Pregenerated sensors for PSPC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021938Ensembl transcript IDs: ENSMUST00000022507.13, ENSMUST00000163924.2, ENSMUST00000168575.2
Found 91 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GTGACGGATCATTTCTTCTTCACGACGACGATGCTCTTCTTCGTGTCTCAGTTGTCAAATGTCCCAGGTTaGGCAAACCGTGGTGGCTGT | + |
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Preference number: 2 (lower is better) Translates to: VTDHFFFTTTMLFFVSQLSNVPG*ANRGGC Trigger: ACAGCCACCACGGTTTGCTCAACCTGGGACATTTGA...CAACTGAGACACGAAGAAGAGCATCGTCGTCGTGAAGAAGAAATGATCCGTCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168575.2 |
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| 3UTR-3UTR TCA 90 bp | GGAAATGTTAGGAGAGAAAACACCTGCCACGATCATGGGTTGGGCAACTGGATACAGACCTTACCAGGCTaGGGAAAAAGGGAGAATGAG | + |
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Preference number: 2 (lower is better) Translates to: GNVRRENTCHDHGLGNWIQTLPG*GKRENE Trigger: CTCATTCTCCCTTTTTCCTCAGCCTGGTAAGGTCTG...TATCCAGTTGCCCAACCCATGATCGTGGCAGGTGTTTTCTCTCCTAACATTTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
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| 3UTR-3UTR TCA 90 bp | GACTGTCCCTCAGAGGCTGACTTCTCTCAGAGAAACCTTGGTAAGCACTGGAACAGACTTCTGATCGACTaGAGTCATCTTTCCCAATTA | + |
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Preference number: 2 (lower is better) Translates to: DCPSEADFSQRNLGKHWNRLLID*SHLSQL Trigger: TAATTGGGAAAGATGACTTCAGTCGATCAGAAGTCT...GTTCCAGTGCTTACCAAGGTTTCTCTGAGAGAAGTCAGCCTCTGAGGGACAGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
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| 3UTR-3UTR CCA 90 bp | GGAAATGTTAGGAGAGAAAACACCTGCCACGATCATGGGTTGGGCAACTGGATAAACACTCTGTCGGTATaGCTGGTTGGGTTAAAGCTT | + |
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Preference number: 2 (lower is better) Translates to: GNVRRENTCHDHGLGNWINTLSV*LVGLKL Trigger: AAGCTTTAACCCAACCAGCCATACCGACAGAGTGTT...TATCCAGTTGCCCAACCCATGATCGTGGCAGGTGTTTTCTCTCCTAACATTTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
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| 3UTR-3UTR TCA 90 bp | ACTGTATTTCCAAGAAGGATGTGTCACAGACCTTACCAGGCTGAGGAAAAAGGGCTTTCACTAACAGTCTaGCTTAAGGGCTACAGGAAC | + |
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Preference number: 2 (lower is better) Translates to: TVFPRRMCHRPYQAEEKGLSLTV*LKGYRN Trigger: GTTCCTGTAGCCCTTAAGTCAGACTGTTAGTGAAAG...CCCTTTTTCCTCAGCCTGGTAAGGTCTGTGACACATCCTTCTTGGAAATACAGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
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| 3UTR-3UTR TCA 90 bp | GGAAATGTTAGGAGAGAAAACACCTGCCACGATCATGGGTTGGGCAACTGGATATGGCATCACTTTCTCTaGGGAACTAAAAAGGAAAGT | + |
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Preference number: 2 (lower is better) Translates to: GNVRRENTCHDHGLGNWIWHHFL*GTKKES Trigger: ACTTTCCTTTTTAGTTCCTCAGAGAAAGTGATGCCA...TATCCAGTTGCCCAACCCATGATCGTGGCAGGTGTTTTCTCTCCTAACATTTCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
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| 3UTR-3UTR TCA 90 bp | GTGACGGATCATTTCTTCTTCACGACGACGATGCTCTTCTTCGTGTCTCAGTTGTCCTTATGGTACTGTTaGGTTTTCTGCATTAGCTTC | + |
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Preference number: 2 (lower is better) Translates to: VTDHFFFTTTMLFFVSQLSLWYC*VFCISF Trigger: GAAGCTAATGCAGAAAACTCAACAGTACCATAAGGA...CAACTGAGACACGAAGAAGAGCATCGTCGTCGTGAAGAAGAAATGATCCGTCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168575.2 |
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| 3UTR-3UTR GCA 90 bp | GTGACGGATCATTTCTTCTTCACGACGACGATGCTCTTCTTCGTGTCTCAGTTGCGTCTCATTAGATCTTaGCTCATTAGCATTAACTGG | + |
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Preference number: 2 (lower is better) Translates to: VTDHFFFTTTMLFFVSQLRLIRS*LISINW Trigger: CCAGTTAATGCTAATGAGGCAAGATCTAATGAGACG...CAACTGAGACACGAAGAAGAGCATCGTCGTCGTGAAGAAGAAATGATCCGTCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168575.2 |
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| 3UTR-3UTR CCA 90 bp | AGACTGCTAACTTTTAGGACGGTAATCCCAAAACCAAACAGCCTTTGTGAAATCTTGCTTTCTCTTCACTaGCTGTACATCCATACTACC | + |
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Preference number: 2 (lower is better) Translates to: RLLTFRTVIPKPNSLCEILLSLH*LYIHTT Trigger: GGTAGTATGGATGTACAGCCAGTGAAGAGAAAGCAA...GATTTCACAAAGGCTGTTTGGTTTTGGGATTACCGTCCTAAAAGTTAGCAGTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163924.2 |
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| 3UTR CAA 90 bp | ATACATGGAAATGTTAGGAGAGAAAACACCTGCCACGATCATGGGTaGGGCAACTGGATATTCAAATACGAGACCCCATATACTTATATA | + |
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Preference number: 2 (lower is better) Translates to: IHGNVRRENTCHDHG*GNWIFKYETPYTYI Trigger: TATATAAGTATATGGGGTCTCGTATTTGAATATCCAGTTGCCCAACCCATGATCGTGGCAGGTGTTTTCTCTCCTAACATTTCCATGTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
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| 3UTR-3UTR GCA 90 bp | GATATCAAGAAGACCAGTGTATTACTCTTCAGTTCTACAATGAACGATGCCTTCTACATTAACTGCCAGTaGATTTCCTCCTTAGCCAGT | + |
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Preference number: 2 (lower is better) Translates to: DIKKTSVLLFSSTMNDAFYINCQ*ISSLAS Trigger: ACTGGCTAAGGAGGAAATGCACTGGCAGTTAATGTA...GAAGGCATCGTTCATTGTAGAACTGAAGAGTAATACACTGGTCTTCTTGATATC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163924.2 |
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| 3UTR-3UTR TCA 90 bp | AGCAACAACTCTAACTTACACAGGATCTATGGTTTATACAATCTTAACCCCCATTTTCAACATTCACAATaGTGGGCATCTTTTTCACCA | + |
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Preference number: 2 (lower is better) Translates to: SNNSNLHRIYGLYNLNPHFQHSQ*WASFSP Trigger: TGGTGAAAAAGATGCCCATCATTGTGAATGTTGAAA...ATGGGGGTTAAGATTGTATAAACCATAGATCCTGTGTAAGTTAGAGTTGTTGCT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
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| 3UTR-3UTR CAA 90 bp | GTGACGGATCATTTCTTCTTCACGACGACGATGCTCTTCTTCGTGTCTCAGTTGTTCAAATGTCCCAGGTaGAGCAAACCGTGGTGGCTG | + |
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Preference number: 3 (lower is better) Translates to: VTDHFFFTTTMLFFVSQLFKCPR*SKPWWL Trigger: CAGCCACCACGGTTTGCTCAACCTGGGACATTTGAA...CAACTGAGACACGAAGAAGAGCATCGTCGTCGTGAAGAAGAAATGATCCGTCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168575.2 |
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| 3UTR TCA 72 bp | GCACTGCAGAGAACTGTAGTGAGACGTGCGCTCTATTaGGGAAGAAGAATAAGTGGGGATGGCAATACTAAG | + |
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Preference number: 3 (lower is better) Translates to: ALQRTVVRRALY*GRRISGDGNTK Trigger: CTTAGTATTGCCATCCCCACTTATTCTTCTTCCTCAATAGAGCGCACGTCTCACTACAGTTCTCTGCAGTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163924.2 |
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| 3UTR TCA 72 bp | ATTTCCAAGAAGGATGTGTCACAGACCTTACCAGGCTaGGGAAAAAGGGAGAATGAGCGTTTGAACGGATAT | + |
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Preference number: 3 (lower is better) Translates to: ISKKDVSQTLPG*GKRENERLNGY Trigger: ATATCCGTTCAAACGCTCATTCTCCCTTTTTCCTCAGCCTGGTAAGGTCTGTGACACATCCTTCTTGGAAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
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| 3UTR GCA 72 bp | CCAGGCAGAAAAACAAACAAAATCTACTGCAATGTGTaGTGCTCTTCAGAGAGGTGTTCTGTAAGAGGACGA | + |
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Preference number: 3 (lower is better) Translates to: PGRKTNKIYCNV*CSSERCSVRGR Trigger: TCGTCCTCTTACAGAACACCTCTCTGAAGAGCAGCACACATTGCAGTAGATTTTGTTTGTTTTTCTGCCTGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
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| 3UTR-3UTR CAA 90 bp | ACTGTATTTCCAAGAAGGATGTGTCACAGACCTTACCAGGCTGAGGAAAAAGGGAGTATGTGTCCCTTATaGACATCAGCTTTCACTAAC | + |
|
Preference number: 3 (lower is better) Translates to: TVFPRRMCHRPYQAEEKGSMCPL*TSAFTN Trigger: GTTAGTGAAAGCTGATGTCAATAAGGGACACATACT...CCCTTTTTCCTCAGCCTGGTAAGGTCTGTGACACATCCTTCTTGGAAATACAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
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| 3UTR TCA 72 bp | CCTTACCAGGCTGAGGAAAAAGGGAGAATGAGCGTTTaGACGGATATTCCTCAAAAACGAACAGTACTAACA | + |
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Preference number: 3 (lower is better) Translates to: PYQAEEKGRMSV*TDIPQKRTVLT Trigger: TGTTAGTACTGTTCGTTTTTGAGGAATATCCGTTCAAACGCTCATTCTCCCTTTTTCCTCAGCCTGGTAAGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
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| 3UTR TCA 72 bp | AACCGTGGTGGCTGTTCTCTTTCCTTATGGTACTGTTaGGTTTTCTGCATTAGCTTCTCTGGTAAACCATCT | + |
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Preference number: 3 (lower is better) Translates to: NRGGCSLSLWYC*VFCISFSGKPS Trigger: AGATGGTTTACCAGAGAAGCTAATGCAGAAAACTCAACAGTACCATAAGGAAAGAGAACAGCCACCACGGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168575.2 |
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| 3UTR GCA 72 bp | GGCAGAAAAACAAACAAAATCTACTGCAATGTGTGCTaGTCTTCAGAGAGGTGTTCTGTAAGAGGACGATGT | + |
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Preference number: 3 (lower is better) Translates to: GRKTNKIYCNVC*SSERCSVRGRC Trigger: ACATCGTCCTCTTACAGAACACCTCTCTGAAGAGCAGCACACATTGCAGTAGATTTTGTTTGTTTTTCTGCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
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| 3UTR GCA 72 bp | GACCAGTGTATTACTCTTCAGTTCTACAATGAACGATaGCTTCCTTTTAATCTCTCTCTGATCCCAATGGAT | + |
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Preference number: 3 (lower is better) Translates to: DQCITLQFYNER*LPFNLSLIPMD Trigger: ATCCATTGGGATCAGAGAGAGATTAAAAGGAAGGCATCGTTCATTGTAGAACTGAAGAGTAATACACTGGTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163924.2 |
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| 3UTR-3UTR CAA 90 bp | AGAGTTCTGTTTCTAAGGGTAAAGAGTCTACACAGAAAAAGCGCAATCATAAACAGTGTGAAGTTATCTTaGAGGCAGCAAAATGCTTAT | + |
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Preference number: 3 (lower is better) Translates to: RVLFLRVKSLHRKSAIINSVKLS*RQQNAY Trigger: ATAAGCATTTTGCTGCCTCAAAGATAACTTCACACT...GTTTATGATTGCGCTTTTTCTGTGTAGACTCTTTACCCTTAGAAACAGAACTCT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000163924.2 |
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| 3UTR CCA 72 bp | GGATATTCCTCAAAAACGAACAGTACTAACATTACATaGGAGTTACTGGACAGACTTAACAAAATGGAAATA | + |
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Preference number: 3 (lower is better) Translates to: GYSSKTNSTNIT*ELLDRLNKMEI Trigger: TATTTCCATTTTGTTAAGTCTGTCCAGTAACTCCCATGTAATGTTAGTACTGTTCGTTTTTGAGGAATATCC 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
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| CDS-3UTR GCA 90 bp | AACCAGGCAGAAAAACAAACAAAATCTACTGCAATGTGTGCTGCTCTTCAGAGAGTGCTCCTCGGAAGGTaGGGGTGGCGGCGCCTGCTC | + |
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Preference number: 4 (lower is better) Translates to: NQAEKQTKSTAMCAALQRVLLGR*GWRRLL Trigger: GAGCAGGCGCCGCCACCCGCACCTTCCGAGGAGCAC...TCTCTGAAGAGCAGCACACATTGCAGTAGATTTTGTTTGTTTTTCTGCCTGGTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
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| CDS-3UTR GCA 90 bp | TCCACACACAGTAGAGTTCTGTTTCTAAGGGTAAAGAGTCTACACAGAAAAAGCGTGCTCCTCGGAAGGTaGGGGTGGCGGCGCCTGCTC | + |
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Preference number: 4 (lower is better) Translates to: STHSRVLFLRVKSLHRKSVLLGR*GWRRLL Trigger: GAGCAGGCGCCGCCACCCGCACCTTCCGAGGAGCAC...GCTTTTTCTGTGTAGACTCTTTACCCTTAGAAACAGAACTCTACTGTGTGTGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000163924.2 |
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| CDS-3UTR CCA 90 bp | GATATCAAGAAGACCAGTGTATTACTCTTCAGTTCTACAATGAACGATGCCTTCCCAGCGTCAGCGCCATaGCCGCCGCGGCCACCGGTT | + |
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Preference number: 4 (lower is better) Translates to: DIKKTSVLLFSSTMNDAFPASAP*PPRPPV Trigger: AACCGGTGGCCGCGGCGGCCATGGCGCTGACGCTGG...GAAGGCATCGTTCATTGTAGAACTGAAGAGTAATACACTGGTCTTCTTGATATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163924.2 |
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| CDS-3UTR CCA 90 bp | AGCAACAACTCTAACTTACACAGGATCTATGGTTTATACAATCTTAACCCCCATCCAGCGTCAGCGCCATaGCCGCCGCGGCCACCGGTT | + |
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Preference number: 4 (lower is better) Translates to: SNNSNLHRIYGLYNLNPHPASAP*PPRPPV Trigger: AACCGGTGGCCGCGGCGGCCATGGCGCTGACGCTGG...ATGGGGGTTAAGATTGTATAAACCATAGATCCTGTGTAAGTTAGAGTTGTTGCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
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| CDS-3UTR TCA 90 bp | GGAAATGTTAGGAGAGAAAACACCTGCCACGATCATGGGTTGGGCAACTGGATACCGGAGAAAGGTTCTTaGCCGTTAGGGCTGCTCCAT | + |
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Preference number: 4 (lower is better) Translates to: GNVRRENTCHDHGLGNWIPEKGS*PLGLLH Trigger: ATGGAGCAGCCCTAACGGTCAAGAACCTTTCTCCGG...TATCCAGTTGCCCAACCCATGATCGTGGCAGGTGTTTTCTCTCCTAACATTTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
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| CDS-3UTR TCA 90 bp | GACTGTCCCTCAGAGGCTGACTTCTCTCAGAGAAACCTTGGTAAGCACTGGAACTCCTCCTGCTCTCTGTaGCGGATCATTTCTTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: DCPSEADFSQRNLGKHWNSSCSL*RIISSS Trigger: TGAAGAAGAAATGATCCGTCACAGAGAGCAGGAGGA...GTTCCAGTGCTTACCAAGGTTTCTCTGAGAGAAGTCAGCCTCTGAGGGACAGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
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| CDS-3UTR GCA 90 bp | TTTCTCTTCACTGGCTGTACATCCATACTACCAAAGGAAATGACACCACGTTATAAGAGGCGGCAGCGCTaGGTGTACGTCTTCTCGCCC | + |
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Preference number: 4 (lower is better) Translates to: FLFTGCTSILPKEMTPRYKRRQR*VYVFSP Trigger: GGGCGAGAAGACGTACACGCAGCGCTGCCGCCTCTT...ATAACGTGGTGTCATTTCCTTTGGTAGTATGGATGTACAGCCAGTGAAGAGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163924.2 |
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| CDS-3UTR CCA 90 bp | GACTGTCCCTCAGAGGCTGACTTCTCTCAGAGAAACCTTGGTAAGCACTGGAACGTCTGCTCTTCAGTATaGTGCCATCCAACTCTGCTT | + |
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Preference number: 4 (lower is better) Translates to: DCPSEADFSQRNLGKHWNVCSSV*CHPTLL Trigger: AAGCAGAGTTGGATGGCACCATACTGAAGAGCAGAC...GTTCCAGTGCTTACCAAGGTTTCTCTGAGAGAAGTCAGCCTCTGAGGGACAGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
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| CDS-3UTR GCA 90 bp | ACTGTATTTCCAAGAAGGATGTGTCACAGACCTTACCAGGCTGAGGAAAAAGGGCTCCAGAGCCTTTCGTaGAGGAGGTTTCGCTGCAAA | + |
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Preference number: 4 (lower is better) Translates to: TVFPRRMCHRPYQAEEKGLQSLS*RRFRCK Trigger: TTTGCAGCGAAACCTCCTGCACGAAAGGCTCTGGAG...CCCTTTTTCCTCAGCCTGGTAAGGTCTGTGACACATCCTTCTTGGAAATACAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
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| CDS-3UTR GCA 90 bp | AGCAACAACTCTAACTTACACAGGATCTATGGTTTATACAATCTTAACCCCCATAAGAGGCGGCAGCGCTaGGTGTACGTCTTCTCGCCC | + |
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Preference number: 4 (lower is better) Translates to: SNNSNLHRIYGLYNLNPHKRRQR*VYVFSP Trigger: GGGCGAGAAGACGTACACGCAGCGCTGCCGCCTCTT...ATGGGGGTTAAGATTGTATAAACCATAGATCCTGTGTAAGTTAGAGTTGTTGCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
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| CDS-3UTR CCA 90 bp | ACTGTATTTCCAAGAAGGATGTGTCACAGACCTTACCAGGCTGAGGAAAAAGGGTGGGATGGAGGTCCTTaGGGAAACCTATCATTGTGC | + |
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Preference number: 4 (lower is better) Translates to: TVFPRRMCHRPYQAEEKGWDGGP*GNLSLC Trigger: GCACAATGATAGGTTTCCCCAAGGACCTCCATCCCA...CCCTTTTTCCTCAGCCTGGTAAGGTCTGTGACACATCCTTCTTGGAAATACAGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
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| CDS-3UTR TCA 90 bp | TCCACACACAGTAGAGTTCTGTTTCTAAGGGTAAAGAGTCTACACAGAAAAAGCCCGGAGAAAGGTTCTTaGCCGTTAGGGCTGCTCCAT | + |
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Preference number: 4 (lower is better) Translates to: STHSRVLFLRVKSLHRKSPEKGS*PLGLLH Trigger: ATGGAGCAGCCCTAACGGTCAAGAACCTTTCTCCGG...GCTTTTTCTGTGTAGACTCTTTACCCTTAGAAACAGAACTCTACTGTGTGTGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000163924.2 |
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| CDS-3UTR GCA 90 bp | AGCAACAACTCTAACTTACACAGGATCTATGGTTTATACAATCTTAACCCCCATAATTCCTCGTCCGGGTaGTCCTCGGAAGGTGCGGGT | + |
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Preference number: 4 (lower is better) Translates to: SNNSNLHRIYGLYNLNPHNSSSG*SSEGAG Trigger: ACCCGCACCTTCCGAGGAGCACCCGGACGAGGAATT...ATGGGGGTTAAGATTGTATAAACCATAGATCCTGTGTAAGTTAGAGTTGTTGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
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| CDS-3UTR TCA 90 bp | AACCAGGCAGAAAAACAAACAAAATCTACTGCAATGTGTGCTGCTCTTCAGAGATCAAATGTCCCAGGTTaGGCAAACCGTGGTGGCTGT | + |
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Preference number: 4 (lower is better) Translates to: NQAEKQTKSTAMCAALQRSNVPG*ANRGGC Trigger: ACAGCCACCACGGTTTGCTCAACCTGGGACATTTGA...TCTCTGAAGAGCAGCACACATTGCAGTAGATTTTGTTTGTTTTTCTGCCTGGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
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| CDS-3UTR GCA 90 bp | AGACTGCTAACTTTTAGGACGGTAATCCCAAAACCAAACAGCCTTTGTGAAATCCTCCAGAGCCTTTCGTaGAGGAGGTTTCGCTGCAAA | + |
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Preference number: 4 (lower is better) Translates to: RLLTFRTVIPKPNSLCEILQSLS*RRFRCK Trigger: TTTGCAGCGAAACCTCCTGCACGAAAGGCTCTGGAG...GATTTCACAAAGGCTGTTTGGTTTTGGGATTACCGTCCTAAAAGTTAGCAGTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163924.2 |
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| CDS-3UTR GCA 90 bp | ACTGTATTTCCAAGAAGGATGTGTCACAGACCTTACCAGGCTGAGGAAAAAGGGAGGTGCTGGGCTAAATaGATCTCCCATGTTTATTGC | + |
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Preference number: 4 (lower is better) Translates to: TVFPRRMCHRPYQAEEKGRCWAK*ISHVYC Trigger: GCAATAAACATGGGAGATGCATTTAGCCCAGCACCT...CCCTTTTTCCTCAGCCTGGTAAGGTCTGTGACACATCCTTCTTGGAAATACAGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
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| CDS-3UTR GCA 90 bp | AACCAGGCAGAAAAACAAACAAAATCTACTGCAATGTGTGCTGCTCTTCAGAGATACACCACTCATCGGTaGCTGGGGAGTTTCAGAACC | + |
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Preference number: 4 (lower is better) Translates to: NQAEKQTKSTAMCAALQRYTTHR*LGSFRT Trigger: GGTTCTGAAACTCCCCAGGCACCGATGAGTGGTGTA...TCTCTGAAGAGCAGCACACATTGCAGTAGATTTTGTTTGTTTTTCTGCCTGGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
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| CDS-3UTR TCA 90 bp | TCCACACACAGTAGAGTTCTGTTTCTAAGGGTAAAGAGTCTACACAGAAAAAGCTCCTCCTGCTCTCTGTaGCGGATCATTTCTTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: STHSRVLFLRVKSLHRKSSSCSL*RIISSS Trigger: TGAAGAAGAAATGATCCGTCACAGAGAGCAGGAGGA...GCTTTTTCTGTGTAGACTCTTTACCCTTAGAAACAGAACTCTACTGTGTGTGGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000163924.2 |
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| CDS-3UTR GCA 90 bp | ACTGTATTTCCAAGAAGGATGTGTCACAGACCTTACCAGGCTGAGGAAAAAGGGCGTCTCATTAGATCTTaGCTCATTAGCATTAACTGG | + |
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Preference number: 4 (lower is better) Translates to: TVFPRRMCHRPYQAEEKGRLIRS*LISINW Trigger: CCAGTTAATGCTAATGAGGCAAGATCTAATGAGACG...CCCTTTTTCCTCAGCCTGGTAAGGTCTGTGACACATCCTTCTTGGAAATACAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
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| CDS-3UTR GCA 90 bp | CAGTTCTACAATGAACGATGCCTTCCTTTTAATCTCTCTCTGATCCCAATGGATAGGTGCTGGGCTAAATaGATCTCCCATGTTTATTGC | + |
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Preference number: 4 (lower is better) Translates to: QFYNERCLPFNLSLIPMDRCWAK*ISHVYC Trigger: GCAATAAACATGGGAGATGCATTTAGCCCAGCACCT...ATCCATTGGGATCAGAGAGAGATTAAAAGGAAGGCATCGTTCATTGTAGAACTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163924.2 |
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| CDS-3UTR CCA 90 bp | GATATCAAGAAGACCAGTGTATTACTCTTCAGTTCTACAATGAACGATGCCTTCGTCTGCTCTTCAGTATaGTGCCATCCAACTCTGCTT | + |
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Preference number: 4 (lower is better) Translates to: DIKKTSVLLFSSTMNDAFVCSSV*CHPTLL Trigger: AAGCAGAGTTGGATGGCACCATACTGAAGAGCAGAC...GAAGGCATCGTTCATTGTAGAACTGAAGAGTAATACACTGGTCTTCTTGATATC 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163924.2 |
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| CDS-3UTR CCA 90 bp | AACCAGGCAGAAAAACAAACAAAATCTACTGCAATGTGTGCTGCTCTTCAGAGATCTACTGGGCCAAACTaGGAAAATGCTTGCTCTAGA | + |
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Preference number: 4 (lower is better) Translates to: NQAEKQTKSTAMCAALQRSTGPN*ENACSR Trigger: TCTAGAGCAAGCATTTTCCCAGTTTGGCCCAGTAGA...TCTCTGAAGAGCAGCACACATTGCAGTAGATTTTGTTTGTTTTTCTGCCTGGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
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| CDS-3UTR CCA 90 bp | AGACTGCTAACTTTTAGGACGGTAATCCCAAAACCAAACAGCCTTTGTGAAATCTCTACTGGGCCAAACTaGGAAAATGCTTGCTCTAGA | + |
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Preference number: 4 (lower is better) Translates to: RLLTFRTVIPKPNSLCEISTGPN*ENACSR Trigger: TCTAGAGCAAGCATTTTCCCAGTTTGGCCCAGTAGA...GATTTCACAAAGGCTGTTTGGTTTTGGGATTACCGTCCTAAAAGTTAGCAGTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000163924.2 |
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| 3UTR CAA 72 bp | TCTACACAGAAAAAGCGCAATCATAAACATTTAGCCTaGCATCCATTCACTGGCAGACAGGAGTTAAACGCA | + |
|
Preference number: 4 (lower is better) Translates to: STQKKRNHKHLA*HPFTGRQELNA Trigger: TGCGTTTAACTCCTGTCTGCCAGTGAATGGATGCAAGGCTAAATGTTTATGATTGCGCTTTTTCTGTGTAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000163924.2 |
||
| CDS-3UTR CCA 90 bp | GATATCAAGAAGACCAGTGTATTACTCTTCAGTTCTACAATGAACGATGCCTTCAACAGCTTTCTCTACTaGGCCAAACTGGGAAAATGC | + |
|
Preference number: 4 (lower is better) Translates to: DIKKTSVLLFSSTMNDAFNSFLY*AKLGKC Trigger: GCATTTTCCCAGTTTGGCCCAGTAGAGAAAGCTGTT...GAAGGCATCGTTCATTGTAGAACTGAAGAGTAATACACTGGTCTTCTTGATATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163924.2 |
||
| CDS-3UTR TCA 90 bp | AACCAGGCAGAAAAACAAACAAAATCTACTGCAATGTGTGCTGCTCTTCAGAGATCCTTATGGTACTGTTaGGTTTTCTGCATTAGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: NQAEKQTKSTAMCAALQRSLWYC*VFCISF Trigger: GAAGCTAATGCAGAAAACTCAACAGTACCATAAGGA...TCTCTGAAGAGCAGCACACATTGCAGTAGATTTTGTTTGTTTTTCTGCCTGGTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
||
| CDS-3UTR TCA 90 bp | AGACTGCTAACTTTTAGGACGGTAATCCCAAAACCAAACAGCCTTTGTGAAATCTCCTTATGGTACTGTTaGGTTTTCTGCATTAGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: RLLTFRTVIPKPNSLCEISLWYC*VFCISF Trigger: GAAGCTAATGCAGAAAACTCAACAGTACCATAAGGA...GATTTCACAAAGGCTGTTTGGTTTTGGGATTACCGTCCTAAAAGTTAGCAGTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000163924.2 |
||
| CDS-3UTR GCA 90 bp | AACCAGGCAGAAAAACAAACAAAATCTACTGCAATGTGTGCTGCTCTTCAGAGATGCAGGAGGTTTCGCTaGAAATTCTACAAAACCTTT | + |
|
Preference number: 4 (lower is better) Translates to: NQAEKQTKSTAMCAALQRCRRFR*KFYKTF Trigger: AAAGGTTTTGTAGAATTTGCAGCGAAACCTCCTGCA...TCTCTGAAGAGCAGCACACATTGCAGTAGATTTTGTTTGTTTTTCTGCCTGGTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
||
| CDS-3UTR GCA 90 bp | CAGTTCTACAATGAACGATGCCTTCCTTTTAATCTCTCTCTGATCCCAATGGATTGCAGGAGGTTTCGCTaGAAATTCTACAAAACCTTT | + |
|
Preference number: 4 (lower is better) Translates to: QFYNERCLPFNLSLIPMDCRRFR*KFYKTF Trigger: AAAGGTTTTGTAGAATTTGCAGCGAAACCTCCTGCA...ATCCATTGGGATCAGAGAGAGATTAAAAGGAAGGCATCGTTCATTGTAGAACTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163924.2 |
||
| CDS-3UTR CCA 90 bp | AGCAACAACTCTAACTTACACAGGATCTATGGTTTATACAATCTTAACCCCCATGCTCTAGAAGCTCATTaGAAACAACCGGAGAAAGGT | + |
|
Preference number: 4 (lower is better) Translates to: SNNSNLHRIYGLYNLNPHALEAH*KQPEKG Trigger: ACCTTTCTCCGGTTGTTTCCAATGAGCTTCTAGAGC...ATGGGGGTTAAGATTGTATAAACCATAGATCCTGTGTAAGTTAGAGTTGTTGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
||
| CDS-3UTR CCA 90 bp | AGCAACAACTCTAACTTACACAGGATCTATGGTTTATACAATCTTAACCCCCATAACAGCTTTCTCTACTaGGCCAAACTGGGAAAATGC | + |
|
Preference number: 4 (lower is better) Translates to: SNNSNLHRIYGLYNLNPHNSFLY*AKLGKC Trigger: GCATTTTCCCAGTTTGGCCCAGTAGAGAAAGCTGTT...ATGGGGGTTAAGATTGTATAAACCATAGATCCTGTGTAAGTTAGAGTTGTTGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
||
| CDS-3UTR GCA 90 bp | TTTCTCTTCACTGGCTGTACATCCATACTACCAAAGGAAATGACACCACGTTATTGTCTCAGTTGTATTTaGTTTCGTTTCTGCAGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: FLFTGCTSILPKEMTPRYCLSCI*FRFCSS Trigger: AGAACTGCAGAAACGAAAGCAAATACAACTGAGACA...ATAACGTGGTGTCATTTCCTTTGGTAGTATGGATGTACAGCCAGTGAAGAGAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163924.2 |
||
| CDS-3UTR GCA 90 bp | GATATCAAGAAGACCAGTGTATTACTCTTCAGTTCTACAATGAACGATGCCTTCTTCTCAATACGTACTTaGTTCAGGTTTCCTCTTAAC | + |
|
Preference number: 4 (lower is better) Translates to: DIKKTSVLLFSSTMNDAFFSIRT*FRFPLN Trigger: GTTAAGAGGAAACCTGAAGCAAGTACGTATTGAGAA...GAAGGCATCGTTCATTGTAGAACTGAAGAGTAATACACTGGTCTTCTTGATATC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163924.2 |
||
| CDS-3UTR GCA 90 bp | AGAGTTCTGTTTCTAAGGGTAAAGAGTCTACACAGAAAAAGCGCAATCATAAACCGTCTCATTAGATCTTaGCTCATTAGCATTAACTGG | + |
|
Preference number: 4 (lower is better) Translates to: RVLFLRVKSLHRKSAIINRLIRS*LISINW Trigger: CCAGTTAATGCTAATGAGGCAAGATCTAATGAGACG...GTTTATGATTGCGCTTTTTCTGTGTAGACTCTTTACCCTTAGAAACAGAACTCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000163924.2 |
||
| CDS-3UTR GCA 90 bp | GAGGTGTTCTGTAAGAGGACGATGTATGAATACATGGAAATGTTAGGAGAGAAATGTCTCAGTTGTATTTaGTTTCGTTTCTGCAGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: EVFCKRTMYEYMEMLGEKCLSCI*FRFCSS Trigger: AGAACTGCAGAAACGAAAGCAAATACAACTGAGACA...TTTCTCTCCTAACATTTCCATGTATTCATACATCGTCCTCTTACAGAACACCTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
||
| CDS-3UTR GCA 90 bp | AGCAACAACTCTAACTTACACAGGATCTATGGTTTATACAATCTTAACCCCCATTTCTCAATACGTACTTaGTTCAGGTTTCCTCTTAAC | + |
|
Preference number: 4 (lower is better) Translates to: SNNSNLHRIYGLYNLNPHFSIRT*FRFPLN Trigger: GTTAAGAGGAAACCTGAAGCAAGTACGTATTGAGAA...ATGGGGGTTAAGATTGTATAAACCATAGATCCTGTGTAAGTTAGAGTTGTTGCT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
||
| CDS CCA 90 bp | AAGGTGCGGGTGGCGGCGCCTGCTCGCCGGCCAGCGTCAGCGCCATaGCCGCCGCGGCCACCGGTTCGCTCTCTCCGGCCGCCGACTCCA | + |
|
Preference number: 5 (lower is better) Translates to: KVRVAAPARRPASAP*PPRPPVRSLRPPTP Trigger: TGGAGTCGGCGGCCGGAGAGAGCGAACCGGTGGCCGCGGCGGCCATGGCGCTGACGCTGGCCGGCGAGCAGGCGCCGCCACCCGCACCTT 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022507.13 ENSMUST00000163924.2 |
||
| CDS GCA 90 bp | AATTCCTCGTCCGGGTGCTCCTCGGAAGGTGCGGGTGGCGGCGCCTaGTCGCCGGCCAGCGTCAGCGCCATGGCCGCCGCGGCCACCGGT | + |
|
Preference number: 5 (lower is better) Translates to: NSSSGCSSEGAGGGA*SPASVSAMAAAATG Trigger: ACCGGTGGCCGCGGCGGCCATGGCGCTGACGCTGGCCGGCGAGCAGGCGCCGCCACCCGCACCTTCCGAGGAGCACCCGGACGAGGAATT 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022507.13 ENSMUST00000163924.2 |
||
| CDS CCA 90 bp | GGTGAAGCCCAATTCCTCGTCCGGGTGCTCCTCGGAAGGTGCGGGTaGCGGCGCCTGCTCGCCGGCCAGCGTCAGCGCCATGGCCGCCGC | + |
|
Preference number: 5 (lower is better) Translates to: GEAQFLVRVLLGRCG*RRLLAGQRQRHGRR Trigger: GCGGCGGCCATGGCGCTGACGCTGGCCGGCGAGCAGGCGCCGCCACCCGCACCTTCCGAGGAGCACCCGGACGAGGAATTGGGCTTCACC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022507.13 ENSMUST00000163924.2 |
||
| CDS GCA 90 bp | GTCGATGGTGAAGCCCAATTCCTCGTCCGGGTGCTCCTCGGAAGGTaGGGGTGGCGGCGCCTGCTCGCCGGCCAGCGTCAGCGCCATGGC | + |
|
Preference number: 5 (lower is better) Translates to: VDGEAQFLVRVLLGR*GWRRLLAGQRQRHG Trigger: GCCATGGCGCTGACGCTGGCCGGCGAGCAGGCGCCGCCACCCGCACCTTCCGAGGAGCACCCGGACGAGGAATTGGGCTTCACCATCGAC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022507.13 ENSMUST00000163924.2 |
||
| CDS GCA 90 bp | TCCGTGATGTCTGTGGGCAGGTTACCCACGAAGAGGCGGCAGCGCTaGGTGTACGTCTTCTCGCCCGGCTTGAGGAAACTCTTGATGTCG | + |
|
Preference number: 5 (lower is better) Translates to: SVMSVGRLPTKRRQR*VYVFSPGLRKLLMS Trigger: CGACATCAAGAGTTTCCTCAAGCCGGGCGAGAAGACGTACACGCAGCGCTGCCGCCTCTTCGTGGGTAACCTGCCCACAGACATCACGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022507.13 ENSMUST00000163924.2 |
||
| CDS-3UTR CAA 90 bp | GACTGTCCCTCAGAGGCTGACTTCTCTCAGAGAAACCTTGGTAAGCACTGGAACTTCAAATGTCCCAGGTaGAGCAAACCGTGGTGGCTG | + |
|
Preference number: 5 (lower is better) Translates to: DCPSEADFSQRNLGKHWNFKCPR*SKPWWL Trigger: CAGCCACCACGGTTTGCTCAACCTGGGACATTTGAA...GTTCCAGTGCTTACCAAGGTTTCTCTGAGAGAAGTCAGCCTCTGAGGGACAGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
||
| CDS-3UTR CAA 90 bp | GGAAATGTTAGGAGAGAAAACACCTGCCACGATCATGGGTTGGGCAACTGGATAGTCTTCTCGCCCGGCTaGAGGAAACTCTTGATGTCG | + |
|
Preference number: 5 (lower is better) Translates to: GNVRRENTCHDHGLGNWIVFSPG*RKLLMS Trigger: CGACATCAAGAGTTTCCTCAAGCCGGGCGAGAAGAC...TATCCAGTTGCCCAACCCATGATCGTGGCAGGTGTTTTCTCTCCTAACATTTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
||
| CDS-3UTR CAA 90 bp | ACTGTATTTCCAAGAAGGATGTGTCACAGACCTTACCAGGCTGAGGAAAAAGGGCGCTCAAAGAGGCGCTaGAAGTCCTCCTCCGTGATG | + |
|
Preference number: 5 (lower is better) Translates to: TVFPRRMCHRPYQAEEKGRSKRR*KSSSVM Trigger: CATCACGGAGGAGGACTTCAAGCGCCTCTTTGAGCG...CCCTTTTTCCTCAGCCTGGTAAGGTCTGTGACACATCCTTCTTGGAAATACAGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
||
| CDS GCA 90 bp | GCGAATTCGGAGAGGTCTGCTCTTCAGTATGGTGCCATCCAACTCTaGTTTTGCAATTTCAGCCAGTGTTCTCGATTCCAGGCGGATGAA | + |
|
Preference number: 5 (lower is better) Translates to: ANSERSALQYGAIQL*FCNFSQCSRFQADE Trigger: TTCATCCGCCTGGAATCGAGAACACTGGCTGAAATTGCAAAAGCAGAGTTGGATGGCACCATACTGAAGAGCAGACCTCTCCGAATTCGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022507.13 ENSMUST00000163924.2 |
||
| CDS-3UTR CAA 90 bp | AAAAAGCGCAATCATAAACATTTAGCCTTGCATCCATTCACTGGCAGACAGGAGGTCTTCTCGCCCGGCTaGAGGAAACTCTTGATGTCG | + |
|
Preference number: 5 (lower is better) Translates to: KKRNHKHLALHPFTGRQEVFSPG*RKLLMS Trigger: CGACATCAAGAGTTTCCTCAAGCCGGGCGAGAAGAC...CTCCTGTCTGCCAGTGAATGGATGCAAGGCTAAATGTTTATGATTGCGCTTTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000163924.2 |
||
| CDS-3UTR CAA 90 bp | AACCAGGCAGAAAAACAAACAAAATCTACTGCAATGTGTGCTGCTCTTCAGAGAACCGGAGAAAGGTTCTaGACCGTTAGGGCTGCTCCA | + |
|
Preference number: 5 (lower is better) Translates to: NQAEKQTKSTAMCAALQRTGERF*TVRAAP Trigger: TGGAGCAGCCCTAACGGTCAAGAACCTTTCTCCGGT...TCTCTGAAGAGCAGCACACATTGCAGTAGATTTTGTTTGTTTTTCTGCCTGGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
||
| CDS-3UTR CAA 90 bp | AGACTGCTAACTTTTAGGACGGTAATCCCAAAACCAAACAGCCTTTGTGAAATCACCGGAGAAAGGTTCTaGACCGTTAGGGCTGCTCCA | + |
|
Preference number: 5 (lower is better) Translates to: RLLTFRTVIPKPNSLCEITGERF*TVRAAP Trigger: TGGAGCAGCCCTAACGGTCAAGAACCTTTCTCCGGT...GATTTCACAAAGGCTGTTTGGTTTTGGGATTACCGTCCTAAAAGTTAGCAGTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163924.2 |
||
| CDS-3UTR CAA 90 bp | AACCAGGCAGAAAAACAAACAAAATCTACTGCAATGTGTGCTGCTCTTCAGAGAGGCTTGAGGAAACTCTaGATGTCGATGGTGAAGCCC | + |
|
Preference number: 5 (lower is better) Translates to: NQAEKQTKSTAMCAALQRGLRKL*MSMVKP Trigger: GGGCTTCACCATCGACATCAAGAGTTTCCTCAAGCC...TCTCTGAAGAGCAGCACACATTGCAGTAGATTTTGTTTGTTTTTCTGCCTGGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
||
| CDS-3UTR CAA 90 bp | AGACTGCTAACTTTTAGGACGGTAATCCCAAAACCAAACAGCCTTTGTGAAATCTTCAAATGTCCCAGGTaGAGCAAACCGTGGTGGCTG | + |
|
Preference number: 5 (lower is better) Translates to: RLLTFRTVIPKPNSLCEIFKCPR*SKPWWL Trigger: CAGCCACCACGGTTTGCTCAACCTGGGACATTTGAA...GATTTCACAAAGGCTGTTTGGTTTTGGGATTACCGTCCTAAAAGTTAGCAGTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163924.2 |
||
| CDS-3UTR CAA 90 bp | AGCAACAACTCTAACTTACACAGGATCTATGGTTTATACAATCTTAACCCCCATTTTAAAGCCGCCCTCTaGCTGTCGCCTCAGCTCCTC | + |
|
Preference number: 5 (lower is better) Translates to: SNNSNLHRIYGLYNLNPHFKAAL*LSPQLL Trigger: GAGGAGCTGAGGCGACAGCAAGAGGGCGGCTTTAAA...ATGGGGGTTAAGATTGTATAAACCATAGATCCTGTGTAAGTTAGAGTTGTTGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
||
| CDS-3UTR CAA 90 bp | AGAGTTCTGTTTCTAAGGGTAAAGAGTCTACACAGAAAAAGCGCAATCATAAACTTTAAAGCCGCCCTCTaGCTGTCGCCTCAGCTCCTC | + |
|
Preference number: 5 (lower is better) Translates to: RVLFLRVKSLHRKSAIINFKAAL*LSPQLL Trigger: GAGGAGCTGAGGCGACAGCAAGAGGGCGGCTTTAAA...GTTTATGATTGCGCTTTTTCTGTGTAGACTCTTTACCCTTAGAAACAGAACTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000163924.2 |
||
| CDS-3UTR CAA 90 bp | AGAGTTCTGTTTCTAAGGGTAAAGAGTCTACACAGAAAAAGCGCAATCATAAACGGCTTGAGGAAACTCTaGATGTCGATGGTGAAGCCC | + |
|
Preference number: 5 (lower is better) Translates to: RVLFLRVKSLHRKSAIINGLRKL*MSMVKP Trigger: GGGCTTCACCATCGACATCAAGAGTTTCCTCAAGCC...GTTTATGATTGCGCTTTTTCTGTGTAGACTCTTTACCCTTAGAAACAGAACTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000163924.2 |
||
| CDS-3UTR CAA 90 bp | CAGTTCTACAATGAACGATGCCTTCCTTTTAATCTCTCTCTGATCCCAATGGATTTCTTCGTGTCTCAGTaGTATTTGCTTTCGTTTCTG | + |
|
Preference number: 5 (lower is better) Translates to: QFYNERCLPFNLSLIPMDFFVSQ*YLLSFL Trigger: CAGAAACGAAAGCAAATACAACTGAGACACGAAGAA...ATCCATTGGGATCAGAGAGAGATTAAAAGGAAGGCATCGTTCATTGTAGAACTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163924.2 |
||
| CDS-3UTR CAA 90 bp | AGCAACAACTCTAACTTACACAGGATCTATGGTTTATACAATCTTAACCCCCATTTCTTCGTGTCTCAGTaGTATTTGCTTTCGTTTCTG | + |
|
Preference number: 5 (lower is better) Translates to: SNNSNLHRIYGLYNLNPHFFVSQ*YLLSFL Trigger: CAGAAACGAAAGCAAATACAACTGAGACACGAAGAA...ATGGGGGTTAAGATTGTATAAACCATAGATCCTGTGTAAGTTAGAGTTGTTGCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022507.13 |
||
| CDS GCA 72 bp | GAAGCCCAATTCCTCGTCCGGGTGCTCCTCGGAAGGTaGGGGTGGCGGCGCCTGCTCGCCGGCCAGCGTCAG | + |
|
Preference number: 6 (lower is better) Translates to: EAQFLVRVLLGR*GWRRLLAGQRQ Trigger: CTGACGCTGGCCGGCGAGCAGGCGCCGCCACCCGCACCTTCCGAGGAGCACCCGGACGAGGAATTGGGCTTC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022507.13 ENSMUST00000163924.2 |
||
| CDS CCA 72 bp | CAATTCCTCGTCCGGGTGCTCCTCGGAAGGTGCGGGTaGCGGCGCCTGCTCGCCGGCCAGCGTCAGCGCCAT | + |
|
Preference number: 6 (lower is better) Translates to: QFLVRVLLGRCG*RRLLAGQRQRH Trigger: ATGGCGCTGACGCTGGCCGGCGAGCAGGCGCCGCCACCCGCACCTTCCGAGGAGCACCCGGACGAGGAATTG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022507.13 ENSMUST00000163924.2 |
||
| CDS GCA 72 bp | TCTGTGGGCAGGTTACCCACGAAGAGGCGGCAGCGCTaGGTGTACGTCTTCTCGCCCGGCTTGAGGAAACTC | + |
|
Preference number: 6 (lower is better) Translates to: SVGRLPTKRRQR*VYVFSPGLRKL Trigger: GAGTTTCCTCAAGCCGGGCGAGAAGACGTACACGCAGCGCTGCCGCCTCTTCGTGGGTAACCTGCCCACAGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022507.13 ENSMUST00000163924.2 |
||
| CDS CAA 90 bp | CGGCAGCGCTGCGTGTACGTCTTCTCGCCCGGCTTGAGGAAACTCTaGATGTCGATGGTGAAGCCCAATTCCTCGTCCGGGTGCTCCTCG | + |
|
Preference number: 6 (lower is better) Translates to: RQRCVYVFSPGLRKL*MSMVKPNSSSGCSS Trigger: CGAGGAGCACCCGGACGAGGAATTGGGCTTCACCATCGACATCAAGAGTTTCCTCAAGCCGGGCGAGAAGACGTACACGCAGCGCTGCCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022507.13 ENSMUST00000163924.2 |
||
| CDS CAA 90 bp | CCCACGAAGAGGCGGCAGCGCTGCGTGTACGTCTTCTCGCCCGGCTaGAGGAAACTCTTGATGTCGATGGTGAAGCCCAATTCCTCGTCC | + |
|
Preference number: 6 (lower is better) Translates to: PTKRRQRCVYVFSPG*RKLLMSMVKPNSSS Trigger: GGACGAGGAATTGGGCTTCACCATCGACATCAAGAGTTTCCTCAAGCCGGGCGAGAAGACGTACACGCAGCGCTGCCGCCTCTTCGTGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022507.13 ENSMUST00000163924.2 |
||
| CDS CAA 72 bp | AGGCGGCAGCGCTGCGTGTACGTCTTCTCGCCCGGCTaGAGGAAACTCTTGATGTCGATGGTGAAGCCCAAT | + |
|
Preference number: 6 (lower is better) Translates to: RRQRCVYVFSPG*RKLLMSMVKPN Trigger: ATTGGGCTTCACCATCGACATCAAGAGTTTCCTCAAGCCGGGCGAGAAGACGTACACGCAGCGCTGCCGCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022507.13 ENSMUST00000163924.2 |
||
| CDS CAA 72 bp | TGCGTGTACGTCTTCTCGCCCGGCTTGAGGAAACTCTaGATGTCGATGGTGAAGCCCAATTCCTCGTCCGGG | + |
|
Preference number: 6 (lower is better) Translates to: CVYVFSPGLRKL*MSMVKPNSSSG Trigger: CCCGGACGAGGAATTGGGCTTCACCATCGACATCAAGAGTTTCCTCAAGCCGGGCGAGAAGACGTACACGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022507.13 ENSMUST00000163924.2 |
||
| CDS GCA 72 bp | GAACGCCCCATCACCACATCTCTCCAGAGCCTTTCGTaGAGGAGGTTTCGCTGCAAATTCTACAAAACCTTT | + |
|
Preference number: 6 (lower is better) Translates to: ERPITTSLQSLS*RRFRCKFYKTF Trigger: AAAGGTTTTGTAGAATTTGCAGCGAAACCTCCTGCACGAAAGGCTCTGGAGAGATGTGGTGATGGGGCGTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022507.13 ENSMUST00000163924.2 |
||
| CDS CAA 90 bp | TTCTCTACTGGGCCAAACTGGGAAAATGCTTGCTCTAGAAGCTCATaGGAAACAACCGGAGAAAGGTTCTTGACCGTTAGGGCTGCTCCA | + |
|
Preference number: 6 (lower is better) Translates to: FSTGPNWENACSRSS*ETTGERFLTVRAAP Trigger: TGGAGCAGCCCTAACGGTCAAGAACCTTTCTCCGGTTGTTTCCAATGAGCTTCTAGAGCAAGCATTTTCCCAGTTTGGCCCAGTAGAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022507.13 ENSMUST00000163924.2 |
||
| CDS GCA 72 bp | ACATCTCTCCAGAGCCTTTCGTGCAGGAGGTTTCGCTaGAAATTCTACAAAACCTTTTCCTGTGGCTCTACC | + |
|
Preference number: 6 (lower is better) Translates to: TSLQSLSCRRFR*KFYKTFSCGST Trigger: GGTAGAGCCACAGGAAAAGGTTTTGTAGAATTTGCAGCGAAACCTCCTGCACGAAAGGCTCTGGAGAGATGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022507.13 ENSMUST00000163924.2 |
||
| CDS CAA 72 bp | GGGCCAAACTGGGAAAATGCTTGCTCTAGAAGCTCATaGGAAACAACCGGAGAAAGGTTCTTGACCGTTAGG | + |
|
Preference number: 6 (lower is better) Translates to: GPNWENACSRSS*ETTGERFLTVR Trigger: CCTAACGGTCAAGAACCTTTCTCCGGTTGTTTCCAATGAGCTTCTAGAGCAAGCATTTTCCCAGTTTGGCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022507.13 ENSMUST00000163924.2 |
||
| CDS CAA 90 bp | TTCCTGTTCTCTATTTTCCATATAGTTTGGTTTAAAGCCGCCCTCTaGCTGTCGCCTCAGCTCCTCCTGCTCTCTGTGACGGATCATTTC | + |
|
Preference number: 6 (lower is better) Translates to: FLFSIFHIVWFKAAL*LSPQLLLLSVTDHF Trigger: GAAATGATCCGTCACAGAGAGCAGGAGGAGCTGAGGCGACAGCAAGAGGGCGGCTTTAAACCAAACTATATGGAAAATAGAGAACAGGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022507.13 ENSMUST00000163924.2 |
||
| CDS CCA 72 bp | TCCACAACCACAACAGCTTTCTCTACTGGGCCAAACTaGGAAAATGCTTGCTCTAGAAGCTCATTGGAAACA | + |
|
Preference number: 6 (lower is better) Translates to: STTTTAFSTGPN*ENACSRSSLET Trigger: TGTTTCCAATGAGCTTCTAGAGCAAGCATTTTCCCAGTTTGGCCCAGTAGAGAAAGCTGTTGTGGTTGTGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022507.13 ENSMUST00000163924.2 |
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