Pregenerated sensors for PSPN (Mus musculus)

Ensembl gene IDs: ENSMUSG00000002664

Ensembl transcript IDs: ENSMUST00000002740.3

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	TGGGCTCGACCCCGCCCTCGAAGCCGGGCCAGTACCAGACTGTGCTaGGTATGGGCCTCTTGGGGACAGCTGCCAGCACAGTATCGGAAG	+
Preference number: 5 (lower is better) Translates to: WARPRPRSRASTRLC*VWASWGQLPAQYRK Trigger: CTTCCGATACTGTGCTGGCAGCTGTCCCCAAGAGGCCCATACCCAGCACAGTCTGGTACTGGCCCGGCTTCGAGGGCGGGGTCGAGCCCA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002740.3
CDS CCA 90 bp	CGACCCCGCCCTCGAAGCCGGGCCAGTACCAGACTGTGCTGGGTATaGGCCTCTTGGGGACAGCTGCCAGCACAGTATCGGAAGATGACC	+
Preference number: 5 (lower is better) Translates to: RPRPRSRASTRLCWV*ASWGQLPAQYRKMT Trigger: GGTCATCTTCCGATACTGTGCTGGCAGCTGTCCCCAAGAGGCCCATACCCAGCACAGTCTGGTACTGGCCCGGCTTCGAGGGCGGGGTCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002740.3
CDS TCA 90 bp	TCTGCCATCTTCCCAAATGAGAGCTTATCTGCCACAGAAGCCTCTTaGAGATCAAGGACCCAGCCGAGGCTCGGGTGCAAGGACAGGAGC	+
Preference number: 5 (lower is better) Translates to: SAIFPNESLSATEAS*RSRTQPRLGCKDRS Trigger: GCTCCTGTCCTTGCACCCGAGCCTCGGCTGGGTCCTTGATCTTCAAGAGGCTTCTGTGGCAGATAAGCTCTCATTTGGGAAGATGGCAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002740.3
CDS CCA 72 bp	CCTCGAAGCCGGGCCAGTACCAGACTGTGCTGGGTATaGGCCTCTTGGGGACAGCTGCCAGCACAGTATCGG	+
Preference number: 6 (lower is better) Translates to: PRSRASTRLCWV*ASWGQLPAQYR Trigger: CCGATACTGTGCTGGCAGCTGTCCCCAAGAGGCCCATACCCAGCACAGTCTGGTACTGGCCCGGCTTCGAGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002740.3
CDS CCA 72 bp	GCTGATCATCAAGGAAGGTCACATCAGCATAGCTGGTaGGCTGGCAGCAGGGTCGGCCATGGGCTCGACCCC	+
Preference number: 6 (lower is better) Translates to: ADHQGRSHQHSW*AGSRVGHGLDP Trigger: GGGGTCGAGCCCATGGCCGACCCTGCTGCCAGCCCACCAGCTATGCTGATGTGACCTTCCTTGATGATCAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002740.3
CDS CAA 90 bp	CTGGTAGGGTCAGGCTCCACAGTCGGCATGAACCAGCCAAGGCTCTaGGAAGACGGACATGGTTGTTACCCTGATGGGGCGTCCAGGTCC	+
Preference number: 6 (lower is better) Translates to: LVGSGSTVGMNQPRL*EDGHGCYPDGASRS Trigger: GGACCTGGACGCCCCATCAGGGTAACAACCATGTCCGTCTTCCAAGAGCCTTGGCTGGTTCATGCCGACTGTGGAGCCTGACCCTACCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002740.3
CDS CAA 72 bp	TCAGGCTCCACAGTCGGCATGAACCAGCCAAGGCTCTaGGAAGACGGACATGGTTGTTACCCTGATGGGGCG	+
Preference number: 6 (lower is better) Translates to: SGSTVGMNQPRL*EDGHGCYPDGA Trigger: CGCCCCATCAGGGTAACAACCATGTCCGTCTTCCAAGAGCCTTGGCTGGTTCATGCCGACTGTGGAGCCTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002740.3

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu