Pregenerated sensors for PSME3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078652Ensembl transcript IDs: ENSMUST00000019470.14, ENSMUST00000142640.8, ENSMUST00000151385.2
Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGAAACATTTCCCAAAGGGAAAGCACAGCGAGGAGCAGCAGCCTCTaGACCTCACAGCCGGCCGCTCCCCAGCCAGCGCACATGCTGGCC | + |
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Preference number: 1 (lower is better) Translates to: RNISQRESTARSSSL*TSQPAAPQPAHMLA Trigger: GGCCAGCATGTGCGCTGGCTGGGGAGCGGCCGGCTGTGAGGTGCAGAGGCTGCTGCTCCTCGCTGTGCTTTCCCTTTGGGAAATGTTTCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR GCA 90 bp | GCTGGAAGGGATCTGAGGGTGGATAGGTGCACTGCCCAACGAAAATaGGATTGGTTTGTTACTGAGCACTATTCTTGGGAAGAGAGCATC | + |
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Preference number: 1 (lower is better) Translates to: AGRDLRVDRCTAQRK*DWFVTEHYSWEESI Trigger: GATGCTCTCTTCCCAAGAATAGTGCTCAGTAACAAACCAATCGCATTTTCGTTGGGCAGTGCACCTATCCACCCTCAGATCCCTTCCAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR CCA 90 bp | ACTGCCCAACGAAAATGCGATTGGTTTGTTACTGAGCACTATTCTTaGGAAGAGAGCATCCCGCATCCCGCCTCCTTTCCTACAGAATGC | + |
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Preference number: 1 (lower is better) Translates to: TAQRKCDWFVTEHYS*EESIPHPASFPTEC Trigger: GCATTCTGTAGGAAAGGAGGCGGGATGCGGGATGCTCTCTTCCCAAGAATAGTGCTCAGTAACAAACCAATCGCATTTTCGTTGGGCAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR CCA 90 bp | AGGGATCTGAGGGTGGATAGGTGCACTGCCCAACGAAAATGCGATTaGTTTGTTACTGAGCACTATTCTTGGGAAGAGAGCATCCCGCAT | + |
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Preference number: 1 (lower is better) Translates to: RDLRVDRCTAQRKCD*FVTEHYSWEESIPH Trigger: ATGCGGGATGCTCTCTTCCCAAGAATAGTGCTCAGTAACAAACCAATCGCATTTTCGTTGGGCAGTGCACCTATCCACCCTCAGATCCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR TCA 90 bp | TACATTATCAGAAGAGGGTGGGCCTGGGACTTTTGCCTGGGTGGATaGCTAAGACAACTATCACCTGCTGAGATGTTTGTATGTGAAGGG | + |
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Preference number: 1 (lower is better) Translates to: YIIRRGWAWDFCLGG*LRQLSPAEMFVCEG Trigger: CCCTTCACATACAAACATCTCAGCAGGTGATAGTTGTCTTAGTCATCCACCCAGGCAAAAGTCCCAGGCCCACCCTCTTCTGATAATGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR CCA 90 bp | TATCACCTGCTGAGATGTTTGTATGTGAAGGGCTTGAGGGAGTGGTaGTGCAGGAAGGAAGGTATGTTCTATAATGGAGCAGGAAGCATG | + |
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Preference number: 1 (lower is better) Translates to: YHLLRCLYVKGLREW*CRKEGMFYNGAGSM Trigger: CATGCTTCCTGCTCCATTATAGAACATACCTTCCTTCCTGCACCACCACTCCCTCAAGCCCTTCACATACAAACATCTCAGCAGGTGATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR CCA 90 bp | AACTATCACCTGCTGAGATGTTTGTATGTGAAGGGCTTGAGGGAGTaGTGGTGCAGGAAGGAAGGTATGTTCTATAATGGAGCAGGAAGC | + |
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Preference number: 1 (lower is better) Translates to: NYHLLRCLYVKGLRE*WCRKEGMFYNGAGS Trigger: GCTTCCTGCTCCATTATAGAACATACCTTCCTTCCTGCACCACCACTCCCTCAAGCCCTTCACATACAAACATCTCAGCAGGTGATAGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR TCA 90 bp | GTACCTCTGGAAGATTCAAGAGAGGAGGCAACTCTTCTATGGGTTTaGCCTTCGCAGCATATTAACACACACACACGAACACACACACAC | + |
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Preference number: 1 (lower is better) Translates to: VPLEDSREEATLLWV*PSQHINTHTRTHTH Trigger: GTGTGTGTGTGTTCGTGTGTGTGTGTTAATATGCTGCGAAGGTCAAACCCATAGAAGAGTTGCCTCCTCTCTTGAATCTTCCAGAGGTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR-3UTR GCA 90 bp | ACTGAGCACTATTCTTGGGAAGAGAGCATCCCGCATCCCGCCTCCTTTCCTACAAGGAGCAGCAGCCTCTaGACCTCACAGCCGGCCGCT | + |
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Preference number: 2 (lower is better) Translates to: TEHYSWEESIPHPASFPTRSSSL*TSQPAA Trigger: AGCGGCCGGCTGTGAGGTGCAGAGGCTGCTGCTCCT...TGTAGGAAAGGAGGCGGGATGCGGGATGCTCTCTTCCCAAGAATAGTGCTCAGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR-3UTR TCA 90 bp | TCAGCTGGAAGGGATCTGAGGGTGGATAGGTGCACTGCCCAACGAAAATGCGATAGGCAATGTCGGTCTTaGGCCAGACTCACAAAGTCC | + |
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Preference number: 2 (lower is better) Translates to: SAGRDLRVDRCTAQRKCDRQCRS*ARLTKS Trigger: GGACTTTGTGAGTCTGGCTCAAGACCGACATTGCCT...ATCGCATTTTCGTTGGGCAGTGCACCTATCCACCCTCAGATCCCTTCCAGCTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR-3UTR CCA 90 bp | TGCGATTGGTTTGTTACTGAGCACTATTCTTGGGAAGAGAGCATCCCGCATCCCAGAAGAGGGTGGGCCTaGGACTTTTGCCTGGGTGGA | + |
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Preference number: 2 (lower is better) Translates to: CDWFVTEHYSWEESIPHPRRGWA*DFCLGG Trigger: TCCACCCAGGCAAAAGTCCCAGGCCCACCCTCTTCT...GGGATGCGGGATGCTCTCTTCCCAAGAATAGTGCTCAGTAACAAACCAATCGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR-3UTR TCA 90 bp | TCAGCTGGAAGGGATCTGAGGGTGGATAGGTGCACTGCCCAACGAAAATGCGATTCCCAGGTGGAAATATaGTTTGGGATTGGAAGACGG | + |
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Preference number: 2 (lower is better) Translates to: SAGRDLRVDRCTAQRKCDSQVEI*FGIGRR Trigger: CCGTCTTCCAATCCCAAATCATATTTCCACCTGGGA...ATCGCATTTTCGTTGGGCAGTGCACCTATCCACCCTCAGATCCCTTCCAGCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR-3UTR CCA 90 bp | GGAAGCCCTAAGGCATCACCTGGGCAGGCAAGGAGGACCCAAAGTCCCACAGAATATGTTGCACAAACCTaGAGTTCTCCAGAAATTAGG | + |
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Preference number: 2 (lower is better) Translates to: GSPKASPGQARRTQSPTEYVAQT*SSPEIR Trigger: CCTAATTTCTGGAGAACTCCAGGTTTGTGCAACATA...TTCTGTGGGACTTTGGGTCCTCCTTGCCTGCCCAGGTGATGCCTTAGGGCTTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR-3UTR TCA 90 bp | TCAGCTGGAAGGGATCTGAGGGTGGATAGGTGCACTGCCCAACGAAAATGCGATTTTTGCCTGGGTGGATaGCTAAGACAACTATCACCT | + |
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Preference number: 2 (lower is better) Translates to: SAGRDLRVDRCTAQRKCDFCLGG*LRQLSP Trigger: AGGTGATAGTTGTCTTAGTCATCCACCCAGGCAAAA...ATCGCATTTTCGTTGGGCAGTGCACCTATCCACCCTCAGATCCCTTCCAGCTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR-3UTR CCA 90 bp | AATGCGATTGGTTTGTTACTGAGCACTATTCTTGGGAAGAGAGCATCCCGCATCGGCTTGAGGGAGTGGTaGTGCAGGAAGGAAGGTATG | + |
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Preference number: 2 (lower is better) Translates to: NAIGLLLSTILGKRASRIGLREW*CRKEGM Trigger: CATACCTTCCTTCCTGCACCACCACTCCCTCAAGCC...GATGCGGGATGCTCTCTTCCCAAGAATAGTGCTCAGTAACAAACCAATCGCATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR-3UTR CCA 90 bp | ACTGAGCACTATTCTTGGGAAGAGAGCATCCCGCATCCCGCCTCCTTTCCTACAGGTGGAAATATGATTTaGGATTGGAAGACGGAGAGG | + |
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Preference number: 2 (lower is better) Translates to: TEHYSWEESIPHPASFPTGGNMI*DWKTER Trigger: CCTCTCCGTCTTCCAATCCCAAATCATATTTCCACC...TGTAGGAAAGGAGGCGGGATGCGGGATGCTCTCTTCCCAAGAATAGTGCTCAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR-3UTR TCA 90 bp | TGGATAGGTGCACTGCCCAACGAAAATGCGATTGGTTTGTTACTGAGCACTATTAAGTCAAATAGACACTaGGAGTCAGTCACTGGCAGG | + |
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Preference number: 2 (lower is better) Translates to: WIGALPNENAIGLLLSTIKSNRH*ESVTGR Trigger: CCTGCCAGTGACTGACTCTCAGTGTCTATTTGACTT...AATAGTGCTCAGTAACAAACCAATCGCATTTTCGTTGGGCAGTGCACCTATCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR-3UTR GCA 90 bp | AATGCGATTGGTTTGTTACTGAGCACTATTCTTGGGAAGAGAGCATCCCGCATCATACACATGAATTACTaGTTTCCCTGGAAGCACAAT | + |
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Preference number: 2 (lower is better) Translates to: NAIGLLLSTILGKRASRIIHMNY*FPWKHN Trigger: ATTGTGCTTCCAGGGAAAGCAGTAATTCATGTGTAT...GATGCGGGATGCTCTCTTCCCAAGAATAGTGCTCAGTAACAAACCAATCGCATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR-3UTR CCA 90 bp | TTTCCCTGGAAGCACAATACTATAAATACGAGAAACATTTCCCAAAGGGAAAGCGGACTTTTGCCTGGGTaGATGACTAAGACAACTATC | + |
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Preference number: 2 (lower is better) Translates to: FPWKHNTINTRNISQRESGLLPG*MTKTTI Trigger: GATAGTTGTCTTAGTCATCCACCCAGGCAAAAGTCC...GCTTTCCCTTTGGGAAATGTTTCTCGTATTTATAGTATTGTGCTTCCAGGGAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR-3UTR GCA 90 bp | TTTCCCTGGAAGCACAATACTATAAATACGAGAAACATTTCCCAAAGGGAAAGCCAGAGGACCAGCTTTTaGATAACACCAAAAAGAACC | + |
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Preference number: 2 (lower is better) Translates to: FPWKHNTINTRNISQRESQRTSF*ITPKRT Trigger: GGTTCTTTTTGGTGTTATGCAAAAGCTGGTCCTCTG...GCTTTCCCTTTGGGAAATGTTTCTCGTATTTATAGTATTGTGCTTCCAGGGAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR GCA 72 bp | GCACCTCACAGCCGGCCGCTCCCCAGCCAGCGCACATaGTGGCCTAGGAGAAGACAAGTGCGGGCCAGAGGA | + |
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Preference number: 3 (lower is better) Translates to: APHSRPLPSQRT*WPRRRQVRARG Trigger: TCCTCTGGCCCGCACTTGTCTTCTCCTAGGCCAGCATGTGCGCTGGCTGGGGAGCGGCCGGCTGTGAGGTGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR CCA 72 bp | CCTCACAGCCGGCCGCTCCCCAGCCAGCGCACATGCTaGCCTAGGAGAAGACAAGTGCGGGCCAGAGGACCA | + |
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Preference number: 3 (lower is better) Translates to: PHSRPLPSQRTC*PRRRQVRARGP Trigger: TGGTCCTCTGGCCCGCACTTGTCTTCTCCTAGGCCAGCATGTGCGCTGGCTGGGGAGCGGCCGGCTGTGAGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR CCA 72 bp | TCGCCACAGTCAGGCTCAGAGCGGGATGGATGTAGGTaGGAAGCCCTAAGGCATCACCTGGGCAGGCAAGGA | + |
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Preference number: 3 (lower is better) Translates to: SPQSGSERDGCR*EALRHHLGRQG Trigger: TCCTTGCCTGCCCAGGTGATGCCTTAGGGCTTCCCACCTACATCCATCCCGCTCTGAGCCTGACTGTGGCGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR GCA 72 bp | CCAGCCAGCGCACATGCTGGCCTAGGAGAAGACAAGTaGGGGCCAGAGGACCAGCTTTTGCATAACACCAAA | + |
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Preference number: 3 (lower is better) Translates to: PASAHAGLGEDK*GPEDQLLHNTK Trigger: TTTGGTGTTATGCAAAAGCTGGTCCTCTGGCCCGCACTTGTCTTCTCCTAGGCCAGCATGTGCGCTGGCTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR CCA 72 bp | CTGCTGCTCGGCTCTCGGTTCTCCTTCAGCTTACCCTaGCACCAACTGCTACATTATCAGAAGAGGGTGGGC | + |
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Preference number: 3 (lower is better) Translates to: LLLGSRFSFSLP*HQLLHYQKRVG Trigger: GCCCACCCTCTTCTGATAATGTAGCAGTTGGTGCCAGGGTAAGCTGAAGGAGAACCGAGAGCCGAGCAGCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR TCA 72 bp | GACCCAAAGTCCCACAGAAACGAGACACTAGCCTTGTaGCAAGAGATGTCCCTTCCACCTCCACTCCCCCTG | + |
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Preference number: 3 (lower is better) Translates to: DPKSHRNETLAL*QEMSLPPPLPL Trigger: CAGGGGGAGTGGAGGTGGAAGGGACATCTCTTGTCACAAGGCTAGTGTCTCGTTTCTGTGGGACTTTGGGTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR GCA 72 bp | GCTCTCGGTTCTCCTTCAGCTTACCCTGGCACCAACTaGTACATTATCAGAAGAGGGTGGGCCTGGGACTTT | + |
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Preference number: 3 (lower is better) Translates to: ALGSPSAYPGTN*YIIRRGWAWDF Trigger: AAAGTCCCAGGCCCACCCTCTTCTGATAATGTAGCAGTTGGTGCCAGGGTAAGCTGAAGGAGAACCGAGAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR-3UTR CAA 90 bp | GGCACCAACTGCTACATTATCAGAAGAGGGTGGGCCTGGGACTTTTGCCTGGGTAAGGCAATGTCGGTCTaGAGCCAGACTCACAAAGTC | + |
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Preference number: 3 (lower is better) Translates to: GTNCYIIRRGWAWDFCLGKAMSV*SQTHKV Trigger: GACTTTGTGAGTCTGGCTCAAGACCGACATTGCCTT...ACCCAGGCAAAAGTCCCAGGCCCACCCTCTTCTGATAATGTAGCAGTTGGTGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR GCA 72 bp | AGGGGCTCAGCTGGAAGGGATCTGAGGGTGGATAGGTaGACTGCCCAACGAAAATGCGATTGGTTTGTTACT | + |
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Preference number: 3 (lower is better) Translates to: RGSAGRDLRVDR*TAQRKCDWFVT Trigger: AGTAACAAACCAATCGCATTTTCGTTGGGCAGTGCACCTATCCACCCTCAGATCCCTTCCAGCTGAGCCCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR CCA 72 bp | CCACAATTACGCTTGTGCCAGTATGTTGCACAAACCTaGAGTTCTCCAGAAATTAGGACAGGCTGGGTGGGG | + |
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Preference number: 3 (lower is better) Translates to: PQLRLCQYVAQT*SSPEIRTGWVG Trigger: CCCCACCCAGCCTGTCCTAATTTCTGGAGAACTCCAGGTTTGTGCAACATACTGGCACAAGCGTAATTGTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR TCA 72 bp | GTGCACTGCCCAACGAAAATGCGATTGGTTTGTTACTaGGCACTATTCTTGGGAAGAGAGCATCCCGCATCC | + |
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Preference number: 3 (lower is better) Translates to: VHCPTKMRLVCY*ALFLGREHPAS Trigger: GGATGCGGGATGCTCTCTTCCCAAGAATAGTGCTCAGTAACAAACCAATCGCATTTTCGTTGGGCAGTGCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR CCA 72 bp | CGAAAATGCGATTGGTTTGTTACTGAGCACTATTCTTaGGAAGAGAGCATCCCGCATCCCGCCTCCTTTCCT | + |
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Preference number: 3 (lower is better) Translates to: RKCDWFVTEHYS*EESIPHPASFP Trigger: AGGAAAGGAGGCGGGATGCGGGATGCTCTCTTCCCAAGAATAGTGCTCAGTAACAAACCAATCGCATTTTCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR CCA 72 bp | AGGGTGGATAGGTGCACTGCCCAACGAAAATGCGATTaGTTTGTTACTGAGCACTATTCTTGGGAAGAGAGC | + |
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Preference number: 3 (lower is better) Translates to: RVDRCTAQRKCD*FVTEHYSWEES Trigger: GCTCTCTTCCCAAGAATAGTGCTCAGTAACAAACCAATCGCATTTTCGTTGGGCAGTGCACCTATCCACCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR-3UTR CAA 90 bp | CTGGAAGCACAATACTATAAATACGAGAAACATTTCCCAAAGGGAAAGCACAGCTTGTATGTGAAGGGCTaGAGGGAGTGGTGGTGCAGG | + |
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Preference number: 3 (lower is better) Translates to: LEAQYYKYEKHFPKGKHSLYVKG*REWWCR Trigger: CCTGCACCACCACTCCCTCAAGCCCTTCACATACAA...GCTGTGCTTTCCCTTTGGGAAATGTTTCTCGTATTTATAGTATTGTGCTTCCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR GCA 72 bp | GATCTGAGGGTGGATAGGTGCACTGCCCAACGAAAATaGGATTGGTTTGTTACTGAGCACTATTCTTGGGAA | + |
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Preference number: 3 (lower is better) Translates to: DLRVDRCTAQRK*DWFVTEHYSWE Trigger: TTCCCAAGAATAGTGCTCAGTAACAAACCAATCGCATTTTCGTTGGGCAGTGCACCTATCCACCCTCAGATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR TCA 72 bp | GAAGATTCAAGAGAGGAGGCAACTCTTCTATGGGTTTaGCCTTCGCAGCATATTAACACACACACACGAACA | + |
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Preference number: 3 (lower is better) Translates to: EDSREEATLLWV*PSQHINTHTRT Trigger: TGTTCGTGTGTGTGTGTTAATATGCTGCGAAGGTCAAACCCATAGAAGAGTTGCCTCCTCTCTTGAATCTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR CCA 72 bp | ACACACACACGTATACACATGAATTACTGCTTTCCCTaGAAGCACAATACTATAAATACGAGAAACATTTCC | + |
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Preference number: 3 (lower is better) Translates to: THTRIHMNYCFP*KHNTINTRNIS Trigger: GGAAATGTTTCTCGTATTTATAGTATTGTGCTTCCAGGGAAAGCAGTAATTCATGTGTATACGTGTGTGTGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| CDS-3UTR GCA 90 bp | TGTAGGTGGGAAGCCCTAAGGCATCACCTGGGCAGGCAAGGAGGACCCAAAGTCTCAGTACAGTGTCTCTaGATTGCTGCTCCGGGGCCG | + |
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Preference number: 4 (lower is better) Translates to: CRWEALRHHLGRQGGPKVSVQCL*IAAPGP Trigger: CGGCCCCGGAGCAGCAATGCAGAGACACTGTACTGA...GACTTTGGGTCCTCCTTGCCTGCCCAGGTGATGCCTTAGGGCTTCCCACCTACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| CDS-3UTR TCA 90 bp | GACCCCTCGCCACAGTCAGGCTCAGAGCGGGATGGATGTAGGTGGGAAGCCCTATCATGTCATGGAGAGTaGCATACTGATTCCTCAGCT | + |
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Preference number: 4 (lower is better) Translates to: DPSPQSGSERDGCRWEALSCHGE*HTDSSA Trigger: AGCTGAGGAATCAGTATGTCACTCTCCATGACATGA...TAGGGCTTCCCACCTACATCCATCCCGCTCTGAGCCTGACTGTGGCGAGGGGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| CDS-3UTR TCA 90 bp | TGGCACCAACTGCTACATTATCAGAAGAGGGTGGGCCTGGGACTTTTGCCTGGGCTGGGAATCAACAGCTaGACCCACATTTTGACCGTG | + |
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Preference number: 4 (lower is better) Translates to: WHQLLHYQKRVGLGLLPGLGINS*THILTV Trigger: CACGGTCAAAATGTGGGTTCAGCTGTTGATTCCCAG...CCCAGGCAAAAGTCCCAGGCCCACCCTCTTCTGATAATGTAGCAGTTGGTGCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| CDS-3UTR TCA 90 bp | CTAAGGCATCACCTGGGCAGGCAAGGAGGACCCAAAGTCCCACAGAAACGAGACTGCTCCGGGGCCGTTTaGTCTTCTCAATGTTTTTCA | + |
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Preference number: 4 (lower is better) Translates to: LRHHLGRQGGPKVPQKRDCSGAV*SSQCFS Trigger: TGAAAAACATTGAGAAGATCAAACGGCCCCGGAGCA...GTCTCGTTTCTGTGGGACTTTGGGTCCTCCTTGCCTGCCCAGGTGATGCCTTAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| CDS-3UTR TCA 90 bp | TCAGCTGGAAGGGATCTGAGGGTGGATAGGTGCACTGCCCAACGAAAATGCGATTTGAGCTTCACTTCCTaGTCCACCTTCAGCAACGAG | + |
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Preference number: 4 (lower is better) Translates to: SAGRDLRVDRCTAQRKCDLSFTS*STFSNE Trigger: CTCGTTGCTGAAGGTGGATCAGGAAGTGAAGCTCAA...ATCGCATTTTCGTTGGGCAGTGCACCTATCCACCCTCAGATCCCTTCCAGCTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| CDS-3UTR TCA 90 bp | AACACCAAAAAGAACCTGAGCCACAGAGGGAAGGCCTTCATGAGCCCTCTGCTGTCTCATCAATCTCTGTaGCAGTGCGGCGATAGTCCT | + |
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Preference number: 4 (lower is better) Translates to: NTKKNLSHRGKAFMSPLLSHQSL*QCGDSP Trigger: AGGACTATCGCCGCACTGTCACAGAGATTGATGAGA...CAGCAGAGGGCTCATGAAGGCCTTCCCTCTGTGGCTCAGGTTCTTTTTGGTGTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| CDS-3UTR CCA 90 bp | CACTATTCTTGGGAAGAGAGCATCCCGCATCCCGCCTCCTTTCCTACAGAATGCTGCGCTTCTTGTAAGTaGGACCATCCAGTCCATCGT | + |
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Preference number: 4 (lower is better) Translates to: HYSWEESIPHPASFPTECCASCK*DHPVHR Trigger: ACGATGGACTGGATGGTCCCACTTACAAGAAGCGCA...GCATTCTGTAGGAAAGGAGGCGGGATGCGGGATGCTCTCTTCCCAAGAATAGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| CDS-3UTR GCA 90 bp | TACGAGAAACATTTCCCAAAGGGAAAGCACAGCGAGGAGCAGCAGCCTCTGCACCCACAAGCTGCTGGTTaGTTTTCAACATCCCATTGG | + |
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Preference number: 4 (lower is better) Translates to: YEKHFPKGKHSEEQQPLHPQAAG*FSTSHW Trigger: CCAATGGGATGTTGAAAAGCAACCAGCAGCTTGTGG...GTGCAGAGGCTGCTGCTCCTCGCTGTGCTTTCCCTTTGGGAAATGTTTCTCGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| CDS-3UTR GCA 90 bp | GGAAGCCCTAAGGCATCACCTGGGCAGGCAAGGAGGACCCAAAGTCCCACAGAAATAATGTCCACAAGCTaGTGGTTGCTTTTCAACATC | + |
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Preference number: 4 (lower is better) Translates to: GSPKASPGQARRTQSPTEIMSTS*WLLFNI Trigger: GATGTTGAAAAGCAACCAGCAGCTTGTGGACATTAT...TTCTGTGGGACTTTGGGTCCTCCTTGCCTGCCCAGGTGATGCCTTAGGGCTTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| CDS-3UTR CCA 90 bp | TGGCACCAACTGCTACATTATCAGAAGAGGGTGGGCCTGGGACTTTTGCCTGGGGCATCACAAACACCTTaGTTCCTTGAAAGGCCTCTT | + |
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Preference number: 4 (lower is better) Translates to: WHQLLHYQKRVGLGLLPGASQTP*FLERPL Trigger: AAGAGGCCTTTCAAGGAACCAAGGTGTTTGTGATGC...CCCAGGCAAAAGTCCCAGGCCCACCCTCTTCTGATAATGTAGCAGTTGGTGCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR CAA 72 bp | CTGCTACATTATCAGAAGAGGGTGGGCCTGGGACTTTaGCCTGGGTGGATGACTAAGACAACTATCACCTGC | + |
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Preference number: 4 (lower is better) Translates to: LLHYQKRVGLGL*PGWMTKTTITC Trigger: GCAGGTGATAGTTGTCTTAGTCATCCACCCAGGCAAAAGTCCCAGGCCCACCCTCTTCTGATAATGTAGCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| CDS-3UTR TCA 90 bp | AATGCGATTGGTTTGTTACTGAGCACTATTCTTGGGAAGAGAGCATCCCGCATCCATCGTGGCTATTGGTaGGGAGAATGGGGTCAGGGA | + |
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Preference number: 4 (lower is better) Translates to: NAIGLLLSTILGKRASRIHRGYW*GEWGQG Trigger: TCCCTGACCCCATTCTCCTCACCAATAGCCACGATG...GATGCGGGATGCTCTCTTCCCAAGAATAGTGCTCAGTAACAAACCAATCGCATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| CDS-3UTR TCA 90 bp | ACTGAGCACTATTCTTGGGAAGAGAGCATCCCGCATCCCGCCTCCTTTCCTACAAACACCTTGGTTCCTTaGAAGGCCTCTTCACATTCA | + |
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Preference number: 4 (lower is better) Translates to: TEHYSWEESIPHPASFPTNTLVP*KASSHS Trigger: TGAATGTGAAGAGGCCTTTCAAGGAACCAAGGTGTT...TGTAGGAAAGGAGGCGGGATGCGGGATGCTCTCTTCCCAAGAATAGTGCTCAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| CDS-3UTR CCA 90 bp | CACTATTCTTGGGAAGAGAGCATCCCGCATCCCGCCTCCTTTCCTACAGAATGCATGTCCACAAGCTGCTaGTTGCTTTTCAACATCCCA | + |
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Preference number: 4 (lower is better) Translates to: HYSWEESIPHPASFPTECMSTSC*LLFNIP Trigger: TGGGATGTTGAAAAGCAACCAGCAGCTTGTGGACAT...GCATTCTGTAGGAAAGGAGGCGGGATGCGGGATGCTCTCTTCCCAAGAATAGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| CDS-3UTR CCA 90 bp | ACTGAGCACTATTCTTGGGAAGAGAGCATCCCGCATCCCGCCTCCTTTCCTACATTTTCAACATCCCATTaGGCATCACAAACACCTTGG | + |
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Preference number: 4 (lower is better) Translates to: TEHYSWEESIPHPASFPTFSTSH*ASQTPW Trigger: CCAAGGTGTTTGTGATGCCCAATGGGATGTTGAAAA...TGTAGGAAAGGAGGCGGGATGCGGGATGCTCTCTTCCCAAGAATAGTGCTCAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| CDS-3UTR GCA 90 bp | TGGATAGGTGCACTGCCCAACGAAAATGCGATTGGTTTGTTACTGAGCACTATTCTGGTCCAGGTAAGATaGGGCTTCACTCTCCACAGT | + |
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Preference number: 4 (lower is better) Translates to: WIGALPNENAIGLLLSTILVQVR*GFTLHS Trigger: ACTGTGGAGAGTGAAGCCGCATCTTACCTGGACCAG...AATAGTGCTCAGTAACAAACCAATCGCATTTTCGTTGGGCAGTGCACCTATCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR CAA 72 bp | TGGATAGGTGCACTGCCCAACGAAAATGCGATTGGTTaGTTACTGAGCACTATTCTTGGGAAGAGAGCATCC | + |
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Preference number: 4 (lower is better) Translates to: WIGALPNENAIG*LLSTILGKRAS Trigger: GGATGCTCTCTTCCCAAGAATAGTGCTCAGTAACAAACCAATCGCATTTTCGTTGGGCAGTGCACCTATCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| CDS-3UTR GCA 90 bp | GATAGTCATGTAACAAACCAAGGCAATGTCGGTCTTGAGCCAGACTCACAAAGTCACATTCATCCAACCTaGGCTTCTTGTAAGTGGGAC | + |
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Preference number: 4 (lower is better) Translates to: DSHVTNQGNVGLEPDSQSHIHPT*ASCKWD Trigger: GTCCCACTTACAAGAAGCGCAGGTTGGATGAATGTG...ACTTTGTGAGTCTGGCTCAAGACCGACATTGCCTTGGTTTGTTACATGACTATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| CDS-3UTR TCA 90 bp | TTTCCCTGGAAGCACAATACTATAAATACGAGAAACATTTCCCAAAGGGAAAGCTGGAGAGTGACATACTaGTTCCTCAGCTCTGAGATG | + |
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Preference number: 4 (lower is better) Translates to: FPWKHNTINTRNISQRESWRVTY*FLSSEM Trigger: CATCTCAGAGCTGAGGAATCAGTATGTCACTCTCCA...GCTTTCCCTTTGGGAAATGTTTCTCGTATTTATAGTATTGTGCTTCCAGGGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| 3UTR CAA 72 bp | AAAACAAAAACCCACAATTACGCTTGTGCCAGTATGTaGCACAAACCTGGAGTTCTCCAGAAATTAGGACAG | + |
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Preference number: 4 (lower is better) Translates to: KTKTHNYACASM*HKPGVLQKLGQ Trigger: CTGTCCTAATTTCTGGAGAACTCCAGGTTTGTGCAACATACTGGCACAAGCGTAATTGTGGGTTTTTGTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| CDS-3UTR TCA 90 bp | AACACTTTCCCTATAGTTCCTCCAGCTTTTAACCAACTAATCATCAAAAGGAAGATGTCTGAGTGGATCTaGGTTAGGTCATGGATATTT | + |
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Preference number: 4 (lower is better) Translates to: NTFPIVPPAFNQLIIKRKMSEWI*VRSWIF Trigger: AAATATCCATGACCTAACTCAGATCCACTCAGACAT...CTTCCTTTTGATGATTAGTTGGTTAAAAGCTGGAGGAACTATAGGGAAAGTGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| CDS-3UTR CAA 90 bp | GGCACCAACTGCTACATTATCAGAAGAGGGTGGGCCTGGGACTTTTGCCTGGGTAAACACCTTGGTTCCTaGAAAGGCCTCTTCACATTC | + |
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Preference number: 5 (lower is better) Translates to: GTNCYIIRRGWAWDFCLGKHLGS*KGLFTF Trigger: GAATGTGAAGAGGCCTTTCAAGGAACCAAGGTGTTT...ACCCAGGCAAAAGTCCCAGGCCCACCCTCTTCTGATAATGTAGCAGTTGGTGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| CDS-3UTR CAA 90 bp | ACTGAGCACTATTCTTGGGAAGAGAGCATCCCGCATCCCGCCTCCTTTCCTACACTTTTCAACATCCCATaGGGCATCACAAACACCTTG | + |
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Preference number: 5 (lower is better) Translates to: TEHYSWEESIPHPASFPTLFNIP*GITNTL Trigger: CAAGGTGTTTGTGATGCCCAATGGGATGTTGAAAAG...TGTAGGAAAGGAGGCGGGATGCGGGATGCTCTCTTCCCAAGAATAGTGCTCAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| CDS-3UTR CAA 90 bp | GATAGTCATGTAACAAACCAAGGCAATGTCGGTCTTGAGCCAGACTCACAAAGTTACAGTGTCTCTGCATaGCTGCTCCGGGGCCGTTTG | + |
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Preference number: 5 (lower is better) Translates to: DSHVTNQGNVGLEPDSQSYSVSA*LLRGRL Trigger: CAAACGGCCCCGGAGCAGCAATGCAGAGACACTGTA...ACTTTGTGAGTCTGGCTCAAGACCGACATTGCCTTGGTTTGTTACATGACTATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| CDS-3UTR CAA 90 bp | TGCGATTGGTTTGTTACTGAGCACTATTCTTGGGAAGAGAGCATCCCGCATCCCATTGATACCCCGAAGTaGTTCCCATCTTCTATTCTG | + |
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Preference number: 5 (lower is better) Translates to: CDWFVTEHYSWEESIPHPIDTPK*FPSSIL Trigger: CAGAATAGAAGATGGGAACAACTTCGGGGTATCAAT...GGGATGCGGGATGCTCTCTTCCCAAGAATAGTGCTCAGTAACAAACCAATCGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019470.14 |
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| CDS GCA 90 bp | AGCAGCCGAATCTCGGGTTTTACTTTCTCAATAATGTCCACAAGCTaGTGGTTGCTTTTCAACATCCCATTGGGCATCACAAACACCTTG | + |
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Preference number: 5 (lower is better) Translates to: SSRISGFTFSIMSTS*WLLFNIPLGITNTL Trigger: CAAGGTGTTTGTGATGCCCAATGGGATGTTGAAAAGCAACCAGCAGCTTGTGGACATTATTGAGAAAGTAAAACCCGAGATTCGGCTGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000019470.14 ENSMUST00000142640.8 ENSMUST00000151385.2 |
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| CDS GCA 72 bp | TGGTTCCTTGAAAGGCCTCTTCACATTCATCCAACCTaGGCTTCTTGTAAGTGGGACCATCCAGTCCATCGT | + |
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Preference number: 6 (lower is better) Translates to: WFLERPLHIHPT*ASCKWDHPVHR Trigger: ACGATGGACTGGATGGTCCCACTTACAAGAAGCGCAGGTTGGATGAATGTGAAGAGGCCTTTCAAGGAACCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000019470.14 ENSMUST00000142640.8 ENSMUST00000151385.2 |
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| CDS CCA 72 bp | TGCTTTTCAACATCCCATTGGGCATCACAAACACCTTaGTTCCTTGAAAGGCCTCTTCACATTCATCCAACC | + |
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Preference number: 6 (lower is better) Translates to: CFSTSHWASQTP*FLERPLHIHPT Trigger: GGTTGGATGAATGTGAAGAGGCCTTTCAAGGAACCAAGGTGTTTGTGATGCCCAATGGGATGTTGAAAAGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000019470.14 ENSMUST00000142640.8 ENSMUST00000151385.2 |
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| CDS CAA 90 bp | CGAATCTCGGGTTTTACTTTCTCAATAATGTCCACAAGCTGCTGGTaGCTTTTCAACATCCCATTGGGCATCACAAACACCTTGGTTCCT | + |
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Preference number: 6 (lower is better) Translates to: RISGFTFSIMSTSCW*LFNIPLGITNTLVP Trigger: AGGAACCAAGGTGTTTGTGATGCCCAATGGGATGTTGAAAAGCAACCAGCAGCTTGTGGACATTATTGAGAAAGTAAAACCCGAGATTCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000019470.14 ENSMUST00000142640.8 ENSMUST00000151385.2 |
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| CDS GCA 72 bp | ATCTCGGGTTTTACTTTCTCAATAATGTCCACAAGCTaGTGGTTGCTTTTCAACATCCCATTGGGCATCACA | + |
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Preference number: 6 (lower is better) Translates to: ISGFTFSIMSTS*WLLFNIPLGIT Trigger: TGTGATGCCCAATGGGATGTTGAAAAGCAACCAGCAGCTTGTGGACATTATTGAGAAAGTAAAACCCGAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000019470.14 ENSMUST00000142640.8 ENSMUST00000151385.2 |
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| CDS CCA 72 bp | TCGGGTTTTACTTTCTCAATAATGTCCACAAGCTGCTaGTTGCTTTTCAACATCCCATTGGGCATCACAAAC | + |
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Preference number: 6 (lower is better) Translates to: SGFTFSIMSTSC*LLFNIPLGITN Trigger: GTTTGTGATGCCCAATGGGATGTTGAAAAGCAACCAGCAGCTTGTGGACATTATTGAGAAAGTAAAACCCGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000019470.14 ENSMUST00000142640.8 ENSMUST00000151385.2 |
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| CDS CAA 72 bp | GGTTTTACTTTCTCAATAATGTCCACAAGCTGCTGGTaGCTTTTCAACATCCCATTGGGCATCACAAACACC | + |
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Preference number: 6 (lower is better) Translates to: GFTFSIMSTSCW*LFNIPLGITNT Trigger: GGTGTTTGTGATGCCCAATGGGATGTTGAAAAGCAACCAGCAGCTTGTGGACATTATTGAGAAAGTAAAACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000019470.14 ENSMUST00000142640.8 ENSMUST00000151385.2 |
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