Pregenerated sensors for PTF1A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026735Ensembl transcript IDs: ENSMUST00000028068.3
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTCAGAAATAAACCAATTCTGATATTAAATAAGCACGGAGTTTCCTaGACAGAGTTCTTCCAGTTCTTCTGTCAAAGGTGCTTCAGGAAA | + |
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Preference number: 1 (lower is better) Translates to: LRNKPILILNKHGVS*TEFFQFFCQRCFRK Trigger: TTTCCTGAAGCACCTTTGACAGAAGAACTGGAAGAACTCTGTCCAGGAAACTCCGTGCTTATTTAATATCAGAATTGGTTTATTTCTGAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| 3UTR CCA 72 bp | AAACCAATTCTGATATTAAATAAGCACGGAGTTTCCTaGACAGAGTTCTTCCAGTTCTTCTGTCAAAGGTGC | + |
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Preference number: 3 (lower is better) Translates to: KPILILNKHGVS*TEFFQFFCQRC Trigger: GCACCTTTGACAGAAGAACTGGAAGAACTCTGTCCAGGAAACTCCGTGCTTATTTAATATCAGAATTGGTTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS-3UTR TCA 90 bp | AAGCACGGAGTTTCCTGGACAGAGTTCTTCCAGTTCTTCTGTCAAAGGTGCTTCGAGGCACGAGGGCGGTaGGCCAGGCGAGTAGGGGAA | + |
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Preference number: 4 (lower is better) Translates to: KHGVSWTEFFQFFCQRCFEARGR*ARRVGE Trigger: TTCCCCTACTCGCCTGGCTCACCGCCCTCGTGCCTC...GAAGCACCTTTGACAGAAGAACTGGAAGAACTCTGTCCAGGAAACTCCGTGCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS-3UTR TCA 90 bp | AAGCACGGAGTTTCCTGGACAGAGTTCTTCCAGTTCTTCTGTCAAAGGTGCTTCGTCACTGGGGGAGGGTaGACGGGTGCCTCGATGGCA | + |
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Preference number: 4 (lower is better) Translates to: KHGVSWTEFFQFFCQRCFVTGGG*TGASMA Trigger: TGCCATCGAGGCACCCGTTCACCCTCCCCCAGTGAC...GAAGCACCTTTGACAGAAGAACTGGAAGAACTCTGTCCAGGAAACTCCGTGCTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS-3UTR GCA 90 bp | ATTTATTTACACGTACAATATGCACAAAGACGCGGCCAACCCGATGTGAGCTGTCTGTCCTCTCCGAGGTaGCGGCTGCCACCTGGGCCC | + |
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Preference number: 4 (lower is better) Translates to: IYLHVQYAQRRGQPDVSCLSSPR*RLPPGP Trigger: GGGCCCAGGTGGCAGCCGGCACCTCGGAGAGGACAG...ACAGCTCACATCGGGTTGGCCGCGTCTTTGTGCATATTGTACGTGTAAATAAAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS-3UTR GCA 90 bp | GAGTTTCCTGGACAGAGTTCTTCCAGTTCTTCTGTCAAAGGTGCTTCAGGAAATAGGCCCCCGGGGAAGTaGTCCAGGAGTACGGCGTCC | + |
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Preference number: 4 (lower is better) Translates to: EFPGQSSSSSSVKGASGNRPPGK*SRSTAS Trigger: GGACGCCGTACTCCTGGAGCACTTCCCCGGGGGCCT...ATTTCCTGAAGCACCTTTGACAGAAGAACTGGAAGAACTCTGTCCAGGAAACTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS-3UTR GCA 90 bp | AAGCACGGAGTTTCCTGGACAGAGTTCTTCCAGTTCTTCTGTCAAAGGTGCTTCGGTAGCGTGGGGATGTaGGAACGCAGCCCCTCGAAG | + |
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Preference number: 4 (lower is better) Translates to: KHGVSWTEFFQFFCQRCFGSVGM*ERSPSK Trigger: CTTCGAGGGGCTGCGTTCGCACATCCCCACGCTACC...GAAGCACCTTTGACAGAAGAACTGGAAGAACTCTGTCCAGGAAACTCCGTGCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS-3UTR TCA 90 bp | GAGTTTCCTGGACAGAGTTCTTCCAGTTCTTCTGTCAAAGGTGCTTCAGGAAATCCTCGAAGGCGTCGTTaGTGGACTGCATGCGGCGCC | + |
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Preference number: 4 (lower is better) Translates to: EFPGQSSSSSSVKGASGNPRRRR*WTACGA Trigger: GGCGCCGCATGCAGTCCATCAACGACGCCTTCGAGG...ATTTCCTGAAGCACCTTTGACAGAAGAACTGGAAGAACTCTGTCCAGGAAACTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS-3UTR GCA 90 bp | GAGTTTCCTGGACAGAGTTCTTCCAGTTCTTCTGTCAAAGGTGCTTCAGGAAATAGCGGCAGGTCGGCTTaGACCAGCTCGCTGAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: EFPGQSSSSSSVKGASGNSGRSA*TSSLRK Trigger: CTTCCTCAGCGAGCTGGTGCAAGCCGACCTGCCGCT...ATTTCCTGAAGCACCTTTGACAGAAGAACTGGAAGAACTCTGTCCAGGAAACTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS-3UTR TCA 90 bp | AAGCACGGAGTTTCCTGGACAGAGTTCTTCCAGTTCTTCTGTCAAAGGTGCTTCCGTGTAGCTGGTGGCTaGGGAACTCTACTTCTGCTT | + |
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Preference number: 4 (lower is better) Translates to: KHGVSWTEFFQFFCQRCFRVAGG*GTLLLL Trigger: AAGCAGAAGTAGAGTTCCTCAGCCACCAGCTACACG...GAAGCACCTTTGACAGAAGAACTGGAAGAACTCTGTCCAGGAAACTCCGTGCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS-3UTR GCA 90 bp | AAGCACGGAGTTTCCTGGACAGAGTTCTTCCAGTTCTTCTGTCAAAGGTGCTTCGGAAAGAGAGTGCCCTaGAAGAGGAGGGAGACCATA | + |
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Preference number: 4 (lower is better) Translates to: KHGVSWTEFFQFFCQRCFGKRVP*KRRETI Trigger: TATGGTCTCCCTCCTCTTGCAGGGCACTCTCTTTCC...GAAGCACCTTTGACAGAAGAACTGGAAGAACTCTGTCCAGGAAACTCCGTGCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS-3UTR CCA 90 bp | AATAAGCACGGAGTTTCCTGGACAGAGTTCTTCCAGTTCTTCTGTCAAAGGTGCATCAAAGTAAGGGGATaGGAAGGTGTCCAGGCCCCC | + |
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Preference number: 4 (lower is better) Translates to: NKHGVSWTEFFQFFCQRCIKVRG*EGVQAP Trigger: GGGGGCCTGGACACCTTCCCATCCCCTTACTTTGAT...GCACCTTTGACAGAAGAACTGGAAGAACTCTGTCCAGGAAACTCCGTGCTTATT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS-3UTR CCA 90 bp | AATAAGCACGGAGTTTCCTGGACAGAGTTCTTCCAGTTCTTCTGTCAAAGGTGCGGGTCCCGAGAGGACTaGTCGGTGAAGAAATCTTCC | + |
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Preference number: 4 (lower is better) Translates to: NKHGVSWTEFFQFFCQRCGSRED*SVKKSS Trigger: GGAAGATTTCTTCACCGACCAGTCCTCTCGGGACCC...GCACCTTTGACAGAAGAACTGGAAGAACTCTGTCCAGGAAACTCCGTGCTTATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS-3UTR CCA 90 bp | GCACGGAGTTTCCTGGACAGAGTTCTTCCAGTTCTTCTGTCAAAGGTGCTTCAGTTTTCTGGGGTCCTCTaGGGTCCACACTTTAGCTGT | + |
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Preference number: 4 (lower is better) Translates to: ARSFLDRVLPVLLSKVLQFSGVL*GPHFSC Trigger: ACAGCTAAAGTGTGGACCCCAGAGGACCCCAGAAAA...CTGAAGCACCTTTGACAGAAGAACTGGAAGAACTCTGTCCAGGAAACTCCGTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS-3UTR TCA 90 bp | AAGCACGGAGTTTCCTGGACAGAGTTCTTCCAGTTCTTCTGTCAAAGGTGCTTCGAGAGGACTGGTCGGTaGAGAAATCTTCCTCATCAA | + |
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Preference number: 4 (lower is better) Translates to: KHGVSWTEFFQFFCQRCFERTGR*RNLPHQ Trigger: TTGATGAGGAAGATTTCTTCACCGACCAGTCCTCTC...GAAGCACCTTTGACAGAAGAACTGGAAGAACTCTGTCCAGGAAACTCCGTGCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS-3UTR CCA 90 bp | CTGGACAGAGTTCTTCCAGTTCTTCTGTCAAAGGTGCTTCAGGAAATCATATTATTTCGTAGGGTAGCGTaGGGATGTGCGAACGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: LDRVLPVLLSKVLQEIILFRRVA*GCANAA Trigger: GGCTGCGTTCGCACATCCCCACGCTACCCTACGAAA...TAATATGATTTCCTGAAGCACCTTTGACAGAAGAACTGGAAGAACTCTGTCCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS-3UTR CCA 90 bp | AAACCAATTCTGATATTAAATAAGCACGGAGTTTCCTGGACAGAGTTCTTCCAGCATAATCCGGGTCACTaGGGGAGGGTGAACGGGTGC | + |
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Preference number: 4 (lower is better) Translates to: KPILILNKHGVSWTEFFQHNPGH*GRVNGC Trigger: GCACCCGTTCACCCTCCCCCAGTGACCCGGATTATG...CTGGAAGAACTCTGTCCAGGAAACTCCGTGCTTATTTAATATCAGAATTGGTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS-3UTR GCA 90 bp | CTGGACAGAGTTCTTCCAGTTCTTCTGTCAAAGGTGCTTCAGGAAATCATATTAGTCCAGGAAAGAGAGTaGCCTGCAAGAGGAGGGAGA | + |
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Preference number: 4 (lower is better) Translates to: LDRVLPVLLSKVLQEIILVQERE*PARGGR Trigger: TCTCCCTCCTCTTGCAGGGCACTCTCTTTCCTGGAC...TAATATGATTTCCTGAAGCACCTTTGACAGAAGAACTGGAAGAACTCTGTCCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS-3UTR CCA 90 bp | AATAAGCACGGAGTTTCCTGGACAGAGTTCTTCCAGTTCTTCTGTCAAAGGTGCCAGTATTCGTGTAGCTaGTGGCTGAGGAACTCTACT | + |
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Preference number: 4 (lower is better) Translates to: NKHGVSWTEFFQFFCQRCQYSCS*WLRNST Trigger: AGTAGAGTTCCTCAGCCACCAGCTACACGAATACTG...GCACCTTTGACAGAAGAACTGGAAGAACTCTGTCCAGGAAACTCCGTGCTTATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS-3UTR CCA 90 bp | AATAAGCACGGAGTTTCCTGGACAGAGTTCTTCCAGTTCTTCTGTCAAAGGTGCTATTCGTGTAGCTGGTaGCTGAGGAACTCTACTTCT | + |
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Preference number: 4 (lower is better) Translates to: NKHGVSWTEFFQFFCQRCYSCSW*LRNSTS Trigger: AGAAGTAGAGTTCCTCAGCCACCAGCTACACGAATA...GCACCTTTGACAGAAGAACTGGAAGAACTCTGTCCAGGAAACTCCGTGCTTATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS-3UTR TCA 90 bp | GAGTTTCCTGGACAGAGTTCTTCCAGTTCTTCTGTCAAAGGTGCTTCAGGAAATCGAAAGATTTACTGTTaGGTTTTCTGGGGTCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: EFPGQSSSSSSVKGASGNRKIYC*VFWGPL Trigger: CAGAGGACCCCAGAAAACTCAACAGTAAATCTTTCG...ATTTCCTGAAGCACCTTTGACAGAAGAACTGGAAGAACTCTGTCCAGGAAACTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS-3UTR CCA 90 bp | AAACCAATTCTGATATTAAATAAGCACGGAGTTTCCTGGACAGAGTTCTTCCAGGCAGCGTGTCTACTTTaGAGAGGCGCTTTTCGTAGG | + |
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Preference number: 4 (lower is better) Translates to: KPILILNKHGVSWTEFFQAACLL*RGAFRR Trigger: CCTACGAAAAGCGCCTCTCCAAAGTAGACACGCTGC...CTGGAAGAACTCTGTCCAGGAAACTCCGTGCTTATTTAATATCAGAATTGGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS-3UTR CCA 90 bp | AGAAATAAACCAATTCTGATATTAAATAAGCACGGAGTTTCCTGGACAGAGTTCCACAAACTCAAAGGGTaGTTCGTTCTCTATGTTGTC | + |
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Preference number: 4 (lower is better) Translates to: RNKPILILNKHGVSWTEFHKLKG*FVLYVV Trigger: GACAACATAGAGAACGAACCACCCTTTGAGTTTGTG...GAACTCTGTCCAGGAAACTCCGTGCTTATTTAATATCAGAATTGGTTTATTTCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS GCA 90 bp | CTCCGCCTCGGAGCGCACGCGTCGCCGCCGCCTTGCTGCCGCCGCTaGCGCAGCCCCGTTCAAACCACCGAGCCGCGCACCGGGGGACAG | + |
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Preference number: 5 (lower is better) Translates to: LRLGAHASPPPCCRR*RSPVQTTEPRTGGQ Trigger: CTGTCCCCCGGTGCGCGGCTCGGTGGTTTGAACGGGGCTGCGGCAGCGGCGGCAGCAAGGCGGCGGCGACGCGTGCGCTCCGAGGCGGAG 78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS GCA 90 bp | CTGCTGCAGCTCCGCCTCGGAGCGCACGCGTCGCCGCCGCCTTGCTaGCGCCGCTGCCGCAGCCCCGTTCAAACCACCGAGCCGCGCACC | + |
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Preference number: 5 (lower is better) Translates to: LLQLRLGAHASPPPC*RRCRSPVQTTEPRT Trigger: GGTGCGCGGCTCGGTGGTTTGAACGGGGCTGCGGCAGCGGCGGCAGCAAGGCGGCGGCGACGCGTGCGCTCCGAGGCGGAGCTGCAGCAG 77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS GCA 90 bp | GTCCTCTCCGAGGTGCCGGCTGCCACCTGGGCCCCCGCAACCACCTaGGCCACTCCCGCGCAGCGGCAGGTCGGCTTGCACCAGCTCGCT | + |
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Preference number: 5 (lower is better) Translates to: VLSEVPAATWAPATT*ATPAQRQVGLHQLA Trigger: AGCGAGCTGGTGCAAGCCGACCTGCCGCTGCGCGGGAGTGGCGCAGGTGGTTGCGGGGGCCCAGGTGGCAGCCGGCACCTCGGAGAGGAC 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS GCA 90 bp | CCTTCTGGGCCTGGTTACCGGGACTGTCCTCTCCGAGGTGCCGGCTaGCACCTGGGCCCCCGCAACCACCTGCGCCACTCCCGCGCAGCG | + |
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Preference number: 5 (lower is better) Translates to: PSGPGYRDCPLRGAG*HLGPRNHLRHSRAA Trigger: CGCTGCGCGGGAGTGGCGCAGGTGGTTGCGGGGGCCCAGGTGGCAGCCGGCACCTCGGAGAGGACAGTCCCGGTAACCAGGCCCAGAAGG 73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS GCA 90 bp | GACTGCATGCGGCGCCGCTCTCGCACATTAGCGGCTTGTCGCAGCTaGTGCAGCTCCGCCTCGGAGCGCACGCGTCGCCGCCGCCTTGCT | + |
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Preference number: 5 (lower is better) Translates to: DCMRRRSRTLAACRS*CSSASERTRRRRLA Trigger: AGCAAGGCGGCGGCGACGCGTGCGCTCCGAGGCGGAGCTGCAGCAGCTGCGACAAGCCGCTAATGTGCGAGAGCGGCGCCGCATGCAGTC 71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS GCA 90 bp | ATGATAACCTTCTGGGCCTGGTTACCGGGACTGTCCTCTCCGAGGTaGCGGCTGCCACCTGGGCCCCCGCAACCACCTGCGCCACTCCCG | + |
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Preference number: 5 (lower is better) Translates to: MITFWAWLPGLSSPR*RLPPGPPQPPAPLP Trigger: CGGGAGTGGCGCAGGTGGTTGCGGGGGCCCAGGTGGCAGCCGGCACCTCGGAGAGGACAGTCCCGGTAACCAGGCCCAGAAGGTTATCAT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS GCA 90 bp | GTGGGGATGTGCGAACGCAGCCCCTCGAAGGCGTCGTTGATGGACTaGATGCGGCGCCGCTCTCGCACATTAGCGGCTTGTCGCAGCTGC | + |
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Preference number: 5 (lower is better) Translates to: VGMCERSPSKASLMD*MRRRSRTLAACRSC Trigger: GCAGCTGCGACAAGCCGCTAATGTGCGAGAGCGGCGCCGCATGCAGTCCATCAACGACGCCTTCGAGGGGCTGCGTTCGCACATCCCCAC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS CCA 90 bp | GAGGGTGAACGGGTGCCTCGATGGCAGATGATAACCTTCTGGGCCTaGTTACCGGGACTGTCCTCTCCGAGGTGCCGGCTGCCACCTGGG | + |
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Preference number: 5 (lower is better) Translates to: EGERVPRWQMITFWA*LPGLSSPRCRLPPG Trigger: CCCAGGTGGCAGCCGGCACCTCGGAGAGGACAGTCCCGGTAACCAGGCCCAGAAGGTTATCATCTGCCATCGAGGCACCCGTTCACCCTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS CCA 90 bp | CTGGGGGAGGGTGAACGGGTGCCTCGATGGCAGATGATAACCTTCTaGGCCTGGTTACCGGGACTGTCCTCTCCGAGGTGCCGGCTGCCA | + |
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Preference number: 5 (lower is better) Translates to: LGEGERVPRWQMITF*AWLPGLSSPRCRLP Trigger: TGGCAGCCGGCACCTCGGAGAGGACAGTCCCGGTAACCAGGCCCAGAAGGTTATCATCTGCCATCGAGGCACCCGTTCACCCTCCCCCAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS TCA 90 bp | GCAGGCACGCCCCGTCGCGGTAGCAGTATTCGTGTAGCTGGTGGCTaGGGAACTCTACTTCTGCTTGCTCGTCCCCCAGCAGCTCGTCGC | + |
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Preference number: 5 (lower is better) Translates to: AGTPRRGSSIRVAGG*GTLLLLARPPAARR Trigger: GCGACGAGCTGCTGGGGGACGAGCAAGCAGAAGTAGAGTTCCTCAGCCACCAGCTACACGAATACTGCTACCGCGACGGGGCGTGCCTGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS TCA 90 bp | GCAGCTCGTCGCTGTCCTCCAGCGGGTCCCGAGAGGACTGGTCGGTaGAGAAATCTTCCTCATCAAAGTAAGGGGATGGGAAGGTGTCCA | + |
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Preference number: 5 (lower is better) Translates to: AARRCPPAGPERTGR*RNLPHQSKGMGRCP Trigger: TGGACACCTTCCCATCCCCTTACTTTGATGAGGAAGATTTCTTCACCGACCAGTCCTCTCGGGACCCGCTGGAGGACAGCGACGAGCTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS-3UTR CAA 90 bp | ATTTATTTACACGTACAATATGCACAAAGACGCGGCCAACCCGATGTGAGCTGTCCCTCGAAGGCGTCGTaGATGGACTGCATGCGGCGC | + |
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Preference number: 5 (lower is better) Translates to: IYLHVQYAQRRGQPDVSCPSKAS*MDCMRR Trigger: GCGCCGCATGCAGTCCATCAACGACGCCTTCGAGGG...ACAGCTCACATCGGGTTGGCCGCGTCTTTGTGCATATTGTACGTGTAAATAAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS-3UTR CAA 90 bp | GAGTTTCCTGGACAGAGTTCTTCCAGTTCTTCTGTCAAAGGTGCTTCAGGAAATCAGCGGCAGGTCGGCTaGCACCAGCTCGCTGAGGAA | + |
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Preference number: 5 (lower is better) Translates to: EFPGQSSSSSSVKGASGNQRQVG*HQLAEE Trigger: TTCCTCAGCGAGCTGGTGCAAGCCGACCTGCCGCTG...ATTTCCTGAAGCACCTTTGACAGAAGAACTGGAAGAACTCTGTCCAGGAAACTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS-3UTR CAA 90 bp | TTCTTCCAGTTCTTCTGTCAAAGGTGCTTCAGGAAATCATATTATAGAACATCATCGAAAGATTTACTGTaGAGTTTTCTGGGGTCCTCT | + |
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Preference number: 5 (lower is better) Translates to: FFQFFCQRCFRKSYYRTSSKDLL*SFLGSS Trigger: AGAGGACCCCAGAAAACTCAACAGTAAATCTTTCGA...TGATGTTCTATAATATGATTTCCTGAAGCACCTTTGACAGAAGAACTGGAAGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS GCA 72 bp | GGAGCGCACGCGTCGCCGCCGCCTTGCTGCCGCCGCTaGCGCAGCCCCGTTCAAACCACCGAGCCGCGCACC | + |
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Preference number: 6 (lower is better) Translates to: GAHASPPPCCRR*RSPVQTTEPRT Trigger: GGTGCGCGGCTCGGTGGTTTGAACGGGGCTGCGGCAGCGGCGGCAGCAAGGCGGCGGCGACGCGTGCGCTCC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS GCA 72 bp | GAGGTGCCGGCTGCCACCTGGGCCCCCGCAACCACCTaGGCCACTCCCGCGCAGCGGCAGGTCGGCTTGCAC | + |
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Preference number: 6 (lower is better) Translates to: EVPAATWAPATT*ATPAQRQVGLH Trigger: GTGCAAGCCGACCTGCCGCTGCGCGGGAGTGGCGCAGGTGGTTGCGGGGGCCCAGGTGGCAGCCGGCACCTC 76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS GCA 72 bp | CGGCGCCGCTCTCGCACATTAGCGGCTTGTCGCAGCTaGTGCAGCTCCGCCTCGGAGCGCACGCGTCGCCGC | + |
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Preference number: 6 (lower is better) Translates to: RRRSRTLAACRS*CSSASERTRRR Trigger: GCGGCGACGCGTGCGCTCCGAGGCGGAGCTGCAGCAGCTGCGACAAGCCGCTAATGTGCGAGAGCGGCGCCG 74% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS TCA 72 bp | CACCGCGGCACACGGGTAGGCGAGGCACGAGGGCGGTaGGCCAGGCGAGTAGGGGAAGGCAGCGAGAGGAGC | + |
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Preference number: 6 (lower is better) Translates to: HRGTRVGEARGR*ARRVGEGSERS Trigger: GCTCCTCTCGCTGCCTTCCCCTACTCGCCTGGCTCACCGCCCTCGTGCCTCGCCTACCCGTGTGCCGCGGTG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS GCA 72 bp | TTCTGGGCCTGGTTACCGGGACTGTCCTCTCCGAGGTaGCGGCTGCCACCTGGGCCCCCGCAACCACCTGCG | + |
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Preference number: 6 (lower is better) Translates to: FWAWLPGLSSPR*RLPPGPPQPPA Trigger: CGCAGGTGGTTGCGGGGGCCCAGGTGGCAGCCGGCACCTCGGAGAGGACAGTCCCGGTAACCAGGCCCAGAA 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS CAA 90 bp | GTCGTTGATGGACTGCATGCGGCGCCGCTCTCGCACATTAGCGGCTaGTCGCAGCTGCTGCAGCTCCGCCTCGGAGCGCACGCGTCGCCG | + |
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Preference number: 6 (lower is better) Translates to: VVDGLHAAPLSHISG*SQLLQLRLGAHASP Trigger: CGGCGACGCGTGCGCTCCGAGGCGGAGCTGCAGCAGCTGCGACAAGCCGCTAATGTGCGAGAGCGGCGCCGCATGCAGTCCATCAACGAC 69% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS CAA 90 bp | GCCCCCGCAACCACCTGCGCCACTCCCGCGCAGCGGCAGGTCGGCTaGCACCAGCTCGCTGAGGAAGTTAATGTAGCCTATGGCCAAGCG | + |
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Preference number: 6 (lower is better) Translates to: APATTCATPAQRQVG*HQLAEEVNVAYGQA Trigger: CGCTTGGCCATAGGCTACATTAACTTCCTCAGCGAGCTGGTGCAAGCCGACCTGCCGCTGCGCGGGAGTGGCGCAGGTGGTTGCGGGGGC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS GCA 72 bp | GCCAGGCGAGTAGGGGAAGGCAGCGAGAGGAGCCCCTaGATCGCAGCAATAGCTGACGTTGTCCTCGGGCTC | + |
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Preference number: 6 (lower is better) Translates to: ARRVGEGSERSP*IAAIADVVLGL Trigger: GAGCCCGAGGACAACGTCAGCTATTGCTGCGATGCAGGGGCTCCTCTCGCTGCCTTCCCCTACTCGCCTGGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS GCA 72 bp | TGCGAACGCAGCCCCTCGAAGGCGTCGTTGATGGACTaGATGCGGCGCCGCTCTCGCACATTAGCGGCTTGT | + |
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Preference number: 6 (lower is better) Translates to: CERSPSKASLMD*MRRRSRTLAAC Trigger: ACAAGCCGCTAATGTGCGAGAGCGGCGCCGCATGCAGTCCATCAACGACGCCTTCGAGGGGCTGCGTTCGCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS CCA 72 bp | CGGGTGCCTCGATGGCAGATGATAACCTTCTGGGCCTaGTTACCGGGACTGTCCTCTCCGAGGTGCCGGCTG | + |
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Preference number: 6 (lower is better) Translates to: RVPRWQMITFWA*LPGLSSPRCRL Trigger: CAGCCGGCACCTCGGAGAGGACAGTCCCGGTAACCAGGCCCAGAAGGTTATCATCTGCCATCGAGGCACCCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS CAA 72 bp | GTGGGGATGTGCGAACGCAGCCCCTCGAAGGCGTCGTaGATGGACTGCATGCGGCGCCGCTCTCGCACATTA | + |
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Preference number: 6 (lower is better) Translates to: VGMCERSPSKAS*MDCMRRRSRTL Trigger: TAATGTGCGAGAGCGGCGCCGCATGCAGTCCATCAACGACGCCTTCGAGGGGCTGCGTTCGCACATCCCCAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS CCA 72 bp | TCCGGGTCACTGGGGGAGGGTGAACGGGTGCCTCGATaGCAGATGATAACCTTCTGGGCCTGGTTACCGGGA | + |
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Preference number: 6 (lower is better) Translates to: SGSLGEGERVPR*QMITFWAWLPG Trigger: TCCCGGTAACCAGGCCCAGAAGGTTATCATCTGCCATCGAGGCACCCGTTCACCCTCCCCCAGTGACCCGGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS GCA 72 bp | TCGTGTAGCTGGTGGCTGAGGAACTCTACTTCTGCTTaGTCGTCCCCCAGCAGCTCGTCGCTGTCCTCCAGC | + |
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Preference number: 6 (lower is better) Translates to: SCSWWLRNSTSA*SSPSSSSLSSS Trigger: GCTGGAGGACAGCGACGAGCTGCTGGGGGACGAGCAAGCAGAAGTAGAGTTCCTCAGCCACCAGCTACACGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS CCA 72 bp | GGTGAACGGGTGCCTCGATGGCAGATGATAACCTTCTaGGCCTGGTTACCGGGACTGTCCTCTCCGAGGTGC | + |
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Preference number: 6 (lower is better) Translates to: GERVPRWQMITF*AWLPGLSSPRC Trigger: GCACCTCGGAGAGGACAGTCCCGGTAACCAGGCCCAGAAGGTTATCATCTGCCATCGAGGCACCCGTTCACC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS TCA 72 bp | CCCCGTCGCGGTAGCAGTATTCGTGTAGCTGGTGGCTaGGGAACTCTACTTCTGCTTGCTCGTCCCCCAGCA | + |
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Preference number: 6 (lower is better) Translates to: PRRGSSIRVAGG*GTLLLLARPPA Trigger: TGCTGGGGGACGAGCAAGCAGAAGTAGAGTTCCTCAGCCACCAGCTACACGAATACTGCTACCGCGACGGGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS CCA 72 bp | TGTCTACTTTGGAGAGGCGCTTTTCGTAGGGTAGCGTaGGGATGTGCGAACGCAGCCCCTCGAAGGCGTCGT | + |
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Preference number: 6 (lower is better) Translates to: CLLWRGAFRRVA*GCANAAPRRRR Trigger: ACGACGCCTTCGAGGGGCTGCGTTCGCACATCCCCACGCTACCCTACGAAAAGCGCCTCTCCAAAGTAGACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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| CDS CAA 72 bp | CAGGACACAAACTCAAAGGGTGGTTCGTTCTCTATGTaGTCGAAAGATTTACTGTTGAGTTTTCTGGGGTCC | + |
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Preference number: 6 (lower is better) Translates to: QDTNSKGGSFSM*SKDLLLSFLGS Trigger: GGACCCCAGAAAACTCAACAGTAAATCTTTCGACAACATAGAGAACGAACCACCCTTTGAGTTTGTGTCCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028068.3 |
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