACTaGGTTAGAGGAGGCAAGTAC | + |
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Preference number: 2 (lower is better) Translates to: QSSHNTCLAAAKCPQLPIKKVDN*VRGGKY Trigger: GTACTTGCCTCCTCTAACCCAGTTGTCAACCTTTTT...AATGGGAAGCTGTGGGCACTTGGCAGCAGCCAGACAAGTGTTGTGACTTGACTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052798.14 |
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| 3UTR-3UTR CCA 90 bp | ACAACACTTGTCTGGCTGCTGCCAAGTGCCCACAGCTTCCCATTTACAGACACAGGATCAACTGCCTCATaGAATCATGGGAAATGTTCA | + |
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Preference number: 2 (lower is better) Translates to: TTLVWLLPSAHSFPFTDTGSTAS*NHGKCS Trigger: TGAACATTTCCCATGATTCCATGAGGCAGTTGATCC...TGTGTCTGTAAATGGGAAGCTGTGGGCACTTGGCAGCAGCCAGACAAGTGTTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052798.14 |
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| 3UTR-3UTR TCA 90 bp | CAGTCAAGTCACAACACTTGTCTGGCTGCTGCCAAGTGCCCACAGCTTCCCATTAATACACCTGAACACTaGCAAGTGATCACATACAAT | + |
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Preference number: 2 (lower is better) Translates to: QSSHNTCLAAAKCPQLPINTPEH*QVITYN Trigger: ATTGTATGTGATCACTTGTCAGTGTTCAGGTGTATT...AATGGGAAGCTGTGGGCACTTGGCAGCAGCCAGACAAGTGTTGTGACTTGACTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052798.14 |
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| 3UTR-3UTR GCA 90 bp | CTTTTATTTCAGTCAAGTCACAACACTTGTCTGGCTGCTGCCAAGTGCCCACAGTTGCCTAGGATCAACTaGCTCATGGAATCATGGGAA | + |
|
Preference number: 2 (lower is better) Translates to: LLFQSSHNTCLAAAKCPQLPRIN*LMESWE Trigger: TTCCCATGATTCCATGAGGCAGTTGATCCTAGGCAA...CTGTGGGCACTTGGCAGCAGCCAGACAAGTGTTGTGACTTGACTGAAATAAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052798.14 |
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| 3UTR-3UTR CCA 90 bp | TGGCTGCTGCCAAGTGCCCACAGCTTCCCATTTACAGACACACTTTACAGGGTTGGTATCCTGAAAGAATaGCAGGTTATCAGTTTAAGG | + |
|
Preference number: 2 (lower is better) Translates to: WLLPSAHSFPFTDTLYRVGILKE*QVISLR Trigger: CCTTAAACTGATAACCTGCCATTCTTTCAGGATACC...AACCCTGTAAAGTGTGTCTGTAAATGGGAAGCTGTGGGCACTTGGCAGCAGCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052798.14 |
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| 3UTR-3UTR CAA 90 bp | TGGCTGCTGCCAAGTGCCCACAGCTTCCCATTTACAGACACACTTTACAGGGTTGTACAGCAAGCCTCTTaGTTCAAACAGGACCAGTCC | + |
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Preference number: 3 (lower is better) Translates to: WLLPSAHSFPFTDTLYRVVQQAS*FKQDQS Trigger: GGACTGGTCCTGTTTGAACAAAGAGGCTTGCTGTAC...AACCCTGTAAAGTGTGTCTGTAAATGGGAAGCTGTGGGCACTTGGCAGCAGCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052798.14 |
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| 3UTR GCA 72 bp | CAGTCAAGTCACAACACTTGTCTGGCTGCTGCCAAGTaGCCACAGCTTCCCATTTACAGACACACTTTACAG | + |
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Preference number: 3 (lower is better) Translates to: QSSHNTCLAAAK*PQLPIYRHTLQ Trigger: CTGTAAAGTGTGTCTGTAAATGGGAAGCTGTGGGCACTTGGCAGCAGCCAGACAAGTGTTGTGACTTGACTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052798.14 |
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| 3UTR-3UTR CAA 90 bp | TGGCTGCTGCCAAGTGCCCACAGCTTCCCATTTACAGACACACTTTACAGGGTTATGAAATGCAATTATTaGTCCGAGCTGCTGGAGCAG | + |
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Preference number: 3 (lower is better) Translates to: WLLPSAHSFPFTDTLYRVMKCNY*SELLEQ Trigger: CTGCTCCAGCAGCTCGGACAAATAATTGCATTTCAT...AACCCTGTAAAGTGTGTCTGTAAATGGGAAGCTGTGGGCACTTGGCAGCAGCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052798.14 |
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| 3UTR GCA 72 bp | TTTATTTCAGTCAAGTCACAACACTTGTCTGGCTGCTaGCAAGTGCCCACAGCTTCCCATTTACAGACACAC | + |
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Preference number: 3 (lower is better) Translates to: FISVKSQHLSGC*QVPTASHLQTH Trigger: GTGTGTCTGTAAATGGGAAGCTGTGGGCACTTGGCAGCAGCCAGACAAGTGTTGTGACTTGACTGAAATAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052798.14 |
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| 3UTR CAA 72 bp | AACACATTCACTTTTATTTCAGTCAAGTCACAACACTaGTCTGGCTGCTGCCAAGTGCCCACAGCTTCCCAT | + |
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Preference number: 4 (lower is better) Translates to: NTFTFISVKSQH*SGCCQVPTASH Trigger: ATGGGAAGCTGTGGGCACTTGGCAGCAGCCAGACAAGTGTTGTGACTTGACTGAAATAAAAGTGAATGTGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052798.14 |
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