Pregenerated sensors for PSMG4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071451Ensembl transcript IDs: ENSMUST00000124996.8, ENSMUST00000147632.3
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TATTTCAATGTCATTTATATACACGTTACAAACTCTTCCTTCTGCTaGTCAGAACTTTTCCGGAAAGGTCTCCATTTCTTCCTTAATCCT | + |
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Preference number: 1 (lower is better) Translates to: YFNVIYIHVTNSSFC*SELFRKGLHFFLNP Trigger: AGGATTAAGGAAGAAATGGAGACCTTTCCGGAAAAGTTCTGAGCAGCAGAAGGAAGAGTTTGTAACGTGTATATAAATGACATTGAAATA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124996.8 |
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| 3UTR GCA 90 bp | GTTTATTTCAATGTCATTTATATACACGTTACAAACTCTTCCTTCTaGTGCTCAGAACTTTTCCGGAAAGGTCTCCATTTCTTCCTTAAT | + |
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Preference number: 1 (lower is better) Translates to: VYFNVIYIHVTNSSF*CSELFRKGLHFFLN Trigger: ATTAAGGAAGAAATGGAGACCTTTCCGGAAAAGTTCTGAGCAGCAGAAGGAAGAGTTTGTAACGTGTATATAAATGACATTGAAATAAAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124996.8 |
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| 3UTR GCA 72 bp | GTCATTTATATACACGTTACAAACTCTTCCTTCTGCTaGTCAGAACTTTTCCGGAAAGGTCTCCATTTCTTC | + |
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Preference number: 3 (lower is better) Translates to: VIYIHVTNSSFC*SELFRKGLHFF Trigger: GAAGAAATGGAGACCTTTCCGGAAAAGTTCTGAGCAGCAGAAGGAAGAGTTTGTAACGTGTATATAAATGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124996.8 |
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| CDS-3UTR GCA 90 bp | ACACGTTACAAACTCTTCCTTCTGCTGCTCAGAACTTTTCCGGAAAGGTCTCCAGCGAGGTTGCGTAGATaGGGCGTTGCTCCCACCCAC | + |
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Preference number: 4 (lower is better) Translates to: TRYKLFLLLLRTFPERSPARLRR*GVAPTH Trigger: GTGGGTGGGAGCAACGCCGCATCTACGCAACCTCGC...TGGAGACCTTTCCGGAAAAGTTCTGAGCAGCAGAAGGAAGAGTTTGTAACGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124996.8 |
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| CDS-3UTR TCA 90 bp | CTTCCTTCTGCTGCTCAGAACTTTTCCGGAAAGGTCTCCATTTCTTCCTTAATCGTCAGCCGCATGACATaGAAGTGGACCAGCTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: LPSAAQNFSGKVSISSLIVSRMT*KWTSCS Trigger: GGAGCAGCTGGTCCACTTTCATGTCATGCGGCTGAC...GATTAAGGAAGAAATGGAGACCTTTCCGGAAAAGTTCTGAGCAGCAGAAGGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124996.8 |
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| CDS-3UTR CCA 90 bp | TCCTTCTGCTGCTCAGAACTTTTCCGGAAAGGTCTCCATTTCTTCCTTAATCCTCAAACACCTGTTTGCTaGTCTTCCGGGGTAGCGGCT | + |
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Preference number: 4 (lower is better) Translates to: SFCCSELFRKGLHFFLNPQTPVC*SSGVAA Trigger: AGCCGCTACCCCGGAAGACCAGCAAACAGGTGTTTG...AGGATTAAGGAAGAAATGGAGACCTTTCCGGAAAAGTTCTGAGCAGCAGAAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124996.8 |
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| CDS-3UTR TCA 90 bp | CACGTTACAAACTCTTCCTTCTGCTGCTCAGAACTTTTCCGGAAAGGTCTCCATTGGAGAGGTTGTAGCTaGCAAACACCTGTTTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: HVTNSSFCCSELFRKGLHWRGCS*QTPVCW Trigger: CCAGCAAACAGGTGTTTGTCAGCTACAACCTCTCCA...ATGGAGACCTTTCCGGAAAAGTTCTGAGCAGCAGAAGGAAGAGTTTGTAACGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124996.8 |
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| CDS-3UTR GCA 90 bp | TTCTGCTGCTCAGAACTTTTCCGGAAAGGTCTCCATTTCTTCCTTAATCCTGTTCTGCTCCCACAGCCTTaGACTGAAGTTGTGAAGCGA | + |
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Preference number: 4 (lower is better) Translates to: FCCSELFRKGLHFFLNPVLLPQP*TEVVKR Trigger: TCGCTTCACAACTTCAGTGCAAGGCTGTGGGAGCAG...AACAGGATTAAGGAAGAAATGGAGACCTTTCCGGAAAAGTTCTGAGCAGCAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124996.8 |
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| CDS-3UTR TCA 90 bp | ATTTATATACACGTTACAAACTCTTCCTTCTGCTGCTCAGAACTTTTCCGGAAAAATCCGTCAGCCGCATaGCATGAAAGTGGACCAGCT | + |
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Preference number: 4 (lower is better) Translates to: IYIHVTNSSFCCSELFRKNPSAA*HESGPA Trigger: AGCTGGTCCACTTTCATGTCATGCGGCTGACGGATT...TTTCCGGAAAAGTTCTGAGCAGCAGAAGGAAGAGTTTGTAACGTGTATATAAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000124996.8 |
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| CDS GCA 90 bp | CGTCAGCCGCATGACATGAAAGTGGACCAGCTGCTCCCACAGCCTTaGACTGAAGTTGTGAAGCGACACGTCCGCGTCCGCAGCGGCCCG | + |
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Preference number: 5 (lower is better) Translates to: RQPHDMKVDQLLPQP*TEVVKRHVRVRSGP Trigger: CGGGCCGCTGCGGACGCGGACGTGTCGCTTCACAACTTCAGTGCAAGGCTGTGGGAGCAGCTGGTCCACTTTCATGTCATGCGGCTGACG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000124996.8 ENSMUST00000147632.3 |
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| CDS GCA 90 bp | TTGCTGGTCTTCCGGGGTAGCGGCTGCACATGGCCACTGCGAGGTTaGGTAGATGCGGCGTTGCTCCCACCCACAGGAAGAGCGAATCCG | + |
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Preference number: 5 (lower is better) Translates to: LLVFRGSGCTWPLRG*VDAALLPPTGRANP Trigger: CGGATTCGCTCTTCCTGTGGGTGGGAGCAACGCCGCATCTACGCAACCTCGCAGTGGCCATGTGCAGCCGCTACCCCGGAAGACCAGCAA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124996.8 |
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| CDS CCA 90 bp | CAAAAAGGGAGGTGCACACAGGGATGGGGTCGTAGCGGCTGCACATaGCCACTGCGAGGTTGCGTAGATGCGGCGTTGCTCCCACCCACA | + |
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Preference number: 5 (lower is better) Translates to: QKGRCTQGWGRSGCT*PLRGCVDAALLPPT Trigger: TGTGGGTGGGAGCAACGCCGCATCTACGCAACCTCGCAGTGGCCATGTGCAGCCGCTACGACCCCATCCCTGTGTGCACCTCCCTTTTTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000147632.3 |
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| CDS GCA 90 bp | TGTCTCCAAAAAGGGAGGTGCACACAGGGATGGGGTCGTAGCGGCTaGACATGGCCACTGCGAGGTTGCGTAGATGCGGCGTTGCTCCCA | + |
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Preference number: 5 (lower is better) Translates to: CLQKGRCTQGWGRSG*TWPLRGCVDAALLP Trigger: TGGGAGCAACGCCGCATCTACGCAACCTCGCAGTGGCCATGTGCAGCCGCTACGACCCCATCCCTGTGTGCACCTCCCTTTTTGGAGACA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000147632.3 |
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| CDS-3UTR CAA 90 bp | CAAACTCTTCCTTCTGCTGCTCAGAACTTTTCCGGAAAGGTCTCCATTTCTTCCCTGACAAACACCTGTTaGCTGGTCTTCCGGGGTAGC | + |
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Preference number: 5 (lower is better) Translates to: QTLPSAAQNFSGKVSISSLTNTC*LVFRGS Trigger: GCTACCCCGGAAGACCAGCAAACAGGTGTTTGTCAG...GGAAGAAATGGAGACCTTTCCGGAAAAGTTCTGAGCAGCAGAAGGAAGAGTTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124996.8 |
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| CDS-3UTR CAA 90 bp | ATTTATATACACGTTACAAACTCTTCCTTCTGCTGCTCAGAACTTTTCCGGAAATGCGTAGATGCGGCGTaGCTCCCACCCACAGGAAGA | + |
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Preference number: 5 (lower is better) Translates to: IYIHVTNSSFCCSELFRKCVDAA*LPPTGR Trigger: TCTTCCTGTGGGTGGGAGCAACGCCGCATCTACGCA...TTTCCGGAAAAGTTCTGAGCAGCAGAAGGAAGAGTTTGTAACGTGTATATAAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124996.8 |
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| CDS TCA 72 bp | TGGACCAGCTGCTCCCACAGCCTTGCACTGAAGTTGTaGAGCGACACGTCCGCGTCCGCAGCGGCCCGAGAC | + |
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Preference number: 6 (lower is better) Translates to: WTSCSHSLALKL*SDTSASAAARD Trigger: GTCTCGGGCCGCTGCGGACGCGGACGTGTCGCTTCACAACTTCAGTGCAAGGCTGTGGGAGCAGCTGGTCCA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000124996.8 ENSMUST00000147632.3 |
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| CDS GCA 72 bp | TTCCGGGGTAGCGGCTGCACATGGCCACTGCGAGGTTaGGTAGATGCGGCGTTGCTCCCACCCACAGGAAGA | + |
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Preference number: 6 (lower is better) Translates to: FRGSGCTWPLRG*VDAALLPPTGR Trigger: TCTTCCTGTGGGTGGGAGCAACGCCGCATCTACGCAACCTCGCAGTGGCCATGTGCAGCCGCTACCCCGGAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124996.8 |
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| CDS GCA 72 bp | AAAGGGAGGTGCACACAGGGATGGGGTCGTAGCGGCTaGACATGGCCACTGCGAGGTTGCGTAGATGCGGCG | + |
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Preference number: 6 (lower is better) Translates to: KGRCTQGWGRSG*TWPLRGCVDAA Trigger: CGCCGCATCTACGCAACCTCGCAGTGGCCATGTGCAGCCGCTACGACCCCATCCCTGTGTGCACCTCCCTTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147632.3 |
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| CDS CAA 72 bp | TGCACATGGCCACTGCGAGGTTGCGTAGATGCGGCGTaGCTCCCACCCACAGGAAGAGCGAATCCGTCAGCC | + |
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Preference number: 6 (lower is better) Translates to: CTWPLRGCVDAA*LPPTGRANPSA Trigger: GGCTGACGGATTCGCTCTTCCTGTGGGTGGGAGCAACGCCGCATCTACGCAACCTCGCAGTGGCCATGTGCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000124996.8 ENSMUST00000147632.3 |
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| CDS TCA 72 bp | CTCCCACCCACAGGAAGAGCGAATCCGTCAGCCGCATaGCATGAAAGTGGACCAGCTGCTCCCACAGCCTTG | + |
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Preference number: 6 (lower is better) Translates to: LPPTGRANPSAA*HESGPAAPTAL Trigger: CAAGGCTGTGGGAGCAGCTGGTCCACTTTCATGTCATGCGGCTGACGGATTCGCTCTTCCTGTGGGTGGGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000124996.8 ENSMUST00000147632.3 |
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| CDS TCA 72 bp | ACCCACAGGAAGAGCGAATCCGTCAGCCGCATGACATaGAAGTGGACCAGCTGCTCCCACAGCCTTGCACTG | + |
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Preference number: 6 (lower is better) Translates to: THRKSESVSRMT*KWTSCSHSLAL Trigger: CAGTGCAAGGCTGTGGGAGCAGCTGGTCCACTTTCATGTCATGCGGCTGACGGATTCGCTCTTCCTGTGGGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000124996.8 ENSMUST00000147632.3 |
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| CDS CAA 90 bp | GTTTGCTGGTCTTCCGGGCTAAGCGCTGAGCAAGGCCGGTGGAAGTaGTATCAGAAGTGTCTCCAAAAAGGGAGGTGCACACAGGGATGG | + |
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Preference number: 6 (lower is better) Translates to: VCWSSGLSAEQGRWK*YQKCLQKGRCTQGW Trigger: CCATCCCTGTGTGCACCTCCCTTTTTGGAGACACTTCTGATACAACTTCCACCGGCCTTGCTCAGCGCTTAGCCCGGAAGACCAGCAAAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000147632.3 |
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| CDS CCA 72 bp | TGCTGGTCTTCCGGGCTAAGCGCTGAGCAAGGCCGGTaGAAGTTGTATCAGAAGTGTCTCCAAAAAGGGAGG | + |
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Preference number: 6 (lower is better) Translates to: CWSSGLSAEQGR*KLYQKCLQKGR Trigger: CCTCCCTTTTTGGAGACACTTCTGATACAACTTCCACCGGCCTTGCTCAGCGCTTAGCCCGGAAGACCAGCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000147632.3 |
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| CDS CAA 72 bp | TCTTCCGGGCTAAGCGCTGAGCAAGGCCGGTGGAAGTaGTATCAGAAGTGTCTCCAAAAAGGGAGGTGCACA | + |
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Preference number: 6 (lower is better) Translates to: SSGLSAEQGRWK*YQKCLQKGRCT Trigger: TGTGCACCTCCCTTTTTGGAGACACTTCTGATACAACTTCCACCGGCCTTGCTCAGCGCTTAGCCCGGAAGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000147632.3 |
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| CDS TCA 72 bp | ACAAACACCTGTTTGCTGGTCTTCCGGGCTAAGCGCTaGGCAAGGCCGGTGGAAGTTGTATCAGAAGTGTCT | + |
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Preference number: 6 (lower is better) Translates to: TNTCLLVFRAKR*ARPVEVVSEVS Trigger: AGACACTTCTGATACAACTTCCACCGGCCTTGCTCAGCGCTTAGCCCGGAAGACCAGCAAACAGGTGTTTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147632.3 |
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