Pregenerated sensors for PTCD2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021650Ensembl transcript IDs: ENSMUST00000022153.8
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGAAATCCCGTCTGTGGGTACCTCCTGAGCTCCACTCTACTGGGCTaGATTAGCAGCTCTGAGTCTTACTCTGGAGCCTGTGAAACGAGG | + |
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Preference number: 1 (lower is better) Translates to: RNPVCGYLLSSTLLG*ISSSESYSGACETR Trigger: CCTCGTTTCACAGGCTCCAGAGTAAGACTCAGAGCTGCTAATGCAGCCCAGTAGAGTGGAGCTCAGGAGGTACCCACAGACGGGATTTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| 3UTR TCA 90 bp | AAAGGTCAGTCAAGACCAAGAGAAATCCCGTCTGTGGGTACCTCCTaGGCTCCACTCTACTGGGCTGCATTAGCAGCTCTGAGTCTTACT | + |
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Preference number: 1 (lower is better) Translates to: KGQSRPREIPSVGTS*APLYWAALAALSLT Trigger: AGTAAGACTCAGAGCTGCTAATGCAGCCCAGTAGAGTGGAGCTCAGGAGGTACCCACAGACGGGATTTCTCTTGGTCTTGACTGACCTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| 3UTR-3UTR GCA 90 bp | CGGAGACGAGGAAGGCCTCCGCCACTTCCAAAGATGGGAGATGAGGGTTTCAGGCACTGTAGCAGCAGCTaGTCCAGACCAGGGAAATGG | + |
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Preference number: 2 (lower is better) Translates to: RRRGRPPPLPKMGDEGFRHCSSS*SRPGKW Trigger: CCATTTCCCTGGTCTGGAGCAGCTGCTGCTACAGTG...CCTGAAACCCTCATCTCCCATCTTTGGAAGTGGCGGAGGCCTTCCTCGTCTCCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| 3UTR-3UTR GCA 90 bp | ACCTCTGCCGTGAAAGGTCAGTCAAGACCAAGAGAAATCCCGTCTGTGGGTACCTCCACTCTACTGGGCTaGATTAGCAGCTCTGAGTCT | + |
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Preference number: 2 (lower is better) Translates to: TSAVKGQSRPREIPSVGTSTLLG*ISSSES Trigger: AGACTCAGAGCTGCTAATGCAGCCCAGTAGAGTGGA...GGTACCCACAGACGGGATTTCTCTTGGTCTTGACTGACCTTTCACGGCAGAGGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| 3UTR-3UTR CAA 90 bp | CACCTCTGCCGTGAAAGGTCAGTCAAGACCAAGAGAAATCCCGTCTGTGGGTACTTCTGTGGGGCTCCCTaGGCTCGAGCTAGCTCTTCC | + |
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Preference number: 3 (lower is better) Translates to: HLCRERSVKTKRNPVCGYFCGAP*ARASSS Trigger: GGAAGAGCTAGCTCGAGCCAAGGGAGCCCCACAGAA...GTACCCACAGACGGGATTTCTCTTGGTCTTGACTGACCTTTCACGGCAGAGGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| 3UTR GCA 72 bp | GTCTGTGGGTACCTCCTGAGCTCCACTCTACTGGGCTaGATTAGCAGCTCTGAGTCTTACTCTGGAGCCTGT | + |
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Preference number: 3 (lower is better) Translates to: VCGYLLSSTLLG*ISSSESYSGAC Trigger: ACAGGCTCCAGAGTAAGACTCAGAGCTGCTAATGCAGCCCAGTAGAGTGGAGCTCAGGAGGTACCCACAGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| CDS-3UTR GCA 90 bp | CCCGGCCCGGAGCAGCCAGTAATCCACTGTAGCAGCAGCTGCTCCAGACCAGGGTCTGACGAGCTCCACTaGAGAGTCCTCCAGGTCCAG | + |
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Preference number: 4 (lower is better) Translates to: PGPEQPVIHCSSSCSRPGSDELH*RVLQVQ Trigger: CTGGACCTGGAGGACTCTGCAGTGGAGCTCGTCAGA...CCCTGGTCTGGAGCAGCTGCTGCTACAGTGGATTACTGGCTGCTCCGGGCCGGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| CDS-3UTR TCA 90 bp | CTACTGGGCTGCATTAGCAGCTCTGAGTCTTACTCTGGAGCCTGTGAAACGAGGGCAGCAGGCGGAGCCTaGGCCCGTCACCCCGGGATG | + |
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Preference number: 4 (lower is better) Translates to: LLGCISSSESYSGACETRAAGGA*ARHPGM Trigger: CATCCCGGGGTGACGGGCTCAGGCTCCGCCTGCTGC...CCTCGTTTCACAGGCTCCAGAGTAAGACTCAGAGCTGCTAATGCAGCCCAGTAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| CDS-3UTR CCA 90 bp | ACCAAGCGTCAGCACAGGGCCACTGAAGTAAGTAAGATGCCCGGCCCGGAGCAGTTGTCCCGGGGGACGTaGCAGAGCAGAGCATCCAAA | + |
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Preference number: 4 (lower is better) Translates to: TKRQHRATEVSKMPGPEQLSRGT*QSRASK Trigger: TTTGGATGCTCTGCTCTGCCACGTCCCCCGGGACAA...CTGCTCCGGGCCGGGCATCTTACTTACTTCAGTGGCCCTGTGCTGACGCTTGGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| CDS-3UTR CCA 90 bp | CCCGGCCCGGAGCAGCCAGTAATCCACTGTAGCAGCAGCTGCTCCAGACCAGGGTTAACAGCAACAAGTTaGATCTCTTGTCCCGGGGGA | + |
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Preference number: 4 (lower is better) Translates to: PGPEQPVIHCSSSCSRPGLTATS*ISCPGG Trigger: TCCCCCGGGACAAGAGATCCAACTTGTTGCTGTTAA...CCCTGGTCTGGAGCAGCTGCTGCTACAGTGGATTACTGGCTGCTCCGGGCCGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| CDS-3UTR TCA 90 bp | ACCTCTGCCGTGAAAGGTCAGTCAAGACCAAGAGAAATCCCGTCTGTGGGTACCTCAGCAGGGACCGGCTaGGAGGCTGTAAGGTCCGGT | + |
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Preference number: 4 (lower is better) Translates to: TSAVKGQSRPREIPSVGTSAGTG*EAVRSG Trigger: ACCGGACCTTACAGCCTCTCAGCCGGTCCCTGCTGA...GGTACCCACAGACGGGATTTCTCTTGGTCTTGACTGACCTTTCACGGCAGAGGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| 3UTR CAA 72 bp | GTGAAACGAGGGCAGCTGCCTTTCTGTGGGGCTCCCTaGGCTCGAGCTAGCTCTTCCCATTTCTCTGGTAGC | + |
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Preference number: 4 (lower is better) Translates to: VKRGQLPFCGAP*ARASSSHFSGS Trigger: GCTACCAGAGAAATGGGAAGAGCTAGCTCGAGCCAAGGGAGCCCCACAGAAAGGCAGCTGCCCTCGTTTCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| CDS-3UTR TCA 90 bp | ACCAAGCGTCAGCACAGGGCCACTGAAGTAAGTAAGATGCCCGGCCCGGAGCAGACTCTTCCTTCAAGATaGGTTTGTTCTGGGTCAACT | + |
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Preference number: 4 (lower is better) Translates to: TKRQHRATEVSKMPGPEQTLPSR*VCSGST Trigger: AGTTGACCCAGAACAAACTCATCTTGAAGGAAGAGT...CTGCTCCGGGCCGGGCATCTTACTTACTTCAGTGGCCCTGTGCTGACGCTTGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| CDS-3UTR TCA 90 bp | TACTGGGCTGCATTAGCAGCTCTGAGTCTTACTCTGGAGCCTGTGAAACGAGGGGGCCAGCACTTCCTCTaGGAATGTGTGTCTTCTTAC | + |
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Preference number: 4 (lower is better) Translates to: YWAALAALSLTLEPVKRGGQHFL*ECVSSY Trigger: GTAAGAAGACACACATTCTCAGAGGAAGTGCTGGCC...CCCTCGTTTCACAGGCTCCAGAGTAAGACTCAGAGCTGCTAATGCAGCCCAGTA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| CDS-3UTR TCA 90 bp | TCAGTCAAGACCAAGAGAAATCCCGTCTGTGGGTACCTCCTGAGCTCCACTCTACGTAGCACAGCCTCATaGAAACTGGTCCGAACTTGT | + |
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Preference number: 4 (lower is better) Translates to: SVKTKRNPVCGYLLSSTLRSTAS*KLVRTC Trigger: ACAAGTTCGGACCAGTTTTCATGAGGCTGTGCTACG...TAGAGTGGAGCTCAGGAGGTACCCACAGACGGGATTTCTCTTGGTCTTGACTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| CDS-3UTR TCA 90 bp | GGGCTCCCTTGGCTCGAGCTAGCTCTTCCCATTTCTCTGGTAGCATGTCACCACTGTAGGTTTCTTTGCTaGACCTCACATCTTGGTTTT | + |
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Preference number: 4 (lower is better) Translates to: GLPWLELALPISLVACHHCRFLC*TSHLGF Trigger: AAAACCAAGATGTGAGGTTCAGCAAAGAAACCTACA...GTGGTGACATGCTACCAGAGAAATGGGAAGAGCTAGCTCGAGCCAAGGGAGCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| CDS-3UTR TCA 90 bp | TGTGGGGCTCCCTTGGCTCGAGCTAGCTCTTCCCATTTCTCTGGTAGCATGTCATGTATTCCCCCAAAGTaGAATTCTTGTTTTCTGCAT | + |
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Preference number: 4 (lower is better) Translates to: CGAPLARASSSHFSGSMSCIPPK*NSCFLH Trigger: ATGCAGAAAACAAGAATTTCACTTTGGGGGAATACA...TGACATGCTACCAGAGAAATGGGAAGAGCTAGCTCGAGCCAAGGGAGCCCCACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| CDS-3UTR GCA 90 bp | TCAGTCAAGACCAAGAGAAATCCCGTCTGTGGGTACCTCCTGAGCTCCACTCTACAGTTTGTAGCAGATTaGAAAAGCGAGGATGTAGGT | + |
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Preference number: 4 (lower is better) Translates to: SVKTKRNPVCGYLLSSTLQFVAD*KSEDVG Trigger: ACCTACATCCTCGCTTTTGCAATCTGCTACAAACTG...TAGAGTGGAGCTCAGGAGGTACCCACAGACGGGATTTCTCTTGGTCTTGACTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| CDS-3UTR GCA 90 bp | CAGCCAGTAATCCACTGTAGCAGCAGCTGCTCCAGACCAGGGAAATGGAAAGCACACTACAAAACAGTATaGTCTCCTGCAGATAATGTC | + |
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Preference number: 4 (lower is better) Translates to: QPVIHCSSSCSRPGKWKAHYKTV*SPADNV Trigger: GACATTATCTGCAGGAGAGCATACTGTTTTGTAGTG...TGCTTTCCATTTCCCTGGTCTGGAGCAGCTGCTGCTACAGTGGATTACTGGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| CDS-3UTR GCA 90 bp | CCTCCGCCACTTCCAAAGATGGGAGATGAGGGTTTCAGGTCTCCCCACCAACTTAATAGATTTCTTTGGTaGCAGGTAGGTTATATGCAA | + |
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Preference number: 4 (lower is better) Translates to: PPPLPKMGDEGFRSPHQLNRFLW*QVGYMQ Trigger: TTGCATATAACCTACCTGGCACCAAAGAAATCTATT...AAGTTGGTGGGGAGACCTGAAACCCTCATCTCCCATCTTTGGAAGTGGCGGAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| CDS-3UTR CCA 90 bp | CACCTCTGCCGTGAAAGGTCAGTCAAGACCAAGAGAAATCCCGTCTGTGGGTACCTGAACCTCACATCTTaGTTTTTCATTTCGATCAAC | + |
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Preference number: 4 (lower is better) Translates to: HLCRERSVKTKRNPVCGYLNLTS*FFISIN Trigger: GTTGATCGAAATGAAAAACCAAGATGTGAGGTTCAG...GTACCCACAGACGGGATTTCTCTTGGTCTTGACTGACCTTTCACGGCAGAGGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| CDS-3UTR GCA 90 bp | ATTAGCAGCTCTGAGTCTTACTCTGGAGCCTGTGAAACGAGGGCAGCTGCCTTTGATCAACACTTGAAGTaGACGTTCATATTTGCCTTT | + |
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Preference number: 4 (lower is better) Translates to: ISSSESYSGACETRAAAFDQHLK*TFIFAF Trigger: AAAGGCAAATATGAACGTGCACTTCAAGTGTTGATC...AAAGGCAGCTGCCCTCGTTTCACAGGCTCCAGAGTAAGACTCAGAGCTGCTAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| CDS-3UTR CCA 90 bp | TCAGTCAAGACCAAGAGAAATCCCGTCTGTGGGTACCTCCTGAGCTCCACTCTAACAGCGTTTTTCAACTaGTTCTTATTCAGAGCTAAT | + |
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Preference number: 4 (lower is better) Translates to: SVKTKRNPVCGYLLSSTLTAFFN*FLFRAN Trigger: ATTAGCTCTGAATAAGAACCAGTTGAAAAACGCTGT...TAGAGTGGAGCTCAGGAGGTACCCACAGACGGGATTTCTCTTGGTCTTGACTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| CDS GCA 90 bp | AGAGTGCAGCGGCAGCAGGCGGAGCCTGAGCCCGTCACCCCGGGATaGAGCGAAGGACGCGGCACCCGCAGGCGTTCCAGGGGCCGAAAC | + |
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Preference number: 5 (lower is better) Translates to: RVQRQQAEPEPVTPG*SEGRGTRRRSRGRN Trigger: GTTTCGGCCCCTGGAACGCCTGCGGGTGCCGCGTCCTTCGCTGCATCCCGGGGTGACGGGCTCAGGCTCCGCCTGCTGCCGCTGCACTCT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| CDS-3UTR CAA 90 bp | CGAGGAAGGCCTCCGCCACTTCCAAAGATGGGAGATGAGGGTTTCAGGTCTCCCAAAACTGGTCCGAACTaGTATTCCCCCAAAGTGAAA | + |
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Preference number: 5 (lower is better) Translates to: RGRPPPLPKMGDEGFRSPKTGPN*YSPKVK Trigger: TTTCACTTTGGGGGAATACAAGTTCGGACCAGTTTT...GGGAGACCTGAAACCCTCATCTCCCATCTTTGGAAGTGGCGGAGGCCTTCCTCG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| CDS-3UTR CAA 90 bp | CACCTCTGCCGTGAAAGGTCAGTCAAGACCAAGAGAAATCCCGTCTGTGGGTACAGTTTTTCCCTCACTTaGGCCAGCACTTCCTCTGAG | + |
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Preference number: 5 (lower is better) Translates to: HLCRERSVKTKRNPVCGYSFSLT*ASTSSE Trigger: CTCAGAGGAAGTGCTGGCCAAAGTGAGGGAAAAACT...GTACCCACAGACGGGATTTCTCTTGGTCTTGACTGACCTTTCACGGCAGAGGTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| CDS-3UTR CAA 90 bp | TGTGGGGCTCCCTTGGCTCGAGCTAGCTCTTCCCATTTCTCTGGTAGCATGTCATCCTTCAAGATGAGTTaGTTCTGGGTCAACTTCTCT | + |
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Preference number: 5 (lower is better) Translates to: CGAPLARASSSHFSGSMSSFKMS*FWVNFS Trigger: AGAGAAGTTGACCCAGAACAAACTCATCTTGAAGGA...TGACATGCTACCAGAGAAATGGGAAGAGCTAGCTCGAGCCAAGGGAGCCCCACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| CDS-3UTR CAA 90 bp | GGGCTCCCTTGGCTCGAGCTAGCTCTTCCCATTTCTCTGGTAGCATGTCACCACGCTGAACCTCACATCTaGGTTTTTCATTTCGATCAA | + |
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Preference number: 5 (lower is better) Translates to: GLPWLELALPISLVACHHAEPHI*VFHFDQ Trigger: TTGATCGAAATGAAAAACCAAGATGTGAGGTTCAGC...GTGGTGACATGCTACCAGAGAAATGGGAAGAGCTAGCTCGAGCCAAGGGAGCCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| CDS-3UTR CAA 90 bp | ACCTCTGCCGTGAAAGGTCAGTCAAGACCAAGAGAAATCCCGTCTGTGGGTACCTCAGTTTGTAGCAGATaGCAAAAGCGAGGATGTAGG | + |
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Preference number: 5 (lower is better) Translates to: TSAVKGQSRPREIPSVGTSVCSR*QKRGCR Trigger: CCTACATCCTCGCTTTTGCAATCTGCTACAAACTGA...GGTACCCACAGACGGGATTTCTCTTGGTCTTGACTGACCTTTCACGGCAGAGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| CDS GCA 90 bp | AGTACAGATTTTAAGCGATTCCAGGGTATTCAGTTTGTAGCAGATTaGAAAAGCGAGGATGTAGGTTTCTTTGCTGAACCTCACATCTTG | + |
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Preference number: 5 (lower is better) Translates to: STDFKRFQGIQFVAD*KSEDVGFFAEPHIL Trigger: CAAGATGTGAGGTTCAGCAAAGAAACCTACATCCTCGCTTTTGCAATCTGCTACAAACTGAATACCCTGGAATCGCTTAAAATCTGTACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| CDS TCA 90 bp | TCAGTTTGTAGCAGATTGCAAAAGCGAGGATGTAGGTTTCTTTGCTaGACCTCACATCTTGGTTTTTCATTTCGATCAACACTTGAAGTG | + |
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Preference number: 5 (lower is better) Translates to: SVCSRLQKRGCRFLC*TSHLGFSFRSTLEV Trigger: CACTTCAAGTGTTGATCGAAATGAAAAACCAAGATGTGAGGTTCAGCAAAGAAACCTACATCCTCGCTTTTGCAATCTGCTACAAACTGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| CDS TCA 72 bp | CGTGCAGCTTCCCATAGACCTCATCGAATCTGGCTATaGGTGCAGGGCTGTCCTTCAGTTTTTCCCTCACTT | + |
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Preference number: 6 (lower is better) Translates to: RAASHRPHRIWL*VQGCPSVFPSL Trigger: AAGTGAGGGAAAAACTGAAGGACAGCCCTGCACTCATAGCCAGATTCGATGAGGTCTATGGGAAGCTGCACG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| CDS GCA 72 bp | CAGCTTCCCATAGACCTCATCGAATCTGGCTATGAGTaGAGGGCTGTCCTTCAGTTTTTCCCTCACTTTGGC | + |
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Preference number: 6 (lower is better) Translates to: QLPIDLIESGYE*RAVLQFFPHFG Trigger: GCCAAAGTGAGGGAAAAACTGAAGGACAGCCCTGCACTCATAGCCAGATTCGATGAGGTCTATGGGAAGCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| CDS CAA 72 bp | AATGACGTTGAATCTAGGAAGAAGCCTTGTAGATGCTaGTCTCTGACGAGCTCCACTGCAGAGTCCTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: NDVESRKKPCRC*SLTSSTAESSR Trigger: CCTGGAGGACTCTGCAGTGGAGCTCGTCAGAGACAAGCATCTACAAGGCTTCTTCCTAGATTCAACGTCATT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| CDS GCA 72 bp | TTGAATGACGTTGAATCTAGGAAGAAGCCTTGTAGATaGTTGTCTCTGACGAGCTCCACTGCAGAGTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: LNDVESRKKPCR*LSLTSSTAESS Trigger: GGAGGACTCTGCAGTGGAGCTCGTCAGAGACAAGCATCTACAAGGCTTCTTCCTAGATTCAACGTCATTCAA 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| CDS CAA 72 bp | AGCGAGGATGTAGGTTTCTTTGCTGAACCTCACATCTaGGTTTTTCATTTCGATCAACACTTGAAGTGCACG | + |
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Preference number: 6 (lower is better) Translates to: SEDVGFFAEPHI*VFHFDQHLKCT Trigger: CGTGCACTTCAAGTGTTGATCGAAATGAAAAACCAAGATGTGAGGTTCAGCAAAGAAACCTACATCCTCGCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| CDS GCA 72 bp | TTTAAGCGATTCCAGGGTATTCAGTTTGTAGCAGATTaGAAAAGCGAGGATGTAGGTTTCTTTGCTGAACCT | + |
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Preference number: 6 (lower is better) Translates to: FKRFQGIQFVAD*KSEDVGFFAEP Trigger: AGGTTCAGCAAAGAAACCTACATCCTCGCTTTTGCAATCTGCTACAAACTGAATACCCTGGAATCGCTTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| CDS TCA 72 bp | AGCAGATTGCAAAAGCGAGGATGTAGGTTTCTTTGCTaGACCTCACATCTTGGTTTTTCATTTCGATCAACA | + |
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Preference number: 6 (lower is better) Translates to: SRLQKRGCRFLC*TSHLGFSFRST Trigger: TGTTGATCGAAATGAAAAACCAAGATGTGAGGTTCAGCAAAGAAACCTACATCCTCGCTTTTGCAATCTGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| CDS CAA 90 bp | GATTGCAAAAGCGAGGATGTAGGTTTCTTTGCTGAACCTCACATCTaGGTTTTTCATTTCGATCAACACTTGAAGTGCACGTTCATATTT | + |
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Preference number: 6 (lower is better) Translates to: DCKSEDVGFFAEPHI*VFHFDQHLKCTFIF Trigger: AAATATGAACGTGCACTTCAAGTGTTGATCGAAATGAAAAACCAAGATGTGAGGTTCAGCAAAGAAACCTACATCCTCGCTTTTGCAATC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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| CDS CAA 90 bp | GCACTTCCTCTGAGAATGTGTGTCTTCTTACAAATTTCGATAAATTaGTGTCAAGAGAGTCCTCTAAGATCTTTAACAGGCTTTCCAACA | + |
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Preference number: 6 (lower is better) Translates to: ALPLRMCVFLQISIN*CQESPLRSLTGFPT Trigger: TGTTGGAAAGCCTGTTAAAGATCTTAGAGGACTCTCTTGACACAAATTTATCGAAATTTGTAAGAAGACACACATTCTCAGAGGAAGTGC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022153.8 |
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