Pregenerated sensors for PSORS1C2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024409Ensembl transcript IDs: ENSMUST00000025273.9
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCTCTGCCTAGAAGTCCAGGTCTAGACAAGCAAGAACAGGCTGAGTaGGGTAGGAGTGTGCTTTCTGCTGATCAAGAGAAGCGAAGGGAC | + |
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Preference number: 1 (lower is better) Translates to: ALPRSPGLDKQEQAE*GRSVLSADQEKRRD Trigger: GTCCCTTCGCTTCTCTTGATCAGCAGAAAGCACACTCCTACCTCACTCAGCCTGTTCTTGCTTGTCTAGACCTGGACTTCTAGGCAGAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025273.9 |
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| 3UTR-3UTR TCA 90 bp | GGTAGGAGTGTGCTTTCTGCTGATCAAGAGAAGCGAAGGGACAACATAATGACTGGGATTAGGGAAAATTaGGATTCTAAGCGGGCAGCC | + |
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Preference number: 2 (lower is better) Translates to: GRSVLSADQEKRRDNIMTGIREN*DSKRAA Trigger: GGCTGCCCGCTTAGAATCTCAATTTTCCCTAATCCC...AGTCATTATGTTGTCCCTTCGCTTCTCTTGATCAGCAGAAAGCACACTCCTACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025273.9 |
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| 3UTR TCA 72 bp | AGAAGTCCAGGTCTAGACAAGCAAGAACAGGCTGAGTaGGGTAGGAGTGTGCTTTCTGCTGATCAAGAGAAG | + |
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Preference number: 3 (lower is better) Translates to: RSPGLDKQEQAE*GRSVLSADQEK Trigger: CTTCTCTTGATCAGCAGAAAGCACACTCCTACCTCACTCAGCCTGTTCTTGCTTGTCTAGACCTGGACTTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025273.9 |
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| CDS-3UTR CCA 90 bp | ATGAAAAAGGTGGGCTTTGGTGTGCTCTGTGGAGGCTCACGTTCCCTAGGGTCCGGGCTGGGTTCCTGCTaGCCAGGGGTCATCAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: MKKVGFGVLCGGSRSLGSGLGSC*PGVIRQ Trigger: CTGCCTGATGACCCCTGGCCAGCAGGAACCCAGCCC...GGACCCTAGGGAACGTGAGCCTCCACAGAGCACACCAAAGCCCACCTTTTTCAT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025273.9 |
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| CDS-3UTR CCA 90 bp | AGCAGAGAGCACAGAGCTCAGGCTCTGCCTAGAAGTCCAGGTCTAGACAAGCAAAGTGCTTGGGGGCTTTaGGGGCCAGGCACCACTGTC | + |
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Preference number: 4 (lower is better) Translates to: SREHRAQALPRSPGLDKQSAWGL*GPGTTV Trigger: GACAGTGGTGCCTGGCCCCCAAAGCCCCCAAGCACT...TTGCTTGTCTAGACCTGGACTTCTAGGCAGAGCCTGAGCTCTGTGCTCTCTGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025273.9 |
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| CDS-3UTR GCA 90 bp | AGCACCATCCTGATCGACTGTCAGTTCCCAGCTAAGAAAACCAGGGGGCAGCAGGAGAAGGGTCGCCATTaGCTGAAATGCCTCCTGCAC | + |
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Preference number: 4 (lower is better) Translates to: STILIDCQFPAKKTRGQQEKGRH*LKCLLH Trigger: GTGCAGGAGGCATTTCAGGCAATGGCGACCCTTCTC...CTGCTGCCCCCTGGTTTTCTTAGCTGGGAACTGACAGTCGATCAGGATGGTGCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025273.9 |
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| CDS-3UTR CCA 90 bp | ACCATCCTGATCGACTGTCAGTTCCCAGCTAAGAAAACCAGGGGGCAGCAGAGAGGGACGGTTGGAGCCTaGAGGCGGAGGTTCATCAAA | + |
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Preference number: 4 (lower is better) Translates to: TILIDCQFPAKKTRGQQRGTVGA*RRRFIK Trigger: TTTGATGAACCTCCGCCTCCAGGCTCCAACCGTCCC...TCTCTGCTGCCCCCTGGTTTTCTTAGCTGGGAACTGACAGTCGATCAGGATGGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025273.9 |
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| CDS-3UTR GCA 90 bp | CGTGGCTTTTATTTTTCCATTGGAAGCACCATCCTGATCGACTGTCAGTTCCCATGGGGGCTGGGTTCCTaGTGGCCAGGGGTCATCAGG | + |
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Preference number: 4 (lower is better) Translates to: RGFYFSIGSTILIDCQFPWGLGS*WPGVIR Trigger: CCTGATGACCCCTGGCCAGCAGGAACCCAGCCCCCA...TGGGAACTGACAGTCGATCAGGATGGTGCTTCCAATGGAAAAATAAAAGCCACG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000025273.9 |
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| CDS-3UTR CCA 90 bp | AGACTGAGGAAGGGAACTAAGGGATTAGGGAAAATTGAGATTCTAAGCGGGCAGTCCCAGAGGCAATGGTaGGGAGTCCTCCTCTTCGTG | + |
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Preference number: 4 (lower is better) Translates to: RLRKGTKGLGKIEILSGQSQRQW*GVLLFV Trigger: CACGAAGAGGAGGACTCCCCACCATTGCCTCTGGGA...CTGCCCGCTTAGAATCTCAATTTTCCCTAATCCCTTAGTTCCCTTCCTCAGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025273.9 |
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| CDS-3UTR CCA 90 bp | TTAGGGAAAATTGAGATTCTAAGCGGGCAGCCAATGAAAAAGGTGGGCTTTGGTGGGTCCCAGAGGCAATaGTGGGGAGTCCTCCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: LGKIEILSGQPMKKVGFGGSQRQ*WGVLLF Trigger: GAAGAGGAGGACTCCCCACCATTGCCTCTGGGACCC...ACCAAAGCCCACCTTTTTCATTGGCTGCCCGCTTAGAATCTCAATTTTCCCTAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025273.9 |
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| CDS-3UTR TCA 90 bp | TTAGGGAAAATTGAGATTCTAAGCGGGCAGCCAATGAAAAAGGTGGGCTTTGGTAGGGTCGCCATTGCCTaGAATGCCTCCTGCACACAG | + |
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Preference number: 4 (lower is better) Translates to: LGKIEILSGQPMKKVGFGRVAIA*NASCTQ Trigger: CTGTGTGCAGGAGGCATTTCAGGCAATGGCGACCCT...ACCAAAGCCCACCTTTTTCATTGGCTGCCCGCTTAGAATCTCAATTTTCCCTAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025273.9 |
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| CDS-3UTR CCA 90 bp | GGTAGGAGTGTGCTTTCTGCTGATCAAGAGAAGCGAAGGGACAACATAATGACTGAGTCCTCCTCTTCGTaGGTGTCTGTAGATCCGGGA | + |
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Preference number: 4 (lower is better) Translates to: GRSVLSADQEKRRDNIMTESSSS*VSVDPG Trigger: TCCCGGATCTACAGACACCCACGAAGAGGAGGACTC...AGTCATTATGTTGTCCCTTCGCTTCTCTTGATCAGCAGAAAGCACACTCCTACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025273.9 |
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| CDS-3UTR CCA 90 bp | GGTAGGAGTGTGCTTTCTGCTGATCAAGAGAAGCGAAGGGACAACATAATGACTATACTCTTCCTGGGGTaGGTCAAGGTCTGGCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: GRSVLSADQEKRRDNIMTILFLG*VKVWLL Trigger: GAGGAGCCAGACCTTGACCCACCCCAGGAAGAGTAT...AGTCATTATGTTGTCCCTTCGCTTCTCTTGATCAGCAGAAAGCACACTCCTACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025273.9 |
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| CDS-3UTR GCA 90 bp | CGTGGCTTTTATTTTTCCATTGGAAGCACCATCCTGATCGACTGTCAGTTCCCACGCCATTGCCTGAAATaGCTCCTGCACACAGGCAAA | + |
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Preference number: 4 (lower is better) Translates to: RGFYFSIGSTILIDCQFPRHCLK*LLHTGK Trigger: TTTGCCTGTGTGCAGGAGGCATTTCAGGCAATGGCG...TGGGAACTGACAGTCGATCAGGATGGTGCTTCCAATGGAAAAATAAAAGCCACG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025273.9 |
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| CDS-3UTR CCA 90 bp | CGTGGCTTTTATTTTTCCATTGGAAGCACCATCCTGATCGACTGTCAGTTCCCATATCTATACTCTTCCTaGGGTGGGTCAAGGTCTGGC | + |
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Preference number: 4 (lower is better) Translates to: RGFYFSIGSTILIDCQFPYLYSS*GGSRSG Trigger: GCCAGACCTTGACCCACCCCAGGAAGAGTATAGATA...TGGGAACTGACAGTCGATCAGGATGGTGCTTCCAATGGAAAAATAAAAGCCACG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025273.9 |
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| CDS CCA 90 bp | CCCAGGCCAGGGATCACCAGGGATTGGGGGTCCCAGAGGCAATGGTaGGGAGTCCTCCTCTTCGTGGGTGTCTGTAGATCCGGGAGAAGG | + |
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Preference number: 5 (lower is better) Translates to: PRPGITRDWGSQRQW*GVLLFVGVCRSGRR Trigger: CCTTCTCCCGGATCTACAGACACCCACGAAGAGGAGGACTCCCCACCATTGCCTCTGGGACCCCCAATCCCTGGTGATCCCTGGCCTGGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025273.9 |
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| CDS CCA 90 bp | CCAGGCACCACTGTCAGGAAGATCTCTCCAGGGACGGTTGGAGCCTaGAGGCGGAGGTTCATCAAACAAAGGAGGCGCCCCAGGCCAGGG | + |
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Preference number: 5 (lower is better) Translates to: PGTTVRKISPGTVGA*RRRFIKQRRRPRPG Trigger: CCCTGGCCTGGGGCGCCTCCTTTGTTTGATGAACCTCCGCCTCCAGGCTCCAACCGTCCCTGGAGAGATCTTCCTGACAGTGGTGCCTGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025273.9 |
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| CDS CCA 90 bp | GGGATTGGGGGTCCCAGAGGCAATGGTGGGGAGTCCTCCTCTTCGTaGGTGTCTGTAGATCCGGGAGAAGGGTCGCCATTGCCTGAAATG | + |
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Preference number: 5 (lower is better) Translates to: GIGGPRGNGGESSSS*VSVDPGEGSPLPEM Trigger: CATTTCAGGCAATGGCGACCCTTCTCCCGGATCTACAGACACCCACGAAGAGGAGGACTCCCCACCATTGCCTCTGGGACCCCCAATCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025273.9 |
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| CDS-3UTR CAA 90 bp | GAGCACAGAGCTCAGGCTCTGCCTAGAAGTCCAGGTCTAGACAAGCAAGAACAGCAGTGCTTGGGGGCTTaGGGGGCCAGGCACCACTGT | + |
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Preference number: 5 (lower is better) Translates to: EHRAQALPRSPGLDKQEQQCLGA*GARHHC Trigger: ACAGTGGTGCCTGGCCCCCAAAGCCCCCAAGCACTG...CTGTTCTTGCTTGTCTAGACCTGGACTTCTAGGCAGAGCCTGAGCTCTGTGCTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000025273.9 |
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| CDS-3UTR CAA 90 bp | AGACTGAGGAAGGGAACTAAGGGATTAGGGAAAATTGAGATTCTAAGCGGGCAGAGGGATCACCAGGGATaGGGGGTCCCAGAGGCAATG | + |
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Preference number: 5 (lower is better) Translates to: RLRKGTKGLGKIEILSGQRDHQG*GVPEAM Trigger: CATTGCCTCTGGGACCCCCAATCCCTGGTGATCCCT...CTGCCCGCTTAGAATCTCAATTTTCCCTAATCCCTTAGTTCCCTTCCTCAGTCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025273.9 |
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| CDS-3UTR CAA 90 bp | TTAGGGAAAATTGAGATTCTAAGCGGGCAGCCAATGAAAAAGGTGGGCTTTGGTGGAGAAGGGTCGCCATaGCCTGAAATGCCTCCTGCA | + |
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Preference number: 5 (lower is better) Translates to: LGKIEILSGQPMKKVGFGGEGSP*PEMPPA Trigger: TGCAGGAGGCATTTCAGGCAATGGCGACCCTTCTCC...ACCAAAGCCCACCTTTTTCATTGGCTGCCCGCTTAGAATCTCAATTTTCCCTAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025273.9 |
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| CDS CCA 72 bp | GGGATCACCAGGGATTGGGGGTCCCAGAGGCAATGGTaGGGAGTCCTCCTCTTCGTGGGTGTCTGTAGATCC | + |
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Preference number: 6 (lower is better) Translates to: GITRDWGSQRQW*GVLLFVGVCRS Trigger: GGATCTACAGACACCCACGAAGAGGAGGACTCCCCACCATTGCCTCTGGGACCCCCAATCCCTGGTGATCCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025273.9 |
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| CDS CCA 72 bp | CCAGGGATCACCAGGGATTGGGGGTCCCAGAGGCAATaGTGGGGAGTCCTCCTCTTCGTGGGTGTCTGTAGA | + |
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Preference number: 6 (lower is better) Translates to: PGITRDWGSQRQ*WGVLLFVGVCR Trigger: TCTACAGACACCCACGAAGAGGAGGACTCCCCACCATTGCCTCTGGGACCCCCAATCCCTGGTGATCCCTGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025273.9 |
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| CDS TCA 72 bp | TACTCTTCCTGGGGTGGGTCAAGGTCTGGCTCCTCCTaGGATTCATGGTCCATCTCAGGGGCAGGAGGCCAG | + |
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Preference number: 6 (lower is better) Translates to: YSSWGGSRSGSS*DSWSISGAGGQ Trigger: CTGGCCTCCTGCCCCTGAGATGGACCATGAATCTCAGGAGGAGCCAGACCTTGACCCACCCCAGGAAGAGTA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025273.9 |
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| CDS CCA 72 bp | ACTGTCAGGAAGATCTCTCCAGGGACGGTTGGAGCCTaGAGGCGGAGGTTCATCAAACAAAGGAGGCGCCCC | + |
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Preference number: 6 (lower is better) Translates to: TVRKISPGTVGA*RRRFIKQRRRP Trigger: GGGGCGCCTCCTTTGTTTGATGAACCTCCGCCTCCAGGCTCCAACCGTCCCTGGAGAGATCTTCCTGACAGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025273.9 |
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| CDS CAA 72 bp | TCGTGGGTGTCTGTAGATCCGGGAGAAGGGTCGCCATaGCCTGAAATGCCTCCTGCACACAGGCAAAGGACC | + |
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Preference number: 6 (lower is better) Translates to: SWVSVDPGEGSP*PEMPPAHRQRT Trigger: GGTCCTTTGCCTGTGTGCAGGAGGCATTTCAGGCAATGGCGACCCTTCTCCCGGATCTACAGACACCCACGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025273.9 |
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| CDS CAA 72 bp | CAGGCACCACTGTCAGGAAGATCTCTCCAGGGACGGTaGGAGCCTGGAGGCGGAGGTTCATCAAACAAAGGA | + |
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Preference number: 6 (lower is better) Translates to: QAPLSGRSLQGR*EPGGGGSSNKG Trigger: TCCTTTGTTTGATGAACCTCCGCCTCCAGGCTCCAACCGTCCCTGGAGAGATCTTCCTGACAGTGGTGCCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025273.9 |
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