RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PTGDR (Mus musculus)

Ensembl gene IDs: ENSMUSG00000071489

Ensembl transcript IDs: ENSMUST00000095959.2

Found 80 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGTGCAGGTGACCGTGCAGGCCACTGGTGTAAGATTCCCTGGAGCTaGACTTACAGTGGTGTGAGGCACCTGTTGTGGGTTCTGGGAATC +
Preference number: 1 (lower is better)
Translates to: SAGDRAGHWCKIPWS*TYSGVRHLLWVLGI
Trigger: GATTCCCAGAACCCACAACAGGTGCCTCACACCACTGTAAGTCCAGCTCCAGGGAATCTTACACCAGTGGCCTGCACGGTCACCTGCACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR CCA 90 bp CACATGAGTGCAGGTGACCGTGCAGGCCACTGGTGTAAGATTCCCTaGAGCTGGACTTACAGTGGTGTGAGGCACCTGTTGTGGGTTCTG +
Preference number: 1 (lower is better)
Translates to: HMSAGDRAGHWCKIP*SWTYSGVRHLLWVL
Trigger: CAGAACCCACAACAGGTGCCTCACACCACTGTAAGTCCAGCTCCAGGGAATCTTACACCAGTGGCCTGCACGGTCACCTGCACTCATGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR TCA 90 bp GTGGGTTCTGGGAATCAAACTCAGGTCCTCTGGAAGAGAAGTAAATaGTCTTCAGTGCTGATCCCTCTCTCCATCTCTTCATGGGAGATA +
Preference number: 1 (lower is better)
Translates to: VGSGNQTQVLWKRSK*SSVLIPLSISSWEI
Trigger: TATCTCCCATGAAGAGATGGAGAGAGGGATCAGCACTGAAGATCATTTACTTCTCTTCCAGAGGACCTGAGTTTGATTCCCAGAACCCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR TCA 90 bp TGCTTCCAGACCAGACTTCAAAAGATCAGTTTCCTTTTTCCACTTTaGGTTGTTGACCCTAGTTATATCTTGTTTCATTTAACTACATGG +
Preference number: 1 (lower is better)
Translates to: CFQTRLQKISFLFPL*VVDPSYILFHLTTW
Trigger: CCATGTAGTTAAATGAAACAAGATATAACTAGGGTCAACAACTCAAAGTGGAAAAAGGAAACTGATCTTTTGAAGTCTGGTCTGGAAGCA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR-3UTR TCA 90 bp CCAGTGCCTTTCAGAGCTGTTTTTACTCTGGTTCAGCTAGCCCAGCTCACTGCAACAGAGGCTATGTCCTaGGTGGGCCTCCTACTGTGC +
Preference number: 2 (lower is better)
Translates to: PVPFRAVFTLVQLAQLTATEAMS*VGLLLC
Trigger: GCACAGTAGGAGGCCCACTCAGGACATAGCCTCTGT...TGCAGTGAGCTGGGCTAGCTGAACCAGAGTAAAAACAGCTCTGAAAGGCACTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR-3UTR TCA 90 bp CTGGTTCAGCTAGCCCAGCTCACTGCAGTCCCAGGTAACATCTCATTCCCTCTAGTGGTTATATGCACATaGGTGCAGGTGACCGTGCAG +
Preference number: 2 (lower is better)
Translates to: LVQLAQLTAVPGNISFPLVVICT*VQVTVQ
Trigger: CTGCACGGTCACCTGCACTCATGTGCATATAACCAC...TAGAGGGAATGAGATGTTACCTGGGACTGCAGTGAGCTGGGCTAGCTGAACCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR-3UTR CCA 90 bp GACTACCCTTGCCATCCCTGCTTCCAGACCAGACTTCAAAAGATCAGTTTCCTTGACCGTGCAGGCCACTaGTGTAAGATTCCCTGGAGC +
Preference number: 2 (lower is better)
Translates to: DYPCHPCFQTRLQKISFLDRAGH*CKIPWS
Trigger: GCTCCAGGGAATCTTACACCAGTGGCCTGCACGGTC...AAGGAAACTGATCTTTTGAAGTCTGGTCTGGAAGCAGGGATGGCAAGGGTAGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR-3UTR CCA 90 bp TTCCCAGTGCCTTTCAGAGCTGTTTTTACTCTGGTTCAGCTAGCCCAGCTCACTAGGCTATGTCCTGAGTaGGCCTCCTACTGTGCTCAA +
Preference number: 2 (lower is better)
Translates to: FPVPFRAVFTLVQLAQLTRLCPE*ASYCAQ
Trigger: TTGAGCACAGTAGGAGGCCCACTCAGGACATAGCCT...AGTGAGCTGGGCTAGCTGAACCAGAGTAAAAACAGCTCTGAAAGGCACTGGGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR-3UTR TCA 90 bp CTGAGTGTCGGAATGCTCAGGGACTCGGAAACTCTCTCCTATCCCCATCTACTGCCAAGCACGGCTCTTTaGATGTGTGCTGTATTTTCA +
Preference number: 2 (lower is better)
Translates to: LSVGMLRDSETLSYPHLLPSTAL*MCAVFS
Trigger: TGAAAATACAGCACACATTCAAAGAGCCGTGCTTGG...CAGTAGATGGGGATAGGAGAGAGTTTCCGAGTCCCTGAGCATTCCGACACTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR-3UTR TCA 90 bp CTGAGTGTCGGAATGCTCAGGGACTCGGAAACTCTCTCCTATCCCCATCTACTGAATGATCTTCAGTGCTaGTCCCTCTCTCCATCTCTT +
Preference number: 2 (lower is better)
Translates to: LSVGMLRDSETLSYPHLLNDLQC*SLSPSL
Trigger: AAGAGATGGAGAGAGGGATCAGCACTGAAGATCATT...CAGTAGATGGGGATAGGAGAGAGTTTCCGAGTCCCTGAGCATTCCGACACTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR-3UTR GCA 90 bp TACTGCTTTATAGCTGTCCAAAGCTCTTGCTGTGAGCTCCAGCTCTCTCCCAATAGAGGCAGGTGTGAATaGCACTGCCATCACCCTTCA +
Preference number: 2 (lower is better)
Translates to: YCFIAVQSSCCELQLSPNRGRCE*HCHHPS
Trigger: TGAAGGGTGATGGCAGTGGCATTCACACCTGCCTCT...ATTGGGAGAGAGCTGGAGCTCACAGCAAGAGCTTTGGACAGCTATAAAGCAGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR-3UTR TCA 90 bp CTGGTTCAGCTAGCCCAGCTCACTGCAGTCCCAGGTAACATCTCATTCCCTCTATGGAAGAGAAGTAAATaGTCTTCAGTGCTGATCCCT +
Preference number: 2 (lower is better)
Translates to: LVQLAQLTAVPGNISFPLWKRSK*SSVLIP
Trigger: AGGGATCAGCACTGAAGATCATTTACTTCTCTTCCA...TAGAGGGAATGAGATGTTACCTGGGACTGCAGTGAGCTGGGCTAGCTGAACCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR-3UTR GCA 90 bp TACTGCTTTATAGCTGTCCAAAGCTCTTGCTGTGAGCTCCAGCTCTCTCCCAATATTACTGACTACCCTTaGCATCCCTGCTTCCAGACC +
Preference number: 2 (lower is better)
Translates to: YCFIAVQSSCCELQLSPNITDYP*HPCFQT
Trigger: GGTCTGGAAGCAGGGATGGCAAGGGTAGTCAGTAAT...ATTGGGAGAGAGCTGGAGCTCACAGCAAGAGCTTTGGACAGCTATAAAGCAGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR-3UTR CCA 90 bp ACTACATGGGACTTGCAGGTCTTTTCCTGTAGCCCCCGAAATGGTCTCTCCAAAACCTGTTGTGGGTTCTaGGAATCAAACTCAGGTCCT +
Preference number: 2 (lower is better)
Translates to: TTWDLQVFSCSPRNGLSKTCCGF*ESNSGP
Trigger: AGGACCTGAGTTTGATTCCCAGAACCCACAACAGGT...TTTGGAGAGACCATTTCGGGGGCTACAGGAAAAGACCTGCAAGTCCCATGTAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR-3UTR CCA 90 bp CTGAGTGTCGGAATGCTCAGGGACTCGGAAACTCTCTCCTATCCCCATCTACTGGACCAAAAGGGTTTATaGATACAGAGTGACAACATA +
Preference number: 2 (lower is better)
Translates to: LSVGMLRDSETLSYPHLLDQKGL*IQSDNI
Trigger: TATGTTGTCACTCTGTATCCATAAACCCTTTTGGTC...CAGTAGATGGGGATAGGAGAGAGTTTCCGAGTCCCTGAGCATTCCGACACTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR-3UTR CCA 90 bp ATCTTGTTTCATTTAACTACATGGGACTTGCAGGTCTTTTCCTGTAGCCCCCGAGTGTGTGCTCACATGTaGTTATATGCACATGAGTGC +
Preference number: 2 (lower is better)
Translates to: ILFHLTTWDLQVFSCSPRVCAHM*LYAHEC
Trigger: GCACTCATGTGCATATAACCACATGTGAGCACACAC...TCGGGGGCTACAGGAAAAGACCTGCAAGTCCCATGTAGTTAAATGAAACAAGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR-3UTR GCA 90 bp AGGGACTCGGAAACTCTCTCCTATCCCCATCTACTGCTTTATAGCTGTCCAAAGGGCTCTTTGAATGTGTaGTGTATTTTCAGCTTATCA +
Preference number: 2 (lower is better)
Translates to: RDSETLSYPHLLLYSCPKGSLNV*CIFSLS
Trigger: TGATAAGCTGAAAATACAGCACACATTCAAAGAGCC...CTTTGGACAGCTATAAAGCAGTAGATGGGGATAGGAGAGAGTTTCCGAGTCCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR-3UTR CCA 90 bp AGGGACTCGGAAACTCTCTCCTATCCCCATCTACTGCTTTATAGCTGTCCAAAGCTCTCCATCTCTTCATaGGAGATAGTTTTTAAGGAT +
Preference number: 2 (lower is better)
Translates to: RDSETLSYPHLLLYSCPKLSISS*EIVFKD
Trigger: ATCCTTAAAAACTATCTCCCATGAAGAGATGGAGAG...CTTTGGACAGCTATAAAGCAGTAGATGGGGATAGGAGAGAGTTTCCGAGTCCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR CAA 90 bp GTTGTTGACCCTAGTTATATCTTGTTTCATTTAACTACATGGGACTaGCAGGTCTTTTCCTGTAGCCCCCGAAATGGTCTCTCCAAATAC +
Preference number: 2 (lower is better)
Translates to: VVDPSYILFHLTTWD*QVFSCSPRNGLSKY
Trigger: GTATTTGGAGAGACCATTTCGGGGGCTACAGGAAAAGACCTGCAAGTCCCATGTAGTTAAATGAAACAAGATATAACTAGGGTCAACAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR CCA 72 bp GCAGGTGACCGTGCAGGCCACTGGTGTAAGATTCCCTaGAGCTGGACTTACAGTGGTGTGAGGCACCTGTTG +
Preference number: 3 (lower is better)
Translates to: AGDRAGHWCKIP*SWTYSGVRHLL
Trigger: CAACAGGTGCCTCACACCACTGTAAGTCCAGCTCCAGGGAATCTTACACCAGTGGCCTGCACGGTCACCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR CCA 72 bp GACCGTGCAGGCCACTGGTGTAAGATTCCCTGGAGCTaGACTTACAGTGGTGTGAGGCACCTGTTGTGGGTT +
Preference number: 3 (lower is better)
Translates to: DRAGHWCKIPWS*TYSGVRHLLWV
Trigger: AACCCACAACAGGTGCCTCACACCACTGTAAGTCCAGCTCCAGGGAATCTTACACCAGTGGCCTGCACGGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR TCA 72 bp ACTGCCTGCTGCAGACCTTGCGTCCATTCCAGCATCTaGGTGTCGGAATGCTCAGGGACTCGGAAACTCTCT +
Preference number: 3 (lower is better)
Translates to: TACCRPCVHSSI*VSECSGTRKLS
Trigger: AGAGAGTTTCCGAGTCCCTGAGCATTCCGACACTCAGATGCTGGAATGGACGCAAGGTCTGCAGCAGGCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR CCA 72 bp TATATGCACATGAGTGCAGGTGACCGTGCAGGCCACTaGTGTAAGATTCCCTGGAGCTGGACTTACAGTGGT +
Preference number: 3 (lower is better)
Translates to: YMHMSAGDRAGH*CKIPWSWTYSG
Trigger: ACCACTGTAAGTCCAGCTCCAGGGAATCTTACACCAGTGGCCTGCACGGTCACCTGCACTCATGTGCATATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR-3UTR CAA 90 bp CTGAGTGTCGGAATGCTCAGGGACTCGGAAACTCTCTCCTATCCCCATCTACTGTCCAAGCACGGCTCTTaGAATGTGTGCTGTATTTTC +
Preference number: 3 (lower is better)
Translates to: LSVGMLRDSETLSYPHLLSKHGS*NVCCIF
Trigger: GAAAATACAGCACACATTCAAAGAGCCGTGCTTGGA...CAGTAGATGGGGATAGGAGAGAGTTTCCGAGTCCCTGAGCATTCCGACACTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR-3UTR CAA 90 bp GACTACCCTTGCCATCCCTGCTTCCAGACCAGACTTCAAAAGATCAGTTTCCTTTTAACTACATGGGACTaGCAGGTCTTTTCCTGTAGC +
Preference number: 3 (lower is better)
Translates to: DYPCHPCFQTRLQKISFLLTTWD*QVFSCS
Trigger: GCTACAGGAAAAGACCTGCAAGTCCCATGTAGTTAA...AAGGAAACTGATCTTTTGAAGTCTGGTCTGGAAGCAGGGATGGCAAGGGTAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR-3UTR CAA 90 bp CTGGTTCAGCTAGCCCAGCTCACTGCAGTCCCAGGTAACATCTCATTCCCTCTATTCCACTTTGAGTTGTaGACCCTAGTTATATCTTGT +
Preference number: 3 (lower is better)
Translates to: LVQLAQLTAVPGNISFPLFHFEL*TLVISC
Trigger: ACAAGATATAACTAGGGTCAACAACTCAAAGTGGAA...TAGAGGGAATGAGATGTTACCTGGGACTGCAGTGAGCTGGGCTAGCTGAACCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR TCA 72 bp GGGAATCAAACTCAGGTCCTCTGGAAGAGAAGTAAATaGTCTTCAGTGCTGATCCCTCTCTCCATCTCTTCA +
Preference number: 3 (lower is better)
Translates to: GNQTQVLWKRSK*SSVLIPLSISS
Trigger: TGAAGAGATGGAGAGAGGGATCAGCACTGAAGATCATTTACTTCTCTTCCAGAGGACCTGAGTTTGATTCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR GCA 72 bp CTCATTATGCAAATTACTGACTACCCTTGCCATCCCTaGTTCCAGACCAGACTTCAAAAGATCAGTTTCCTT +
Preference number: 3 (lower is better)
Translates to: LIMQITDYPCHP*FQTRLQKISFL
Trigger: AAGGAAACTGATCTTTTGAAGTCTGGTCTGGAAGCAGGGATGGCAAGGGTAGTCAGTAATTTGCATAATGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR GCA 72 bp AATCTTAGACTCATTATGCAAATTACTGACTACCCTTaGCATCCCTGCTTCCAGACCAGACTTCAAAAGATC +
Preference number: 3 (lower is better)
Translates to: NLRLIMQITDYP*HPCFQTRLQKI
Trigger: GATCTTTTGAAGTCTGGTCTGGAAGCAGGGATGGCAAGGGTAGTCAGTAATTTGCATAATGAGTCTAAGATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR CCA 72 bp GTTGACCCTAGTTATATCTTGTTTCATTTAACTACATaGGACTTGCAGGTCTTTTCCTGTAGCCCCCGAAAT +
Preference number: 3 (lower is better)
Translates to: VDPSYILFHLTT*DLQVFSCSPRN
Trigger: ATTTCGGGGGCTACAGGAAAAGACCTGCAAGTCCCATGTAGTTAAATGAAACAAGATATAACTAGGGTCAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR CCA 72 bp CCCCCGAAATGGTCTCTCCAAATACCTTACCTGATCTaGTTTCCCAACTCATTTCTCTTAAATATTATCTAC +
Preference number: 3 (lower is better)
Translates to: PPKWSLQIPYLI*FPNSFLLNIIY
Trigger: GTAGATAATATTTAAGAGAAATGAGTTGGGAAACCAGATCAGGTAAGGTATTTGGAGAGACCATTTCGGGGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR TCA 72 bp GATTTAAATTGTAAGGCTTTTCCAAGCACGGCTCTTTaGATGTGTGCTGTATTTTCAGCTTATCAGAACACG +
Preference number: 3 (lower is better)
Translates to: DLNCKAFPSTAL*MCAVFSAYQNT
Trigger: CGTGTTCTGATAAGCTGAAAATACAGCACACATTCAAAGAGCCGTGCTTGGAAAAGCCTTACAATTTAAATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS-3UTR TCA 90 bp CGTCCATTCCAGCATCTGAGTGTCGGAATGCTCAGGGACTCGGAAACTCTCTCCGGACCAGCAGCGCCATaGGGCTGGAGTAGAGCACAG +
Preference number: 4 (lower is better)
Translates to: RPFQHLSVGMLRDSETLSGPAAP*GWSRAQ
Trigger: CTGTGCTCTACTCCAGCCTCATGGCGCTGCTGGTCC...GGAGAGAGTTTCCGAGTCCCTGAGCATTCCGACACTCAGATGCTGGAATGGACG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS-3UTR GCA 90 bp CACATGAGTGCAGGTGACCGTGCAGGCCACTGGTGTAAGATTCCCTGGAGCTGGGTGCCTGGACAGTACTaGACGAACTTCCCAAAACCA +
Preference number: 4 (lower is better)
Translates to: HMSAGDRAGHWCKIPWSWVPGQY*TNFPKP
Trigger: TGGTTTTGGGAAGTTCGTGCAGTACTGTCCAGGCAC...CCAGCTCCAGGGAATCTTACACCAGTGGCCTGCACGGTCACCTGCACTCATGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR CAA 72 bp CCTCTTGTCTTTGAGAGGAACTGCCTGCTGCAGACCTaGCGTCCATTCCAGCATCTGAGTGTCGGAATGCTC +
Preference number: 4 (lower is better)
Translates to: PLVFERNCLLQT*RPFQHLSVGML
Trigger: GAGCATTCCGACACTCAGATGCTGGAATGGACGCAAGGTCTGCAGCAGGCAGTTCCTCTCAAAGACAAGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS-3UTR TCA 90 bp TACTGCTTTATAGCTGTCCAAAGCTCTTGCTGTGAGCTCCAGCTCTCTCCCAATTGCCCAGCAAGTCGGTaGCCGTCAAGCCACACACGA +
Preference number: 4 (lower is better)
Translates to: YCFIAVQSSCCELQLSPNCPASR*PSSHTR
Trigger: TCGTGTGTGGCTTGACGGTCACCGACTTGCTGGGCA...ATTGGGAGAGAGCTGGAGCTCACAGCAAGAGCTTTGGACAGCTATAAAGCAGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS-3UTR CCA 90 bp GGTGTGAATGCCACTGCCATCACCCTTCACAGAGGCTATGTCCTGAGTGGGCCTTCCACGTTACTTTGCTaGGAATGGCTGCTCCAGTTT +
Preference number: 4 (lower is better)
Translates to: GVNATAITLHRGYVLSGPSTLLC*EWLLQF
Trigger: AAACTGGAGCAGCCATTCCCAGCAAAGTAACGTGGA...AGGCCCACTCAGGACATAGCCTCTGTGAAGGGTGATGGCAGTGGCATTCACACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS-3UTR GCA 90 bp ATCTTGTTTCATTTAACTACATGGGACTTGCAGGTCTTTTCCTGTAGCCCCCGACCAGCGCCAGAAGATTaGCCAGAAGCCCCGCACCGA +
Preference number: 4 (lower is better)
Translates to: ILFHLTTWDLQVFSCSPRPAPED*PEAPHR
Trigger: TCGGTGCGGGGCTTCTGGGCAATCTTCTGGCGCTGG...TCGGGGGCTACAGGAAAAGACCTGCAAGTCCCATGTAGTTAAATGAAACAAGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS-3UTR CCA 90 bp CTGGTTCAGCTAGCCCAGCTCACTGCAGTCCCAGGTAACATCTCATTCCCTCTAAGGAAACGCAAGGCTTaGAGGTCTTCTGAGTCTCCT +
Preference number: 4 (lower is better)
Translates to: LVQLAQLTAVPGNISFPLRKRKA*RSSESP
Trigger: AGGAGACTCAGAAGACCTCCAAGCCTTGCGTTTCCT...TAGAGGGAATGAGATGTTACCTGGGACTGCAGTGAGCTGGGCTAGCTGAACCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS-3UTR GCA 90 bp CTGTTGTGGGTTCTGGGAATCAAACTCAGGTCCTCTGGAAGAGAAGTAAATGATGTTGCACACCACGGTTaGGAGGACCAGCAGCGCCAT +
Preference number: 4 (lower is better)
Translates to: LLWVLGIKLRSSGREVNDVAHHG*EDQQRH
Trigger: ATGGCGCTGCTGGTCCTCGCAACCGTGGTGTGCAAC...ATCATTTACTTCTCTTCCAGAGGACCTGAGTTTGATTCCCAGAACCCACAACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS-3UTR CCA 90 bp GACTACCCTTGCCATCCCTGCTTCCAGACCAGACTTCAAAAGATCAGTTTCCTTCCCTTTCCACCCAGGTaGATGTCTGACAGCGATAGG +
Preference number: 4 (lower is better)
Translates to: DYPCHPCFQTRLQKISFLPFPPR*MSDSDR
Trigger: CCTATCGCTGTCAGACATCCACCTGGGTGGAAAGGG...AAGGAAACTGATCTTTTGAAGTCTGGTCTGGAAGCAGGGATGGCAAGGGTAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS-3UTR CCA 90 bp GGTGTGAATGCCACTGCCATCACCCTTCACAGAGGCTATGTCCTGAGTGGGCCTAATGAACGCTCCTTGTaGATCATCTGGATGAAACAC +
Preference number: 4 (lower is better)
Translates to: GVNATAITLHRGYVLSGPNERSL*IIWMKH
Trigger: GTGTTTCATCCAGATGATCCACAAGGAGCGTTCATT...AGGCCCACTCAGGACATAGCCTCTGTGAAGGGTGATGGCAGTGGCATTCACACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS-3UTR CCA 90 bp TTCCCAGTGCCTTTCAGAGCTGTTTTTACTCTGGTTCAGCTAGCCCAGCTCACTGAAACACCAGGTGCCTaGACAGTACTGCACGAACTT +
Preference number: 4 (lower is better)
Translates to: FPVPFRAVFTLVQLAQLTETPGA*TVLHEL
Trigger: AAGTTCGTGCAGTACTGTCCAGGCACCTGGTGTTTC...AGTGAGCTGGGCTAGCTGAACCAGAGTAAAAACAGCTCTGAAAGGCACTGGGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS-3UTR CCA 90 bp CTGACTACCCTTGCCATCCCTGCTTCCAGACCAGACTTCAAAAGATCAGTTTCCCATAGAGGTTGTACATaGCACCCAGGTTGCACACCA +
Preference number: 4 (lower is better)
Translates to: LTTLAIPASRPDFKRSVSHRGCT*HPGCTP
Trigger: TGGTGTGCAACCTGGGTGCCATGTACAACCTCTATG...GGAAACTGATCTTTTGAAGTCTGGTCTGGAAGCAGGGATGGCAAGGGTAGTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR CAA 72 bp TGGTTTTCTGCTGACCAAGAAATATGGGAGCTCCTCTaGTCTTTGAGAGGAACTGCCTGCTGCAGACCTTGC +
Preference number: 4 (lower is better)
Translates to: WFSADQEIWELL*SLRGTACCRPC
Trigger: GCAAGGTCTGCAGCAGGCAGTTCCTCTCAAAGACAAGAGGAGCTCCCATATTTCTTGGTCAGCAGAAAACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS-3UTR CCA 90 bp TTCCCAGTGCCTTTCAGAGCTGTTTTTACTCTGGTTCAGCTAGCCCAGCTCACTTCCTTGTGGATCATCTaGATGAAACACCAGGTGCCT +
Preference number: 4 (lower is better)
Translates to: FPVPFRAVFTLVQLAQLTSLWII*MKHQVP
Trigger: AGGCACCTGGTGTTTCATCCAGATGATCCACAAGGA...AGTGAGCTGGGCTAGCTGAACCAGAGTAAAAACAGCTCTGAAAGGCACTGGGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS-3UTR CCA 90 bp CTGTTGTGGGTTCTGGGAATCAAACTCAGGTCCTCTGGAAGAGAAGTAAATGATGCCAGCAGCACAAAGTaGTCCAGCTCCTCCAAAGGA +
Preference number: 4 (lower is better)
Translates to: LLWVLGIKLRSSGREVNDASSTK*SSSSKG
Trigger: TCCTTTGGAGGAGCTGGACCACTTTGTGCTGCTGGC...ATCATTTACTTCTCTTCCAGAGGACCTGAGTTTGATTCCCAGAACCCACAACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS-3UTR TCA 90 bp ATCTTGTTTCATTTAACTACATGGGACTTGCAGGTCTTTTCCTGTAGCCCCCGATGTGGATCATCTGGATaGAACACCAGGTGCCTGGAC +
Preference number: 4 (lower is better)
Translates to: ILFHLTTWDLQVFSCSPRCGSSG*NTRCLD
Trigger: GTCCAGGCACCTGGTGTTTCATCCAGATGATCCACA...TCGGGGGCTACAGGAAAAGACCTGCAAGTCCCATGTAGTTAAATGAAACAAGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS-3UTR GCA 90 bp GACTACCCTTGCCATCCCTGCTTCCAGACCAGACTTCAAAAGATCAGTTTCCTTTTTGCTGGGAATGGCTaGTCCAGTTTCTGTAGATCA +
Preference number: 4 (lower is better)
Translates to: DYPCHPCFQTRLQKISFLFAGNG*SSFCRS
Trigger: TGATCTACAGAAACTGGAGCAGCCATTCCCAGCAAA...AAGGAAACTGATCTTTTGAAGTCTGGTCTGGAAGCAGGGATGGCAAGGGTAGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS-3UTR CCA 90 bp CTGTTGTGGGTTCTGGGAATCAAACTCAGGTCCTCTGGAAGAGAAGTAAATGATTCCAGGGGTCCACTATaGAAATCACAGACAGGAAAC +
Preference number: 4 (lower is better)
Translates to: LLWVLGIKLRSSGREVNDSRGPL*KSQTGN
Trigger: GTTTCCTGTCTGTGATTTCCATAGTGGACCCCTGGA...ATCATTTACTTCTCTTCCAGAGGACCTGAGTTTGATTCCCAGAACCCACAACAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS-3UTR TCA 90 bp AGGGACTCGGAAACTCTCTCCTATCCCCATCTACTGCTTTATAGCTGTCCAAAGAGATCAGAGGTCTTGTaGAAACCTTGTGAAATAACA +
Preference number: 4 (lower is better)
Translates to: RDSETLSYPHLLLYSCPKRSEVL*KPCEIT
Trigger: TGTTATTTCACAAGGTTTTCACAAGACCTCTGATCT...CTTTGGACAGCTATAAAGCAGTAGATGGGGATAGGAGAGAGTTTCCGAGTCCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR CAA 72 bp CCTAGTTATATCTTGTTTCATTTAACTACATGGGACTaGCAGGTCTTTTCCTGTAGCCCCCGAAATGGTCTC +
Preference number: 4 (lower is better)
Translates to: PSYILFHLTTWD*QVFSCSPRNGL
Trigger: GAGACCATTTCGGGGGCTACAGGAAAAGACCTGCAAGTCCCATGTAGTTAAATGAAACAAGATATAACTAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
3UTR CAA 72 bp AGCTTTACTGTAACAATGTGTGAGATGTTGCTAGGTTaGTTCAAGAATACCCACTACAAAATTACAAGCCTA +
Preference number: 4 (lower is better)
Translates to: SFTVTMCEMLLG*FKNTHYKITSL
Trigger: TAGGCTTGTAATTTTGTAGTGGGTATTCTTGAACAAACCTAGCAACATCTCACACATTGTTACAGTAAAGCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS GCA 90 bp AAGACCCCAGTCCCGAGCGCGCCAGCAGCACCAGCGCCAGAAGATTaGCCAGAAGCCCCGCACCGAAGAGCACAGCGCCCATCGTCGCCG +
Preference number: 5 (lower is better)
Translates to: KTPVPSAPAAPAPED*PEAPHRRAQRPSSP
Trigger: CGGCGACGATGGGCGCTGTGCTCTTCGGTGCGGGGCTTCTGGGCAATCTTCTGGCGCTGGTGCTGCTGGCGCGCTCGGGACTGGGGTCTT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS GCA 90 bp AAAGGGGAGCGCACAGAAAGCCAAGCAGAAGGCGGCCACGACCGGTaGCACCAGCACTCCCCGGCGCAAGGTGACGTGCCTTTGGTAGAA +
Preference number: 5 (lower is better)
Translates to: KGERTESQAEGGHDR*HQHSPAQGDVPLVE
Trigger: TTCTACCAAAGGCACGTCACCTTGCGCCGGGGAGTGCTGGTGGCACCGGTCGTGGCCGCCTTCTGCTTGGCTTTCTGTGCGCTCCCCTTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS-3UTR CAA 90 bp GGTGTGAATGCCACTGCCATCACCCTTCACAGAGGCTATGTCCTGAGTGGGCCTGGTTGCACACCACGGTaGCGAGGACCAGCAGCGCCA +
Preference number: 5 (lower is better)
Translates to: GVNATAITLHRGYVLSGPGCTPR*RGPAAP
Trigger: TGGCGCTGCTGGTCCTCGCAACCGTGGTGTGCAACC...AGGCCCACTCAGGACATAGCCTCTGTGAAGGGTGATGGCAGTGGCATTCACACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS CCA 90 bp GAGGATAGTGCCTCTGGCGCCTGTGCATGTCATAGAGGTTGTACATaGCACCCAGGTTGCACACCACGGTTGCGAGGACCAGCAGCGCCA +
Preference number: 5 (lower is better)
Translates to: EDSASGACACHRGCT*HPGCTPRLRGPAAP
Trigger: TGGCGCTGCTGGTCCTCGCAACCGTGGTGTGCAACCTGGGTGCCATGTACAACCTCTATGACATGCACAGGCGCCAGAGGCACTATCCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS-3UTR CAA 90 bp CACATGAGTGCAGGTGACCGTGCAGGCCACTGGTGTAAGATTCCCTGGAGCTGGGGGCTGATCAGACACTaGCCCAGCAAGTCGGTGACC +
Preference number: 5 (lower is better)
Translates to: HMSAGDRAGHWCKIPWSWGLIRH*PSKSVT
Trigger: GGTCACCGACTTGCTGGGCAAGTGTCTGATCAGCCC...CCAGCTCCAGGGAATCTTACACCAGTGGCCTGCACGGTCACCTGCACTCATGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS TCA 90 bp TGGCACCCAGGTTGCACACCACGGTTGCGAGGACCAGCAGCGCCATaGGGCTGGAGTAGAGCACAGAGAAGCCTATTACCGAAAATGAAC +
Preference number: 5 (lower is better)
Translates to: WHPGCTPRLRGPAAP*GWSRAQRSLLPKMN
Trigger: GTTCATTTTCGGTAATAGGCTTCTCTGTGCTCTACTCCAGCCTCATGGCGCTGCTGGTCCTCGCAACCGTGGTGTGCAACCTGGGTGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS GCA 90 bp CATGTCATAGAGGTTGTACATGGCACCCAGGTTGCACACCACGGTTaGGAGGACCAGCAGCGCCATGAGGCTGGAGTAGAGCACAGAGAA +
Preference number: 5 (lower is better)
Translates to: HVIEVVHGTQVAHHG*EDQQRHEAGVEHRE
Trigger: TTCTCTGTGCTCTACTCCAGCCTCATGGCGCTGCTGGTCCTCGCAACCGTGGTGTGCAACCTGGGTGCCATGTACAACCTCTATGACATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS-3UTR CAA 90 bp CGTCCATTCCAGCATCTGAGTGTCGGAATGCTCAGGGACTCGGAAACTCTCTCCCAAGGTGACGTGCCTTaGGTAGAAGAAGGGGTGTCC +
Preference number: 5 (lower is better)
Translates to: RPFQHLSVGMLRDSETLSQGDVP*VEEGVS
Trigger: GGACACCCCTTCTTCTACCAAAGGCACGTCACCTTG...GGAGAGAGTTTCCGAGTCCCTGAGCATTCCGACACTCAGATGCTGGAATGGACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS GCA 90 bp GCCCAAAGAAGGACATCAGGAAGGCGAACGTTTCGCATAACTGATTaGCTGAGGCAGGCAGCAGTTCCTTTAGGCTCTGGTTTTGCGCGT +
Preference number: 5 (lower is better)
Translates to: AQRRTSGRRTFRITD*LRQAAVPLGSGFAR
Trigger: ACGCGCAAAACCAGAGCCTAAAGGAACTGCTGCCTGCCTCAGGCAATCAGTTATGCGAAACGTTCGCCTTCCTGATGTCCTTCTTTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS TCA 90 bp GCTAGCCCAAAGAAGGACATCAGGAAGGCGAACGTTTCGCATAACTaGTTGCCTGAGGCAGGCAGCAGTTCCTTTAGGCTCTGGTTTTGC +
Preference number: 5 (lower is better)
Translates to: ASPKKDIRKANVSHN*LPEAGSSSFRLWFC
Trigger: GCAAAACCAGAGCCTAAAGGAACTGCTGCCTGCCTCAGGCAATCAGTTATGCGAAACGTTCGCCTTCCTGATGTCCTTCTTTGGGCTAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS CCA 90 bp ACAGAGAAGCCTATTACCGAAAATGAACGCTCCTTGTGGATCATCTaGATGAAACACCAGGTGCCTGGACAGTACTGCACGAACTTCCCA +
Preference number: 5 (lower is better)
Translates to: TEKPITENERSLWII*MKHQVPGQYCTNFP
Trigger: TGGGAAGTTCGTGCAGTACTGTCCAGGCACCTGGTGTTTCATCCAGATGATCCACAAGGAGCGTTCATTTTCGGTAATAGGCTTCTCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS TCA 90 bp AGAAGCCTATTACCGAAAATGAACGCTCCTTGTGGATCATCTGGATaGAACACCAGGTGCCTGGACAGTACTGCACGAACTTCCCAAAAC +
Preference number: 5 (lower is better)
Translates to: RSLLPKMNAPCGSSG*NTRCLDSTARTSQN
Trigger: GTTTTGGGAAGTTCGTGCAGTACTGTCCAGGCACCTGGTGTTTCATCCAGATGATCCACAAGGAGCGTTCATTTTCGGTAATAGGCTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS-3UTR CAA 90 bp CCAGTGCCTTTCAGAGCTGTTTTTACTCTGGTTCAGCTAGCCCAGCTCACTGCAGAGTCTCCTTCAGCTTaGTTCTCAAGTTTAAAGGCT +
Preference number: 5 (lower is better)
Translates to: PVPFRAVFTLVQLAQLTAESPSA*FSSLKA
Trigger: AGCCTTTAAACTTGAGAACAAAGCTGAAGGAGACTC...TGCAGTGAGCTGGGCTAGCTGAACCAGAGTAAAAACAGCTCTGAAAGGCACTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS TCA 90 bp CACTATGGAAATCACAGACAGGAAACGCAAGGCTTGGAGGTCTTCTaGGTCTCCTTCAGCTTTGTTCTCAAGTTTAAAGGCTCCATAGTA +
Preference number: 5 (lower is better)
Translates to: HYGNHRQETQGLEVF*VSFSFVLKFKGSIV
Trigger: TACTATGGAGCCTTTAAACTTGAGAACAAAGCTGAAGGAGACTCAGAAGACCTCCAAGCCTTGCGTTTCCTGTCTGTGATTTCCATAGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS CAA 90 bp CAAGACCCCAGTCCCGAGCGCGCCAGCAGCACCAGCGCCAGAAGATaGCCCAGAAGCCCCGCACCGAAGAGCACAGCGCCCATCGTCGCC +
Preference number: 6 (lower is better)
Translates to: QDPSPERASSTSARR*PRSPAPKSTAPIVA
Trigger: GGCGACGATGGGCGCTGTGCTCTTCGGTGCGGGGCTTCTGGGCAATCTTCTGGCGCTGGTGCTGCTGGCGCGCTCGGGACTGGGGTCTTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS CAA 72 bp AGTCCCGAGCGCGCCAGCAGCACCAGCGCCAGAAGATaGCCCAGAAGCCCCGCACCGAAGAGCACAGCGCCC +
Preference number: 6 (lower is better)
Translates to: SPERASSTSARR*PRSPAPKSTAP
Trigger: GGGCGCTGTGCTCTTCGGTGCGGGGCTTCTGGGCAATCTTCTGGCGCTGGTGCTGCTGGCGCGCTCGGGACT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS CAA 90 bp CACGACCGGTGCCACCAGCACTCCCCGGCGCAAGGTGACGTGCCTTaGGTAGAAGAAGGGGTGTCCCAGAGACAGCCAGCACTCCACCGC +
Preference number: 6 (lower is better)
Translates to: HDRCHQHSPAQGDVP*VEEGVSQRQPALHR
Trigger: GCGGTGGAGTGCTGGCTGTCTCTGGGACACCCCTTCTTCTACCAAAGGCACGTCACCTTGCGCCGGGGAGTGCTGGTGGCACCGGTCGTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS CAA 72 bp TGCCACCAGCACTCCCCGGCGCAAGGTGACGTGCCTTaGGTAGAAGAAGGGGTGTCCCAGAGACAGCCAGCA +
Preference number: 6 (lower is better)
Translates to: CHQHSPAQGDVP*VEEGVSQRQPA
Trigger: TGCTGGCTGTCTCTGGGACACCCCTTCTTCTACCAAAGGCACGTCACCTTGCGCCGGGGAGTGCTGGTGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS GCA 72 bp GAGGTTGTACATGGCACCCAGGTTGCACACCACGGTTaGGAGGACCAGCAGCGCCATGAGGCTGGAGTAGAG +
Preference number: 6 (lower is better)
Translates to: EVVHGTQVAHHG*EDQQRHEAGVE
Trigger: CTCTACTCCAGCCTCATGGCGCTGCTGGTCCTCGCAACCGTGGTGTGCAACCTGGGTGCCATGTACAACCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS TCA 72 bp GGTTGCACACCACGGTTGCGAGGACCAGCAGCGCCATaGGGCTGGAGTAGAGCACAGAGAAGCCTATTACCG +
Preference number: 6 (lower is better)
Translates to: GCTPRLRGPAAP*GWSRAQRSLLP
Trigger: CGGTAATAGGCTTCTCTGTGCTCTACTCCAGCCTCATGGCGCTGCTGGTCCTCGCAACCGTGGTGTGCAACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS GCA 72 bp AGGACATCAGGAAGGCGAACGTTTCGCATAACTGATTaGCTGAGGCAGGCAGCAGTTCCTTTAGGCTCTGGT +
Preference number: 6 (lower is better)
Translates to: RTSGRRTFRITD*LRQAAVPLGSG
Trigger: ACCAGAGCCTAAAGGAACTGCTGCCTGCCTCAGGCAATCAGTTATGCGAAACGTTCGCCTTCCTGATGTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS GCA 72 bp ATCATCTGGATGAAACACCAGGTGCCTGGACAGTACTaGACGAACTTCCCAAAACCAGCAAAGGGGAGCGCA +
Preference number: 6 (lower is better)
Translates to: IIWMKHQVPGQY*TNFPKPAKGSA
Trigger: TGCGCTCCCCTTTGCTGGTTTTGGGAAGTTCGTGCAGTACTGTCCAGGCACCTGGTGTTTCATCCAGATGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS CCA 72 bp CCTATTACCGAAAATGAACGCTCCTTGTGGATCATCTaGATGAAACACCAGGTGCCTGGACAGTACTGCACG +
Preference number: 6 (lower is better)
Translates to: PITENERSLWII*MKHQVPGQYCT
Trigger: CGTGCAGTACTGTCCAGGCACCTGGTGTTTCATCCAGATGATCCACAAGGAGCGTTCATTTTCGGTAATAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS TCA 72 bp TTACCGAAAATGAACGCTCCTTGTGGATCATCTGGATaGAACACCAGGTGCCTGGACAGTACTGCACGAACT +
Preference number: 6 (lower is better)
Translates to: LPKMNAPCGSSG*NTRCLDSTART
Trigger: AGTTCGTGCAGTACTGTCCAGGCACCTGGTGTTTCATCCAGATGATCCACAAGGAGCGTTCATTTTCGGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS CCA 72 bp ACAGAGAAGCCTATTACCGAAAATGAACGCTCCTTGTaGATCATCTGGATGAAACACCAGGTGCCTGGACAG +
Preference number: 6 (lower is better)
Translates to: TEKPITENERSL*IIWMKHQVPGQ
Trigger: CTGTCCAGGCACCTGGTGTTTCATCCAGATGATCCACAAGGAGCGTTCATTTTCGGTAATAGGCTTCTCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS TCA 72 bp GCTGGAGTAGAGCACAGAGAAGCCTATTACCGAAAATaGACGCTCCTTGTGGATCATCTGGATGAAACACCA +
Preference number: 6 (lower is better)
Translates to: AGVEHREAYYRK*TLLVDHLDETP
Trigger: TGGTGTTTCATCCAGATGATCCACAAGGAGCGTTCATTTTCGGTAATAGGCTTCTCTGTGCTCTACTCCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2
CDS TCA 72 bp AATGGCTGCTCCAGTTTCTGTAGATCAGAGGTCTTGTaGAAACCTTGTGAAATAACATCCGGAATACTGAAG +
Preference number: 6 (lower is better)
Translates to: NGCSSFCRSEVL*KPCEITSGILK
Trigger: CTTCAGTATTCCGGATGTTATTTCACAAGGTTTTCACAAGACCTCTGATCTACAGAAACTGGAGCAGCCATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095959.2