Pregenerated sensors for PSTK (Mus musculus)
Ensembl gene IDs: ENSMUSG00000063179Ensembl transcript IDs: ENSMUST00000075610.13, ENSMUST00000128092.3, ENSMUST00000133284.3, ENSMUST00000141914.3, ENSMUST00000145114.8, ENSMUST00000207489.2
Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCCAGGCATTTTTCTCAGGGTTGGGCTTCTCTATCTTTCTCCCCATaGGCTGGATGGTCTCGTCAGGCAGTGGCTGGGACCTCTCACCAT | + |
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Preference number: 1 (lower is better) Translates to: PRHFSQGWASLSFSP*AGWSRQAVAGTSHH Trigger: ATGGTGAGAGGTCCCAGCCACTGCCTGACGAGACCATCCAGCTCATGGGGAGAAAGATAGAGAAGCCCAACCCTGAGAAAAATGCCTGGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000141914.3 |
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| 3UTR CCA 90 bp | TCTATCTTTCTCCCCATGAGCTGGATGGTCTCGTCAGGCAGTGGCTaGGACCTCTCACCATTCCTCTTCAAACATGTCTCCAGGGGACAG | + |
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Preference number: 1 (lower is better) Translates to: SIFLPMSWMVSSGSG*DLSPFLFKHVSRGQ Trigger: CTGTCCCCTGGAGACATGTTTGAAGAGGAATGGTGAGAGGTCCCAGCCACTGCCTGACGAGACCATCCAGCTCATGGGGAGAAAGATAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000141914.3 |
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| 3UTR CCA 90 bp | CTTCTCTATCTTTCTCCCCATGAGCTGGATGGTCTCGTCAGGCAGTaGCTGGGACCTCTCACCATTCCTCTTCAAACATGTCTCCAGGGG | + |
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Preference number: 1 (lower is better) Translates to: LLYLSPHELDGLVRQ*LGPLTIPLQTCLQG Trigger: CCCCTGGAGACATGTTTGAAGAGGAATGGTGAGAGGTCCCAGCCACTGCCTGACGAGACCATCCAGCTCATGGGGAGAAAGATAGAGAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000141914.3 |
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| 3UTR CCA 90 bp | GCATTTTTCTCAGGGTTGGGCTTCTCTATCTTTCTCCCCATGAGCTaGATGGTCTCGTCAGGCAGTGGCTGGGACCTCTCACCATTCCTC | + |
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Preference number: 1 (lower is better) Translates to: AFFSGLGFSIFLPMS*MVSSGSGWDLSPFL Trigger: GAGGAATGGTGAGAGGTCCCAGCCACTGCCTGACGAGACCATCCAGCTCATGGGGAGAAAGATAGAGAAGCCCAACCCTGAGAAAAATGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000141914.3 |
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| 3UTR TCA 90 bp | TCACCTCCAGGCTGGCTTCCAGAGAACATGCTGAACTCTGAATTATaGGGCTGTTGTGTTCCCAGGCATTTTTCTCAGGGTTGGGCTTCT | + |
|
Preference number: 1 (lower is better) Translates to: SPPGWLPENMLNSEL*GCCVPRHFSQGWAS Trigger: AGAAGCCCAACCCTGAGAAAAATGCCTGGGAACACAACAGCCTCATAATTCAGAGTTCAGCATGTTCTCTGGAAGCCAGCCTGGAGGTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000141914.3 |
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| 3UTR-3UTR GCA 90 bp | TCCTCTTGCAGTCTCTTCCATGTCTCTCTCACACAGGCGAGAAGCCTCACAGGTATGTCCATTTGCATCTaGTTACGAGCGCCACCTGGA | + |
|
Preference number: 2 (lower is better) Translates to: SSCSLFHVSLTQARSLTGMSICI*LRAPPG Trigger: TCCAGGTGGCGCTCGTAAGCAGATGCAAATGGACAT...ACCTGTGAGGCTTCTCGCCTGTGTGAGAGAGACATGGAAGAGACTGCAAGAGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207489.2 |
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| 3UTR-3UTR CCA 90 bp | ATTATGAGGCTGTTGTGTTCCCAGGCATTTTTCTCAGGGTTGGGCTTCTCTATCTCGTCAGGCAGTGGCTaGGACCTCTCACCATTCCTC | + |
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Preference number: 2 (lower is better) Translates to: IMRLLCSQAFFSGLGFSISSGSG*DLSPFL Trigger: GAGGAATGGTGAGAGGTCCCAGCCACTGCCTGACGA...GATAGAGAAGCCCAACCCTGAGAAAAATGCCTGGGAACACAACAGCCTCATAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000141914.3 |
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| 3UTR CAA 90 bp | CACATGCAGTGGACAAACATGAAAAGTCCTATGAGTGAGCTCCTCTaGCAGTCTCTTCCATGTCTCTCTCACACAGGCGAGAAGCCTCAC | + |
|
Preference number: 2 (lower is better) Translates to: HMQWTNMKSPMSELL*QSLPCLSHTGEKPH Trigger: GTGAGGCTTCTCGCCTGTGTGAGAGAGACATGGAAGAGACTGCAAGAGGAGCTCACTCATAGGACTTTTCATGTTTGTCCACTGCATGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207489.2 |
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| 3UTR-3UTR TCA 90 bp | TTTCCTTGTCTTAGATCTTCCAAAACATCTGCTTTGAGCTTGTTAAGTTCTTCTAAGTCAGTGGTTTGCTaGAAGCACAGATATTTTCTA | + |
|
Preference number: 2 (lower is better) Translates to: FPCLRSSKTSALSLLSSSKSVVC*KHRYFL Trigger: TAGAAAATATCTGTGCTTTCAGCAAACCACTGACTT...AGAAGAACTTAACAAGCTCAAAGCAGATGTTTTGGAAGATCTAAGACAAGGAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000128092.3 ENSMUST00000133284.3 ENSMUST00000145114.8 |
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| 3UTR GCA 72 bp | GAAGCCTCACAGGTGTCACTTATGTCCATTTGCATCTaGTTACGAGCGCCACCTGGAAGCCCATATGCGCTC | + |
|
Preference number: 3 (lower is better) Translates to: EASQVSLMSICI*LRAPPGSPYAL Trigger: GAGCGCATATGGGCTTCCAGGTGGCGCTCGTAAGCAGATGCAAATGGACATAAGTGACACCTGTGAGGCTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207489.2 |
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| 3UTR CCA 72 bp | CTTTCTCCCCATGAGCTGGATGGTCTCGTCAGGCAGTaGCTGGGACCTCTCACCATTCCTCTTCAAACATGT | + |
|
Preference number: 3 (lower is better) Translates to: LSPHELDGLVRQ*LGPLTIPLQTC Trigger: ACATGTTTGAAGAGGAATGGTGAGAGGTCCCAGCCACTGCCTGACGAGACCATCCAGCTCATGGGGAGAAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000141914.3 |
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| 3UTR GCA 72 bp | AGGCGAGAAGCCTCACAGGTGTCACTTATGTCCATTTaGATCTGCTTACGAGCGCCACCTGGAAGCCCATAT | + |
|
Preference number: 3 (lower is better) Translates to: RREASQVSLMSI*ICLRAPPGSPY Trigger: ATATGGGCTTCCAGGTGGCGCTCGTAAGCAGATGCAAATGGACATAAGTGACACCTGTGAGGCTTCTCGCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207489.2 |
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| 3UTR TCA 72 bp | ACCTCCAGGCTGGCTTCCAGAGAACATGCTGAACTCTaGATTATGAGGCTGTTGTGTTCCCAGGCATTTTTC | + |
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Preference number: 3 (lower is better) Translates to: TSRLASREHAEL*IMRLLCSQAFF Trigger: GAAAAATGCCTGGGAACACAACAGCCTCATAATTCAGAGTTCAGCATGTTCTCTGGAAGCCAGCCTGGAGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000141914.3 |
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| 3UTR TCA 72 bp | AGAGGTATTTGTTCATCTTTGGCTTCCCTCATCGTCTaGGAGACAGTTCTTCGGAGTGTCTCATCAGCTTTA | + |
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Preference number: 3 (lower is better) Translates to: RGICSSLASLIV*ETVLRSVSSAL Trigger: TAAAGCTGATGAGACACTCCGAAGAACTGTCTCTCAGACGATGAGGGAAGCCAAAGATGAACAAATACCTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000145114.8 |
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| CDS-3UTR GCA 90 bp | CTCTATCTTTCTCCCCATGAGCTGGATGGTCTCGTCAGGCAGTGGCTGGGACCTTGGGCTGTCCGTCTCTaGGAGTGGCCCCACGAGCCG | + |
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Preference number: 4 (lower is better) Translates to: LYLSPHELDGLVRQWLGPWAVRL*EWPHEP Trigger: CGGCTCGTGGGGCCACTCGCAGAGACGGACAGCCCA...AGGTCCCAGCCACTGCCTGACGAGACCATCCAGCTCATGGGGAGAAAGATAGAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000141914.3 |
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| CDS-3UTR CCA 90 bp | CCCCATGAGCTGGATGGTCTCGTCAGGCAGTGGCTGGGACCTCTCACCATTCCTCGCACAGTCCTAGTTTaGGCTGTCCGTCTCTGCGAG | + |
|
Preference number: 4 (lower is better) Translates to: PHELDGLVRQWLGPLTIPRTVLV*AVRLCE Trigger: CTCGCAGAGACGGACAGCCCAAACTAGGACTGTGCG...AGGAATGGTGAGAGGTCCCAGCCACTGCCTGACGAGACCATCCAGCTCATGGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000141914.3 |
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| CDS-3UTR TCA 90 bp | ATCTTTGGCTTCCCTCATCGTCTGAGAGACAGTTCTTCGGAGTGTCTCATCAGCGGTGGGGCAGACATCTaGGCCCCACTAATGACCGCC | + |
|
Preference number: 4 (lower is better) Translates to: IFGFPHRLRDSSSECLISGGADI*APLMTA Trigger: GGCGGTCATTAGTGGGGCTCAGATGTCTGCCCCACC...GCTGATGAGACACTCCGAAGAACTGTCTCTCAGACGATGAGGGAAGCCAAAGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000145114.8 |
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| 3UTR CAA 72 bp | CAGGCGAGAAGCCTCACAGGTGTCACTTATGTCCATTaGCATCTGCTTACGAGCGCCACCTGGAAGCCCATA | + |
|
Preference number: 4 (lower is better) Translates to: QARSLTGVTYVH*HLLTSATWKPI Trigger: TATGGGCTTCCAGGTGGCGCTCGTAAGCAGATGCAAATGGACATAAGTGACACCTGTGAGGCTTCTCGCCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207489.2 |
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| CDS-3UTR CCA 90 bp | ATCTTTGGCTTCCCTCATCGTCTGAGAGACAGTTCTTCGGAGTGTCTCATCAGCTCGTCAGGCAGTGGCTaGGACCTCTCACCATTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: IFGFPHRLRDSSSECLISSSGSG*DLSPFL Trigger: GAGGAATGGTGAGAGGTCCCAGCCACTGCCTGACGA...GCTGATGAGACACTCCGAAGAACTGTCTCTCAGACGATGAGGGAAGCCAAAGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000145114.8 |
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| CDS-3UTR TCA 90 bp | CCTCACAGGTGTCACTTATGTCCATTTGCATCTGCTTACGAGCGCCACCTGGAACTATCTTTCTCCCCATaGGCTGGATGGTCTCGTCAG | + |
|
Preference number: 4 (lower is better) Translates to: PHRCHLCPFASAYERHLELSFSP*AGWSRQ Trigger: CTGACGAGACCATCCAGCTCATGGGGAGAAAGATAG...TTCCAGGTGGCGCTCGTAAGCAGATGCAAATGGACATAAGTGACACCTGTGAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207489.2 |
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| CDS-3UTR TCA 90 bp | ATCTTTGGCTTCCCTCATCGTCTGAGAGACAGTTCTTCGGAGTGTCTCATCAGCCTATCTTTCTCCCCATaGGCTGGATGGTCTCGTCAG | + |
|
Preference number: 4 (lower is better) Translates to: IFGFPHRLRDSSSECLISLSFSP*AGWSRQ Trigger: CTGACGAGACCATCCAGCTCATGGGGAGAAAGATAG...GCTGATGAGACACTCCGAAGAACTGTCTCTCAGACGATGAGGGAAGCCAAAGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000145114.8 |
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| CDS-3UTR GCA 90 bp | ATGCTTCAAGTTATTAAGAGGTATTTGTTCATCTTTGGCTTCCCTCATCGTCTGTGGGCTGTCCGTCTCTaGGAGTGGCCCCACGAGCCG | + |
|
Preference number: 4 (lower is better) Translates to: MLQVIKRYLFIFGFPHRLWAVRL*EWPHEP Trigger: CGGCTCGTGGGGCCACTCGCAGAGACGGACAGCCCA...CAGACGATGAGGGAAGCCAAAGATGAACAAATACCTCTTAATAACTTGAAGCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000145114.8 |
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| CDS-3UTR CCA 90 bp | TTCCCTCATCGTCTGAGAGACAGTTCTTCGGAGTGTCTCATCAGCTTTATGAAGGGTCTCGTCAGGCAGTaGCTGGGACCTCTCACCATT | + |
|
Preference number: 4 (lower is better) Translates to: FPHRLRDSSSECLISFMKGLVRQ*LGPLTI Trigger: AATGGTGAGAGGTCCCAGCCACTGCCTGACGAGACC...CTTCATAAAGCTGATGAGACACTCCGAAGAACTGTCTCTCAGACGATGAGGGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000145114.8 |
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| CDS-3UTR CCA 90 bp | ATGAAAAGTCCTATGAGTGAGCTCCTCTTGCAGTCTCTTCCATGTCTCTCTCACGGTCTCGTCAGGCAGTaGCTGGGACCTCTCACCATT | + |
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Preference number: 4 (lower is better) Translates to: MKSPMSELLLQSLPCLSHGLVRQ*LGPLTI Trigger: AATGGTGAGAGGTCCCAGCCACTGCCTGACGAGACC...GTGAGAGAGACATGGAAGAGACTGCAAGAGGAGCTCACTCATAGGACTTTTCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207489.2 |
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| CDS-3UTR TCA 90 bp | CCTCACAGGTGTCACTTATGTCCATTTGCATCTGCTTACGAGCGCCACCTGGAACTGAACTCTGAATTATaGGGCTGTTGTGTTCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: PHRCHLCPFASAYERHLELNSEL*GCCVPR Trigger: CCTGGGAACACAACAGCCTCATAATTCAGAGTTCAG...TTCCAGGTGGCGCTCGTAAGCAGATGCAAATGGACATAAGTGACACCTGTGAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207489.2 |
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| CDS-3UTR CCA 90 bp | CACATGCAGTGGACAAACATGAAAAGTCCTATGAGTGAGCTCCTCTTGCAGTCTCAGTCACCTCCAGGCTaGCTTCCAGAGAACATGCTG | + |
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Preference number: 4 (lower is better) Translates to: HMQWTNMKSPMSELLLQSQSPPG*LPENML Trigger: CAGCATGTTCTCTGGAAGCCAGCCTGGAGGTGACTG...AGACTGCAAGAGGAGCTCACTCATAGGACTTTTCATGTTTGTCCACTGCATGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207489.2 |
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| CDS-3UTR TCA 90 bp | CCTATGAGTGAGCTCCTCTTGCAGTCTCTTCCATGTCTCTCTCACACAGGCGAGGTCTCATCAGCTTTATaGAGGATGTTAGTAGAACAG | + |
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Preference number: 4 (lower is better) Translates to: PMSELLLQSLPCLSHTGEVSSAL*RMLVEQ Trigger: CTGTTCTACTAACATCCTTCATAAAGCTGATGAGAC...CTCGCCTGTGTGAGAGAGACATGGAAGAGACTGCAAGAGGAGCTCACTCATAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207489.2 |
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| CDS-3UTR CCA 90 bp | ATGCTTCAAGTTATTAAGAGGTATTTGTTCATCTTTGGCTTCCCTCATCGTCTGCTCAGTCCTGTTGGGTaGGGCAGACATCTGAGCCCC | + |
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Preference number: 4 (lower is better) Translates to: MLQVIKRYLFIFGFPHRLLSPVG*GRHLSP Trigger: GGGGCTCAGATGTCTGCCCCACCCAACAGGACTGAG...CAGACGATGAGGGAAGCCAAAGATGAACAAATACCTCTTAATAACTTGAAGCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000145114.8 |
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| CDS-3UTR TCA 90 bp | TTTGTTCATCTTTGGCTTCCCTCATCGTCTGAGAGACAGTTCTTCGGAGTGTCTCTGAACTCTGAATTATaGGGCTGTTGTGTTCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: FVHLWLPSSSERQFFGVSLNSEL*GCCVPR Trigger: CCTGGGAACACAACAGCCTCATAATTCAGAGTTCAG...AGACACTCCGAAGAACTGTCTCTCAGACGATGAGGGAAGCCAAAGATGAACAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000145114.8 |
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| CDS-3UTR CCA 90 bp | TGTCTTAGATCTTCCAAAACATCTGCTTTGAGCTTGTTAAGTTCTTCTGCTAGACGGCCTCAGTCCTGTTaGGTGGGGCAGACATCTGAG | + |
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Preference number: 4 (lower is better) Translates to: CLRSSKTSALSLLSSSARRPQSC*VGQTSE Trigger: CTCAGATGTCTGCCCCACCCAACAGGACTGAGGCCG...TCTAGCAGAAGAACTTAACAAGCTCAAAGCAGATGTTTTGGAAGATCTAAGACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000145114.8 |
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| CDS-3UTR TCA 90 bp | CCTCATCGTCTGAGAGACAGTTCTTCGGAGTGTCTCATCAGCTTTATGAAGGATTTTTTAAGCAGGTTATaGAGTCTTCCCACACGGCCT | + |
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Preference number: 4 (lower is better) Translates to: PHRLRDSSSECLISFMKDFLSRL*SLPTRP Trigger: AGGCCGTGTGGGAAGACTTCATAACCTGCTTAAAAA...ATCCTTCATAAAGCTGATGAGACACTCCGAAGAACTGTCTCTCAGACGATGAGG 46% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000145114.8 |
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| CDS-3UTR CCA 90 bp | TGTCTTAGATCTTCCAAAACATCTGCTTTGAGCTTGTTAAGTTCTTCTGCTAGACGCACAGTCCTAGTTTaGGCTGTCCGTCTCTGCGAG | + |
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Preference number: 4 (lower is better) Translates to: CLRSSKTSALSLLSSSARRTVLV*AVRLCE Trigger: CTCGCAGAGACGGACAGCCCAAACTAGGACTGTGCG...TCTAGCAGAAGAACTTAACAAGCTCAAAGCAGATGTTTTGGAAGATCTAAGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000145114.8 |
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| CDS-3UTR CCA 90 bp | CTTCAAGTTATTAAGAGGTATTTGTTCATCTTTGGCTTCCCTCATCGTCTGAGACGGAACATTTTCCACTaGGATGGCCGAGGCTGTGTG | + |
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Preference number: 4 (lower is better) Translates to: LQVIKRYLFIFGFPHRLRRNIFH*DGRGCV Trigger: CACACAGCCTCGGCCATCCCAGTGGAAAATGTTCCG...TCTCAGACGATGAGGGAAGCCAAAGATGAACAAATACCTCTTAATAACTTGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000145114.8 |
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| CDS-3UTR CCA 90 bp | CTTAGATCTTCCAAAACATCTGCTTTGAGCTTGTTAAGTTCTTCTGCTAGATGCCAGTCACCTCCAGGCTaGCTTCCAGAGAACATGCTG | + |
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Preference number: 4 (lower is better) Translates to: LRSSKTSALSLLSSSARCQSPPG*LPENML Trigger: CAGCATGTTCTCTGGAAGCCAGCCTGGAGGTGACTG...GCATCTAGCAGAAGAACTTAACAAGCTCAAAGCAGATGTTTTGGAAGATCTAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000128092.3 ENSMUST00000145114.8 |
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| CDS-3UTR CCA 90 bp | CCTTGTCTTAGATCTTCCAAAACATCTGCTTTGAGCTTGTTAAGTTCTTCTGCTCAGTCACCTCCAGGCTaGCTTCCAGAGAACATGCTG | + |
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Preference number: 4 (lower is better) Translates to: PCLRSSKTSALSLLSSSAQSPPG*LPENML Trigger: CAGCATGTTCTCTGGAAGCCAGCCTGGAGGTGACTG...AGCAGAAGAACTTAACAAGCTCAAAGCAGATGTTTTGGAAGATCTAAGACAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000128092.3 ENSMUST00000145114.8 |
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| CDS-3UTR TCA 90 bp | ATGAAAAGTCCTATGAGTGAGCTCCTCTTGCAGTCTCTTCCATGTCTCTCTCACGAACATGCTGAACTCTaGATTATGAGGCTGTTGTGT | + |
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Preference number: 4 (lower is better) Translates to: MKSPMSELLLQSLPCLSHEHAEL*IMRLLC Trigger: ACACAACAGCCTCATAATTCAGAGTTCAGCATGTTC...GTGAGAGAGACATGGAAGAGACTGCAAGAGGAGCTCACTCATAGGACTTTTCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207489.2 |
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| CDS-3UTR CCA 90 bp | TTTCCTTGTCTTAGATCTTCCAAAACATCTGCTTTGAGCTTGTTAAGTTCTTCTTCGTCAGGCAGTGGCTaGGACCTCTCACCATTCCTC | + |
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Preference number: 4 (lower is better) Translates to: FPCLRSSKTSALSLLSSSSSGSG*DLSPFL Trigger: GAGGAATGGTGAGAGGTCCCAGCCACTGCCTGACGA...AGAAGAACTTAACAAGCTCAAAGCAGATGTTTTGGAAGATCTAAGACAAGGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000128092.3 ENSMUST00000145114.8 |
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| CDS-3UTR CCA 90 bp | TTTCCTTGTCTTAGATCTTCCAAAACATCTGCTTTGAGCTTGTTAAGTTCTTCTGGTCTCGTCAGGCAGTaGCTGGGACCTCTCACCATT | + |
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Preference number: 4 (lower is better) Translates to: FPCLRSSKTSALSLLSSSGLVRQ*LGPLTI Trigger: AATGGTGAGAGGTCCCAGCCACTGCCTGACGAGACC...AGAAGAACTTAACAAGCTCAAAGCAGATGTTTTGGAAGATCTAAGACAAGGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000128092.3 ENSMUST00000145114.8 |
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| CDS-3UTR GCA 90 bp | CCTTGTCTTAGATCTTCCAAAACATCTGCTTTGAGCTTGTTAAGTTCTTCTGCTAGAAACAGCAGGTTTTaGCAAGAGGTGGCAAGGCTG | + |
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Preference number: 4 (lower is better) Translates to: PCLRSSKTSALSLLSSSARNSRF*QEVARL Trigger: CAGCCTTGCCACCTCTTGGCAAAACCTGCTGTTTCT...AGCAGAAGAACTTAACAAGCTCAAAGCAGATGTTTTGGAAGATCTAAGACAAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000145114.8 |
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| CDS-3UTR CCA 90 bp | TTTGTTCATCTTTGGCTTCCCTCATCGTCTGAGAGACAGTTCTTCGGAGTGTCTCAGTCTAAAAAGAGCTaGCAAAAGCCTAGCGAATAT | + |
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Preference number: 4 (lower is better) Translates to: FVHLWLPSSSERQFFGVSQSKKS*QKPSEY Trigger: ATATTCGCTAGGCTTTTGCCAGCTCTTTTTAGACTG...AGACACTCCGAAGAACTGTCTCTCAGACGATGAGGGAAGCCAAAGATGAACAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000145114.8 |
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| CDS-3UTR TCA 90 bp | TTTCCTTGTCTTAGATCTTCCAAAACATCTGCTTTGAGCTTGTTAAGTTCTTCTCTATCTTTCTCCCCATaGGCTGGATGGTCTCGTCAG | + |
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Preference number: 4 (lower is better) Translates to: FPCLRSSKTSALSLLSSSLSFSP*AGWSRQ Trigger: CTGACGAGACCATCCAGCTCATGGGGAGAAAGATAG...AGAAGAACTTAACAAGCTCAAAGCAGATGTTTTGGAAGATCTAAGACAAGGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000128092.3 ENSMUST00000145114.8 |
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| CDS-3UTR GCA 90 bp | GTTATTAAGAGGTATTTGTTCATCTTTGGCTTCCCTCATCGTCTGAGAGACAGTAGGAAGCATTCCAGGTaGTTTAACAGTTCTTGTCGG | + |
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Preference number: 4 (lower is better) Translates to: VIKRYLFIFGFPHRLRDSRKHSR*FNSSCR Trigger: CCGACAAGAACTGTTAAAGCACCTGGAATGCTTCCT...ACTGTCTCTCAGACGATGAGGGAAGCCAAAGATGAACAAATACCTCTTAATAAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000145114.8 |
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| CDS-3UTR CCA 90 bp | CTTAGATCTTCCAAAACATCTGCTTTGAGCTTGTTAAGTTCTTCTGCTAGATGCCTAAGAAAAGGTCTTTaGCTTCCCTCATCGTCTGAG | + |
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Preference number: 4 (lower is better) Translates to: LRSSKTSALSLLSSSARCLRKGL*LPSSSE Trigger: CTCAGACGATGAGGGAAGCCAAAGACCTTTTCTTAG...GCATCTAGCAGAAGAACTTAACAAGCTCAAAGCAGATGTTTTGGAAGATCTAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000133284.3 |
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| CDS-3UTR TCA 90 bp | TTTCCTTGTCTTAGATCTTCCAAAACATCTGCTTTGAGCTTGTTAAGTTCTTCTCTGAACTCTGAATTATaGGGCTGTTGTGTTCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: FPCLRSSKTSALSLLSSSLNSEL*GCCVPR Trigger: CCTGGGAACACAACAGCCTCATAATTCAGAGTTCAG...AGAAGAACTTAACAAGCTCAAAGCAGATGTTTTGGAAGATCTAAGACAAGGAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000128092.3 ENSMUST00000145114.8 |
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| CDS-3UTR TCA 90 bp | CCTTGTCTTAGATCTTCCAAAACATCTGCTTTGAGCTTGTTAAGTTCTTCTGCTGAACATGCTGAACTCTaGATTATGAGGCTGTTGTGT | + |
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Preference number: 4 (lower is better) Translates to: PCLRSSKTSALSLLSSSAEHAEL*IMRLLC Trigger: ACACAACAGCCTCATAATTCAGAGTTCAGCATGTTC...AGCAGAAGAACTTAACAAGCTCAAAGCAGATGTTTTGGAAGATCTAAGACAAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000128092.3 ENSMUST00000145114.8 |
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| CDS-3UTR TCA 90 bp | TCTTCCAAAACATCTGCTTTGAGCTTGTTAAGTTCTTCTGCTAGATGCTTCAAGGAACATGCTGAACTCTaGATTATGAGGCTGTTGTGT | + |
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Preference number: 4 (lower is better) Translates to: SSKTSALSLLSSSARCFKEHAEL*IMRLLC Trigger: ACACAACAGCCTCATAATTCAGAGTTCAGCATGTTC...CTTGAAGCATCTAGCAGAAGAACTTAACAAGCTCAAAGCAGATGTTTTGGAAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000145114.8 |
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| CDS-3UTR TCA 90 bp | CCTTGTCTTAGATCTTCCAAAACATCTGCTTTGAGCTTGTTAAGTTCTTCTGCTGTCTCATCAGCTTTATaGAGGATGTTAGTAGAACAG | + |
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Preference number: 4 (lower is better) Translates to: PCLRSSKTSALSLLSSSAVSSAL*RMLVEQ Trigger: CTGTTCTACTAACATCCTTCATAAAGCTGATGAGAC...AGCAGAAGAACTTAACAAGCTCAAAGCAGATGTTTTGGAAGATCTAAGACAAGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133284.3 |
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| CDS-3UTR CCA 90 bp | CCTTGTCTTAGATCTTCCAAAACATCTGCTTTGAGCTTGTTAAGTTCTTCTGCTCAGTCTAAAAAGAGCTaGCAAAAGCCTAGCGAATAT | + |
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Preference number: 4 (lower is better) Translates to: PCLRSSKTSALSLLSSSAQSKKS*QKPSEY Trigger: ATATTCGCTAGGCTTTTGCCAGCTCTTTTTAGACTG...AGCAGAAGAACTTAACAAGCTCAAAGCAGATGTTTTGGAAGATCTAAGACAAGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000128092.3 ENSMUST00000145114.8 |
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| 3UTR CAA 72 bp | CCTTGTCTTAGATCTTCCAAAACATCTGCTTTGAGCTaGTTAAGTTCTTCTGCTAGATGCTTCAAGTTATTA | + |
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Preference number: 4 (lower is better) Translates to: PCLRSSKTSALS*LSSSARCFKLL Trigger: TAATAACTTGAAGCATCTAGCAGAAGAACTTAACAAGCTCAAAGCAGATGTTTTGGAAGATCTAAGACAAGG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000133284.3 ENSMUST00000145114.8 |
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| CDS GCA 90 bp | CACGGCCCAACCCCGCTCCCGCCGCAGGCGGAGGGCCAGCGCACGTaGAAAAGTCGACTTTCCGGCCGCCGGCAAGCCGCAGAGGACGCA | + |
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Preference number: 5 (lower is better) Translates to: HGPTPLPPQAEGQRT*KSRLSGRRQAAEDA Trigger: TGCGTCCTCTGCGGCTTGCCGGCGGCCGGAAAGTCGACTTTTGCACGTGCGCTGGCCCTCCGCCTGCGGCGGGAGCGGGGTTGGGCCGTG 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000075610.13 ENSMUST00000141914.3 ENSMUST00000145114.8 |
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| CDS CCA 90 bp | ACTTTCCGGCCGCCGGCAAGCCGCAGAGGACGCACAGTCCTAGTTTaGGCTGTCCGTCTCTGCGAGTGGCCCCACGAGCCGCCGCGGTCT | + |
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Preference number: 5 (lower is better) Translates to: TFRPPASRRGRTVLV*AVRLCEWPHEPPRS Trigger: AGACCGCGGCGGCTCGTGGGGCCACTCGCAGAGACGGACAGCCCAAACTAGGACTGTGCGTCCTCTGCGGCTTGCCGGCGGCCGGAAAGT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000075610.13 ENSMUST00000141914.3 ENSMUST00000145114.8 |
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| CDS GCA 90 bp | ACAGTTCTTGTCGGAACATTTTCCACTGGGATGGCCGAGGCTGTGTaGCATCGCAGTCCGGGAGCGCAAGAGGCAGCACATCGTCGTAGG | + |
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Preference number: 5 (lower is better) Translates to: TVLVGTFSTGMAEAV*HRSPGAQEAAHRRR Trigger: CCTACGACGATGTGCTGCCTCTTGCGCTCCCGGACTGCGATGGCACACAGCCTCGGCCATCCCAGTGGAAAATGTTCCGACAAGAACTGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075610.13 ENSMUST00000145114.8 |
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| CDS TCA 90 bp | AAGTCTTCCCACACGGCCTCAGTCCTGTTGGGTGGGGCAGACATCTaGGCCCCACTAATGACCGCCACGAGGAAGCATTCCAGGTGCTTT | + |
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Preference number: 5 (lower is better) Translates to: KSSHTASVLLGGADI*APLMTATRKHSRCF Trigger: AAAGCACCTGGAATGCTTCCTCGTGGCGGTCATTAGTGGGGCTCAGATGTCTGCCCCACCCAACAGGACTGAGGCCGTGTGGGAAGACTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075610.13 ENSMUST00000145114.8 |
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| CDS-3UTR CAA 90 bp | AGCTCCTCTTGCAGTCTCTTCCATGTCTCTCTCACACAGGCGAGAAGCCTCACAGCATTTTTCTCAGGGTaGGGCTTCTCTATCTTTCTC | + |
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Preference number: 5 (lower is better) Translates to: SSSCSLFHVSLTQARSLTAFFSG*GFSIFL Trigger: GAGAAAGATAGAGAAGCCCAACCCTGAGAAAAATGC...TGTGAGGCTTCTCGCCTGTGTGAGAGAGACATGGAAGAGACTGCAAGAGGAGCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000207489.2 |
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| CDS TCA 90 bp | TGGCAAGGCTGGGCCTCTAGTGCTGTAGGAAAGATCATCAAATCCTaGCTTTTTAAGCAGGTTATGAAGTCTTCCCACACGGCCTCAGTC | + |
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Preference number: 5 (lower is better) Translates to: WQGWASSAVGKIIKS*LFKQVMKSSHTASV Trigger: GACTGAGGCCGTGTGGGAAGACTTCATAACCTGCTTAAAAAGTCAGGATTTGATGATCTTTCCTACAGCACTAGAGGCCCAGCCTTGCCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000075610.13 ENSMUST00000145114.8 |
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| CDS CCA 90 bp | AACACCAAAAACAAAGGTCTAGAAACAGCAGGTTTTGCCAAGAGGTaGCAAGGCTGGGCCTCTAGTGCTGTAGGAAAGATCATCAAATCC | + |
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Preference number: 5 (lower is better) Translates to: NTKNKGLETAGFAKR*QGWASSAVGKIIKS Trigger: GGATTTGATGATCTTTCCTACAGCACTAGAGGCCCAGCCTTGCCACCTCTTGGCAAAACCTGCTGTTTCTAGACCTTTGTTTTTGGTGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000075610.13 ENSMUST00000145114.8 |
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| CDS-3UTR CAA 90 bp | TTCCCTCATCGTCTGAGAGACAGTTCTTCGGAGTGTCTCATCAGCTTTATGAAGGCATTTTTCTCAGGGTaGGGCTTCTCTATCTTTCTC | + |
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Preference number: 5 (lower is better) Translates to: FPHRLRDSSSECLISFMKAFFSG*GFSIFL Trigger: GAGAAAGATAGAGAAGCCCAACCCTGAGAAAAATGC...CTTCATAAAGCTGATGAGACACTCCGAAGAACTGTCTCTCAGACGATGAGGGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000145114.8 |
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| CDS-3UTR CAA 90 bp | CCTCACAGGTGTCACTTATGTCCATTTGCATCTGCTTACGAGCGCCACCTGGAATCTGTCAGTTTCCTTTaGTTCTGTATTATCCTCAAC | + |
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Preference number: 5 (lower is better) Translates to: PHRCHLCPFASAYERHLESVSFL*FCIILN Trigger: GTTGAGGATAATACAGAACAAAAGGAAACTGACAGA...TTCCAGGTGGCGCTCGTAAGCAGATGCAAATGGACATAAGTGACACCTGTGAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207489.2 |
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| CDS CCA 90 bp | ATGTTCTGCTTCCTATTGATTCCCTCGTATCTAAGAAAAGGTCTTTaGCTTCCCTCATCGTCTGAGAGACAGTTCTTCGGAGTGTCTCAT | + |
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Preference number: 5 (lower is better) Translates to: MFCFLLIPSYLRKGL*LPSSSERQFFGVSH Trigger: ATGAGACACTCCGAAGAACTGTCTCTCAGACGATGAGGGAAGCCAAAGACCTTTTCTTAGATACGAGGGAATCAATAGGAAGCAGAACAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133284.3 |
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| CDS-3UTR CAA 90 bp | CTTAGATCTTCCAAAACATCTGCTTTGAGCTTGTTAAGTTCTTCTGCTAGATGCATATTTCCGAGCCAGTaGGTAGACTTCATATCTCAT | + |
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Preference number: 5 (lower is better) Translates to: LRSSKTSALSLLSSSARCIFPSQ*VDFISH Trigger: ATGAGATATGAAGTCTACCAACTGGCTCGGAAATAT...GCATCTAGCAGAAGAACTTAACAAGCTCAAAGCAGATGTTTTGGAAGATCTAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000128092.3 ENSMUST00000145114.8 |
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| CDS-3UTR CAA 90 bp | TCTTCCAAAACATCTGCTTTGAGCTTGTTAAGTTCTTCTGCTAGATGCTTCAAGATATTTCCGAGCCAGTaGGTAGACTTCATATCTCAT | + |
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Preference number: 5 (lower is better) Translates to: SSKTSALSLLSSSARCFKIFPSQ*VDFISH Trigger: ATGAGATATGAAGTCTACCAACTGGCTCGGAAATAT...CTTGAAGCATCTAGCAGAAGAACTTAACAAGCTCAAAGCAGATGTTTTGGAAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000145114.8 |
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| CDS-3UTR CAA 90 bp | TTTCCTTGTCTTAGATCTTCCAAAACATCTGCTTTGAGCTTGTTAAGTTCTTCTGCATTTTTCTCAGGGTaGGGCTTCTCTATCTTTCTC | + |
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Preference number: 5 (lower is better) Translates to: FPCLRSSKTSALSLLSSSAFFSG*GFSIFL Trigger: GAGAAAGATAGAGAAGCCCAACCCTGAGAAAAATGC...AGAAGAACTTAACAAGCTCAAAGCAGATGTTTTGGAAGATCTAAGACAAGGAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000128092.3 ENSMUST00000145114.8 |
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| CDS CAA 90 bp | GACTTTCCGGCCGCCGGCAAGCCGCAGAGGACGCACAGTCCTAGTTaGGGCTGTCCGTCTCTGCGAGTGGCCCCACGAGCCGCCGCGGTC | + |
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Preference number: 6 (lower is better) Translates to: DFPAAGKPQRTHSPS*GCPSLRVAPRAAAV Trigger: GACCGCGGCGGCTCGTGGGGCCACTCGCAGAGACGGACAGCCCAAACTAGGACTGTGCGTCCTCTGCGGCTTGCCGGCGGCCGGAAAGTC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000075610.13 ENSMUST00000141914.3 ENSMUST00000145114.8 |
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| CDS CCA 72 bp | CCGCCGGCAAGCCGCAGAGGACGCACAGTCCTAGTTTaGGCTGTCCGTCTCTGCGAGTGGCCCCACGAGCCG | + |
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Preference number: 6 (lower is better) Translates to: PPASRRGRTVLV*AVRLCEWPHEP Trigger: CGGCTCGTGGGGCCACTCGCAGAGACGGACAGCCCAAACTAGGACTGTGCGTCCTCTGCGGCTTGCCGGCGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000075610.13 ENSMUST00000141914.3 ENSMUST00000145114.8 |
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| CDS CAA 72 bp | GCCGCCGGCAAGCCGCAGAGGACGCACAGTCCTAGTTaGGGCTGTCCGTCTCTGCGAGTGGCCCCACGAGCC | + |
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Preference number: 6 (lower is better) Translates to: AAGKPQRTHSPS*GCPSLRVAPRA Trigger: GGCTCGTGGGGCCACTCGCAGAGACGGACAGCCCAAACTAGGACTGTGCGTCCTCTGCGGCTTGCCGGCGGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000075610.13 ENSMUST00000141914.3 ENSMUST00000145114.8 |
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| CDS TCA 72 bp | CACACGGCCTCAGTCCTGTTGGGTGGGGCAGACATCTaGGCCCCACTAATGACCGCCACGAGGAAGCATTCC | + |
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Preference number: 6 (lower is better) Translates to: HTASVLLGGADI*APLMTATRKHS Trigger: GGAATGCTTCCTCGTGGCGGTCATTAGTGGGGCTCAGATGTCTGCCCCACCCAACAGGACTGAGGCCGTGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075610.13 ENSMUST00000145114.8 |
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| CDS GCA 72 bp | GTCGGAACATTTTCCACTGGGATGGCCGAGGCTGTGTaGCATCGCAGTCCGGGAGCGCAAGAGGCAGCACAT | + |
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Preference number: 6 (lower is better) Translates to: VGTFSTGMAEAV*HRSPGAQEAAH Trigger: ATGTGCTGCCTCTTGCGCTCCCGGACTGCGATGGCACACAGCCTCGGCCATCCCAGTGGAAAATGTTCCGAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075610.13 ENSMUST00000145114.8 |
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| CDS CCA 72 bp | CTAGAAACAGCAGGTTTTGCCAAGAGGTGGCAAGGCTaGGCCTCTAGTGCTGTAGGAAAGATCATCAAATCC | + |
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Preference number: 6 (lower is better) Translates to: LETAGFAKRWQG*ASSAVGKIIKS Trigger: GGATTTGATGATCTTTCCTACAGCACTAGAGGCCCAGCCTTGCCACCTCTTGGCAAAACCTGCTGTTTCTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075610.13 ENSMUST00000145114.8 |
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| CDS TCA 72 bp | GTATCTAAGAAAAGGTCTTTGGCTTCCCTCATCGTCTaGGAGACAGTTCTTCGGAGTGTCTCATCAGCTTTA | + |
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Preference number: 6 (lower is better) Translates to: VSKKRSLASLIV*ETVLRSVSSAL Trigger: TAAAGCTGATGAGACACTCCGAAGAACTGTCTCTCAGACGATGAGGGAAGCCAAAGACCTTTTCTTAGATAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133284.3 |
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| CDS CCA 72 bp | TTCCTATTGATTCCCTCGTATCTAAGAAAAGGTCTTTaGCTTCCCTCATCGTCTGAGAGACAGTTCTTCGGA | + |
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Preference number: 6 (lower is better) Translates to: FLLIPSYLRKGL*LPSSSERQFFG Trigger: TCCGAAGAACTGTCTCTCAGACGATGAGGGAAGCCAAAGACCTTTTCTTAGATACGAGGGAATCAATAGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133284.3 |
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