Pregenerated sensors for PSME1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022216Ensembl transcript IDs: ENSMUST00000089619.13, ENSMUST00000172738.2, ENSMUST00000174259.8, ENSMUST00000174419.2, ENSMUST00000174484.8, ENSMUST00000174563.8
Found 73 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTCCTGGTGAAAAGCAGGAAGGTTTCTGCTATACCCATCACAGAATaGGAGAGGGGGCTCAATAGATCATTCCCTTGGTTTCTCCACGGG | + |
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Preference number: 1 (lower is better) Translates to: FLVKSRKVSAIPITE*ERGLNRSFPWFLHG Trigger: CCCGTGGAGAAACCAAGGGAATGATCTATTGAGCCCCCTCTCTCATTCTGTGATGGGTATAGCAGAAACCTTCCTGCTTTTCACCAGGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000174419.2 |
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| 3UTR-3UTR TCA 90 bp | GAAGACTGCGTCCAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTATCATTTCGGATCTCCATaGCCATCAGACGGATCTCCT | + |
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Preference number: 2 (lower is better) Translates to: EDCVQSRVPGEKQEGFCYHFGSP*PSDGSP Trigger: AGGAGATCCGTCTGATGGTCATGGAGATCCGAAATG...ATAGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTGGACGCAGTCTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174419.2 |
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| 3UTR-3UTR GCA 90 bp | GAGAGAGGGGGCTCAATAGATCATTCCCTTGGTTTCTCCACGGGGCTTCTTGAGAAGCAGGAAGGTTTCTaGTATACCCATCACAGAATG | + |
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Preference number: 2 (lower is better) Translates to: ERGGSIDHSLGFSTGLLEKQEGF*YTHHRM Trigger: CATTCTGTGATGGGTATAGCAGAAACCTTCCTGCTT...CTCAAGAAGCCCCGTGGAGAAACCAAGGGAATGATCTATTGAGCCCCCTCTCTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000174419.2 |
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| 3UTR-3UTR CCA 90 bp | AAGACTGCGTCCAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTATAAATAGATCATTCCCTTaGTTTCTCCACGGGGCTTCT | + |
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Preference number: 2 (lower is better) Translates to: KTASSLEFLVKSRKVSAINRSFP*FLHGAS Trigger: AGAAGCCCCGTGGAGAAACCAAGGGAATGATCTATT...TATAGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTGGACGCAGTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174419.2 |
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| 3UTR CCA 72 bp | GCATTTCGGATCTCCATGACCATCAGACGGATCTCCTaGTACTCCGCCTCGTCCAGCTCGTGCACCAGCTGC | + |
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Preference number: 3 (lower is better) Translates to: AFRISMTIRRIS*YSASSSSCTSC Trigger: GCAGCTGGTGCACGAGCTGGACGAGGCGGAGTACCAGGAGATCCGTCTGATGGTCATGGAGATCCGAAATGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174419.2 |
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| 3UTR TCA 72 bp | TGTCATATAACACAGCATAAGCATTTCGGATCTCCATaGCCATCAGACGGATCTCCTGGTACTCCGCCTCGT | + |
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Preference number: 3 (lower is better) Translates to: CHITQHKHFGSP*PSDGSPGTPPR Trigger: ACGAGGCGGAGTACCAGGAGATCCGTCTGATGGTCATGGAGATCCGAAATGCTTATGCTGTGTTATATGACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174419.2 |
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| 3UTR-3UTR CAA 90 bp | AAGAAGACTGCGTCCAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTGCAACTATGTATTTATaGTGTTTGGGAGGCAGAGTG | + |
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Preference number: 3 (lower is better) Translates to: KKTASSLEFLVKSRKVSAATMYL*CLGGRV Trigger: CACTCTGCCTCCCAAACACAATAAATACATAGTTGC...AGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTGGACGCAGTCTTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000174259.8 ENSMUST00000174419.2 |
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| CDS-3UTR CCA 90 bp | GAGAGAGGGGGCTCAATAGATCATTCCCTTGGTTTCTCCACGGGGCTTCTTGAGGCTGCTTGGCTGCTTTaGCCACGGCGTCACCCCTCT | + |
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Preference number: 4 (lower is better) Translates to: ERGGSIDHSLGFSTGLLEAAWLL*PRRHPS Trigger: AGAGGGGTGACGCCGTGGCCAAAGCAGCCAAGCAGC...CTCAAGAAGCCCCGTGGAGAAACCAAGGGAATGATCTATTGAGCCCCCTCTCTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000174419.2 |
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| CDS-3UTR GCA 90 bp | GACTGCGTCCAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTATACCGTGGGGCTGCTTGGCTaGTTTGGCCACGGCGTCACC | + |
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Preference number: 4 (lower is better) Translates to: DCVQSRVPGEKQEGFCYTVGLLG*FGHGVT Trigger: GGTGACGCCGTGGCCAAAGCAGCCAAGCAGCCCCAC...GGTATAGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTGGACGCAGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000174259.8 ENSMUST00000174419.2 |
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| CDS-3UTR CCA 90 bp | ATCATTCCCTTGGTTTCTCCACGGGGCTTCTTGAGCTTCTCAAAGTTCTTCAGGCCACGTGGGGCTGCTTaGCTGCTTTGGCCACGGCGT | + |
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Preference number: 4 (lower is better) Translates to: IIPLVSPRGFLSFSKFFRPRGAA*LLWPRR Trigger: ACGCCGTGGCCAAAGCAGCCAAGCAGCCCCACGTGG...CCTGAAGAACTTTGAGAAGCTCAAGAAGCCCCGTGGAGAAACCAAGGGAATGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174419.2 |
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| CDS-3UTR CCA 90 bp | AAGACTGCGTCCAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTATACCACGTGGGGCTGCTTaGCTGCTTTGGCCACGGCGT | + |
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Preference number: 4 (lower is better) Translates to: KTASSLEFLVKSRKVSAIPRGAA*LLWPRR Trigger: ACGCCGTGGCCAAAGCAGCCAAGCAGCCCCACGTGG...TATAGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTGGACGCAGTCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000174259.8 ENSMUST00000174419.2 |
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| CDS-3UTR GCA 90 bp | ATAGATCATTCCCTTGGTTTCTCCACGGGGCTTCTTGAGCTTCTCAAAGTTCTTCCTACCACGTGGGGCTaGTTGGCTGCTTTGGCCACG | + |
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Preference number: 4 (lower is better) Translates to: IDHSLGFSTGLLELLKVLPTTWG*LAALAT Trigger: CGTGGCCAAAGCAGCCAAGCAGCCCCACGTGGTAGG...AAGAACTTTGAGAAGCTCAAGAAGCCCCGTGGAGAAACCAAGGGAATGATCTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174419.2 |
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| CDS-3UTR CCA 90 bp | TGCGTCCAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTATACCCATACATCCACCTTGGCTTaGGCTTCGGGATGGACCCTC | + |
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Preference number: 4 (lower is better) Translates to: CVQSRVPGEKQEGFCYTHTSTLA*ASGWTL Trigger: GAGGGTCCATCCCGAAGCCCAAGCCAAGGTGGATGT...ATGGGTATAGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTGGACGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174259.8 |
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| CDS-3UTR CCA 90 bp | AGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTATACCCATCACAGAAGCTGCTTGGCTGCTTTaGCCACGGCGTCACCCCTCT | + |
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Preference number: 4 (lower is better) Translates to: SLEFLVKSRKVSAIPITEAAWLL*PRRHPS Trigger: AGAGGGGTGACGCCGTGGCCAAAGCAGCCAAGCAGC...TTCTGTGATGGGTATAGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000174259.8 ENSMUST00000174419.2 |
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| CDS-3UTR TCA 90 bp | GACTGCGTCCAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTATACCCTCCACGGGGCTTCTTaGGCTTCTCAAAGTTCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: DCVQSRVPGEKQEGFCYTLHGAS*ASQSSS Trigger: TGAAGAACTTTGAGAAGCTCAAGAAGCCCCGTGGAG...GGTATAGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTGGACGCAGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174259.8 |
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| CDS-3UTR TCA 90 bp | GTCCAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTATACCCATCACCCTTCCAGCTTGGTGTaGAGGTTGGTCATCAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: VQSRVPGEKQEGFCYTHHPSSLV*RLVISS Trigger: TGAGCTGATGACCAACCTTCACACCAAGCTGGAAGG...GTGATGGGTATAGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTGGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000174259.8 ENSMUST00000174419.2 |
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| CDS-3UTR GCA 90 bp | GACTGCGTCCAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTATACCCCACAATCTTCTCATTaGAGTTCACTGGGCCACAGG | + |
|
Preference number: 4 (lower is better) Translates to: DCVQSRVPGEKQEGFCYTPQSSH*SSLGHR Trigger: CCTGTGGCCCAGTGAACTGCAATGAGAAGATTGTGG...GGTATAGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTGGACGCAGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174259.8 |
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| CDS-3UTR CCA 90 bp | AAGACTGCGTCCAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTATAGGAACACATCCACCTTaGCTTGGGCTTCGGGATGGA | + |
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Preference number: 4 (lower is better) Translates to: KTASSLEFLVKSRKVSAIGTHPP*LGLRDG Trigger: TCCATCCCGAAGCCCAAGCCAAGGTGGATGTGTTCC...TATAGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTGGACGCAGTCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174259.8 |
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| CDS-3UTR TCA 90 bp | TGCGTCCAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTATACCCATCCTTCTCTTTCTCTTTaGCTGGATCGGGTACTGGGA | + |
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Preference number: 4 (lower is better) Translates to: CVQSRVPGEKQEGFCYTHPSLSL*LDRVLG Trigger: TCCCAGTACCCGATCCAGTCAAAGAGAAAGAGAAGG...ATGGGTATAGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTGGACGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174259.8 |
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| CDS-3UTR GCA 90 bp | GTCCAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTATACCCATCACGCAGGTTCTCTGTCTTaGTACACAGGTCTTCACGGA | + |
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Preference number: 4 (lower is better) Translates to: VQSRVPGEKQEGFCYTHHAGSLS*YTGLHG Trigger: TCCGTGAAGACCTGTGTAGCAAGACAGAGAACCTGC...GTGATGGGTATAGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTGGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174259.8 |
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| CDS-3UTR GCA 90 bp | GAAGACTGCGTCCAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTATTCTTCCTTCTCCTGTTaGTTCTTCCGCTCCTCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: EDCVQSRVPGEKQEGFCYSSFSC*FFRSSF Trigger: GAAGGAGGAGCGGAAGAAGCAACAGGAGAAGGAAGA...ATAGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTGGACGCAGTCTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174259.8 |
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| CDS-3UTR GCA 90 bp | GAAGACTGCGTCCAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTATCGAGGTATCTGTAGCTaGAACCAGGTAGTGACCAGA | + |
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Preference number: 4 (lower is better) Translates to: EDCVQSRVPGEKQEGFCYRGICS*NQVVTR Trigger: TCTGGTCACTACCTGGTTGCAGCTACAGATACCTCG...ATAGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTGGACGCAGTCTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174259.8 |
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| CDS-3UTR CCA 90 bp | CAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTATACCCATCACAGAGACTGGATCGGGTACTaGGATGTCCAATGGAGCCTT | + |
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Preference number: 4 (lower is better) Translates to: QSRVPGEKQEGFCYTHHRDWIGY*DVQWSL Trigger: AAGGCTCCATTGGACATCCCAGTACCCGATCCAGTC...TCTGTGATGGGTATAGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174259.8 |
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| CDS-3UTR CCA 90 bp | GACTGCGTCCAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTATACCCTCTTTCTCTTTGACTaGATCGGGTACTGGGATGTC | + |
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Preference number: 4 (lower is better) Translates to: DCVQSRVPGEKQEGFCYTLFLFD*IGYWDV Trigger: GACATCCCAGTACCCGATCCAGTCAAAGAGAAAGAG...GGTATAGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTGGACGCAGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174259.8 |
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| CDS-3UTR CCA 90 bp | GACTGCGTCCAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTATACCGCTTGGTGTGAAGGTTaGTCATCAGCTCAAACACCT | + |
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Preference number: 4 (lower is better) Translates to: DCVQSRVPGEKQEGFCYTAWCEG*SSAQTP Trigger: AGGTGTTTGAGCTGATGACCAACCTTCACACCAAGC...GGTATAGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTGGACGCAGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000174259.8 ENSMUST00000174419.2 |
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| CDS-3UTR TCA 90 bp | AAGAAGACTGCGTCCAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTTCAGGTTGGCTTCATTaGGAGCTGGCTCCTTTAAGA | + |
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Preference number: 4 (lower is better) Translates to: KKTASSLEFLVKSRKVSASGWLH*ELAPLR Trigger: TCTTAAAGGAGCCAGCTCTCAATGAAGCCAACCTGA...AGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTGGACGCAGTCTTCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174259.8 |
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| CDS-3UTR TCA 90 bp | CAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTATACCCATCACAGACATTTCGGATCTCCATaGCCATCAGACGGATCTCCT | + |
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Preference number: 4 (lower is better) Translates to: QSRVPGEKQEGFCYTHHRHFGSP*PSDGSP Trigger: AGGAGATCCGTCTGATGGTCATGGAGATCCGAAATG...TCTGTGATGGGTATAGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174259.8 |
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| CDS-3UTR TCA 90 bp | ATAGATCATTCCCTTGGTTTCTCCACGGGGCTTCTTGAGCTTCTCAAAGTTCTTCCTTCCAGCTTGGTGTaGAGGTTGGTCATCAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: IDHSLGFSTGLLELLKVLPSSLV*RLVISS Trigger: TGAGCTGATGACCAACCTTCACACCAAGCTGGAAGG...AAGAACTTTGAGAAGCTCAAGAAGCCCCGTGGAGAAACCAAGGGAATGATCTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174419.2 |
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| CDS-3UTR CCA 90 bp | AAGAAGACTGCGTCCAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTGCTTGGTGTGAAGGTTaGTCATCAGCTCAAACACCT | + |
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Preference number: 4 (lower is better) Translates to: KKTASSLEFLVKSRKVSAAWCEG*SSAQTP Trigger: AGGTGTTTGAGCTGATGACCAACCTTCACACCAAGC...AGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTGGACGCAGTCTTCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000174259.8 ENSMUST00000174419.2 |
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| CDS-3UTR CCA 90 bp | AAGACTGCGTCCAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTATATACTGGGATGTCCAATaGAGCCTTCAGATTGCTCAG | + |
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Preference number: 4 (lower is better) Translates to: KTASSLEFLVKSRKVSAIYWDVQ*SLQIAQ Trigger: CTGAGCAATCTGAAGGCTCCATTGGACATCCCAGTA...TATAGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTGGACGCAGTCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174259.8 |
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| CDS-3UTR CCA 90 bp | TGCGTCCAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTATACCCATACTCTGAGATTTTCTTaGGAAAATAGCTCCCAAGCA | + |
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Preference number: 4 (lower is better) Translates to: CVQSRVPGEKQEGFCYTHTLRFS*ENSSQA Trigger: TGCTTGGGAGCTATTTTCCCAAGAAAATCTCAGAGT...ATGGGTATAGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTGGACGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000174259.8 |
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| CDS-3UTR CCA 90 bp | AGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTATACCCATCACAGAAAATAGATCATTCCCTTaGTTTCTCCACGGGGCTTCT | + |
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Preference number: 4 (lower is better) Translates to: SLEFLVKSRKVSAIPITENRSFP*FLHGAS Trigger: AGAAGCCCCGTGGAGAAACCAAGGGAATGATCTATT...TTCTGTGATGGGTATAGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000174259.8 |
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| CDS-3UTR CCA 90 bp | CAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTATACCCATCACAGATCAAACACCTTTTCCTaGACAGCCACGCCAAAATTA | + |
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Preference number: 4 (lower is better) Translates to: QSRVPGEKQEGFCYTHHRSNTFS*TATPKL Trigger: TAATTTTGGCGTGGCTGTCCAGGAAAAGGTGTTTGA...TCTGTGATGGGTATAGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000174259.8 |
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| CDS-3UTR TCA 90 bp | CAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTATACCCATCACAGAGAACGCATCCAACTCTaGGATTTTCTTGGGAAAATA | + |
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Preference number: 4 (lower is better) Translates to: QSRVPGEKQEGFCYTHHRERIQL*DFLGKI Trigger: TATTTTCCCAAGAAAATCTCAGAGTTGGATGCGTTC...TCTGTGATGGGTATAGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000174259.8 |
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| CDS-3UTR TCA 90 bp | GAAGACTGCGTCCAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTATCAAAGTTCTTCAGGATaGTGTCATATAACACAGCAT | + |
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Preference number: 4 (lower is better) Translates to: EDCVQSRVPGEKQEGFCYQSSSG*CHITQH Trigger: ATGCTGTGTTATATGACATCATCCTGAAGAACTTTG...ATAGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTGGACGCAGTCTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174259.8 |
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| CDS CCA 90 bp | GCACCAGCTGCCGATAGTCACCCACGTGGGGCTGCTTGGCTGCTTTaGCCACGGCGTCACCCCTCTCGGAGAAGTACTTGGAGATCTGCG | + |
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Preference number: 5 (lower is better) Translates to: APAADSHPRGAAWLL*PRRHPSRRSTWRSA Trigger: CGCAGATCTCCAAGTACTTCTCCGAGAGGGGTGACGCCGTGGCCAAAGCAGCCAAGCAGCCCCACGTGGGTGACTATCGGCAGCTGGTGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000089619.13 ENSMUST00000172738.2 ENSMUST00000174259.8 ENSMUST00000174484.8 |
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| CDS CCA 90 bp | GCCACGGCGTCACCCCTCTCGGAGAAGTACTTGGAGATCTGCGTGTaGAAGCCTTCCAGCTGGACAGCCACGCCAAAATTATTCCCATCC | + |
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Preference number: 5 (lower is better) Translates to: ATASPLSEKYLEICV*KPSSWTATPKLFPS Trigger: GGATGGGAATAATTTTGGCGTGGCTGTCCAGCTGGAAGGCTTCCACACGCAGATCTCCAAGTACTTCTCCGAGAGGGGTGACGCCGTGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089619.13 |
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| CDS-3UTR CAA 90 bp | AAGACTGCGTCCAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTATACCCACGTGGGGCTGCTaGGCTGCTTTGGCCACGGCG | + |
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Preference number: 5 (lower is better) Translates to: KTASSLEFLVKSRKVSAIPTWGC*AALATA Trigger: CGCCGTGGCCAAAGCAGCCAAGCAGCCCCACGTGGG...TATAGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTGGACGCAGTCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174259.8 |
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| CDS-3UTR CAA 90 bp | CAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTATACCCATCACAGAGGCTGCTTGGCTGCTTaGGCCACGGCGTCACCCCTC | + |
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Preference number: 5 (lower is better) Translates to: QSRVPGEKQEGFCYTHHRGCLAA*ATASPL Trigger: GAGGGGTGACGCCGTGGCCAAAGCAGCCAAGCAGCC...TCTGTGATGGGTATAGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000174259.8 ENSMUST00000174419.2 |
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| CDS-3UTR CAA 90 bp | GACTGCGTCCAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTATACCCGGAACACATCCACCTaGGCTTGGGCTTCGGGATGG | + |
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Preference number: 5 (lower is better) Translates to: DCVQSRVPGEKQEGFCYTRNTST*AWASGW Trigger: CCATCCCGAAGCCCAAGCCAAGGTGGATGTGTTCCG...GGTATAGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTGGACGCAGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174259.8 |
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| CDS-3UTR CAA 90 bp | ATAGATCATTCCCTTGGTTTCTCCACGGGGCTTCTTGAGCTTCTCAAAGTTCTTGGCTGCTTGGCTGCTTaGGCCACGGCGTCACCCCTC | + |
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Preference number: 5 (lower is better) Translates to: IDHSLGFSTGLLELLKVLGCLAA*ATASPL Trigger: GAGGGGTGACGCCGTGGCCAAAGCAGCCAAGCAGCC...AAGAACTTTGAGAAGCTCAAGAAGCCCCGTGGAGAAACCAAGGGAATGATCTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174419.2 |
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| CDS-3UTR CAA 90 bp | AAGAAGACTGCGTCCAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTCACATCCACCTTGGCTaGGGCTTCGGGATGGACCCT | + |
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Preference number: 5 (lower is better) Translates to: KKTASSLEFLVKSRKVSAHIHLG*GFGMDP Trigger: AGGGTCCATCCCGAAGCCCAAGCCAAGGTGGATGTG...AGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTGGACGCAGTCTTCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174259.8 |
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| CDS CCA 90 bp | CTCCTTCTCTTTCTCTTTGACTGGATCGGGTACTGGGATGTCCAATaGAGCCTTCAGATTGCTCAGGTTGGCTTCATTGAGAGCTGGCTC | + |
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Preference number: 5 (lower is better) Translates to: LLLFLFDWIGYWDVQ*SLQIAQVGFIESWL Trigger: GAGCCAGCTCTCAATGAAGCCAACCTGAGCAATCTGAAGGCTCCATTGGACATCCCAGTACCCGATCCAGTCAAAGAGAAAGAGAAGGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000089619.13 ENSMUST00000172738.2 ENSMUST00000174259.8 ENSMUST00000174484.8 ENSMUST00000174563.8 |
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| CDS CCA 90 bp | ACTTGGAGATCTGCGTGTGGAAGCCTTCCAGCTTGGTGTGAAGGTTaGTCATCAGCTCAAACACCTTTTCCTGGACAGCCACGCCAAAAT | + |
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Preference number: 5 (lower is better) Translates to: TWRSACGSLPAWCEG*SSAQTPFPGQPRQN Trigger: ATTTTGGCGTGGCTGTCCAGGAAAAGGTGTTTGAGCTGATGACCAACCTTCACACCAAGCTGGAAGGCTTCCACACGCAGATCTCCAAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000174259.8 ENSMUST00000174484.8 ENSMUST00000174563.8 |
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| CDS CCA 90 bp | TCTCGGAGAAGTACTTGGAGATCTGCGTGTGGAAGCCTTCCAGCTTaGTGTGAAGGTTGGTCATCAGCTCAAACACCTTTTCCTGGACAG | + |
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Preference number: 5 (lower is better) Translates to: SRRSTWRSACGSLPA*CEGWSSAQTPFPGQ Trigger: CTGTCCAGGAAAAGGTGTTTGAGCTGATGACCAACCTTCACACCAAGCTGGAAGGCTTCCACACGCAGATCTCCAAGTACTTCTCCGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000174259.8 ENSMUST00000174484.8 ENSMUST00000174563.8 |
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| CDS-3UTR CAA 90 bp | AAGAAGACTGCGTCCAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTCTCAGGTTGGCTTCATaGAGAGCTGGCTCCTTTAAG | + |
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Preference number: 5 (lower is better) Translates to: KKTASSLEFLVKSRKVSALRLAS*RAGSFK Trigger: CTTAAAGGAGCCAGCTCTCAATGAAGCCAACCTGAG...AGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTGGACGCAGTCTTCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174259.8 |
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| CDS-3UTR CAA 90 bp | GTCCAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTATACCCATCACCAGGTAGTGACCAGATaGAGTTGCTCAGTGACATCC | + |
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Preference number: 5 (lower is better) Translates to: VQSRVPGEKQEGFCYTHHQVVTR*SCSVTS Trigger: GGATGTCACTGAGCAACTCAATCTGGTCACTACCTG...GTGATGGGTATAGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTGGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174259.8 |
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| CDS TCA 90 bp | CTGGGATGTCCAATGGAGCCTTCAGATTGCTCAGGTTGGCTTCATTaGGAGCTGGCTCCTTTAAGAACGCATCCAACTCTGAGATTTTCT | + |
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Preference number: 5 (lower is better) Translates to: LGCPMEPSDCSGWLH*ELAPLRTHPTLRFS Trigger: AGAAAATCTCAGAGTTGGATGCGTTCTTAAAGGAGCCAGCTCTCAATGAAGCCAACCTGAGCAATCTGAAGGCTCCATTGGACATCCCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000089619.13 ENSMUST00000172738.2 ENSMUST00000174259.8 ENSMUST00000174484.8 ENSMUST00000174563.8 |
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| CDS-3UTR CAA 90 bp | GTCCAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTATACCCATCACAATGGAGCCTTCAGATaGCTCAGGTTGGCTTCATTG | + |
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Preference number: 5 (lower is better) Translates to: VQSRVPGEKQEGFCYTHHNGAFR*LRLASL Trigger: CAATGAAGCCAACCTGAGCAATCTGAAGGCTCCATT...GTGATGGGTATAGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTGGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174259.8 |
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| CDS-3UTR CAA 90 bp | TGCGTCCAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTATACCCATTGCTCAGTGACATCCTaGATCTCAGGTTTTAGGCGT | + |
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Preference number: 5 (lower is better) Translates to: CVQSRVPGEKQEGFCYTHCSVTS*ISGFRR Trigger: ACGCCTAAAACCTGAGATCAAGGATGTCACTGAGCA...ATGGGTATAGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTGGACGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174259.8 |
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| CDS-3UTR CAA 90 bp | CAGTCTAGAGTTCCTGGTGAAAAGCAGGAAGGTTTCTGCTATACCCATCACAGATCTCCACGGGGCTTCTaGAGCTTCTCAAAGTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: QSRVPGEKQEGFCYTHHRSPRGF*SFSKFF Trigger: GAAGAACTTTGAGAAGCTCAAGAAGCCCCGTGGAGA...TCTGTGATGGGTATAGCAGAAACCTTCCTGCTTTTCACCAGGAACTCTAGACTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174259.8 |
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| CDS CCA 72 bp | GCACCAGCTGCCGATAGTCACCCACGTGGGGCTGCTTaGCTGCTTTGGCCACGGCGTCACCCCTCTCGGAGA | + |
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Preference number: 6 (lower is better) Translates to: APAADSHPRGAA*LLWPRRHPSRR Trigger: TCTCCGAGAGGGGTGACGCCGTGGCCAAAGCAGCCAAGCAGCCCCACGTGGGTGACTATCGGCAGCTGGTGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000089619.13 ENSMUST00000172738.2 ENSMUST00000174259.8 ENSMUST00000174484.8 |
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| CDS GCA 72 bp | CAGCTGCCGATAGTCACCCACGTGGGGCTGCTTGGCTaGTTTGGCCACGGCGTCACCCCTCTCGGAGAAGTA | + |
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Preference number: 6 (lower is better) Translates to: QLPIVTHVGLLG*FGHGVTPLGEV Trigger: TACTTCTCCGAGAGGGGTGACGCCGTGGCCAAAGCAGCCAAGCAGCCCCACGTGGGTGACTATCGGCAGCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000089619.13 ENSMUST00000172738.2 ENSMUST00000174259.8 ENSMUST00000174484.8 |
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| CDS CCA 72 bp | GCCGATAGTCACCCACGTGGGGCTGCTTGGCTGCTTTaGCCACGGCGTCACCCCTCTCGGAGAAGTACTTGG | + |
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Preference number: 6 (lower is better) Translates to: ADSHPRGAAWLL*PRRHPSRRSTW Trigger: CCAAGTACTTCTCCGAGAGGGGTGACGCCGTGGCCAAAGCAGCCAAGCAGCCCCACGTGGGTGACTATCGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000089619.13 ENSMUST00000172738.2 ENSMUST00000174259.8 ENSMUST00000174484.8 |
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| CDS CAA 90 bp | TGCTTGGCTGCTTTGGCCACGGCGTCACCCCTCTCGGAGAAGTACTaGGAGATCTGCGTGTGGAAGCCTTCCAGCTGGACAGCCACGCCA | + |
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Preference number: 6 (lower is better) Translates to: CLAALATASPLSEKY*EICVWKPSSWTATP Trigger: TGGCGTGGCTGTCCAGCTGGAAGGCTTCCACACGCAGATCTCCAAGTACTTCTCCGAGAGGGGTGACGCCGTGGCCAAAGCAGCCAAGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089619.13 |
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| CDS CCA 72 bp | CTTTGGCCACGGCGTCACCCCTCTCGGAGAAGTACTTaGAGATCTGCGTGTGGAAGCCTTCCAGCTGGACAG | + |
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Preference number: 6 (lower is better) Translates to: LWPRRHPSRRST*RSACGSLPAGQ Trigger: CTGTCCAGCTGGAAGGCTTCCACACGCAGATCTCCAAGTACTTCTCCGAGAGGGGTGACGCCGTGGCCAAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089619.13 |
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| CDS CAA 72 bp | GCTTTGGCCACGGCGTCACCCCTCTCGGAGAAGTACTaGGAGATCTGCGTGTGGAAGCCTTCCAGCTGGACA | + |
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Preference number: 6 (lower is better) Translates to: ALATASPLSEKY*EICVWKPSSWT Trigger: TGTCCAGCTGGAAGGCTTCCACACGCAGATCTCCAAGTACTTCTCCGAGAGGGGTGACGCCGTGGCCAAAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089619.13 |
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| CDS CAA 72 bp | GCTTTGGCCACGGCGTCACCCCTCTCGGAGAAGTACTaGGAGATCTGCGTGTGGAAGCCTTCCAGCTTGGTG | + |
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Preference number: 6 (lower is better) Translates to: ALATASPLSEKY*EICVWKPSSLV Trigger: CACCAAGCTGGAAGGCTTCCACACGCAGATCTCCAAGTACTTCTCCGAGAGGGGTGACGCCGTGGCCAAAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000172738.2 ENSMUST00000174259.8 ENSMUST00000174419.2 ENSMUST00000174484.8 |
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| CDS CCA 72 bp | CTTTGGCCACGGCGTCACCCCTCTCGGAGAAGTACTTaGAGATCTGCGTGTGGAAGCCTTCCAGCTTGGTGT | + |
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Preference number: 6 (lower is better) Translates to: LWPRRHPSRRST*RSACGSLPAWC Trigger: ACACCAAGCTGGAAGGCTTCCACACGCAGATCTCCAAGTACTTCTCCGAGAGGGGTGACGCCGTGGCCAAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000172738.2 ENSMUST00000174259.8 ENSMUST00000174419.2 ENSMUST00000174484.8 |
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| CDS CAA 72 bp | GTCTTGCTACACAGGTCTTCACGGAACACATCCACCTaGGCTTGGGCTTCGGGATGGACCCTCAGTGTGGCC | + |
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Preference number: 6 (lower is better) Translates to: VLLHRSSRNTST*AWASGWTLSVA Trigger: GGCCACACTGAGGGTCCATCCCGAAGCCCAAGCCAAGGTGGATGTGTTCCGTGAAGACCTGTGTAGCAAGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000089619.13 ENSMUST00000172738.2 ENSMUST00000174259.8 ENSMUST00000174484.8 |
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| CDS CCA 72 bp | TCTTGCTACACAGGTCTTCACGGAACACATCCACCTTaGCTTGGGCTTCGGGATGGACCCTCAGTGTGGCCA | + |
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Preference number: 6 (lower is better) Translates to: SCYTGLHGTHPP*LGLRDGPSVWP Trigger: TGGCCACACTGAGGGTCCATCCCGAAGCCCAAGCCAAGGTGGATGTGTTCCGTGAAGACCTGTGTAGCAAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000089619.13 ENSMUST00000172738.2 ENSMUST00000174259.8 ENSMUST00000174484.8 ENSMUST00000174563.8 |
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| CDS CAA 72 bp | TTCTTGCTACACAGGTCTTCACGGAACACATCCACCTaGGCTTGGGCTTCGGGATGGACCCTCAGTGTGGCC | + |
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Preference number: 6 (lower is better) Translates to: FLLHRSSRNTST*AWASGWTLSVA Trigger: GGCCACACTGAGGGTCCATCCCGAAGCCCAAGCCAAGGTGGATGTGTTCCGTGAAGACCTGTGTAGCAAGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174563.8 |
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| CDS TCA 72 bp | CCAATGGAGCCTTCAGATTGCTCAGGTTGGCTTCATTaGGAGCTGGCTCCTTTAAGAACGCATCCAACTCTG | + |
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Preference number: 6 (lower is better) Translates to: PMEPSDCSGWLH*ELAPLRTHPTL Trigger: CAGAGTTGGATGCGTTCTTAAAGGAGCCAGCTCTCAATGAAGCCAACCTGAGCAATCTGAAGGCTCCATTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000089619.13 ENSMUST00000172738.2 ENSMUST00000174259.8 ENSMUST00000174484.8 ENSMUST00000174563.8 |
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| CDS CCA 72 bp | CTCCTCCTTCTCTTTCTCTTTGACTGGATCGGGTACTaGGATGTCCAATGGAGCCTTCAGATTGCTCAGGTT | + |
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Preference number: 6 (lower is better) Translates to: LLLLFLFDWIGY*DVQWSLQIAQV Trigger: AACCTGAGCAATCTGAAGGCTCCATTGGACATCCCAGTACCCGATCCAGTCAAAGAGAAAGAGAAGGAGGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000089619.13 ENSMUST00000172738.2 ENSMUST00000174259.8 ENSMUST00000174484.8 ENSMUST00000174563.8 |
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| CDS CAA 72 bp | CAGGTAGTGACCAGATTGAGTTGCTCAGTGACATCCTaGATCTCAGGTTTTAGGCGTTGCAGGAGGACCACA | + |
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Preference number: 6 (lower is better) Translates to: QVVTRLSCSVTS*ISGFRRCRRTT Trigger: TGTGGTCCTCCTGCAACGCCTAAAACCTGAGATCAAGGATGTCACTGAGCAACTCAATCTGGTCACTACCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000089619.13 ENSMUST00000174259.8 ENSMUST00000174484.8 ENSMUST00000174563.8 |
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| CDS CAA 90 bp | TTGAGAGCTGGCTCCTTTAAGAACGCATCCAACTCTGAGATTTTCTaGCTACACAGGTCTTCACGGAACACATCCACCTTGGCTTGGGCT | + |
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Preference number: 6 (lower is better) Translates to: LRAGSFKNASNSEIF*LHRSSRNTSTLAWA Trigger: AGCCCAAGCCAAGGTGGATGTGTTCCGTGAAGACCTGTGTAGCAAGAAAATCTCAGAGTTGGATGCGTTCTTAAAGGAGCCAGCTCTCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174563.8 |
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| CDS CCA 72 bp | TTTCTCTTTGACTGGATCGGGTACTGGGATGTCCAATaGAGCCTTCAGATTGCTCAGGTTGGCTTCATTGAG | + |
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Preference number: 6 (lower is better) Translates to: FLFDWIGYWDVQ*SLQIAQVGFIE Trigger: CTCAATGAAGCCAACCTGAGCAATCTGAAGGCTCCATTGGACATCCCAGTACCCGATCCAGTCAAAGAGAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000089619.13 ENSMUST00000172738.2 ENSMUST00000174259.8 ENSMUST00000174484.8 ENSMUST00000174563.8 |
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| CDS CCA 72 bp | AGTACTTGGAGATCTGCGTGTGGAAGCCTTCCAGCTTaGTGTGAAGGTTGGTCATCAGCTCAAACACCTTTT | + |
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Preference number: 6 (lower is better) Translates to: STWRSACGSLPA*CEGWSSAQTPF Trigger: AAAAGGTGTTTGAGCTGATGACCAACCTTCACACCAAGCTGGAAGGCTTCCACACGCAGATCTCCAAGTACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000172738.2 ENSMUST00000174259.8 ENSMUST00000174484.8 ENSMUST00000174563.8 |
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| CDS CAA 72 bp | TCCAATGGAGCCTTCAGATTGCTCAGGTTGGCTTCATaGAGAGCTGGCTCCTTTAAGAACGCATCCAACTCT | + |
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Preference number: 6 (lower is better) Translates to: SNGAFRLLRLAS*RAGSFKNASNS Trigger: AGAGTTGGATGCGTTCTTAAAGGAGCCAGCTCTCAATGAAGCCAACCTGAGCAATCTGAAGGCTCCATTGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000089619.13 ENSMUST00000172738.2 ENSMUST00000174259.8 ENSMUST00000174484.8 ENSMUST00000174563.8 |
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| CDS CAA 90 bp | ACTGGGATGTCCAATGGAGCCTTCAGATTGCTCAGGTTGGCTTCATaGAGAGCTGGCTCCTTTAAGAACGCATCCAACTCTGAGATTTTC | + |
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Preference number: 6 (lower is better) Translates to: TGMSNGAFRLLRLAS*RAGSFKNASNSEIF Trigger: GAAAATCTCAGAGTTGGATGCGTTCTTAAAGGAGCCAGCTCTCAATGAAGCCAACCTGAGCAATCTGAAGGCTCCATTGGACATCCCAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000089619.13 ENSMUST00000172738.2 ENSMUST00000174259.8 ENSMUST00000174484.8 ENSMUST00000174563.8 |
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| CDS GCA 72 bp | GCTCCTTTAAGAACGCATCCAACTCTGAGATTTTCTTaGTACACAGGTCTTCACGGAACACATCCACCTTGG | + |
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Preference number: 6 (lower is better) Translates to: APLRTHPTLRFS*YTGLHGTHPPW Trigger: CCAAGGTGGATGTGTTCCGTGAAGACCTGTGTAGCAAGAAAATCTCAGAGTTGGATGCGTTCTTAAAGGAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174563.8 |
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| CDS CAA 72 bp | AACACCTTTTCCAGATTGAGTTGCTCAGTGACATCCTaGATCTCAGGTTTTAGGCGTTGCAGGAGGACCACA | + |
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Preference number: 6 (lower is better) Translates to: NTFSRLSCSVTS*ISGFRRCRRTT Trigger: TGTGGTCCTCCTGCAACGCCTAAAACCTGAGATCAAGGATGTCACTGAGCAACTCAATCTGGAAAAGGTGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172738.2 |
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| CDS CAA 72 bp | GGCTCCTTTAAGAACGCATCCAACTCTGAGATTTTCTaGCTACACAGGTCTTCACGGAACACATCCACCTTG | + |
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Preference number: 6 (lower is better) Translates to: GSFKNASNSEIF*LHRSSRNTSTL Trigger: CAAGGTGGATGTGTTCCGTGAAGACCTGTGTAGCAAGAAAATCTCAGAGTTGGATGCGTTCTTAAAGGAGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174563.8 |
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