Pregenerated sensors for PTCHD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041552Ensembl transcript IDs: ENSMUST00000038665.6, ENSMUST00000170236.2
Found 146 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CGTGAGAGTGATCCAGACGTTGATCAGCGAATCTGCTACCAGGAATaGCGAGAAGAAGAGCAGGAACAAAGCACTGATGCAGGAATTGTG | + |
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Preference number: 1 (lower is better) Translates to: RESDPDVDQRICYQE*REEEQEQSTDAGIV Trigger: CACAATTCCTGCATCAGTGCTTTGTTCCTGCTCTTCTTCTCGGCATTCCTGGTAGCAGATTCGCTGATCAACGTCTGGATCACTCTCACG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
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| 3UTR GCA 90 bp | CACAGACACAACCGTGAGAGTGATCCAGACGTTGATCAGCGAATCTaGTACCAGGAATGCCGAGAAGAAGAGCAGGAACAAAGCACTGAT | + |
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Preference number: 1 (lower is better) Translates to: HRHNRESDPDVDQRI*YQECREEEQEQSTD Trigger: ATCAGTGCTTTGTTCCTGCTCTTCTTCTCGGCATTCCTGGTAGCAGATTCGCTGATCAACGTCTGGATCACTCTCACGGTTGTGTCTGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
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| 3UTR TCA 90 bp | GAGGGTGGCAGGAAAGTAAGTATCACAGGTAAAATGGCAAAGCAGTaGAAGAAGGTGACAAATGCTATTAAAAACAAGCACCTGAACAGT | + |
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Preference number: 1 (lower is better) Translates to: EGGRKVSITGKMAKQ*KKVTNAIKNKHLNS Trigger: ACTGTTCAGGTGCTTGTTTTTAATAGCATTTGTCACCTTCTTTCACTGCTTTGCCATTTTACCTGTGATACTTACTTTCCTGCCACCCTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
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| 3UTR-3UTR TCA 90 bp | TCCACAGACACAACCGTGAGAGTGATCCAGACGTTGATCAGCGAATCTGCTACCCACCTTGGAGGTGACTaGAAGCCTCCTCAGAGTCTC | + |
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Preference number: 2 (lower is better) Translates to: STDTTVRVIQTLISESATHLGGD*KPPQSL Trigger: GAGACTCTGAGGAGGCTTTCAGTCACCTCCAAGGTG...GGTAGCAGATTCGCTGATCAACGTCTGGATCACTCTCACGGTTGTGTCTGTGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
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| 3UTR CAA 90 bp | ATCACTCCAAACTCCACAGACACAACCGTGAGAGTGATCCAGACGTaGATCAGCGAATCTGCTACCAGGAATGCCGAGAAGAAGAGCAGG | + |
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Preference number: 2 (lower is better) Translates to: ITPNSTDTTVRVIQT*ISESATRNAEKKSR Trigger: CCTGCTCTTCTTCTCGGCATTCCTGGTAGCAGATTCGCTGATCAACGTCTGGATCACTCTCACGGTTGTGTCTGTGGAGTTTGGAGTGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
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| 3UTR-3UTR TCA 90 bp | ACCAGGAATGCCGAGAAGAAGAGCAGGAACAAAGCACTGATGCAGGAATTGTGCGGTCTGACCCTTCACTaGCCTGCAGATAGCCCATTA | + |
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Preference number: 2 (lower is better) Translates to: TRNAEKKSRNKALMQELCGLTLH*PADSPL Trigger: TAATGGGCTATCTGCAGGTCAGTGAAGGGTCAGACC...GCACAATTCCTGCATCAGTGCTTTGTTCCTGCTCTTCTTCTCGGCATTCCTGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
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| 3UTR-3UTR TCA 90 bp | ACCACTCGAGTACTATCAATATCTACCATTTCTACACACTCAATTTCCTCCCGGACTTCACCTTGGAGGTaGCTGAAAGCCTCCTCAGAG | + |
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Preference number: 2 (lower is better) Translates to: TTRVLSISTISTHSISSRTSPWR*LKASSE Trigger: CTCTGAGGAGGCTTTCAGTCACCTCCAAGGTGAAGT...CCGGGAGGAAATTGAGTGTGTAGAAATGGTAGATATTGATAGTACTCGAGTGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
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| 3UTR-3UTR GCA 90 bp | CGAATCTGCTACCAGGAATGCCGAGAAGAAGAGCAGGAACAAAGCACTGATGCAGGTTTGTGTTGCAGTTaGTACGATGTTACTAAGGTC | + |
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Preference number: 2 (lower is better) Translates to: RICYQECREEEQEQSTDAGLCCS*YDVTKV Trigger: GACCTTAGTAACATCGTAGCAACTGCAACACAAACC...TGCATCAGTGCTTTGTTCCTGCTCTTCTTCTCGGCATTCCTGGTAGCAGATTCG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
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| 3UTR-3UTR TCA 90 bp | CGAATCTGCTACCAGGAATGCCGAGAAGAAGAGCAGGAACAAAGCACTGATGCACACAGTAATAGCGTTTaGGGAAACATACCAATAAGT | + |
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Preference number: 2 (lower is better) Translates to: RICYQECREEEQEQSTDAHSNSV*GNIPIS Trigger: ACTTATTGGTATGTTTCCTCAAACGCTATTACTGTG...TGCATCAGTGCTTTGTTCCTGCTCTTCTTCTCGGCATTCCTGGTAGCAGATTCG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
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| 3UTR-3UTR CCA 90 bp | TCCACAGACACAACCGTGAGAGTGATCCAGACGTTGATCAGCGAATCTGCTACCTCTAGAACATCTTCTTaGACACTAGAGTTCCAATAT | + |
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Preference number: 2 (lower is better) Translates to: STDTTVRVIQTLISESATSRTSS*TLEFQY Trigger: ATATTGGAACTCTAGTGTCCAAGAAGATGTTCTAGA...GGTAGCAGATTCGCTGATCAACGTCTGGATCACTCTCACGGTTGTGTCTGTGGA 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
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| 3UTR-3UTR GCA 90 bp | TACTTTTGGTGGGCAGTAGTGTACTCAATGGTTTGTGTTGCAGTTGCTACGATGACTCTCATAAGTGTTTaGTTCCTCACCTTCAGCTGT | + |
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Preference number: 2 (lower is better) Translates to: YFWWAVVYSMVCVAVATMTLISV*FLTFSC Trigger: ACAGCTGAAGGTGAGGAAGCAAACACTTATGAGAGT...CATCGTAGCAACTGCAACACAAACCATTGAGTACACTACTGCCCACCAAAAGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
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| 3UTR-3UTR TCA 90 bp | TTGAAGGCACAGCTGCAAGAGGAAATAGACCAACAATATAACAGAGGTAACTCTGGACTACAAAAGGCTTaGCATAGGTGTTGGTTATCC | + |
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Preference number: 2 (lower is better) Translates to: LKAQLQEEIDQQYNRGNSGLQKA*HRCWLS Trigger: GGATAACCAACACCTATGTCAAGCCTTTTGTAGTCC...AGAGTTACCTCTGTTATATTGTTGGTCTATTTCCTCTTGCAGCTGTGCCTTCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
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| 3UTR CAA 90 bp | ATATATGTAAAACCCAATAACAGGACTGTAGTTGTTAAAGTACTTTaGGTGGGCAGTAGTGTACTCAATGGTTTGTGTTGCAGTTGCTAC | + |
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Preference number: 2 (lower is better) Translates to: IYVKPNNRTVVVKVL*VGSSVLNGLCCSCY Trigger: GTAGCAACTGCAACACAAACCATTGAGTACACTACTGCCCACCAAAAGTACTTTAACAACTACAGTCCTGTTATTGGGTTTTACATATAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
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| 3UTR-3UTR GCA 90 bp | TACTCTAGAACATCTTCTTGGACACTAGAGTTCCAATATTCTATGGACTCATATCTCAATGGTTTGTGTTaGAGTTGCTACGATGTTACT | + |
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Preference number: 2 (lower is better) Translates to: YSRTSSWTLEFQYSMDSYLNGLC*SCYDVT Trigger: AGTAACATCGTAGCAACTGCAACACAAACCATTGAG...ATATGAGTCCATAGAATATTGGAACTCTAGTGTCCAAGAAGATGTTCTAGAGTA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
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| 3UTR-3UTR CCA 90 bp | TACTCTAGAACATCTTCTTGGACACTAGAGTTCCAATATTCTATGGACTCATATTTAAAGTACTTTTGGTaGGCAGTAGTGTACTCAATG | + |
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Preference number: 2 (lower is better) Translates to: YSRTSSWTLEFQYSMDSYLKYFW*AVVYSM Trigger: CATTGAGTACACTACTGCCCACCAAAAGTACTTTAA...ATATGAGTCCATAGAATATTGGAACTCTAGTGTCCAAGAAGATGTTCTAGAGTA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
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| 3UTR GCA 72 bp | AACCGTGAGAGTGATCCAGACGTTGATCAGCGAATCTaGTACCAGGAATGCCGAGAAGAAGAGCAGGAACAA | + |
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Preference number: 3 (lower is better) Translates to: NRESDPDVDQRI*YQECREEEQEQ Trigger: TTGTTCCTGCTCTTCTTCTCGGCATTCCTGGTAGCAGATTCGCTGATCAACGTCTGGATCACTCTCACGGTT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
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| 3UTR-3UTR CAA 90 bp | ACCACTCGAGTACTATCAATATCTACCATTTCTACACACTCAATTTCCTCCCGGGACTCTCATAAGTGTTaGCTTCCTCACCTTCAGCTG | + |
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Preference number: 3 (lower is better) Translates to: TTRVLSISTISTHSISSRDSHKC*LPHLQL Trigger: CAGCTGAAGGTGAGGAAGCAAACACTTATGAGAGTC...CCGGGAGGAAATTGAGTGTGTAGAAATGGTAGATATTGATAGTACTCGAGTGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
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| 3UTR TCA 72 bp | CGGATTAAAGACAATGAACTTCACCTTGGAGGTGACTaGAAGCCTCCTCAGAGTCTCCAAGAGATCATAAAG | + |
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Preference number: 3 (lower is better) Translates to: RIKDNELHLGGD*KPPQSLQEIIK Trigger: CTTTATGATCTCTTGGAGACTCTGAGGAGGCTTTCAGTCACCTCCAAGGTGAAGTTCATTGTCTTTAATCCG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
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| 3UTR-3UTR CAA 90 bp | TTGAAGGCACAGCTGCAAGAGGAAATAGACCAACAATATAACAGAGGTAACTCTACAATGAACTTCACCTaGGAGGTGACTGAAAGCCTC | + |
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Preference number: 3 (lower is better) Translates to: LKAQLQEEIDQQYNRGNSTMNFT*EVTESL Trigger: GAGGCTTTCAGTCACCTCCAAGGTGAAGTTCATTGT...AGAGTTACCTCTGTTATATTGTTGGTCTATTTCCTCTTGCAGCTGTGCCTTCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
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| 3UTR-3UTR CAA 90 bp | ACCACTCGAGTACTATCAATATCTACCATTTCTACACACTCAATTTCCTCCCGGGTTGTTAAAGTACTTTaGGTGGGCAGTAGTGTACTC | + |
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Preference number: 3 (lower is better) Translates to: TTRVLSISTISTHSISSRVVKVL*VGSSVL Trigger: GAGTACACTACTGCCCACCAAAAGTACTTTAACAAC...CCGGGAGGAAATTGAGTGTGTAGAAATGGTAGATATTGATAGTACTCGAGTGGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
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| 3UTR TCA 72 bp | CATAGGTGTTGGTTATCCAGTCACAGTAATAGCGTTTaGGGAAACATACCAATAAGTGACTCTCATAAGTGT | + |
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Preference number: 3 (lower is better) Translates to: HRCWLSSHSNSV*GNIPISDSHKC Trigger: ACACTTATGAGAGTCACTTATTGGTATGTTTCCTCAAACGCTATTACTGTGACTGGATAACCAACACCTATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
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| 3UTR CCA 72 bp | CGCACAAAACCCTTAGTGTACTCTAGAACATCTTCTTaGACACTAGAGTTCCAATATTCTATGGACTCATAT | + |
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Preference number: 3 (lower is better) Translates to: RTKPLVYSRTSS*TLEFQYSMDSY Trigger: ATATGAGTCCATAGAATATTGGAACTCTAGTGTCCAAGAAGATGTTCTAGAGTACACTAAGGGTTTTGTGCG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
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| 3UTR-3UTR CAA 90 bp | TACTCTAGAACATCTTCTTGGACACTAGAGTTCCAATATTCTATGGACTCATATACTCAATGGTTTGTGTaGCAGTTGCTACGATGTTAC | + |
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Preference number: 3 (lower is better) Translates to: YSRTSSWTLEFQYSMDSYTQWFV*QLLRCY Trigger: GTAACATCGTAGCAACTGCAACACAAACCATTGAGT...ATATGAGTCCATAGAATATTGGAACTCTAGTGTCCAAGAAGATGTTCTAGAGTA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
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| 3UTR-3UTR CAA 90 bp | TACTCTAGAACATCTTCTTGGACACTAGAGTTCCAATATTCTATGGACTCATATAGTGTACTCAATGGTTaGTGTTGCAGTTGCTACGAT | + |
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Preference number: 3 (lower is better) Translates to: YSRTSSWTLEFQYSMDSYSVLNG*CCSCYD Trigger: ATCGTAGCAACTGCAACACAAACCATTGAGTACACT...ATATGAGTCCATAGAATATTGGAACTCTAGTGTCCAAGAAGATGTTCTAGAGTA 38% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
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| 3UTR CAA 72 bp | AACTCCACAGACACAACCGTGAGAGTGATCCAGACGTaGATCAGCGAATCTGCTACCAGGAATGCCGAGAAG | + |
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Preference number: 4 (lower is better) Translates to: NSTDTTVRVIQT*ISESATRNAEK Trigger: CTTCTCGGCATTCCTGGTAGCAGATTCGCTGATCAACGTCTGGATCACTCTCACGGTTGTGTCTGTGGAGTT 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
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| CDS-3UTR TCA 90 bp | TACTTTTGGTGGGCAGTAGTGTACTCAATGGTTTGTGTTGCAGTTGCTACGATGCTGCCTCAATGTTTGTaGAAGGGCTGGCCCCGATGC | + |
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Preference number: 4 (lower is better) Translates to: YFWWAVVYSMVCVAVATMLPQCL*KGWPRC Trigger: GCATCGGGGCCAGCCCTTTCACAAACATTGAGGCAG...CATCGTAGCAACTGCAACACAAACCATTGAGTACACTACTGCCCACCAAAAGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
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| CDS-3UTR GCA 90 bp | ACCAGGAATGCCGAGAAGAAGAGCAGGAACAAAGCACTGATGCAGGAATTGTGCGGAGAGCATGGAGTCTaGATAGACTTCTGCAGTTCG | + |
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Preference number: 4 (lower is better) Translates to: TRNAEKKSRNKALMQELCGEHGV*IDFCSS Trigger: CGAACTGCAGAAGTCTATGCAGACTCCATGCTCTCC...GCACAATTCCTGCATCAGTGCTTTGTTCCTGCTCTTCTTCTCGGCATTCCTGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
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| CDS-3UTR TCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTCGACCTGGTAGCGGCTaGAGCTGGCGCCGAGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTRPGSG*SWRRAG Trigger: TCCTGCTCGGCGCCAGCTTCAGCCGCTACCAGGTCG...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
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| CDS-3UTR TCA 90 bp | TTGAAGGCACAGCTGCAAGAGGAAATAGACCAACAATATAACAGAGGTAACTCTCCCCGATGCCGAAGGTaGCCAAGTACATGGCAGTGG | + |
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Preference number: 4 (lower is better) Translates to: LKAQLQEEIDQQYNRGNSPRCRR*PSTWQW Trigger: CCACTGCCATGTACTTGGTCACCTTCGGCATCGGGG...AGAGTTACCTCTGTTATATTGTTGGTCTATTTCCTCTTGCAGCTGTGCCTTCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
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| CDS-3UTR CCA 90 bp | AAACTCCACAGACACAACCGTGAGAGTGATCCAGACGTTGATCAGCGAATCTGCGAGAGAAGGAGAGCATaGAGTCTGCATAGACTTCTG | + |
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Preference number: 4 (lower is better) Translates to: KLHRHNRESDPDVDQRICERRRA*SLHRLL Trigger: CAGAAGTCTATGCAGACTCCATGCTCTCCTTCTCTC...GCAGATTCGCTGATCAACGTCTGGATCACTCTCACGGTTGTGTCTGTGGAGTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
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| CDS-3UTR GCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTTGGGGCGCCAGCAGGTaGTCCACGCTCTCTTCGACC | + |
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Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTWGASR*STLSST Trigger: GGTCGAAGAGAGCGTGGAGCACCTGCTGGCGCCCCA...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
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| CDS-3UTR CCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTTTGGCTAGGCTGTGCTaGGGCGCCAGCAGGTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTLARLC*GASRCS Trigger: GGAGCACCTGCTGGCGCCCCAGCACAGCCTAGCCAA...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
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| CDS-3UTR TCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTCCGGGTGACTGGCAATaGAGTGGCCAAGCCGGGAGA | + |
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Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTPGDWQ*SGQAGR Trigger: TCTCCCGGCTTGGCCACTTCATTGCCAGTCACCCGG...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
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| CDS-3UTR TCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTCGAGCAGGATGGAGATaGGCACCGGCGCCGAAGCAA | + |
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Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTRAGWR*APAPKQ Trigger: TTGCTTCGGCGCCGGTGCTCATCTCCATCCTGCTCG...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
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| CDS-3UTR TCA 90 bp | CGAATCTGCTACCAGGAATGCCGAGAAGAAGAGCAGGAACAAAGCACTGATGCAGTACATAGAGGTAGTTaGAGAGGATTGCAATACAGG | + |
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Preference number: 4 (lower is better) Translates to: RICYQECREEEQEQSTDAVHRGS*RGLQYR Trigger: CCTGTATTGCAATCCTCTTCAACTACCTCTATGTAC...TGCATCAGTGCTTTGTTCCTGCTCTTCTTCTCGGCATTCCTGGTAGCAGATTCG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
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| CDS-3UTR GCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTATCTTGGCTAGGCTGTaGTGGGGCGCCAGCAGGTGC | + |
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Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTILARL*WGASRC Trigger: GCACCTGCTGGCGCCCCAGCACAGCCTAGCCAAGAT...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
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| CDS-3UTR TCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTCCTTGCTGTGCACAGTaGCACCTCCGAGTTGGTGCC | + |
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Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTPCCAQ*HLRVGA Trigger: GGCACCAACTCGGAGGTGTCACTGTGCACAGCAAGG...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
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| CDS-3UTR TCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTCCCCGATGCCGAAGGTaGCCAAGTACATGGCAGTGG | + |
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Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTPRCRR*PSTWQW Trigger: CCACTGCCATGTACTTGGTCACCTTCGGCATCGGGG...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
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| CDS-3UTR TCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTCTGCCTCAATGTTTGTaGAAGGGCTGGCCCCGATGC | + |
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Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTLPQCL*KGWPRC Trigger: GCATCGGGGCCAGCCCTTTCACAAACATTGAGGCAG...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
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| CDS-3UTR GCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTGGCCTAACCAGGGTTTaGTGCGGACACAGTCCTGCA | + |
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Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTGLTRV*CGHSPA Trigger: TGCAGGACTGTGTCCGCAGCAAACCCTGGTTAGGCC...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
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| 3UTR CAA 72 bp | TACACAAAAGACGGATTAAAGACAATGAACTTCACCTaGGAGGTGACTGAAAGCCTCCTCAGAGTCTCCAAG | + |
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Preference number: 4 (lower is better) Translates to: YTKDGLKTMNFT*EVTESLLRVSK Trigger: CTTGGAGACTCTGAGGAGGCTTTCAGTCACCTCCAAGGTGAAGTTCATTGTCTTTAATCCGTCTTTTGTGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
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| CDS-3UTR TCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTGCAAAGAAGACCGGGTaGCTGGCAATGAAGTGGCCA | + |
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Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTAKKTG*LAMKWP Trigger: TGGCCACTTCATTGCCAGTCACCCGGTCTTCTTTGC...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
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| CDS-3UTR TCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTCACCTTGGAGGTGACTaGAAGCCTCCTCAGAGTCTC | + |
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Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTHLGGD*KPPQSL Trigger: GAGACTCTGAGGAGGCTTTCAGTCACCTCCAAGGTG...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
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| CDS-3UTR GCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTACCCGATCCTTGCTGTaGACAGTGACACCTCCGAGT | + |
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Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTTRSLL*TVTPPS Trigger: ACTCGGAGGTGTCACTGTGCACAGCAAGGATCGGGT...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
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| CDS-3UTR GCA 90 bp | ACCACTCGAGTACTATCAATATCTACCATTTCTACACACTCAATTTCCTCCCGGGCAGAAAATCCTGGCTaGCTCAATGTTTGTGAAAGG | + |
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Preference number: 4 (lower is better) Translates to: TTRVLSISTISTHSISSRAENPG*LNVCER Trigger: CCTTTCACAAACATTGAGGCAGCCAGGATTTTCTGC...CCGGGAGGAAATTGAGTGTGTAGAAATGGTAGATATTGATAGTACTCGAGTGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
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| CDS-3UTR CCA 90 bp | TACTTTTGGTGGGCAGTAGTGTACTCAATGGTTTGTGTTGCAGTTGCTACGATGCGCTCTTTAACATGTTaGTCCTCTCTAGTTTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: YFWWAVVYSMVCVAVATMRSLTC*SSLVFL Trigger: GAGGAAAACTAGAGAGGACCAACATGTTAAAGAGCG...CATCGTAGCAACTGCAACACAAACCATTGAGTACACTACTGCCCACCAAAAGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
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| CDS-3UTR TCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTGACCAGGTAACGTTCTaGTACACGGCTGGTCTTCTG | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTDQVTF*YTAGLL Trigger: CAGAAGACCAGCCGTGTATCAGAACGTTACCTGGTC...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR TCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTCCAGGATCAGGCTGGTaGCCAGGTAACGTTCTGATA | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTPGSGW*PGNVLI Trigger: TATCAGAACGTTACCTGGTCACCAGCCTGATCCTGG...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR TCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTATCCATGACCTAGCATaGCGAAAGGGACTCCCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTIHDLA*RKGLPG Trigger: TCCTGGGAGTCCCTTTCGTCATGCTAGGTCATGGAT...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR TCA 90 bp | TACTTTTGGTGGGCAGTAGTGTACTCAATGGTTTGTGTTGCAGTTGCTACGATGGCTGGAACCATAAAATaGGAGTACATAGAGGTAGTT | + |
|
Preference number: 4 (lower is better) Translates to: YFWWAVVYSMVCVAVATMAGTIK*EYIEVV Trigger: AACTACCTCTATGTACTCTCATTTTATGGTTCCAGC...CATCGTAGCAACTGCAACACAAACCATTGAGTACACTACTGCCCACCAAAAGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
||
| CDS-3UTR TCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTGGTCTGACCCTTCACTaGCCTGCAGATAGCCCATTA | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTGLTLH*PADSPL Trigger: TAATGGGCTATCTGCAGGTCAGTGAAGGGTCAGACC...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR TCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTACTTCACCTTGGAGGTaGCTGAAAGCCTCCTCAGAG | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTTSPWR*LKASSE Trigger: CTCTGAGGAGGCTTTCAGTCACCTCCAAGGTGAAGT...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR TCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTGCAGGAACAAAGCACTaGTGCAGGAATTGTGCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTAGTKH*CRNCAG Trigger: CCCTGCACAATTCCTGCATCAGTGCTTTGTTCCTGC...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR GCA 90 bp | AAAAGGCTTGACATAGGTGTTGGTTATCCAGTCACAGTAATAGCGTTTGAGGAATTGCAATACAGGAGTTaGAGCAGAAAATCCTGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: KRLDIGVGYPVTVIAFEELQYRS*SRKSWL Trigger: CAGCCAGGATTTTCTGCTGCAACTCCTGTATTGCAA...TTCCTCAAACGCTATTACTGTGACTGGATAACCAACACCTATGTCAAGCCTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
||
| CDS-3UTR CCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTCCAGGCCTTGGAACCTaGATCTTGGTCACTGCAGTA | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTPGLGT*ILVTAV Trigger: TACTGCAGTGACCAAGATCCAGGTTCCAAGGCCTGG...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR CCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTCAGTGTCACAGAAGCTaGACTCCCACCTCTCAGCTA | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTQCHRS*TPTSQL Trigger: TAGCTGAGAGGTGGGAGTCCAGCTTCTGTGACACTG...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR TCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTTGTACAGGTCAGATTTaGAGGCACAGCTGCAAGAGG | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTCTGQI*RHSCKR Trigger: CCTCTTGCAGCTGTGCCTTCAAATCTGACCTGTACA...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR GCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTGGAGAGCATGGAGTCTaGATAGACTTCTGCAGTTCG | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTGEHGV*IDFCSS Trigger: CGAACTGCAGAAGTCTATGCAGACTCCATGCTCTCC...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR GCA 90 bp | TTGAAGGCACAGCTGCAAGAGGAAATAGACCAACAATATAACAGAGGTAACTCTGTAGTTGAAGAGGATTaGAATACAGGAGTTGCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: LKAQLQEEIDQQYNRGNSVVEED*NTGVAA Trigger: TGCTGCAACTCCTGTATTGCAATCCTCTTCAACTAC...AGAGTTACCTCTGTTATATTGTTGGTCTATTTCCTCTTGCAGCTGTGCCTTCAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
||
| CDS-3UTR CCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTGTTAAAGCCAGGCCTTaGAACCTGGATCTTGGTCAC | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTVKARP*NLDLGH Trigger: GTGACCAAGATCCAGGTTCCAAGGCCTGGCTTTAAC...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR CCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTGGACTCCCAGGAAGGTaGAGTTGTATTTTCCACCAG | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTGLPGR*SCIFHQ Trigger: CTGGTGGAAAATACAACTCCACCTTCCTGGGAGTCC...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR TCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTAAGATCAGGTCCGTGTaGTGTTGGTCTAGCATGTTG | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTKIRSV*CWSSML Trigger: CAACATGCTAGACCAACATCACACGGACCTGATCTT...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR GCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTAAGCTGAATGGCCTCTaGAGATTTCACCCGATCCTT | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTKLNGL*RFHPIL Trigger: AAGGATCGGGTGAAATCTGCAGAGGCCATTCAGCTT...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR GCA 90 bp | ACTCGAGTACTATCAATATCTACCATTTCTACACACTCAATTTCCTCCCGGTTTGTCTGCATAGACTTCTaGAGTTCGCTCTTTAACATG | + |
|
Preference number: 4 (lower is better) Translates to: TRVLSISTISTHSISSRFVCIDF*SSLFNM Trigger: CATGTTAAAGAGCGAACTGCAGAAGTCTATGCAGAC...AAACCGGGAGGAAATTGAGTGTGTAGAAATGGTAGATATTGATAGTACTCGAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
||
| CDS-3UTR GCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTATCTGCTACCAGGAATaGCGAGAAGAAGAGCAGGAA | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTICYQE*REEEQE Trigger: TTCCTGCTCTTCTTCTCGGCATTCCTGGTAGCAGAT...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR GCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTGTTGATCAGCGAATCTaGTACCAGGAATGCCGAGAA | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTVDQRI*YQECRE Trigger: TTCTCGGCATTCCTGGTAGCAGATTCGCTGATCAAC...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR CCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTAATTGGTCCGATTGGTaGCCCGAGCATTCTTTAGCT | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTNWSDW*PEHSLA Trigger: AGCTAAAGAATGCTCGGGCCACCAATCGGACCAATT...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR CCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTACACGGCTGGTCTTCTaGAAATCTTCCCTCAGTGAT | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTTRLVF*KSSLSD Trigger: ATCACTGAGGGAAGATTTCCAGAAGACCAGCCGTGT...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR CCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTGTTCTGATACACGGCTaGTCTTCTGGAAATCTTCCC | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTVLIHG*SSGNLP Trigger: GGGAAGATTTCCAGAAGACCAGCCGTGTATCAGAAC...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR CCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTGAGAGAAGGAGAGCATaGAGTCTGCATAGACTTCTG | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTERRRA*SLHRLL Trigger: CAGAAGTCTATGCAGACTCCATGCTCTCCTTCTCTC...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| 3UTR CAA 72 bp | AAACCCAATAACAGGACTGTAGTTGTTAAAGTACTTTaGGTGGGCAGTAGTGTACTCAATGGTTTGTGTTGC | + |
|
Preference number: 4 (lower is better) Translates to: KPNNRTVVVKVL*VGSSVLNGLCC Trigger: GCAACACAAACCATTGAGTACACTACTGCCCACCAAAAGTACTTTAACAACTACAGTCCTGTTATTGGGTTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
||
| CDS-3UTR TCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTTTTCTATGTAGCCAGTaGACACAAGGCTGGAACCAT | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTFLCSQ*TQGWNH Trigger: ATGGTTCCAGCCTTGTGTTCACTGGCTACATAGAAA...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR TCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTGGACTACAAAAGGCTTaGCATAGGTGTTGGTTATCC | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTGLQKA*HRCWLS Trigger: GGATAACCAACACCTATGTCAAGCCTTTTGTAGTCC...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR GCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTGCAGAAAATCCTGGCTaGCTCAATGTTTGTGAAAGG | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTAENPG*LNVCER Trigger: CCTTTCACAAACATTGAGGCAGCCAGGATTTTCTGC...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR GCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTTTGCAATACAGGAGTTaGAGCAGAAAATCCTGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTLQYRS*SRKSWL Trigger: CAGCCAGGATTTTCTGCTGCAACTCCTGTATTGCAA...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR CCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTTTGGAACCTGGATCTTaGTCACTGCAGTATGCAACT | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTLEPGS*SLQYAT Trigger: AGTTGCATACTGCAGTGACCAAGATCCAGGTTCCAA...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR CCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTCAAAATTGGTCCGATTaGTGGCCCGAGCATTCTTTA | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTQNWSD*WPEHSL Trigger: TAAAGAATGCTCGGGCCACCAATCGGACCAATTTTG...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR TCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTATTTCTGGAATAGTTTaGCAGTGTCACAGAAGCTGG | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTISGIV*QCHRSW Trigger: CCAGCTTCTGTGACACTGTCAAACTATTCCAGAAAT...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR TCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTGTACATAGAGGTAGTTaGAGAGGATTGCAATACAGG | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTVHRGS*RGLQYR Trigger: CCTGTATTGCAATCCTCTTCAACTACCTCTATGTAC...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR GCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTGTCTGCATAGACTTCTaGAGTTCGCTCTTTAACATG | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTVCIDF*SSLFNM Trigger: CATGTTAAAGAGCGAACTGCAGAAGTCTATGCAGAC...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR GCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTGTAGTTGAAGAGGATTaGAATACAGGAGTTGCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTVVEED*NTGVAA Trigger: TGCTGCAACTCCTGTATTGCAATCCTCTTCAACTAC...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR GCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTACTCTCATAAGTGTTTaGTTCCTCACCTTCAGCTGT | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTTLISV*FLTFSC Trigger: ACAGCTGAAGGTGAGGAAGCAAACACTTATGAGAGT...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR GCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTGGTTTGTGTTGCAGTTaGTACGATGTTACTAAGGTC | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTGLCCS*YDVTKV Trigger: GACCTTAGTAACATCGTAGCAACTGCAACACAAACC...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR GCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTAGCATAGCACAGAAATaGAATCCAGTTCGACTTTCC | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTSIAQK*NPVRLS Trigger: GGAAAGTCGAACTGGATTGCATTTCTGTGCTATGCT...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR CCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTCGCTCTTTAACATGTTaGTCCTCTCTAGTTTTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTRSLTC*SSLVFL Trigger: GAGGAAAACTAGAGAGGACCAACATGTTAAAGAGCG...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR CCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTTGCCTAGAACAAATGTaGATAACAGTGGAGCACAGT | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTCLEQM*ITVEHS Trigger: ACTGTGCTCCACTGTTATCCACATTTGTTCTAGGCA...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR TCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTGCTGGAACCATAAAATaGGAGTACATAGAGGTAGTT | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTAGTIK*EYIEVV Trigger: AACTACCTCTATGTACTCTCATTTTATGGTTCCAGC...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR TCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTCTTTCCATAATGTCATaGAGCCTATCACTCCAAACT | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTLSIMS*SLSLQT Trigger: AGTTTGGAGTGATAGGCTTCATGACATTATGGAAAG...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR TCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTTTAAAAACAAGCACCTaGACAGTGTACAGGTCAGAT | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTLKTST*TVYRSD Trigger: ATCTGACCTGTACACTGTTCAGGTGCTTGTTTTTAA...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR GCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTCTCAATGGTTTGTGTTaGAGTTGCTACGATGTTACT | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTLNGLC*SCYDVT Trigger: AGTAACATCGTAGCAACTGCAACACAAACCATTGAG...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR TCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTCTTCCATCTTTTAAGTaGGTGATCGGATATGTGATA | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTLPSFK*VIGYVI Trigger: TATCACATATCCGATCACTCACTTAAAAGATGGAAG...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR TCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTATTGAGACTGTTGATTaGTTGCAGATAGTAGGTAAG | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTIETVD*LQIVGK Trigger: CTTACCTACTATCTGCAATCAATCAACAGTCTCAAT...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR TCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTTGTACGGGTATATTTTaGCTTTGCTGTTGGATTTCT | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTCTGIF*LCCWIS Trigger: AGAAATCCAACAGCAAAGTCAAAATATACCCGTACA...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR TCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTCACAGTAATAGCGTTTaGGGAAACATACCAATAAGT | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTHSNSV*GNIPIS Trigger: ACTTATTGGTATGTTTCCTCAAACGCTATTACTGTG...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR CCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTTTAAAGTACTTTTGGTaGGCAGTAGTGTACTCAATG | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTLKYFW*AVVYSM Trigger: CATTGAGTACACTACTGCCCACCAAAAGTACTTTAA...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR CCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTTTGTTAAAGTACTTTTaGTGGGCAGTAGTGTACTCA | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTLLKYF*WAVVYS Trigger: TGAGTACACTACTGCCCACCAAAAGTACTTTAACAA...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR CCA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTTCTAGAACATCTTCTTaGACACTAGAGTTCCAATAT | + |
|
Preference number: 4 (lower is better) Translates to: ISFLFLVRPRVKIYEADTSRTSS*TLEFQY Trigger: ATATTGGAACTCTAGTGTCCAAGAAGATGTTCTAGA...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS TCA 90 bp | AGCAGGATGGAGATGAGCACCGGCGCCGAAGCAAAGAAGACCGGGTaGCTGGCAATGAAGTGGCCAAGCCGGGAGAAACACGTCCTCAAG | + |
|
Preference number: 5 (lower is better) Translates to: SRMEMSTGAEAKKTG*LAMKWPSREKHVLK Trigger: CTTGAGGACGTGTTTCTCCCGGCTTGGCCACTTCATTGCCAGTCACCCGGTCTTCTTTGCTTCGGCGCCGGTGCTCATCTCCATCCTGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS GCA 90 bp | ACCAACCCAAGTAGGCCTAACCAGGGTTTGCTGCGGACACAGTCCTaGATAGAGCAGCACAGAATAGCCATGGTGACTACCAGGATCAGG | + |
|
Preference number: 5 (lower is better) Translates to: TNPSRPNQGLLRTQS*IEQHRIAMVTTRIR Trigger: CCTGATCCTGGTAGTCACCATGGCTATTCTGTGCTGCTCTATGCAGGACTGTGTCCGCAGCAAACCCTGGTTAGGCCTACTTGGGTTGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS TCA 90 bp | GCTGAATGGCCTCTGCAGATTTCACCCGATCCTTGCTGTGCACAGTaGCACCTCCGAGTTGGTGCCCATTATACACAGCCCTTCCATCTT | + |
|
Preference number: 5 (lower is better) Translates to: AEWPLQISPDPCCAQ*HLRVGAHYTQPFHL Trigger: AAGATGGAAGGGCTGTGTATAATGGGCACCAACTCGGAGGTGTCACTGTGCACAGCAAGGATCGGGTGAAATCTGCAGAGGCCATTCAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS GCA 90 bp | GGCAGTGGTGAGAGAGAAGGAGAGCATGGAGTCTGCATAGACTTCTaGAGTTCGCTCTTTAACATGTTGGTCCTCTCTAGTTTTCCTCCA | + |
|
Preference number: 5 (lower is better) Translates to: GSGEREGEHGVCIDF*SSLFNMLVLSSFPP Trigger: TGGAGGAAAACTAGAGAGGACCAACATGTTAAAGAGCGAACTGCAGAAGTCTATGCAGACTCCATGCTCTCCTTCTCTCTCACCACTGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038665.6 ENSMUST00000170236.2 |
||
| CDS GCA 90 bp | GACCAAGTACATGGCAGTGGTGAGAGAGAAGGAGAGCATGGAGTCTaGATAGACTTCTGCAGTTCGCTCTTTAACATGTTGGTCCTCTCT | + |
|
Preference number: 5 (lower is better) Translates to: DQVHGSGEREGEHGV*IDFCSSLFNMLVLS Trigger: AGAGAGGACCAACATGTTAAAGAGCGAACTGCAGAAGTCTATGCAGACTCCATGCTCTCCTTCTCTCTCACCACTGCCATGTACTTGGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038665.6 ENSMUST00000170236.2 |
||
| CDS TCA 90 bp | GCTGGACTCCCACCTCTCAGCTACCATGTCATTGAGACTGTTGATTaGTTGCAGATAGTAGGTAAGCTGAATGGCCTCTGCAGATTTCAC | + |
|
Preference number: 5 (lower is better) Translates to: AGLPPLSYHVIETVD*LQIVGKLNGLCRFH Trigger: GTGAAATCTGCAGAGGCCATTCAGCTTACCTACTATCTGCAATCAATCAACAGTCTCAATGACATGGTAGCTGAGAGGTGGGAGTCCAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR CAA 90 bp | AAACTCCACAGACACAACCGTGAGAGTGATCCAGACGTTGATCAGCGAATCTGCATTGCAATACAGGAGTaGCAGCAGAAAATCCTGGCT | + |
|
Preference number: 5 (lower is better) Translates to: KLHRHNRESDPDVDQRICIAIQE*QQKILA Trigger: AGCCAGGATTTTCTGCTGCAACTCCTGTATTGCAAT...GCAGATTCGCTGATCAACGTCTGGATCACTCTCACGGTTGTGTCTGTGGAGTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
||
| CDS-3UTR CAA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTCGGTGCTTGGAGCGGTaGACCGGGAAGAGGCTGTTG | + |
|
Preference number: 5 (lower is better) Translates to: ISFLFLVRPRVKIYEADTRCLER*TGKRLL Trigger: CAACAGCCTCTTCCCGGTCAACCGCTCCAAGCACCG...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR CAA 90 bp | TACTCTAGAACATCTTCTTGGACACTAGAGTTCCAATATTCTATGGACTCATATCGGTGCTTGGAGCGGTaGACCGGGAAGAGGCTGTTG | + |
|
Preference number: 5 (lower is better) Translates to: YSRTSSWTLEFQYSMDSYRCLER*TGKRLL Trigger: CAACAGCCTCTTCCCGGTCAACCGCTCCAAGCACCG...ATATGAGTCCATAGAATATTGGAACTCTAGTGTCCAAGAAGATGTTCTAGAGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
||
| CDS-3UTR CAA 90 bp | ACCAGGAATGCCGAGAAGAAGAGCAGGAACAAAGCACTGATGCAGGAATTGTGCTCGCTCTTTAACATGTaGGTCCTCTCTAGTTTTCCT | + |
|
Preference number: 5 (lower is better) Translates to: TRNAEKKSRNKALMQELCSLFNM*VLSSFP Trigger: AGGAAAACTAGAGAGGACCAACATGTTAAAGAGCGA...GCACAATTCCTGCATCAGTGCTTTGTTCCTGCTCTTCTTCTCGGCATTCCTGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170236.2 |
||
| CDS-3UTR CAA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTACCGGGAAGAGGCTGTaGACTAGGTTGCGCTCGATC | + |
|
Preference number: 5 (lower is better) Translates to: ISFLFLVRPRVKIYEADTTGKRL*TRLRSI Trigger: GATCGAGCGCAACCTAGTCAACAGCCTCTTCCCGGT...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR CAA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTGATTTCACCCGATCCTaGCTGTGCACAGTGACACCT | + |
|
Preference number: 5 (lower is better) Translates to: ISFLFLVRPRVKIYEADTDFTRS*LCTVTP Trigger: AGGTGTCACTGTGCACAGCAAGGATCGGGTGAAATC...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR CAA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTGCAAAATTGGTCCGATaGGTGGCCCGAGCATTCTTT | + |
|
Preference number: 5 (lower is better) Translates to: ISFLFLVRPRVKIYEADTAKLVR*VARAFF Trigger: AAAGAATGCTCGGGCCACCAATCGGACCAATTTTGC...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR CAA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTTTTCCACCAGTGAGATaGATGATTCCGGCTGCAGTG | + |
|
Preference number: 5 (lower is better) Translates to: ISFLFLVRPRVKIYEADTFPPVR*MIPAAV Trigger: CACTGCAGCCGGAATCATCAATCTCACTGGTGGAAA...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR CAA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTCCCAGGAAGGTGGAGTaGTATTTTCCACCAGTGAGA | + |
|
Preference number: 5 (lower is better) Translates to: ISFLFLVRPRVKIYEADTPRKVE*YFPPVR Trigger: TCTCACTGGTGGAAAATACAACTCCACCTTCCTGGG...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR CAA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTAGAGTGATCCAGACGTaGATCAGCGAATCTGCTACC | + |
|
Preference number: 5 (lower is better) Translates to: ISFLFLVRPRVKIYEADTRVIQT*ISESAT Trigger: GGTAGCAGATTCGCTGATCAACGTCTGGATCACTCT...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR CAA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTGTGTACAGGTCAGATTaGAAGGCACAGCTGCAAGAG | + |
|
Preference number: 5 (lower is better) Translates to: ISFLFLVRPRVKIYEADTVYRSD*KAQLQE Trigger: CTCTTGCAGCTGTGCCTTCAAATCTGACCTGTACAC...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR CAA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTTATGTGATAGCAAAATaGGTCCGATTGGTGGCCCGA | + |
|
Preference number: 5 (lower is better) Translates to: ISFLFLVRPRVKIYEADTYVIAK*VRLVAR Trigger: TCGGGCCACCAATCGGACCAATTTTGCTATCACATA...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR CAA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTGACTCTCATAAGTGTTaGCTTCCTCACCTTCAGCTG | + |
|
Preference number: 5 (lower is better) Translates to: ISFLFLVRPRVKIYEADTDSHKC*LPHLQL Trigger: CAGCTGAAGGTGAGGAAGCAAACACTTATGAGAGTC...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR CAA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTACAATGAACTTCACCTaGGAGGTGACTGAAAGCCTC | + |
|
Preference number: 5 (lower is better) Translates to: ISFLFLVRPRVKIYEADTTMNFT*EVTESL Trigger: GAGGCTTTCAGTCACCTCCAAGGTGAAGTTCATTGT...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS TCA 90 bp | ATTGTTTTCTATGTAGCCAGTGAACACAAGGCTGGAACCATAAAATaGGAGTACATAGAGGTAGTTGAAGAGGATTGCAATACAGGAGTT | + |
|
Preference number: 5 (lower is better) Translates to: IVFYVASEHKAGTIK*EYIEVVEEDCNTGV Trigger: AACTCCTGTATTGCAATCCTCTTCAACTACCTCTATGTACTCTCATTTTATGGTTCCAGCCTTGTGTTCACTGGCTACATAGAAAACAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR CAA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTATTGCAATACAGGAGTaGCAGCAGAAAATCCTGGCT | + |
|
Preference number: 5 (lower is better) Translates to: ISFLFLVRPRVKIYEADTIAIQE*QQKILA Trigger: AGCCAGGATTTTCTGCTGCAACTCCTGTATTGCAAT...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR CAA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTTCAGCTACCATGTCATaGAGACTGTTGATTGATTGC | + |
|
Preference number: 5 (lower is better) Translates to: ISFLFLVRPRVKIYEADTSATMS*RLLIDC Trigger: GCAATCAATCAACAGTCTCAATGACATGGTAGCTGA...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR CAA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTTCGCTCTTTAACATGTaGGTCCTCTCTAGTTTTCCT | + |
|
Preference number: 5 (lower is better) Translates to: ISFLFLVRPRVKIYEADTSLFNM*VLSSFP Trigger: AGGAAAACTAGAGAGGACCAACATGTTAAAGAGCGA...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR CAA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTACTCAATGGTTTGTGTaGCAGTTGCTACGATGTTAC | + |
|
Preference number: 5 (lower is better) Translates to: ISFLFLVRPRVKIYEADTTQWFV*QLLRCY Trigger: GTAACATCGTAGCAACTGCAACACAAACCATTGAGT...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR CAA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTAGTGTACTCAATGGTTaGTGTTGCAGTTGCTACGAT | + |
|
Preference number: 5 (lower is better) Translates to: ISFLFLVRPRVKIYEADTSVLNG*CCSCYD Trigger: ATCGTAGCAACTGCAACACAAACCATTGAGTACACT...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR CAA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTGTTGTTAAAGTACTTTaGGTGGGCAGTAGTGTACTC | + |
|
Preference number: 5 (lower is better) Translates to: ISFLFLVRPRVKIYEADTVVKVL*VGSSVL Trigger: GAGTACACTACTGCCCACCAAAAGTACTTTAACAAC...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR CAA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTGTGTACGGGTATATTTaGACTTTGCTGTTGGATTTC | + |
|
Preference number: 5 (lower is better) Translates to: ISFLFLVRPRVKIYEADTVYGYI*TLLLDF Trigger: GAAATCCAACAGCAAAGTCAAAATATACCCGTACAC...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS-3UTR CAA 90 bp | ATAAGCTTTTTGTTCTTGGTAAGACCTAGGGTGAAAATATATGAAGCAGACACTGGGTATATTTTGACTTaGCTGTTGGATTTCTGGAAT | + |
|
Preference number: 5 (lower is better) Translates to: ISFLFLVRPRVKIYEADTGYILT*LLDFWN Trigger: ATTCCAGAAATCCAACAGCAAAGTCAAAATATACCC...AGTGTCTGCTTCATATATTTTCACCCTAGGTCTTACCAAGAACAAAAAGCTTAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS TCA 72 bp | CCGGCGCCGAAGCAAAGAAGACCGGGTGACTGGCAATaGAGTGGCCAAGCCGGGAGAAACACGTCCTCAAGC | + |
|
Preference number: 6 (lower is better) Translates to: PAPKQRRPGDWQ*SGQAGRNTSSS Trigger: GCTTGAGGACGTGTTTCTCCCGGCTTGGCCACTTCATTGCCAGTCACCCGGTCTTCTTTGCTTCGGCGCCGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS TCA 72 bp | GAGATGAGCACCGGCGCCGAAGCAAAGAAGACCGGGTaGCTGGCAATGAAGTGGCCAAGCCGGGAGAAACAC | + |
|
Preference number: 6 (lower is better) Translates to: EMSTGAEAKKTG*LAMKWPSREKH Trigger: GTGTTTCTCCCGGCTTGGCCACTTCATTGCCAGTCACCCGGTCTTCTTTGCTTCGGCGCCGGTGCTCATCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS TCA 72 bp | CCTCTGCAGATTTCACCCGATCCTTGCTGTGCACAGTaGCACCTCCGAGTTGGTGCCCATTATACACAGCCC | + |
|
Preference number: 6 (lower is better) Translates to: PLQISPDPCCAQ*HLRVGAHYTQP Trigger: GGGCTGTGTATAATGGGCACCAACTCGGAGGTGTCACTGTGCACAGCAAGGATCGGGTGAAATCTGCAGAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS CAA 90 bp | GTGGCTAGGCTTATGGTCACCAACCCAAGTAGGCCTAACCAGGGTTaGCTGCGGACACAGTCCTGCATAGAGCAGCACAGAATAGCCATG | + |
|
Preference number: 6 (lower is better) Translates to: VARLMVTNPSRPNQG*LRTQSCIEQHRIAM Trigger: CATGGCTATTCTGTGCTGCTCTATGCAGGACTGTGTCCGCAGCAAACCCTGGTTAGGCCTACTTGGGTTGGTGACCATAAGCCTAGCCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS GCA 72 bp | AGTAGGCCTAACCAGGGTTTGCTGCGGACACAGTCCTaGATAGAGCAGCACAGAATAGCCATGGTGACTACC | + |
|
Preference number: 6 (lower is better) Translates to: SRPNQGLLRTQS*IEQHRIAMVTT Trigger: GGTAGTCACCATGGCTATTCTGTGCTGCTCTATGCAGGACTGTGTCCGCAGCAAACCCTGGTTAGGCCTACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS CAA 72 bp | CTTATGGTCACCAACCCAAGTAGGCCTAACCAGGGTTaGCTGCGGACACAGTCCTGCATAGAGCAGCACAGA | + |
|
Preference number: 6 (lower is better) Translates to: LMVTNPSRPNQG*LRTQSCIEQHR Trigger: TCTGTGCTGCTCTATGCAGGACTGTGTCCGCAGCAAACCCTGGTTAGGCCTACTTGGGTTGGTGACCATAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS CCA 72 bp | ACCCGATCCTTGCTGTGCACAGTGACACCTCCGAGTTaGTGCCCATTATACACAGCCCTTCCATCTTTTAAG | + |
|
Preference number: 6 (lower is better) Translates to: TRSLLCTVTPPS*CPLYTALPSFK Trigger: CTTAAAAGATGGAAGGGCTGTGTATAATGGGCACCAACTCGGAGGTGTCACTGTGCACAGCAAGGATCGGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS CAA 72 bp | CCTAGCATGACGAAAGGGACTCCCAGGAAGGTGGAGTaGTATTTTCCACCAGTGAGATTGATGATTCCGGCT | + |
|
Preference number: 6 (lower is better) Translates to: PSMTKGTPRKVE*YFPPVRLMIPA Trigger: AGCCGGAATCATCAATCTCACTGGTGGAAAATACAACTCCACCTTCCTGGGAGTCCCTTTCGTCATGCTAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS TCA 72 bp | CCACCTCTCAGCTACCATGTCATTGAGACTGTTGATTaGTTGCAGATAGTAGGTAAGCTGAATGGCCTCTGC | + |
|
Preference number: 6 (lower is better) Translates to: PPLSYHVIETVD*LQIVGKLNGLC Trigger: GCAGAGGCCATTCAGCTTACCTACTATCTGCAATCAATCAACAGTCTCAATGACATGGTAGCTGAGAGGTGG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS GCA 72 bp | GAGAGAGAAGGAGAGCATGGAGTCTGCATAGACTTCTaGAGTTCGCTCTTTAACATGTTGGTCCTCTCTAGT | + |
|
Preference number: 6 (lower is better) Translates to: EREGEHGVCIDF*SSLFNMLVLSS Trigger: ACTAGAGAGGACCAACATGTTAAAGAGCGAACTGCAGAAGTCTATGCAGACTCCATGCTCTCCTTCTCTCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038665.6 ENSMUST00000170236.2 |
||
| CDS CAA 90 bp | GTGTACGGGTATATTTTGACTTTGCTGTTGGATTTCTGGAATAGTTaGACAGTGTCACAGAAGCTGGACTCCCACCTCTCAGCTACCATG | + |
|
Preference number: 6 (lower is better) Translates to: VYGYILTLLLDFWNS*TVSQKLDSHLSATM Trigger: CATGGTAGCTGAGAGGTGGGAGTCCAGCTTCTGTGACACTGTCAAACTATTCCAGAAATCCAACAGCAAAGTCAAAATATACCCGTACAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS CAA 90 bp | TCCCTCAGTGATGAGGATGTGTACGGGTATATTTTGACTTTGCTGTaGGATTTCTGGAATAGTTTGACAGTGTCACAGAAGCTGGACTCC | + |
|
Preference number: 6 (lower is better) Translates to: SLSDEDVYGYILTLL*DFWNSLTVSQKLDS Trigger: GGAGTCCAGCTTCTGTGACACTGTCAAACTATTCCAGAAATCCAACAGCAAAGTCAAAATATACCCGTACACATCCTCATCACTGAGGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS CCA 72 bp | ACATATGTGAGCAAATGTATAGTTAAAGCCAGGCCTTaGAACCTGGATCTTGGTCACTGCAGTATGCAACTT | + |
|
Preference number: 6 (lower is better) Translates to: TYVSKCIVKARP*NLDLGHCSMQL Trigger: AAGTTGCATACTGCAGTGACCAAGATCCAGGTTCCAAGGCCTGGCTTTAACTATACATTTGCTCACATATGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
||
| CDS TCA 72 bp | GGCTGGAACCATAAAATGAGAGTACATAGAGGTAGTTaGAGAGGATTGCAATACAGGAGTTGCAGCAGAAAA | + |
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Preference number: 6 (lower is better) Translates to: GWNHKMRVHRGS*RGLQYRSCSRK Trigger: TTTTCTGCTGCAACTCCTGTATTGCAATCCTCTTCAACTACCTCTATGTACTCTCATTTTATGGTTCCAGCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038665.6 ENSMUST00000170236.2 |
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| CDS CAA 90 bp | AAATCTTCCCTCAGTGATGAGGATGTGTACGGGTATATTTTGACTTaGCTGTTGGATTTCTGGAATAGTTTGACAGTGTCACAGAAGCTG | + |
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Preference number: 6 (lower is better) Translates to: KSSLSDEDVYGYILT*LLDFWNSLTVSQKL Trigger: CAGCTTCTGTGACACTGTCAAACTATTCCAGAAATCCAACAGCAAAGTCAAAATATACCCGTACACATCCTCATCACTGAGGGAAGATTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
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| CDS CAA 90 bp | TTCTGGAAATCTTCCCTCAGTGATGAGGATGTGTACGGGTATATTTaGACTTTGCTGTTGGATTTCTGGAATAGTTTGACAGTGTCACAG | + |
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Preference number: 6 (lower is better) Translates to: FWKSSLSDEDVYGYI*TLLLDFWNSLTVSQ Trigger: CTGTGACACTGTCAAACTATTCCAGAAATCCAACAGCAAAGTCAAAATATACCCGTACACATCCTCATCACTGAGGGAAGATTTCCAGAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
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| CDS TCA 72 bp | TATGTAGCCAGTGAACACAAGGCTGGAACCATAAAATaGGAGTACATAGAGGTAGTTGAAGAGGATTGCAAT | + |
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Preference number: 6 (lower is better) Translates to: YVASEHKAGTIK*EYIEVVEEDCN Trigger: ATTGCAATCCTCTTCAACTACCTCTATGTACTCTCATTTTATGGTTCCAGCCTTGTGTTCACTGGCTACATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038665.6 ENSMUST00000170236.2 |
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| CDS GCA 72 bp | TTAGCTCTTCCAGGACGTGTACTATGTCATCCACAATaGAAGTCTTATCATTATTCAGGACACATATGTGAG | + |
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Preference number: 6 (lower is better) Translates to: LALPGRVLCHPQ*KSYHYSGHICE Trigger: CTCACATATGTGTCCTGAATAATGATAAGACTTGCATTGTGGATGACATAGTACACGTCCTGGAAGAGCTAA 40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
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| CDS CAA 72 bp | GATGAGGATGTGTACGGGTATATTTTGACTTTGCTGTaGGATTTCTGGAATAGTTTGACAGTGTCACAGAAG | + |
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Preference number: 6 (lower is better) Translates to: DEDVYGYILTLL*DFWNSLTVSQK Trigger: CTTCTGTGACACTGTCAAACTATTCCAGAAATCCAACAGCAAAGTCAAAATATACCCGTACACATCCTCATC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
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| CDS CAA 72 bp | TCTTCCCTCAGTGATGAGGATGTGTACGGGTATATTTaGACTTTGCTGTTGGATTTCTGGAATAGTTTGACA | + |
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Preference number: 6 (lower is better) Translates to: SSLSDEDVYGYI*TLLLDFWNSLT Trigger: TGTCAAACTATTCCAGAAATCCAACAGCAAAGTCAAAATATACCCGTACACATCCTCATCACTGAGGGAAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038665.6 |
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