Pregenerated sensors for PSPH (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029446

Ensembl transcript IDs: ENSMUST00000031399.13, ENSMUST00000118268.9, ENSMUST00000136507.4, ENSMUST00000201394.4

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	CAGGAGCCTAACTGTGTGGCTTTGAGAAGGTGGAGTTGTTCTGAGTaGGCGGGAAGTCAAGCTCACTCCTCCAGTTCTCCCAGCAGCTCC	+
Preference number: 1 (lower is better) Translates to: QEPNCVALRRWSCSE*AGSQAHSSSSPSSS Trigger: GGAGCTGCTGGGAGAACTGGAGGAGTGAGCTTGACTTCCCGCTCACTCAGAACAACTCCACCTTCTCAAAGCCACACAGTTAGGCTCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118268.9
3UTR TCA 72 bp	AACTGTGTGGCTTTGAGAAGGTGGAGTTGTTCTGAGTaGGCGGGAAGTCAAGCTCACTCCTCCAGTTCTCCC	+
Preference number: 3 (lower is better) Translates to: NCVALRRWSCSE*AGSQAHSSSSP Trigger: GGGAGAACTGGAGGAGTGAGCTTGACTTCCCGCTCACTCAGAACAACTCCACCTTCTCAAAGCCACACAGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118268.9
CDS GCA 90 bp	AAAAGGCAATGCTCCTCCCATGGCTCTCCGTGTCATTTCAGACACTaGGGCCTCCACACCACAGAATTTGGCCAGCTCATCGATTCCTTC	+
Preference number: 5 (lower is better) Translates to: KRQCSSHGSPCHFRH*GLHTTEFGQLIDSF Trigger: GAAGGAATCGATGAGCTGGCCAAATTCTGTGGTGTGGAGGCCGCAGTGTCTGAAATGACACGGAGAGCCATGGGAGGAGCATTGCCTTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000031399.13 ENSMUST00000118268.9 ENSMUST00000136507.4 ENSMUST00000201394.4
CDS GCA 72 bp	GAGCCTCTGGACTTGATCCCTGGAGGGCTGGATCAGTaGCAGGCGCTGAGTGAGCGCGTCTTTAAAAGGCAA	+
Preference number: 6 (lower is better) Translates to: EPLDLIPGGLDQ*QALSERVFKRQ Trigger: TTGCCTTTTAAAGACGCGCTCACTCAGCGCCTGGCACTGATCCAGCCCTCCAGGGATCAAGTCCAGAGGCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031399.13 ENSMUST00000118268.9 ENSMUST00000201394.4
CDS GCA 72 bp	TGCTCCTCCCATGGCTCTCCGTGTCATTTCAGACACTaGGGCCTCCACACCACAGAATTTGGCCAGCTCATC	+
Preference number: 6 (lower is better) Translates to: CSSHGSPCHFRH*GLHTTEFGQLI Trigger: GATGAGCTGGCCAAATTCTGTGGTGTGGAGGCCGCAGTGTCTGAAATGACACGGAGAGCCATGGGAGGAGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000031399.13 ENSMUST00000118268.9 ENSMUST00000136507.4 ENSMUST00000201394.4
CDS GCA 72 bp	TGCCAGGCGCTGAGTGAGCGCGTCTTTAAAAGGCAATaGTCCTCCCATGGCTCTCCGTGTCATTTCAGACAC	+
Preference number: 6 (lower is better) Translates to: CQALSERVFKRQ*SSHGSPCHFRH Trigger: GTGTCTGAAATGACACGGAGAGCCATGGGAGGAGCATTGCCTTTTAAAGACGCGCTCACTCAGCGCCTGGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031399.13 ENSMUST00000118268.9 ENSMUST00000201394.4
CDS GCA 72 bp	ATAACCTTTCCTTTCCCACCCGACTCGGCTGTCGGCTaGATCTCATCAAAACCTGCGTACTCACCATTAAAG	+
Preference number: 6 (lower is better) Translates to: ITFPFPPDSAVG*ISSKPAYSPLK Trigger: CTTTAATGGTGAGTACGCAGGTTTTGATGAGATGCAGCCGACAGCCGAGTCGGGTGGGAAAGGAAAGGTTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031399.13
CDS CAA 72 bp	TTCAGCCTATTGGCAAACACATTGGTTGTTGGGATATaGAGCTTTGCAGCAACGTGCTCCACAATGCTCCGA	+
Preference number: 6 (lower is better) Translates to: FSLLANTLVVGI*SFAATCSTMLR Trigger: TCGGAGCATTGTGGAGCACGTTGCTGCAAAGCTCAATATCCCAACAACCAATGTGTTTGCCAATAGGCTGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031399.13

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