Pregenerated sensors for PSME3IP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031774Ensembl transcript IDs: ENSMUST00000034226.8, ENSMUST00000211833.2, ENSMUST00000212507.2, ENSMUST00000212791.2, ENSMUST00000213022.2
Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCCCTCTCTGCCCACGTTAAATCTGAGGAGCTTCCTCTGCCTGCCTaGCAGTGTGTCAGTGCCAACACACCCAGTGTCTCTCGCTCGCTC | + |
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Preference number: 1 (lower is better) Translates to: ALSAHVKSEELPLPA*QCVSANTPSVSRSL Trigger: GAGCGAGCGAGAGACACTGGGTGTGTTGGCACTGACACACTGGCAGGCAGGCAGAGGAAGCTCCTCAGATTTAACGTGGGCAGAGAGGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR TCA 90 bp | CTGCATCCCTGTTCCCTCCTCCCCCTTCCCTCCCTTCATCCTCCATaGGACAGAAACAGGCCAGAGCCTGCTGCTTTTGGCTGCTCATGG | + |
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Preference number: 1 (lower is better) Translates to: LHPCSLLPLPSLHPP*DRNRPEPAAFGCSW Trigger: CCATGAGCAGCCAAAAGCAGCAGGCTCTGGCCTGTTTCTGTCTCATGGAGGATGAAGGGAGGGAAGGGGGAGGAGGGAACAGGGATGCAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR GCA 90 bp | GATCCAGGGCCCTCTCTGCCCACGTTAAATCTGAGGAGCTTCCTCTaGCTGCCTGCCAGTGTGTCAGTGCCAACACACCCAGTGTCTCTC | + |
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Preference number: 1 (lower is better) Translates to: DPGPSLPTLNLRSFL*LPASVSVPTHPVSL Trigger: GAGAGACACTGGGTGTGTTGGCACTGACACACTGGCAGGCAGGCAGAGGAAGCTCCTCAGATTTAACGTGGGCAGAGAGGGCCCTGGATC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR GCA 90 bp | CAACAAGGTACACCAAACCCTGGCAGGCCAGCTGCTGCCTGTCCTTaGACTGTCCGTGACATTTCTGAGACAAGCCTGAACCCCGACTCC | + |
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Preference number: 1 (lower is better) Translates to: QQGTPNPGRPAAACP*TVRDISETSLNPDS Trigger: GGAGTCGGGGTTCAGGCTTGTCTCAGAAATGTCACGGACAGTGCAAGGACAGGCAGCAGCTGGCCTGCCAGGGTTTGGTGTACCTTGTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR GCA 90 bp | CCTTCCCTCCCTTCATCCTCCATGAGACAGAAACAGGCCAGAGCCTaGTGCTTTTGGCTGCTCATGGCCCAGGCGCTGTTGTGTGTGTGT | + |
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Preference number: 1 (lower is better) Translates to: PSLPSSSMRQKQARA*CFWLLMAQALLCVC Trigger: ACACACACACAACAGCGCCTGGGCCATGAGCAGCCAAAAGCAGCAGGCTCTGGCCTGTTTCTGTCTCATGGAGGATGAAGGGAGGGAAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR CCA 90 bp | GGTCATGTTCTCGTGGTCAGCTCCTTCCTACCTCCTCAGGCTGGATaGAGAGGGGAGGACATGGAAGAGTCTCTGCTCAAGGGCTGTCGT | + |
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Preference number: 1 (lower is better) Translates to: GHVLVVSSFLPPQAG*RGEDMEESLLKGCR Trigger: ACGACAGCCCTTGAGCAGAGACTCTTCCATGTCCTCCCCTCTCCATCCAGCCTGAGGAGGTAGGAAGGAGCTGACCACGAGAACATGACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR TCA 90 bp | CTGCTGCCTGTCCTTGCACTGTCCGTGACATTTCTGAGACAAGCCTaGACCCCGACTCCTCATATCAATGGGACAGGTTTGGTCATCTGC | + |
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Preference number: 1 (lower is better) Translates to: LLPVLALSVTFLRQA*TPTPHINGTGLVIC Trigger: GCAGATGACCAAACCTGTCCCATTGATATGAGGAGTCGGGGTTCAGGCTTGTCTCAGAAATGTCACGGACAGTGCAAGGACAGGCAGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR TCA 90 bp | TACCTAAACGTCTTGTTTGTCAGGAGGGAGCTGACAGGCCTGCACTaGCAGTCAGGAAAGATTAGGACTGGGAGGCTCTGCAAGGGATGG | + |
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Preference number: 1 (lower is better) Translates to: YLNVLFVRRELTGLH*QSGKIRTGRLCKGW Trigger: CCATCCCTTGCAGAGCCTCCCAGTCCTAATCTTTCCTGACTGTCAGTGCAGGCCTGTCAGCTCCCTCCTGACAAACAAGACGTTTAGGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR TCA 90 bp | AAGAGTCTCTGCTCAAGGGCTGTCGTTGGCTCACAGCCTTGTGGGTaGGGCTTGAGATTTTTACTTAAGTCACACAACACCCAGGAAGGG | + |
|
Preference number: 1 (lower is better) Translates to: KSLCSRAVVGSQPCG*GLRFLLKSHNTQEG Trigger: CCCTTCCTGGGTGTTGTGTGACTTAAGTAAAAATCTCAAGCCTCACCCACAAGGCTGTGAGCCAACGACAGCCCTTGAGCAGAGACTCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR CAA 90 bp | CCCTTCATCCTCCATGAGACAGAAACAGGCCAGAGCCTGCTGCTTTaGGCTGCTCATGGCCCAGGCGCTGTTGTGTGTGTGTTGAGGGGG | + |
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Preference number: 2 (lower is better) Translates to: PFILHETETGQSLLL*AAHGPGAVVCVLRG Trigger: CCCCCTCAACACACACACAACAGCGCCTGGGCCATGAGCAGCCAAAAGCAGCAGGCTCTGGCCTGTTTCTGTCTCATGGAGGATGAAGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR-3UTR GCA 90 bp | AGCGCTCACAGGCATCAGCGATGGGCGAAGGAAACCCACCATCTGCTGGTAGGCCTGCCAGTGTGTCAGTaGCAACACACCCAGTGTCTC | + |
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Preference number: 2 (lower is better) Translates to: SAHRHQRWAKETHHLLVGLPVCQ*QHTQCL Trigger: GAGACACTGGGTGTGTTGGCACTGACACACTGGCAG...GCCTACCAGCAGATGGTGGGTTTCCTTCGCCCATCGCTGATGCCTGTGAGCGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR-3UTR GCA 90 bp | GTGTGTCAGTGCCAACACACCCAGTGTCTCTCGCTCGCTCGCTGGCTCGCTTGTACATGGAAGAGTCTCTaGTCAAGGGCTGTCGTTGGC | + |
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Preference number: 2 (lower is better) Translates to: VCQCQHTQCLSLARWLACTWKSL*SRAVVG Trigger: GCCAACGACAGCCCTTGAGCAGAGACTCTTCCATGT...ACAAGCGAGCCAGCGAGCGAGCGAGAGACACTGGGTGTGTTGGCACTGACACAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR-3UTR GCA 90 bp | CCTGTTCCCTCCTCCCCCTTCCCTCCCTTCATCCTCCATGAGACAGAAACAGGCATGTGCAAACAGCAGTaGTTCGGTGGAGTAGAGTGC | + |
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Preference number: 2 (lower is better) Translates to: PVPSSPFPPFILHETETGMCKQQ*FGGVEC Trigger: GCACTCTACTCCACCGAAGCACTGCTGTTTGCACAT...GCCTGTTTCTGTCTCATGGAGGATGAAGGGAGGGAAGGGGGAGGAGGGAACAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR-3UTR TCA 90 bp | GGACATGGAAGAGTCTCTGCTCAAGGGCTGTCGTTGGCTCACAGCCTTGTGGGTAAATCAAGCCGAGTTTaGGCCACAAGTGGACTGAGA | + |
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Preference number: 2 (lower is better) Translates to: GHGRVSAQGLSLAHSLVGKSSRV*ATSGLR Trigger: TCTCAGTCCACTTGTGGCTCAAACTCGGCTTGATTT...ACCCACAAGGCTGTGAGCCAACGACAGCCCTTGAGCAGAGACTCTTCCATGTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR-3UTR CCA 90 bp | ATAACAGGCAGGCATGTCCCACTAGTTTGCAGTCTGAGGATTCCAGAAACTGCTAGGTACACCAAACCCTaGCAGGCCAGCTGCTGCCTG | + |
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Preference number: 2 (lower is better) Translates to: ITGRHVPLVCSLRIPETARYTKP*QASCCL Trigger: CAGGCAGCAGCTGGCCTGCCAGGGTTTGGTGTACCT...AGCAGTTTCTGGAATCCTCAGACTGCAAACTAGTGGGACATGCCTGCCTGTTAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR-3UTR CCA 90 bp | AGAAGCTACAACTGTATGTGCAAACAGCAGTGCTTCGGTGGAGTAGAGTGCAGGCTCAAGGGCTGTCGTTaGCTCACAGCCTTGTGGGTG | + |
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Preference number: 2 (lower is better) Translates to: RSYNCMCKQQCFGGVECRLKGCR*LTALWV Trigger: CACCCACAAGGCTGTGAGCCAACGACAGCCCTTGAG...CCTGCACTCTACTCCACCGAAGCACTGCTGTTTGCACATACAGTTGTAGCTTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR-3UTR TCA 90 bp | AGCGCTCACAGGCATCAGCGATGGGCGAAGGAAACCCACCATCTGCTGGTAGGCACTGAGACACATTTCTaGGTTAGGTTAAAATGTCAC | + |
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Preference number: 2 (lower is better) Translates to: SAHRHQRWAKETHHLLVGTETHF*VRLKCH Trigger: GTGACATTTTAACCTAACTCAGAAATGTGTCTCAGT...GCCTACCAGCAGATGGTGGGTTTCCTTCGCCCATCGCTGATGCCTGTGAGCGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR-3UTR TCA 90 bp | ATTTCTGAGACAAGCCTGAACCCCGACTCCTCATATCAATGGGACAGGTTTGGTTGCACAGGAAGCAGGTaGGTAAGTTTTCTGAGGGAG | + |
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Preference number: 2 (lower is better) Translates to: ISETSLNPDSSYQWDRFGCTGSR*VSFLRE Trigger: CTCCCTCAGAAAACTTACTCACCTGCTTCCTGTGCA...ACCAAACCTGTCCCATTGATATGAGGAGTCGGGGTTCAGGCTTGTCTCAGAAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR-3UTR GCA 90 bp | TCAGACTGGCTAAAAGCAGCTTCGCAGTCAGAAGCTACAACTGTATGTGCAAACTTCGGTGGAGTAGAGTaGAGGCATAACAGGCAGGCA | + |
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Preference number: 2 (lower is better) Translates to: SDWLKAASQSEATTVCANFGGVE*RHNRQA Trigger: TGCCTGCCTGTTATGCCTGCACTCTACTCCACCGAA...GTTTGCACATACAGTTGTAGCTTCTGACTGCGAAGCTGCTTTTAGCCAGTCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR-3UTR GCA 90 bp | TTCGCAGTCAGAAGCTACAACTGTATGTGCAAACAGCAGTGCTTCGGTGGAGTACATGTCCCACTAGTTTaGAGTCTGAGGATTCCAGAA | + |
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Preference number: 2 (lower is better) Translates to: FAVRSYNCMCKQQCFGGVHVPLV*SLRIPE Trigger: TTCTGGAATCCTCAGACTGCAAACTAGTGGGACATG...TACTCCACCGAAGCACTGCTGTTTGCACATACAGTTGTAGCTTCTGACTGCGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR CAA 90 bp | AAGAAACCCATTCATCTACAACAACATATGAAGCTAACGCTGCCCTaGCTTCCTGTGCTGCTAGGTAAGGAGATAAACAAGACAGCAACA | + |
|
Preference number: 2 (lower is better) Translates to: KKPIHLQQHMKLTLP*LPVLLGKEINKTAT Trigger: TGTTGCTGTCTTGTTTATCTCCTTACCTAGCAGCACAGGAAGCAAGGGCAGCGTTAGCTTCATATGTTGTTGTAGATGAATGGGTTTCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR CCA 72 bp | GGGAGGATGCCGATGCACACAGCAGCCGACGGGCAGTaGATGGAGGGAGGTCCGCTCAGAGAAGAGCTTCCA | + |
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Preference number: 3 (lower is better) Translates to: GRMPMHTAADGQ*MEGGPLREELP Trigger: TGGAAGCTCTTCTCTGAGCGGACCTCCCTCCATCCACTGCCCGTCGGCTGCTGTGTGCATCGGCATCCTCCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211833.2 |
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| 3UTR GCA 72 bp | AGGCTGGATGGAGAGGGGAGGACATGGAAGAGTCTCTaGTCAAGGGCTGTCGTTGGCTCACAGCCTTGTGGG | + |
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Preference number: 3 (lower is better) Translates to: RLDGEGRTWKSL*SRAVVGSQPCG Trigger: CCCACAAGGCTGTGAGCCAACGACAGCCCTTGAGCAGAGACTCTTCCATGTCCTCCCCTCTCCATCCAGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR CCA 72 bp | GCACCCGTGTCAATACTGGAAGGGGAGAGGAAGGGCTaGCTGAGATCCAGGGCCCTCTCTGCCCACGTTAAA | + |
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Preference number: 3 (lower is better) Translates to: APVSILEGERKG*LRSRALSAHVK Trigger: TTTAACGTGGGCAGAGAGGGCCCTGGATCTCAGCCAGCCCTTCCTCTCCCCTTCCAGTATTGACACGGGTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR TCA 72 bp | TGTTCCCTCCTCCCCCTTCCCTCCCTTCATCCTCCATaGGACAGAAACAGGCCAGAGCCTGCTGCTTTTGGC | + |
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Preference number: 3 (lower is better) Translates to: CSLLPLPSLHPP*DRNRPEPAAFG Trigger: GCCAAAAGCAGCAGGCTCTGGCCTGTTTCTGTCTCATGGAGGATGAAGGGAGGGAAGGGGGAGGAGGGAACA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR CCA 72 bp | TCAGGAAAGATTAGGACTGGGAGGCTCTGCAAGGGATaGCAGCGCTCACAGGCATCAGCGATGGGCGAAGGA | + |
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Preference number: 3 (lower is better) Translates to: SGKIRTGRLCKG*QRSQASAMGEG Trigger: TCCTTCGCCCATCGCTGATGCCTGTGAGCGCTGCCATCCCTTGCAGAGCCTCCCAGTCCTAATCTTTCCTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR-3UTR CAA 90 bp | TCATGTTCTCGTGGTCAGCTCCTTCCTACCTCCTCAGGCTGGATGGAGAGGGGAAAGCTAACGCTGCCCTaGCTTCCTGTGCTGCTAGGT | + |
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Preference number: 3 (lower is better) Translates to: SCSRGQLLPTSSGWMERGKLTLP*LPVLLG Trigger: ACCTAGCAGCACAGGAAGCAAGGGCAGCGTTAGCTT...TCCCCTCTCCATCCAGCCTGAGGAGGTAGGAAGGAGCTGACCACGAGAACATGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR GCA 72 bp | ACACCAAACCCTGGCAGGCCAGCTGCTGCCTGTCCTTaGACTGTCCGTGACATTTCTGAGACAAGCCTGAAC | + |
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Preference number: 3 (lower is better) Translates to: TPNPGRPAAACP*TVRDISETSLN Trigger: GTTCAGGCTTGTCTCAGAAATGTCACGGACAGTGCAAGGACAGGCAGCAGCTGGCCTGCCAGGGTTTGGTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR GCA 72 bp | TCATCCTCCATGAGACAGAAACAGGCCAGAGCCTGCTaGTTTTGGCTGCTCATGGCCCAGGCGCTGTTGTGT | + |
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Preference number: 3 (lower is better) Translates to: SSSMRQKQARAC*FWLLMAQALLC Trigger: ACACAACAGCGCCTGGGCCATGAGCAGCCAAAAGCAGCAGGCTCTGGCCTGTTTCTGTCTCATGGAGGATGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR GCA 72 bp | GCCCACGTTAAATCTGAGGAGCTTCCTCTGCCTGCCTaGCAGTGTGTCAGTGCCAACACACCCAGTGTCTCT | + |
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Preference number: 3 (lower is better) Translates to: AHVKSEELPLPA*QCVSANTPSVS Trigger: AGAGACACTGGGTGTGTTGGCACTGACACACTGGCAGGCAGGCAGAGGAAGCTCCTCAGATTTAACGTGGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR CCA 72 bp | TGTTCTCGTGGTCAGCTCCTTCCTACCTCCTCAGGCTaGATGGAGAGGGGAGGACATGGAAGAGTCTCTGCT | + |
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Preference number: 3 (lower is better) Translates to: CSRGQLLPTSSG*MERGGHGRVSA Trigger: AGCAGAGACTCTTCCATGTCCTCCCCTCTCCATCCAGCCTGAGGAGGTAGGAAGGAGCTGACCACGAGAACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR CCA 72 bp | GAGAGAGAAGGTGGGCAGAGGATGGTCATGTTCTCGTaGTCAGCTCCTTCCTACCTCCTCAGGCTGGATGGA | + |
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Preference number: 3 (lower is better) Translates to: EREGGQRMVMFS*SAPSYLLRLDG Trigger: TCCATCCAGCCTGAGGAGGTAGGAAGGAGCTGACCACGAGAACATGACCATCCTCTGCCCACCTTCTCTCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR CCA 72 bp | TCCATGAGACAGAAACAGGCCAGAGCCTGCTGCTTTTaGCTGCTCATGGCCCAGGCGCTGTTGTGTGTGTGT | + |
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Preference number: 3 (lower is better) Translates to: SMRQKQARACCF*LLMAQALLCVC Trigger: ACACACACACAACAGCGCCTGGGCCATGAGCAGCCAAAAGCAGCAGGCTCTGGCCTGTTTCTGTCTCATGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR CCA 72 bp | CAGTGCCAACACACCCAGTGTCTCTCGCTCGCTCGCTaGCTCGCTTGTCTCACACCCATAGGAAGGGAAAAA | + |
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Preference number: 3 (lower is better) Translates to: QCQHTQCLSLAR*LACLTPIGREK Trigger: TTTTTCCCTTCCTATGGGTGTGAGACAAGCGAGCCAGCGAGCGAGCGAGAGACACTGGGTGTGTTGGCACTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR TCA 72 bp | GTCTTGTTTGTCAGGAGGGAGCTGACAGGCCTGCACTaGCAGTCAGGAAAGATTAGGACTGGGAGGCTCTGC | + |
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Preference number: 3 (lower is better) Translates to: VLFVRRELTGLH*QSGKIRTGRLC Trigger: GCAGAGCCTCCCAGTCCTAATCTTTCCTGACTGTCAGTGCAGGCCTGTCAGCTCCCTCCTGACAAACAAGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR CCA 72 bp | GAGATAAACAAGACAGCAACAAGGTACACCAAACCCTaGCAGGCCAGCTGCTGCCTGTCCTTGCACTGTCCG | + |
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Preference number: 3 (lower is better) Translates to: EINKTATRYTKP*QASCCLSLHCP Trigger: CGGACAGTGCAAGGACAGGCAGCAGCTGGCCTGCCAGGGTTTGGTGTACCTTGTTGCTGTCTTGTTTATCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR CCA 72 bp | GAGGACATGGAAGAGTCTCTGCTCAAGGGCTGTCGTTaGCTCACAGCCTTGTGGGTGAGGCTTGAGATTTTT | + |
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Preference number: 3 (lower is better) Translates to: EDMEESLLKGCR*LTALWVRLEIF Trigger: AAAAATCTCAAGCCTCACCCACAAGGCTGTGAGCCAACGACAGCCCTTGAGCAGAGACTCTTCCATGTCCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR TCA 72 bp | GGGCTGTCGTTGGCTCACAGCCTTGTGGGTGAGGCTTaGGATTTTTACTTAAGTCACACAACACCCAGGAAG | + |
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Preference number: 3 (lower is better) Translates to: GLSLAHSLVGEA*DFYLSHTTPRK Trigger: CTTCCTGGGTGTTGTGTGACTTAAGTAAAAATCTCAAGCCTCACCCACAAGGCTGTGAGCCAACGACAGCCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR GCA 72 bp | TGTATGTGCAAACAGCAGTGCTTCGGTGGAGTAGAGTaGAGGCATAACAGGCAGGCATGTCCCACTAGTTTG | + |
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Preference number: 3 (lower is better) Translates to: CMCKQQCFGGVE*RHNRQACPTSL Trigger: CAAACTAGTGGGACATGCCTGCCTGTTATGCCTGCACTCTACTCCACCGAAGCACTGCTGTTTGCACATACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR GCA 72 bp | GCAGTCAGAAGCTACAACTGTATGTGCAAACAGCAGTaGTTCGGTGGAGTAGAGTGCAGGCATAACAGGCAG | + |
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Preference number: 3 (lower is better) Translates to: AVRSYNCMCKQQ*FGGVECRHNRQ Trigger: CTGCCTGTTATGCCTGCACTCTACTCCACCGAAGCACTGCTGTTTGCACATACAGTTGTAGCTTCTGACTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR GCA 72 bp | AGGGAGGTCCGCTCAGAGAAGAGCTTCCAAGAGACATaGAGGACGGGGCCTCTTATAGTCACCTATTATAGT | + |
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Preference number: 3 (lower is better) Translates to: REVRSEKSFQET*RTGPLIVTYYS Trigger: ACTATAATAGGTGACTATAAGAGGCCCCGTCCTGCATGTCTCTTGGAAGCTCTTCTCTGAGCGGACCTCCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211833.2 |
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| 3UTR TCA 72 bp | TGCTCAAGGGCTGTCGTTGGCTCACAGCCTTGTGGGTaGGGCTTGAGATTTTTACTTAAGTCACACAACACC | + |
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Preference number: 3 (lower is better) Translates to: CSRAVVGSQPCG*GLRFLLKSHNT Trigger: GGTGTTGTGTGACTTAAGTAAAAATCTCAAGCCTCACCCACAAGGCTGTGAGCCAACGACAGCCCTTGAGCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR TCA 72 bp | GTTAGGTTAAAATGTCACATGTGCACAGGAAGCAGGTaGGTAAGTTTTCTGAGGGAGGTGATGCCGAGGCAG | + |
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Preference number: 3 (lower is better) Translates to: VRLKCHMCTGSR*VSFLREVMPRQ Trigger: CTGCCTCGGCATCACCTCCCTCAGAAAACTTACTCACCTGCTTCCTGTGCACATGTGACATTTTAACCTAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR TCA 72 bp | CCGAGTTTGAGCCACAAGTGGACTGAGACACATTTCTaGGTTAGGTTAAAATGTCACATGTGCACAGGAAGC | + |
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Preference number: 3 (lower is better) Translates to: PSLSHKWTETHF*VRLKCHMCTGS Trigger: GCTTCCTGTGCACATGTGACATTTTAACCTAACTCAGAAATGTGTCTCAGTCCACTTGTGGCTCAAACTCGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR TCA 72 bp | TCTGCACAGGAGTATAAAGAGAAATCAAGCCGAGTTTaGGCCACAAGTGGACTGAGACACATTTCTGAGTTA | + |
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Preference number: 3 (lower is better) Translates to: SAQEYKEKSSRV*ATSGLRHISEL Trigger: TAACTCAGAAATGTGTCTCAGTCCACTTGTGGCTCAAACTCGGCTTGATTTCTCTTTATACTCCTGTGCAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR TCA 72 bp | TTTAGCATAGCTATCAGCAGTTATAGTTTCTGGCTATaGTTCAGTAAGTTTGCTTCTCTAACGTTTAGAATC | + |
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Preference number: 3 (lower is better) Translates to: FSIAISSYSFWL*FSKFASLTFRI Trigger: GATTCTAAACGTTAGAGAAGCAAACTTACTGAATCATAGCCAGAAACTATAACTGCTGATAGCTATGCTAAA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| CDS-3UTR CCA 90 bp | GACTGGGAGGCTCTGCAAGGGATGGCAGCGCTCACAGGCATCAGCGATGGGCGATGTTGGTTCGGAAGATaGAGGAGACGATCTTCCCTG | + |
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Preference number: 4 (lower is better) Translates to: DWEALQGMAALTGISDGRCWFGR*RRRSSL Trigger: CAGGGAAGATCGTCTCCTCCATCTTCCGAACCAACA...TCGCCCATCGCTGATGCCTGTGAGCGCTGCCATCCCTTGCAGAGCCTCCCAGTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| CDS-3UTR TCA 90 bp | GACTGGGAGGCTCTGCAAGGGATGGCAGCGCTCACAGGCATCAGCGATGGGCGAACTATTGCCACTCTCTaGGCTCTTATGTTTCACAGC | + |
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Preference number: 4 (lower is better) Translates to: DWEALQGMAALTGISDGRTIATL*ALMFHS Trigger: GCTGTGAAACATAAGAGCTCAGAGAGTGGCAATAGT...TCGCCCATCGCTGATGCCTGTGAGCGCTGCCATCCCTTGCAGAGCCTCCCAGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| CDS-3UTR TCA 90 bp | TGGTCATGTTCTCGTGGTCAGCTCCTTCCTACCTCCTCAGGCTGGATGGAGAGGGGTGCCTTCACTGTCTaGACTGGATTCGGAGTCACT | + |
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Preference number: 4 (lower is better) Translates to: WSCSRGQLLPTSSGWMERGAFTV*TGFGVT Trigger: AGTGACTCCGAATCCAGTTCAGACAGTGAAGGCACC...CCTCTCCATCCAGCCTGAGGAGGTAGGAAGGAGCTGACCACGAGAACATGACCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| CDS-3UTR GCA 90 bp | TCAGACTGGCTAAAAGCAGCTTCGCAGTCAGAAGCTACAACTGTATGTGCAAACCAGGGAGGATGCCGATaGACACAGCAGCCGACGGGC | + |
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Preference number: 4 (lower is better) Translates to: SDWLKAASQSEATTVCANQGGCR*TQQPTG Trigger: GCCCGTCGGCTGCTGTGTGCATCGGCATCCTCCCTG...GTTTGCACATACAGTTGTAGCTTCTGACTGCGAAGCTGCTTTTAGCCAGTCTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| CDS-3UTR CCA 90 bp | GGACATGGAAGAGTCTCTGCTCAAGGGCTGTCGTTGGCTCACAGCCTTGTGGGTGTCATACGCCTCCTCTaGACATTCTTTTGGGTCTTC | + |
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Preference number: 4 (lower is better) Translates to: GHGRVSAQGLSLAHSLVGVIRLL*TFFWVF Trigger: GAAGACCCAAAAGAATGTCCAGAGGAGGCGTATGAC...ACCCACAAGGCTGTGAGCCAACGACAGCCCTTGAGCAGAGACTCTTCCATGTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| CDS-3UTR TCA 90 bp | GCAGTGGATGGAGGGAGGTCCGCTCAGAGAAGAGCTTCCAAGAGACATGCAGGAACTATTGCCACTCTCTaGGCTCTTATGTTTCACAGC | + |
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Preference number: 4 (lower is better) Translates to: AVDGGRSAQRRASKRHAGTIATL*ALMFHS Trigger: GCTGTGAAACATAAGAGCTCAGAGAGTGGCAATAGT...TCCTGCATGTCTCTTGGAAGCTCTTCTCTGAGCGGACCTCCCTCCATCCACTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211833.2 |
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| CDS-3UTR GCA 90 bp | TTTTCTGAGGGAGGTGATGCCGAGGCAGAACTGGCATCCAACCCTCTGAGATGCTCCTCATACTCCTGCTaGTTCCTGTCTTTCTGTTCC | + |
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Preference number: 4 (lower is better) Translates to: FSEGGDAEAELASNPLRCSSYSC*FLSFCS Trigger: GGAACAGAAAGACAGGAAGCAGCAGGAGTATGAGGA...GCATCTCAGAGGGTTGGATGCCAGTTCTGCCTCGGCATCACCTCCCTCAGAAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| CDS-3UTR GCA 90 bp | ATAACAGGCAGGCATGTCCCACTAGTTTGCAGTCTGAGGATTCCAGAAACTGCTTGGATTCGGAGTCACTaGTCCCAGAGTAGGCGCCCA | + |
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Preference number: 4 (lower is better) Translates to: ITGRHVPLVCSLRIPETAWIRSH*SQSRRP Trigger: TGGGCGCCTACTCTGGGAGCAGTGACTCCGAATCCA...AGCAGTTTCTGGAATCCTCAGACTGCAAACTAGTGGGACATGCCTGCCTGTTAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| CDS-3UTR CCA 90 bp | AGAAGCTACAACTGTATGTGCAAACAGCAGTGCTTCGGTGGAGTAGAGTGCAGGCTCTGGACATTCTTTTaGGTCTTCTGGTTTTCGCAC | + |
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Preference number: 4 (lower is better) Translates to: RSYNCMCKQQCFGGVECRLWTFF*VFWFSH Trigger: GTGCGAAAACCAGAAGACCCAAAAGAATGTCCAGAG...CCTGCACTCTACTCCACCGAAGCACTGCTGTTTGCACATACAGTTGTAGCTTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| CDS-3UTR CCA 90 bp | GGTAGAACCAAGAAACCCATTCATCTACAACAACATATGAAGCTAACGCTGCCCCCTCGAGGAAGGTGTTaGTTCGGAAGATGGAGGAGA | + |
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Preference number: 4 (lower is better) Translates to: GRTKKPIHLQQHMKLTLPPRGRC*FGRWRR Trigger: TCTCCTCCATCTTCCGAACCAACACCTTCCTCGAGG...GGGCAGCGTTAGCTTCATATGTTGTTGTAGATGAATGGGTTTCTTGGTTCTACC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| CDS-3UTR GCA 90 bp | ACCAAGAAACCCATTCATCTACAACAACATATGAAGCTAACGCTGCCCTTGCTTCTGTCTTTCTGTTCCTaGAGCCGTTCGTACAGAGAC | + |
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Preference number: 4 (lower is better) Translates to: TKKPIHLQQHMKLTLPLLLSFCS*SRSYRD Trigger: GTCTCTGTACGAACGGCTGCAGGAACAGAAAGACAG...AAGCAAGGGCAGCGTTAGCTTCATATGTTGTTGTAGATGAATGGGTTTCTTGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| 3UTR CAA 72 bp | ATTCATCTACAACAACATATGAAGCTAACGCTGCCCTaGCTTCCTGTGCTGCTAGGTAAGGAGATAAACAAG | + |
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Preference number: 4 (lower is better) Translates to: IHLQQHMKLTLP*LPVLLGKEINK Trigger: CTTGTTTATCTCCTTACCTAGCAGCACAGGAAGCAAGGGCAGCGTTAGCTTCATATGTTGTTGTAGATGAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| CDS-3UTR CAA 90 bp | GACTGGGAGGCTCTGCAAGGGATGGCAGCGCTCACAGGCATCAGCGATGGGCGAGCAGGACGGGGCCTCTaGAGCCTTGTCATCTGGGTC | + |
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Preference number: 5 (lower is better) Translates to: DWEALQGMAALTGISDGRAGRGL*SLVIWV Trigger: GACCCAGATGACAAGGCTCAAGAGGCCCCGTCCTGC...TCGCCCATCGCTGATGCCTGTGAGCGCTGCCATCCCTTGCAGAGCCTCCCAGTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| CDS CCA 90 bp | CCCAAGCCAGGGAGGATGCCGATGCACACAGCAGCCGACGGGCAGTaGATGGAGGGAGGTCCGCTCAGAGAAGAGCTTCCAAGAGACATG | + |
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Preference number: 5 (lower is better) Translates to: PKPGRMPMHTAADGQ*MEGGPLREELPRDM Trigger: CATGTCTCTTGGAAGCTCTTCTCTGAGCGGACCTCCCTCCATCCACTGCCCGTCGGCTGCTGTGTGCATCGGCATCCTCCCTGGCTTGGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| CDS GCA 90 bp | AGTGGATGGAGGGAGGTCCGCTCAGAGAAGAGCTTCCAAGAGACATaGAGGACGGGGCCTCTTGAGCCTTGTCATCTGGGTCGGGGTCTG | + |
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Preference number: 5 (lower is better) Translates to: SGWREVRSEKSFQET*RTGPLEPCHLGRGL Trigger: CAGACCCCGACCCAGATGACAAGGCTCAAGAGGCCCCGTCCTGCATGTCTCTTGGAAGCTCTTCTCTGAGCGGACCTCCCTCCATCCACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| CDS-3UTR CAA 90 bp | GGTCATGTTCTCGTGGTCAGCTCCTTCCTACCTCCTCAGGCTGGATGGAGAGGGGCCTCGAGGAAGGTGTaGGTTCGGAAGATGGAGGAG | + |
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Preference number: 5 (lower is better) Translates to: GHVLVVSSFLPPQAGWRGASRKV*VRKMEE Trigger: CTCCTCCATCTTCCGAACCAACACCTTCCTCGAGGC...CCCTCTCCATCCAGCCTGAGGAGGTAGGAAGGAGCTGACCACGAGAACATGACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| CDS-3UTR CAA 90 bp | GACTGGGAGGCTCTGCAAGGGATGGCAGCGCTCACAGGCATCAGCGATGGGCGAGCAGAAATTCCAACCTaGTTGAGATTACTTCTGTAC | + |
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Preference number: 5 (lower is better) Translates to: DWEALQGMAALTGISDGRAEIPT*LRLLLY Trigger: GTACAGAAGTAATCTCAACAAGGTTGGAATTTCTGC...TCGCCCATCGCTGATGCCTGTGAGCGCTGCCATCCCTTGCAGAGCCTCCCAGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| CDS-3UTR CAA 90 bp | GCTGCCTGTCCTTGCACTGTCCGTGACATTTCTGAGACAAGCCTGAACCCCGACCCTCTGGACATTCTTTaGGGTCTTCTGGTTTTCGCA | + |
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Preference number: 5 (lower is better) Translates to: AACPCTVRDISETSLNPDPLDIL*GLLVFA Trigger: TGCGAAAACCAGAAGACCCAAAAGAATGTCCAGAGG...GTCGGGGTTCAGGCTTGTCTCAGAAATGTCACGGACAGTGCAAGGACAGGCAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| CDS-3UTR CAA 90 bp | CAGCAACAAGGTACACCAAACCCTGGCAGGCCAGCTGCTGCCTGTCCTTGCACTGAAATTCCAACCTTGTaGAGATTACTTCTGTACTCC | + |
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Preference number: 5 (lower is better) Translates to: QQQGTPNPGRPAAACPCTEIPTL*RLLLYS Trigger: GGAGTACAGAAGTAATCTCAACAAGGTTGGAATTTC...AGTGCAAGGACAGGCAGCAGCTGGCCTGCCAGGGTTTGGTGTACCTTGTTGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034226.8 |
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| CDS TCA 72 bp | CTACTTCTTTATTTTCTGCAGAAATTCCAACCTTGTTaGGATTACTTCTGTACTCCTTCAGTTCCTCTAGTT | + |
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Preference number: 6 (lower is better) Translates to: LLLYFLQKFQPC*DYFCTPSVPLV Trigger: AACTAGAGGAACTGAAGGAGTACAGAAGTAATCTCAACAAGGTTGGAATTTCTGCAGAAAATAAAGAAGTAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000034226.8 ENSMUST00000212507.2 ENSMUST00000212791.2 ENSMUST00000213022.2 |
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| CDS CAA 72 bp | TCTACTTCTTTATTTTCTGCAGAAATTCCAACCTTGTaGAGATTACTTCTGTACTCCTTCAGTTCCTCTAGT | + |
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Preference number: 6 (lower is better) Translates to: STSLFSAEIPTL*RLLLYSFSSSS Trigger: ACTAGAGGAACTGAAGGAGTACAGAAGTAATCTCAACAAGGTTGGAATTTCTGCAGAAAATAAAGAAGTAGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000034226.8 ENSMUST00000212507.2 ENSMUST00000212791.2 ENSMUST00000213022.2 |
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| CDS CAA 72 bp | TTCTCTACTTCTTTATTTTCTGCAGAAATTCCAACCTaGTTGAGATTACTTCTGTACTCCTTCAGTTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: FSTSLFSAEIPT*LRLLLYSFSSS Trigger: AGAGGAACTGAAGGAGTACAGAAGTAATCTCAACAAGGTTGGAATTTCTGCAGAAAATAAAGAAGTAGAGAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000034226.8 ENSMUST00000212507.2 ENSMUST00000212791.2 ENSMUST00000213022.2 |
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