Pregenerated sensors for PTCRA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036858Ensembl transcript IDs: ENSMUST00000041012.9
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTCTGGGCCCAGCTGGCTTCCTCACAGCCTGGGCTTTGTTCTTCCTaGCCCCAGGGAGCAGTAGTGTCCAGCATCACCACCACCCTGGGC | + |
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Preference number: 1 (lower is better) Translates to: FWAQLASSQPGLCSS*PQGAVVSSITTTLG Trigger: GCCCAGGGTGGTGGTGATGCTGGACACTACTGCTCCCTGGGGCCAGGAAGAACAAAGCCCAGGCTGTGAGGAAGCCAGCTGGGCCCAGAA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| 3UTR GCA 90 bp | TCTCACCAGCCCGACATGCCTGTGTTTTATAAGACTTTTGTATTGTaGCCAGTTACCAGGTGCATCCTCCTGCCCTGTCTGACAGAGACA | + |
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Preference number: 1 (lower is better) Translates to: SHQPDMPVFYKTFVL*PVTRCILLPCLTET Trigger: TGTCTCTGTCAGACAGGGCAGGAGGATGCACCTGGTAACTGGGCACAATACAAAAGTCTTATAAAACACAGGCATGTCGGGCTGGTGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| 3UTR-3UTR CCA 90 bp | CCCAGTTACCAGGTGCATCCTCCTGCCCTGTCTGACAGAGACACAGTCCTTTTCAGTTCTGGGCCCAGCTaGCTTCCTCACAGCCTGGGC | + |
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Preference number: 2 (lower is better) Translates to: PSYQVHPPALSDRDTVLFSSGPS*LPHSLG Trigger: GCCCAGGCTGTGAGGAAGCCAGCTGGGCCCAGAACT...GAAAAGGACTGTGTCTCTGTCAGACAGGGCAGGAGGATGCACCTGGTAACTGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| 3UTR CAA 90 bp | CCGTCTCACCAGCCCGACATGCCTGTGTTTTATAAGACTTTTGTATaGTGCCCAGTTACCAGGTGCATCCTCCTGCCCTGTCTGACAGAG | + |
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Preference number: 2 (lower is better) Translates to: PSHQPDMPVFYKTFV*CPVTRCILLPCLTE Trigger: CTCTGTCAGACAGGGCAGGAGGATGCACCTGGTAACTGGGCACAATACAAAAGTCTTATAAAACACAGGCATGTCGGGCTGGTGAGACGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| 3UTR-3UTR GCA 90 bp | ACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGTAGTCAGTGCTTGCCCAGTTACCAGGTaGATCCTCCTGCCCTGTCTG | + |
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Preference number: 2 (lower is better) Translates to: TMWLLGFELRTFGRVVSACPVTR*ILLPCL Trigger: CAGACAGGGCAGGAGGATGCACCTGGTAACTGGGCA...AGCACTGACTACTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| 3UTR-3UTR CCA 90 bp | ACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGTAGTCAGTGCTGGGCTTTGTTCTTCCTaGCCCCAGGGAGCAGTAGTG | + |
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Preference number: 2 (lower is better) Translates to: TMWLLGFELRTFGRVVSAGLCSS*PQGAVV Trigger: CACTACTGCTCCCTGGGGCCAGGAAGAACAAAGCCC...AGCACTGACTACTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| 3UTR CAA 90 bp | GAGGGCATCAGATCTTGTTACGGATGGTTGTCAGCCACCATGTGGTaGCTGGGATTTGAACTCAGGACCTTTGGAAGAGTAGTCAGTGCT | + |
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Preference number: 2 (lower is better) Translates to: EGIRSCYGWLSATMW*LGFELRTFGRVVSA Trigger: AGCACTGACTACTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTGACAACCATCCGTAACAAGATCTGATGCCCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| 3UTR-3UTR TCA 90 bp | ACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGTAGTCAGTGCTTCCTCCTGCCCTGTCTaGCAGAGACACAGTCCTTTT | + |
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Preference number: 2 (lower is better) Translates to: TMWLLGFELRTFGRVVSASSCPV*QRHSPF Trigger: AAAAGGACTGTGTCTCTGTCAGACAGGGCAGGAGGA...AGCACTGACTACTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| 3UTR-3UTR CCA 90 bp | TGTTTTATAAGACTTTTGTATTGTGCCCAGTTACCAGGTGCATCCTCCTGCCCTGGCTTCCTCACAGCCTaGGCTTTGTTCTTCCTGGCC | + |
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Preference number: 2 (lower is better) Translates to: CFIRLLYCAQLPGASSCPGFLTA*ALFFLA Trigger: GGCCAGGAAGAACAAAGCCCAGGCTGTGAGGAAGCC...AGGGCAGGAGGATGCACCTGGTAACTGGGCACAATACAAAAGTCTTATAAAACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| 3UTR-3UTR TCA 90 bp | ACTATATGTAAGTACAATGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGAAGAAACCCCCACTTTaGACAAGGAGCACTGAGGGG | + |
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Preference number: 2 (lower is better) Translates to: TICKYNVAVFRHTRRGHQKKPPL*TRSTEG Trigger: CCCCTCAGTGCTCCTTGTTCAAAGTGGGGGTTTCTT...CTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACATTGTACTTACATATAGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| 3UTR-3UTR GCA 90 bp | TTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGTAGTCAGTGCTCTTAACCACAAGACTTTTGTATTGTaGCCAGTTACCAGGTGCATC | + |
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Preference number: 2 (lower is better) Translates to: LLGFELRTFGRVVSALNHKTFVL*PVTRCI Trigger: GATGCACCTGGTAACTGGGCACAATACAAAAGTCTT...GTGGTTAAGAGCACTGACTACTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| 3UTR CCA 72 bp | CAGCTGGCTTCCTCACAGCCTGGGCTTTGTTCTTCCTaGCCCCAGGGAGCAGTAGTGTCCAGCATCACCACC | + |
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Preference number: 3 (lower is better) Translates to: QLASSQPGLCSS*PQGAVVSSITT Trigger: GGTGGTGATGCTGGACACTACTGCTCCCTGGGGCCAGGAAGAACAAAGCCCAGGCTGTGAGGAAGCCAGCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| 3UTR-3UTR CAA 90 bp | CCAGTTACCAGGTGCATCCTCCTGCCCTGTCTGACAGAGACACAGTCCTTTTCTCTCACAGCCTGGGCTTaGTTCTTCCTGGCCCCAGGG | + |
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Preference number: 3 (lower is better) Translates to: PVTRCILLPCLTETQSFSLTAWA*FFLAPG Trigger: CCCTGGGGCCAGGAAGAACAAAGCCCAGGCTGTGAG...AGAAAAGGACTGTGTCTCTGTCAGACAGGGCAGGAGGATGCACCTGGTAACTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| 3UTR TCA 72 bp | TGTGCCCAGTTACCAGGTGCATCCTCCTGCCCTGTCTaGCAGAGACACAGTCCTTTTCTTCCCAAAGTCTCA | + |
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Preference number: 3 (lower is better) Translates to: CAQLPGASSCPV*QRHSPFLPKVS Trigger: TGAGACTTTGGGAAGAAAAGGACTGTGTCTCTGTCAGACAGGGCAGGAGGATGCACCTGGTAACTGGGCACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| 3UTR GCA 72 bp | CCCGACATGCCTGTGTTTTATAAGACTTTTGTATTGTaGCCAGTTACCAGGTGCATCCTCCTGCCCTGTCTG | + |
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Preference number: 3 (lower is better) Translates to: PDMPVFYKTFVL*PVTRCILLPCL Trigger: CAGACAGGGCAGGAGGATGCACCTGGTAACTGGGCACAATACAAAAGTCTTATAAAACACAGGCATGTCGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| 3UTR CCA 72 bp | GACACACCAGAAGAGGGCATCAGATCTTGTTACGGATaGTTGTCAGCCACCATGTGGTTGCTGGGATTTGAA | + |
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Preference number: 3 (lower is better) Translates to: DTPEEGIRSCYG*LSATMWLLGFE Trigger: TTCAAATCCCAGCAACCACATGGTGGCTGACAACCATCCGTAACAAGATCTGATGCCCTCTTCTGGTGTGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| 3UTR-3UTR CAA 90 bp | GATGGTTGTCAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAATATAAGACTTTTGTATaGTGCCCAGTTACCAGGTGC | + |
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Preference number: 3 (lower is better) Translates to: DGCQPPCGCWDLNSGPLEYKTFV*CPVTRC Trigger: GCACCTGGTAACTGGGCACAATACAAAAGTCTTATA...TTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTGACAACCATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| 3UTR GCA 72 bp | TTTTATAAGACTTTTGTATTGTGCCCAGTTACCAGGTaGATCCTCCTGCCCTGTCTGACAGAGACACAGTCC | + |
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Preference number: 3 (lower is better) Translates to: FYKTFVLCPVTR*ILLPCLTETQS Trigger: GGACTGTGTCTCTGTCAGACAGGGCAGGAGGATGCACCTGGTAACTGGGCACAATACAAAAGTCTTATAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| 3UTR CCA 72 bp | ATCAGATCTTGTTACGGATGGTTGTCAGCCACCATGTaGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGA | + |
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Preference number: 3 (lower is better) Translates to: IRSCYGWLSATM*LLGFELRTFGR Trigger: TCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTGACAACCATCCGTAACAAGATCTGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS-3UTR GCA 90 bp | CCCCAGGGAGCAGTAGTGTCCAGCATCACCACCACCCTGGGCTCAGAGGGGTGGGGAGGCGGAGGTGGCTaGAGGTCAGGAGCACATCGA | + |
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Preference number: 4 (lower is better) Translates to: PQGAVVSSITTTLGSEGWGGGGG*RSGAHR Trigger: TCGATGTGCTCCTGACCTGCAGCCACCTCCGCCTCC...CCACCCCTCTGAGCCCAGGGTGGTGGTGATGCTGGACACTACTGCTCCCTGGGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS-3UTR CCA 90 bp | GGGCCCAGCTGGCTTCCTCACAGCCTGGGCTTTGTTCTTCCTGGCCCCAGGGAGGATTCCCCTGACAGCTaGAGGGGGTGTGTGCTCCGG | + |
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Preference number: 4 (lower is better) Translates to: GPSWLPHSLGFVLPGPREDSPDS*RGCVLR Trigger: CCGGAGCACACACCCCCTCCAGCTGTCAGGGGAATC...CTCCCTGGGGCCAGGAAGAACAAAGCCCAGGCTGTGAGGAAGCCAGCTGGGCCC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS-3UTR CCA 90 bp | GGAGCAGTAGTGTCCAGCATCACCACCACCCTGGGCTCAGAGGGGTGGGTAAGATGGCCCGCCAGCACATaGAGGCGGAGGTGGCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: GAVVSSITTTLGSEGWVRWPAST*RRRWLQ Trigger: CTGCAGCCACCTCCGCCTCCATGTGCTGGCGGGCCA...TCTTACCCACCCCTCTGAGCCCAGGGTGGTGGTGATGCTGGACACTACTGCTCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS-3UTR GCA 90 bp | GGAGCAGTAGTGTCCAGCATCACCACCACCCTGGGCTCAGAGGGGTGGGTAAGAGCTGGAGGGGGTGTGTaGTCCGGTTCTGTCCCCCAG | + |
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Preference number: 4 (lower is better) Translates to: GAVVSSITTTLGSEGWVRAGGGV*SGSVPQ Trigger: CTGGGGGACAGAACCGGAGCACACACCCCCTCCAGC...TCTTACCCACCCCTCTGAGCCCAGGGTGGTGGTGATGCTGGACACTACTGCTCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS-3UTR TCA 90 bp | CCCCAGGGAGCAGTAGTGTCCAGCATCACCACCACCCTGGGCTCAGAGGGGTGGACTGCCATTGCCAGCTaGGAACCAGACAGGGTTGTC | + |
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Preference number: 4 (lower is better) Translates to: PQGAVVSSITTTLGSEGWTAIAS*EPDRVV Trigger: GACAACCCTGTCTGGTTCTCAGCTGGCAATGGCAGT...CCACCCCTCTGAGCCCAGGGTGGTGGTGATGCTGGACACTACTGCTCCCTGGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS-3UTR CCA 90 bp | CCCAGTTACCAGGTGCATCCTCCTGCCCTGTCTGACAGAGACACAGTCCTTTTCCGTGAGGGTGGTGGCTaGAGGTGCTGGCCCGCCAGC | + |
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Preference number: 4 (lower is better) Translates to: PSYQVHPPALSDRDTVLFREGGG*RCWPAS Trigger: GCTGGCGGGCCAGCACCTCCAGCCACCACCCTCACG...GAAAAGGACTGTGTCTCTGTCAGACAGGGCAGGAGGATGCACCTGGTAACTGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| 3UTR CAA 72 bp | GTTCTGGGCCCAGCTGGCTTCCTCACAGCCTGGGCTTaGTTCTTCCTGGCCCCAGGGAGCAGTAGTGTCCAG | + |
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Preference number: 4 (lower is better) Translates to: VLGPAGFLTAWA*FFLAPGSSSVQ Trigger: CTGGACACTACTGCTCCCTGGGGCCAGGAAGAACAAAGCCCAGGCTGTGAGGAAGCCAGCTGGGCCCAGAAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS-3UTR CCA 90 bp | CCAGTTACCAGGTGCATCCTCCTGCCCTGTCTGACAGAGACACAGTCCTTTTCTCCCCAGCCCCAGGCCTaGTGTGACAGACCAAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: PVTRCILLPCLTETQSFSPQPQA*CDRPRA Trigger: AGCCCTTGGTCTGTCACACCAGGCCTGGGGCTGGGG...AGAAAAGGACTGTGTCTCTGTCAGACAGGGCAGGAGGATGCACCTGGTAACTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS-3UTR TCA 90 bp | ACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGTAGTCAGTGCTGCCCCAGGCCTGGTGTaGCAGACCAAGGGCTCCCAG | + |
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Preference number: 4 (lower is better) Translates to: TMWLLGFELRTFGRVVSAAPGLV*QTKGSQ Trigger: CTGGGAGCCCTTGGTCTGTCACACCAGGCCTGGGGC...AGCACTGACTACTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS-3UTR TCA 90 bp | CCAGTTACCAGGTGCATCCTCCTGCCCTGTCTGACAGAGACACAGTCCTTTTCTCATCTACCAGCAGTGTaGTGGGTGGAGCCAGAGACG | + |
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Preference number: 4 (lower is better) Translates to: PVTRCILLPCLTETQSFSHLPAV*WVEPET Trigger: CGTCTCTGGCTCCACCCATCACACTGCTGGTAGATG...AGAAAAGGACTGTGTCTCTGTCAGACAGGGCAGGAGGATGCACCTGGTAACTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS-3UTR GCA 90 bp | CCCAGTTACCAGGTGCATCCTCCTGCCCTGTCTGACAGAGACACAGTCCTTTTCCTAGGGCACTGCCATTaGCAGCTGAGAACCAGACAG | + |
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Preference number: 4 (lower is better) Translates to: PSYQVHPPALSDRDTVLFLGHCH*QLRTRQ Trigger: CTGTCTGGTTCTCAGCTGGCAATGGCAGTGCCCTAG...GAAAAGGACTGTGTCTCTGTCAGACAGGGCAGGAGGATGCACCTGGTAACTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS-3UTR CCA 90 bp | TTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGTAGTCAGTGCTCTTAACCACGGTGGCTGGAGGTGCTaGCCCGCCAGCACATGGAGG | + |
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Preference number: 4 (lower is better) Translates to: LLGFELRTFGRVVSALNHGGWRC*PASTWR Trigger: CCTCCATGTGCTGGCGGGCCAGCACCTCCAGCCACC...GTGGTTAAGAGCACTGACTACTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS-3UTR GCA 90 bp | CTGTCTGACAGAGACACAGTCCTTTTCTTCCCAAAGTCTCAGTCTGATAGGAGAAGGGGGTGCCAGCGATaGCTGATGGTAGAGCCTGAC | + |
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Preference number: 4 (lower is better) Translates to: LSDRDTVLFFPKSQSDRRRGCQR*LMVEPD Trigger: GTCAGGCTCTACCATCAGGCATCGCTGGCACCCCCT...TCTCCTATCAGACTGAGACTTTGGGAAGAAAAGGACTGTGTCTCTGTCAGACAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS-3UTR GCA 90 bp | ACTATATGTAAGTACAATGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGGTCAAGGCCAGGGGGTaGCGCATCGAGGACCAGGCA | + |
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Preference number: 4 (lower is better) Translates to: TICKYNVAVFRHTRRGHQVKARG*RIEDQA Trigger: TGCCTGGTCCTCGATGCGGCACCCCCTGGCCTTGAC...CTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACATTGTACTTACATATAGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS-3UTR GCA 90 bp | ACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGTAGTCAGTGCTAGGCGTCTAGGGCACTaGCATTGCCAGCTGAGAACC | + |
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Preference number: 4 (lower is better) Translates to: TMWLLGFELRTFGRVVSARRLGH*HCQLRT Trigger: GGTTCTCAGCTGGCAATGGCAGTGCCCTAGACGCCT...AGCACTGACTACTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS-3UTR CCA 90 bp | CTGTCTGACAGAGACACAGTCCTTTTCTTCCCAAAGTCTCAGTCTGATAGGAGACAGCAGTGTGATGGGTaGAGCCAGAGACGGAAAGGG | + |
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Preference number: 4 (lower is better) Translates to: LSDRDTVLFFPKSQSDRRQQCDG*SQRRKG Trigger: CCCTTTCCGTCTCTGGCTCCACCCATCACACTGCTG...TCTCCTATCAGACTGAGACTTTGGGAAGAAAAGGACTGTGTCTCTGTCAGACAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS-3UTR TCA 90 bp | TTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGTAGTCAGTGCTCTTAACCACCGAGCAGAAGCAGTTTaGAGAGGAGCAGGCGCAGTA | + |
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Preference number: 4 (lower is better) Translates to: LLGFELRTFGRVVSALNHRAEAV*RGAGAV Trigger: TACTGCGCCTGCTCCTCTTCAAACTGCTTCTGCTCG...GTGGTTAAGAGCACTGACTACTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS-3UTR CCA 90 bp | ACTATATGTAAGTACAATGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGGAAGGCAAGGAGAGCTaGGCCAGGCTAGTCCAGGTG | + |
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Preference number: 4 (lower is better) Translates to: TICKYNVAVFRHTRRGHQEGKES*ARLVQV Trigger: CACCTGGACTAGCCTGGCCCAGCTCTCCTTGCCTTC...CTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACATTGTACTTACATATAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS-3UTR CCA 90 bp | ACTATATGTAAGTACAATGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGACATGGAGGCGGAGGTaGCTGCAGGTCAGGAGCACA | + |
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Preference number: 4 (lower is better) Translates to: TICKYNVAVFRHTRRGHQTWRRR*LQVRST Trigger: TGTGCTCCTGACCTGCAGCCACCTCCGCCTCCATGT...CTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACATTGTACTTACATATAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| 3UTR CAA 72 bp | CAGCCCGACATGCCTGTGTTTTATAAGACTTTTGTATaGTGCCCAGTTACCAGGTGCATCCTCCTGCCCTGT | + |
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Preference number: 4 (lower is better) Translates to: QPDMPVFYKTFV*CPVTRCILLPC Trigger: ACAGGGCAGGAGGATGCACCTGGTAACTGGGCACAATACAAAAGTCTTATAAAACACAGGCATGTCGGGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| 3UTR CAA 72 bp | CTCACCAGCCCGACATGCCTGTGTTTTATAAGACTTTaGTATTGTGCCCAGTTACCAGGTGCATCCTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: LTSPTCLCFIRL*YCAQLPGASSC Trigger: GCAGGAGGATGCACCTGGTAACTGGGCACAATACAAAAGTCTTATAAAACACAGGCATGTCGGGCTGGTGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS-3UTR GCA 90 bp | TGTTTTATAAGACTTTTGTATTGTGCCCAGTTACCAGGTGCATCCTCCTGCCCTACCACCAGCATGTGCTaGCTTCCATCTACCAGCAGT | + |
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Preference number: 4 (lower is better) Translates to: CFIRLLYCAQLPGASSCPTTSMC*LPSTSS Trigger: ACTGCTGGTAGATGGAAGGCAGCACATGCTGGTGGT...AGGGCAGGAGGATGCACCTGGTAACTGGGCACAATACAAAAGTCTTATAAAACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS-3UTR CAA 90 bp | CCCCAGGGAGCAGTAGTGTCCAGCATCACCACCACCCTGGGCTCAGAGGGGTGGGAGAACCAGACAGGGTaGTCAAGGCCAGGGGGTGCC | + |
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Preference number: 5 (lower is better) Translates to: PQGAVVSSITTTLGSEGWENQTG*SRPGGA Trigger: GGCACCCCCTGGCCTTGACAACCCTGTCTGGTTCTC...CCACCCCTCTGAGCCCAGGGTGGTGGTGATGCTGGACACTACTGCTCCCTGGGG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS TCA 90 bp | GCCAGAGACGGAAAGGGGGTGCCAGCGATGCCTGATGGTAGAGCCTaGCACCTGACGCCCAGAAGCAGCAGCAGCCATGTCCTAGCCATG | + |
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Preference number: 5 (lower is better) Translates to: ARDGKGVPAMPDGRA*HLTPRSSSSHVLAM Trigger: CATGGCTAGGACATGGCTGCTGCTGCTTCTGGGCGTCAGGTGTCAGGCTCTACCATCAGGCATCGCTGGCACCCCCTTTCCGTCTCTGGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS TCA 90 bp | GGCGGAGGTGGCTGCAGGTCAGGAGCACATCGAGCAGAAGCAGTTTaGAGAGGAGCAGGCGCAGTAGGCTCAGCCACAGTACCTGCCGCT | + |
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Preference number: 5 (lower is better) Translates to: GGGGCRSGAHRAEAV*RGAGAVGSATVPAA Trigger: AGCGGCAGGTACTGTGGCTGAGCCTACTGCGCCTGCTCCTCTTCAAACTGCTTCTGCTCGATGTGCTCCTGACCTGCAGCCACCTCCGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS TCA 90 bp | CCAGGCAAACCACCAGCATGTGCTGCCTTCCATCTACCAGCAGTGTaGTGGGTGGAGCCAGAGACGGAAAGGGGGTGCCAGCGATGCCTG | + |
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Preference number: 5 (lower is better) Translates to: PGKPPACAAFHLPAV*WVEPETERGCQRCL Trigger: CAGGCATCGCTGGCACCCCCTTTCCGTCTCTGGCTCCACCCATCACACTGCTGGTAGATGGAAGGCAGCACATGCTGGTGGTTTGCCTGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS-3UTR CAA 90 bp | CTGTCTGACAGAGACACAGTCCTTTTCTTCCCAAAGTCTCAGTCTGATAGGAGAGTGGGAGGCAGGGACTaGCGTGAGGGTGGTGGCTGG | + |
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Preference number: 5 (lower is better) Translates to: LSDRDTVLFFPKSQSDRRVGGRD*REGGGW Trigger: CCAGCCACCACCCTCACGCAAGTCCCTGCCTCCCAC...TCTCCTATCAGACTGAGACTTTGGGAAGAAAAGGACTGTGTCTCTGTCAGACAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS-3UTR CAA 90 bp | ACTATATGTAAGTACAATGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGTCTAGGGCACTGCCATaGCCAGCTGAGAACCAGACA | + |
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Preference number: 5 (lower is better) Translates to: TICKYNVAVFRHTRRGHQSRALP*PAENQT Trigger: TGTCTGGTTCTCAGCTGGCAATGGCAGTGCCCTAGA...CTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACATTGTACTTACATATAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS-3UTR CAA 90 bp | ACTATATGTAAGTACAATGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGTCGAGCAGAAGCAGTTaGAAGAGGAGCAGGCGCAGT | + |
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Preference number: 5 (lower is better) Translates to: TICKYNVAVFRHTRRGHQSSRSS*KRSRRS Trigger: ACTGCGCCTGCTCCTCTTCAAACTGCTTCTGCTCGA...CTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACATTGTACTTACATATAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS GCA 72 bp | GGAGGCAGGGACTTGCGTGAGGGTGGTGGCTGGAGGTaGTGGCCCGCCAGCACATGGAGGCGGAGGTGGCTG | + |
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Preference number: 6 (lower is better) Translates to: GGRDLREGGGWR*WPASTWRRRWL Trigger: CAGCCACCTCCGCCTCCATGTGCTGGCGGGCCAGCACCTCCAGCCACCACCCTCACGCAAGTCCCTGCCTCC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS CCA 72 bp | GGCAGGGACTTGCGTGAGGGTGGTGGCTGGAGGTGCTaGCCCGCCAGCACATGGAGGCGGAGGTGGCTGCAG | + |
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Preference number: 6 (lower is better) Translates to: GRDLREGGGWRC*PASTWRRRWLQ Trigger: CTGCAGCCACCTCCGCCTCCATGTGCTGGCGGGCCAGCACCTCCAGCCACCACCCTCACGCAAGTCCCTGCC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS CCA 72 bp | GAGGGTGGTGGCTGGAGGTGCTGGCCCGCCAGCACATaGAGGCGGAGGTGGCTGCAGGTCAGGAGCACATCG | + |
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Preference number: 6 (lower is better) Translates to: EGGGWRCWPAST*RRRWLQVRSTS Trigger: CGATGTGCTCCTGACCTGCAGCCACCTCCGCCTCCATGTGCTGGCGGGCCAGCACCTCCAGCCACCACCCTC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS CCA 72 bp | TGGAGGTGCTGGCCCGCCAGCACATGGAGGCGGAGGTaGCTGCAGGTCAGGAGCACATCGAGCAGAAGCAGT | + |
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Preference number: 6 (lower is better) Translates to: WRCWPASTWRRR*LQVRSTSSRSS Trigger: ACTGCTTCTGCTCGATGTGCTCCTGACCTGCAGCCACCTCCGCCTCCATGTGCTGGCGGGCCAGCACCTCCA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS CCA 72 bp | TCCCAGGCTTCCAGCTCTTCAGAAGGCAAGGAGAGCTaGGCCAGGCTAGTCCAGGTGCCGTCCGGTGCCAGA | + |
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Preference number: 6 (lower is better) Translates to: SQASSSSEGKES*ARLVQVPSGAR Trigger: TCTGGCACCGGACGGCACCTGGACTAGCCTGGCCCAGCTCTCCTTGCCTTCTGAAGAGCTGGAAGCCTGGGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS CAA 72 bp | AGGGCACTGCCATTGCCAGCTGAGAACCAGACAGGGTaGTCAAGGCCAGGGGGTGCCGCATCGAGGACCAGG | + |
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Preference number: 6 (lower is better) Translates to: RALPLPAENQTG*SRPGGAASRTR Trigger: CCTGGTCCTCGATGCGGCACCCCCTGGCCTTGACAACCCTGTCTGGTTCTCAGCTGGCAATGGCAGTGCCCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS CAA 90 bp | AAGGCGTCTAGGGCACTGCCATTGCCAGCTGAGAACCAGACAGGGTaGTCAAGGCCAGGGGGTGCCGCATCGAGGACCAGGCAAACCACC | + |
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Preference number: 6 (lower is better) Translates to: KASRALPLPAENQTG*SRPGGAASRTRQTT Trigger: GGTGGTTTGCCTGGTCCTCGATGCGGCACCCCCTGGCCTTGACAACCCTGTCTGGTTCTCAGCTGGCAATGGCAGTGCCCTAGACGCCTT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS TCA 72 bp | GGAAAGGGGGTGCCAGCGATGCCTGATGGTAGAGCCTaGCACCTGACGCCCAGAAGCAGCAGCAGCCATGTC | + |
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Preference number: 6 (lower is better) Translates to: GKGVPAMPDGRA*HLTPRSSSSHV Trigger: GACATGGCTGCTGCTGCTTCTGGGCGTCAGGTGTCAGGCTCTACCATCAGGCATCGCTGGCACCCCCTTTCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS TCA 72 bp | CTCCGGAAAGCAGCTCCTGGCTGTCGAAGATTCCCCTaGCAGCTGGAGGGGGTGTGTGCTCCGGTTCTGTCC | + |
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Preference number: 6 (lower is better) Translates to: LRKAAPGCRRFP*QLEGVCAPVLS Trigger: GGACAGAACCGGAGCACACACCCCCTCCAGCTGTCAGGGGAATCTTCGACAGCCAGGAGCTGCTTTCCGGAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS TCA 72 bp | CCACCAGCATGTGCTGCCTTCCATCTACCAGCAGTGTaGTGGGTGGAGCCAGAGACGGAAAGGGGGTGCCAG | + |
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Preference number: 6 (lower is better) Translates to: PPACAAFHLPAV*WVEPETERGCQ Trigger: CTGGCACCCCCTTTCCGTCTCTGGCTCCACCCATCACACTGCTGGTAGATGGAAGGCAGCACATGCTGGTGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS GCA 72 bp | GCCGCATCGAGGACCAGGCAAACCACCAGCATGTGCTaGCTTCCATCTACCAGCAGTGTGATGGGTGGAGCC | + |
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Preference number: 6 (lower is better) Translates to: AASRTRQTTSMC*LPSTSSVMGGA Trigger: GGCTCCACCCATCACACTGCTGGTAGATGGAAGGCAGCACATGCTGGTGGTTTGCCTGGTCCTCGATGCGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS GCA 72 bp | GGTGCCGCATCGAGGACCAGGCAAACCACCAGCATGTaGTGCCTTCCATCTACCAGCAGTGTGATGGGTGGA | + |
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Preference number: 6 (lower is better) Translates to: GAASRTRQTTSM*CLPSTSSVMGG Trigger: TCCACCCATCACACTGCTGGTAGATGGAAGGCAGCACATGCTGGTGGTTTGCCTGGTCCTCGATGCGGCACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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| CDS CAA 72 bp | TGGCTGCAGGTCAGGAGCACATCGAGCAGAAGCAGTTaGAAGAGGAGCAGGCGCAGTAGGCTCAGCCACAGT | + |
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Preference number: 6 (lower is better) Translates to: WLQVRSTSSRSS*KRSRRSRLSHS Trigger: ACTGTGGCTGAGCCTACTGCGCCTGCTCCTCTTCAAACTGCTTCTGCTCGATGTGCTCCTGACCTGCAGCCA 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041012.9 |
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