Pregenerated sensors for PSMD8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030591Ensembl transcript IDs: ENSMUST00000059642.17, ENSMUST00000182328.8, ENSMUST00000186182.2, ENSMUST00000209034.2
Found 90 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AAACGCATCCACAGCTGGATAGAAGAGTCCCTCAGTCTGGGCCTGTaGTCTCCTGTGGGCCACCGGGCATCTATACTTAAAACCCAGAGC | + |
|
Preference number: 1 (lower is better) Translates to: KRIHSWIEESLSLGL*SPVGHRASILKTQS Trigger: GCTCTGGGTTTTAAGTATAGATGCCCGGTGGCCCACAGGAGAGCACAGGCCCAGACTGAGGGACTCTTCTATCCAGCTGTGGATGCGTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| 3UTR CCA 90 bp | CCACAGGCTGCTCCCCACCCTATGCAGCTACCTCCCAGTGTACCATaGCTCCTTTTGTCATGGATTACTGCCACTCTGTGCCTCAGTTTC | + |
|
Preference number: 1 (lower is better) Translates to: PQAAPHPMQLPPSVP*LLLSWITATLCLSF Trigger: GAAACTGAGGCACAGAGTGGCAGTAATCCATGACAAAAGGAGCCATGGTACACTGGGAGGTAGCTGCATAGGGTGGGGAGCAGCCTGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209034.2 |
||
| 3UTR GCA 90 bp | TGGGCAGTCTTTGTTCTGCTGATGTCCCCCTCGACTATCACACAGTaGACTGGCACTGTTAGGACAGGGAACAATACCCTCCATCCCCCA | + |
|
Preference number: 1 (lower is better) Translates to: WAVFVLLMSPSTITQ*TGTVRTGNNTLHPP Trigger: TGGGGGATGGAGGGTATTGTTCCCTGTCCTAACAGTGCCAGTGCACTGTGTGATAGTCGAGGGGGACATCAGCAGAACAAAGACTGCCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000209034.2 |
||
| 3UTR TCA 90 bp | TGGGCAGCAAGGGTCAACATCCCTGGGGGCACTGTTCCACTCAAATaGAGCAGTGTAACCATTACCAACAAGTTGCTGCTTTCTAAGGAG | + |
|
Preference number: 1 (lower is better) Translates to: WAARVNIPGGTVPLK*SSVTITNKLLLSKE Trigger: CTCCTTAGAAAGCAGCAACTTGTTGGTAATGGTTACACTGCTTCATTTGAGTGGAACAGTGCCCCCAGGGATGTTGACCCTTGCTGCCCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000209034.2 |
||
| 3UTR-3UTR CCA 90 bp | TGGATAGAAGAGTCCCTCAGTCTGGGCCTGTGCTCTCCTGTGGGCCACCGGGCATCTCCACCATCACACTaGGGAGACTCGGGCCCATTA | + |
|
Preference number: 2 (lower is better) Translates to: WIEESLSLGLCSPVGHRASPPSH*GDSGPL Trigger: TAATGGGCCCGAGTCTCCCCAGTGTGATGGTGGAGA...TGCCCGGTGGCCCACAGGAGAGCACAGGCCCAGACTGAGGGACTCTTCTATCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| 3UTR-3UTR CCA 90 bp | AGCTGGATAGAAGAGTCCCTCAGTCTGGGCCTGTGCTCTCCTGTGGGCCACCGGTCTCCACCATCACACTaGGGAGACTCGGGCCCATTA | + |
|
Preference number: 2 (lower is better) Translates to: SWIEESLSLGLCSPVGHRSPPSH*GDSGPL Trigger: TAATGGGCCCGAGTCTCCCCAGTGTGATGGTGGAGA...CCGGTGGCCCACAGGAGAGCACAGGCCCAGACTGAGGGACTCTTCTATCCAGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| 3UTR-3UTR CCA 90 bp | AGTCTGGGCCTGTGCTCTCCTGTGGGCCACCGGGCATCTATACTTAAAACCCAGTCTCCACCATCACACTaGGGAGACTCGGGCCCATTA | + |
|
Preference number: 2 (lower is better) Translates to: SLGLCSPVGHRASILKTQSPPSH*GDSGPL Trigger: TAATGGGCCCGAGTCTCCCCAGTGTGATGGTGGAGA...CTGGGTTTTAAGTATAGATGCCCGGTGGCCCACAGGAGAGCACAGGCCCAGACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| 3UTR-3UTR CCA 90 bp | AGCTGGATAGAAGAGTCCCTCAGTCTGGGCCTGTGCTCTCCTGTGGGCCACCGGCAGAGCAATGACAACTaGGAAACGCTTCGCAAACTC | + |
|
Preference number: 2 (lower is better) Translates to: SWIEESLSLGLCSPVGHRQSNDN*ETLRKL Trigger: GAGTTTGCGAAGCGTTTCCCAGTTGTCATTGCTCTG...CCGGTGGCCCACAGGAGAGCACAGGCCCAGACTGAGGGACTCTTCTATCCAGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| 3UTR-3UTR CCA 90 bp | AGTGTACCATGGCTCCTTTTGTCATGGATTACTGCCACTCTGTGCCTCAGTTTCTCCTCTCCTGCCTCCTaGGACACCAAGGTCACTGGG | + |
|
Preference number: 2 (lower is better) Translates to: SVPWLLLSWITATLCLSFSSPAS*DTKVTG Trigger: CCCAGTGACCTTGGTGTCCCAGGAGGCAGGAGAGGA...GAAACTGAGGCACAGAGTGGCAGTAATCCATGACAAAAGGAGCCATGGTACACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209034.2 |
||
| 3UTR-3UTR TCA 90 bp | CCCTCAGTCTGGGCCTGTGCTCTCCTGTGGGCCACCGGGCATCTATACTTAAAATTAATCTGCCTTTATTaGAGGCCAGCCTATACTGGG | + |
|
Preference number: 2 (lower is better) Translates to: PSVWACALLWATGHLYLKLICLY*RPAYTG Trigger: CCCAGTATAGGCTGGCCTTCAATAAAGGCAGATTAA...TTTTAAGTATAGATGCCCGGTGGCCCACAGGAGAGCACAGGCCCAGACTGAGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| 3UTR-3UTR TCA 90 bp | GCTGGCTCCACACGTCTGTCAGACCCTAGCCTCTCTCTATGGAAAGGCCAGCAATTAATCTGCCTTTATTaGAGGCCAGCCTATACTGGG | + |
|
Preference number: 2 (lower is better) Translates to: AGSTRLSDPSLSLWKGQQLICLY*RPAYTG Trigger: CCCAGTATAGGCTGGCCTTCAATAAAGGCAGATTAA...TTGCTGGCCTTTCCATAGAGAGAGGCTAGGGTCTGACAGACGTGTGGAGCCAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209034.2 |
||
| 3UTR-3UTR GCA 90 bp | CACCAAGGTCACTGGGCAGCAAGGGTCAACATCCCTGGGGGCACTGTTCCACTCCCATTACCAACAAGTTaGTGCTTTCTAAGGAGTTCT | + |
|
Preference number: 2 (lower is better) Translates to: HQGHWAARVNIPGGTVPLPLPTS*CFLRSS Trigger: AGAACTCCTTAGAAAGCAGCAACTTGTTGGTAATGG...GAGTGGAACAGTGCCCCCAGGGATGTTGACCCTTGCTGCCCAGTGACCTTGGTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000209034.2 |
||
| 3UTR-3UTR CCA 90 bp | CCCAACACCAAAACGCATCCACAGCTGGATAGAAGAGTCCCTCAGTCTGGGCCTCAGAGCAATGACAACTaGGAAACGCTTCGCAAACTC | + |
|
Preference number: 2 (lower is better) Translates to: PNTKTHPQLDRRVPQSGPQSNDN*ETLRKL Trigger: GAGTTTGCGAAGCGTTTCCCAGTTGTCATTGCTCTG...AGGCCCAGACTGAGGGACTCTTCTATCCAGCTGTGGATGCGTTTTGGTGTTGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| 3UTR-3UTR TCA 90 bp | CCTGGCCCAACACCAAAACGCATCCACAGCTGGATAGAAGAGTCCCTCAGTCTGTTAATCTGCCTTTATTaGAGGCCAGCCTATACTGGG | + |
|
Preference number: 2 (lower is better) Translates to: PGPTPKRIHSWIEESLSLLICLY*RPAYTG Trigger: CCCAGTATAGGCTGGCCTTCAATAAAGGCAGATTAA...CAGACTGAGGGACTCTTCTATCCAGCTGTGGATGCGTTTTGGTGTTGGGCCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| 3UTR-3UTR TCA 90 bp | TCTAGTCCCTGGCCCAACACCAAAACGCATCCACAGCTGGATAGAAGAGTCCCTTTAATCTGCCTTTATTaGAGGCCAGCCTATACTGGG | + |
|
Preference number: 2 (lower is better) Translates to: SSPWPNTKTHPQLDRRVPLICLY*RPAYTG Trigger: CCCAGTATAGGCTGGCCTTCAATAAAGGCAGATTAA...AGGGACTCTTCTATCCAGCTGTGGATGCGTTTTGGTGTTGGGCCAGGGACTAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| 3UTR-3UTR GCA 90 bp | CTAAGGAGTTCTTGGGGCAAAGTCAAGATGCGGTATTCCTTAGAGCAGGGGCCATCGACTATCACACAGTaGACTGGCACTGTTAGGACA | + |
|
Preference number: 2 (lower is better) Translates to: LRSSWGKVKMRYSLEQGPSTITQ*TGTVRT Trigger: TGTCCTAACAGTGCCAGTGCACTGTGTGATAGTCGA...TGGCCCCTGCTCTAAGGAATACCGCATCTTGACTTTGCCCCAAGAACTCCTTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209034.2 |
||
| 3UTR-3UTR TCA 90 bp | ACAAGTTGCTGCTTTCTAAGGAGTTCTTGGGGCAAAGTCAAGATGCGGTATTCCCAAGCTCAGAGAGGCTaGGCCACTTGCCTAGGTTTA | + |
|
Preference number: 2 (lower is better) Translates to: TSCCFLRSSWGKVKMRYSQAQRG*ATCLGL Trigger: TAAACCTAGGCAAGTGGCTCAGCCTCTCTGAGCTTG...GGAATACCGCATCTTGACTTTGCCCCAAGAACTCCTTAGAAAGCAGCAACTTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209034.2 |
||
| 3UTR TCA 72 bp | GTAAGCGGCCGGCACCACCACTCCTCACACTGGCCCTaGCAGCCTGCTCTTGAGCTGGTGCCTTACTGCCCA | + |
|
Preference number: 3 (lower is better) Translates to: VSGRHHHSSHWP*QPALELVPYCP Trigger: TGGGCAGTAAGGCACCAGCTCAAGAGCAGGCTGTCAGGGCCAGTGTGAGGAGTGGTGGTGCCGGCCGCTTAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209034.2 |
||
| 3UTR-3UTR CAA 90 bp | CTGGATAGAAGAGTCCCTCAGTCTGGGCCTGTGCTCTCCTGTGGGCCACCGGGCGTTAATCTGCCTTTATaGAAGGCCAGCCTATACTGG | + |
|
Preference number: 3 (lower is better) Translates to: LDRRVPQSGPVLSCGPPGVNLPL*KASLYW Trigger: CCAGTATAGGCTGGCCTTCAATAAAGGCAGATTAAC...GCCCGGTGGCCCACAGGAGAGCACAGGCCCAGACTGAGGGACTCTTCTATCCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| 3UTR CCA 72 bp | CTAGTCCCTGGCCCAACACCAAAACGCATCCACAGCTaGATAGAAGAGTCCCTCAGTCTGGGCCTGTGCTCT | + |
|
Preference number: 3 (lower is better) Translates to: LVPGPTPKRIHS*IEESLSLGLCS Trigger: AGAGCACAGGCCCAGACTGAGGGACTCTTCTATCCAGCTGTGGATGCGTTTTGGTGTTGGGCCAGGGACTAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| 3UTR CCA 72 bp | ACACCAAGGTCACTGGGCAGCAAGGGTCAACATCCCTaGGGGCACTGTTCCACTCAAATGAAGCAGTGTAAC | + |
|
Preference number: 3 (lower is better) Translates to: TPRSLGSKGQHP*GHCSTQMKQCN Trigger: GTTACACTGCTTCATTTGAGTGGAACAGTGCCCCCAGGGATGTTGACCCTTGCTGCCCAGTGACCTTGGTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209034.2 |
||
| 3UTR TCA 72 bp | CTCTCTCTATGGAAAGGCCAGCAAGCTCAGAGAGGCTaGGCCACTTGCCTAGGTTTAGTCATGGGCAGTCTT | + |
|
Preference number: 3 (lower is better) Translates to: LSLWKGQQAQRG*ATCLGLVMGSL Trigger: AAGACTGCCCATGACTAAACCTAGGCAAGTGGCTCAGCCTCTCTGAGCTTGCTGGCCTTTCCATAGAGAGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209034.2 |
||
| 3UTR CCA 72 bp | CTGCCTTTATTGAAGGCCAGCCTATACTGGGTTTGTTaGACTAGCCATATCCACCGCCCTGGTCAAGCCTCA | + |
|
Preference number: 3 (lower is better) Translates to: LPLLKASLYWVC*TSHIHRPGQAS Trigger: TGAGGCTTGACCAGGGCGGTGGATATGGCTAGTCCAACAAACCCAGTATAGGCTGGCCTTCAATAAAGGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209034.2 |
||
| 3UTR-3UTR CAA 90 bp | CCCAACACCAAAACGCATCCACAGCTGGATAGAAGAGTCCCTCAGTCTGGGCCTGTTAATCTGCCTTTATaGAAGGCCAGCCTATACTGG | + |
|
Preference number: 3 (lower is better) Translates to: PNTKTHPQLDRRVPQSGPVNLPL*KASLYW Trigger: CCAGTATAGGCTGGCCTTCAATAAAGGCAGATTAAC...AGGCCCAGACTGAGGGACTCTTCTATCCAGCTGTGGATGCGTTTTGGTGTTGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| 3UTR-3UTR CAA 90 bp | CTTTCTAAGGAGTTCTTGGGGCAAAGTCAAGATGCGGTATTCCTTAGAGCAGGGGAGAGGCTGAGCCACTaGCCTAGGTTTAGTCATGGG | + |
|
Preference number: 3 (lower is better) Translates to: LSKEFLGQSQDAVFLRAGERLSH*PRFSHG Trigger: CCCATGACTAAACCTAGGCAAGTGGCTCAGCCTCTC...CCCTGCTCTAAGGAATACCGCATCTTGACTTTGCCCCAAGAACTCCTTAGAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209034.2 |
||
| 3UTR TCA 72 bp | TTGCCTAGGTTTAGTCATGGGCAGTCTTTGTTCTGCTaGTGTCCCCCTCGACTATCACACAGTGCACTGGCA | + |
|
Preference number: 3 (lower is better) Translates to: LPRFSHGQSLFC*CPPRLSHSALA Trigger: TGCCAGTGCACTGTGTGATAGTCGAGGGGGACATCAGCAGAACAAAGACTGCCCATGACTAAACCTAGGCAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000209034.2 |
||
| 3UTR GCA 72 bp | TTTGTTCTGCTGATGTCCCCCTCGACTATCACACAGTaGACTGGCACTGTTAGGACAGGGAACAATACCCTC | + |
|
Preference number: 3 (lower is better) Translates to: FVLLMSPSTITQ*TGTVRTGNNTL Trigger: GAGGGTATTGTTCCCTGTCCTAACAGTGCCAGTGCACTGTGTGATAGTCGAGGGGGACATCAGCAGAACAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000209034.2 |
||
| 3UTR CCA 72 bp | CGGGCATCTATACTTAAAACCCAGAGCAATGACAACTaGGAAACGCTTCGCAAACTCCCAAATCTCCAGGAG | + |
|
Preference number: 3 (lower is better) Translates to: RASILKTQSNDN*ETLRKLPNLQE Trigger: CTCCTGGAGATTTGGGAGTTTGCGAAGCGTTTCCCAGTTGTCATTGCTCTGGGTTTTAAGTATAGATGCCCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| 3UTR-3UTR CAA 90 bp | ACAAGTTGCTGCTTTCTAAGGAGTTCTTGGGGCAAAGTCAAGATGCGGTATTCCGTTAATCTGCCTTTATaGAAGGCCAGCCTATACTGG | + |
|
Preference number: 3 (lower is better) Translates to: TSCCFLRSSWGKVKMRYSVNLPL*KASLYW Trigger: CCAGTATAGGCTGGCCTTCAATAAAGGCAGATTAAC...GGAATACCGCATCTTGACTTTGCCCCAAGAACTCCTTAGAAAGCAGCAACTTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209034.2 |
||
| 3UTR CCA 72 bp | CCATTACCAACAAGTTGCTGCTTTCTAAGGAGTTCTTaGGGCAAAGTCAAGATGCGGTATTCCTTAGAGCAG | + |
|
Preference number: 3 (lower is better) Translates to: PLPTSCCFLRSS*GKVKMRYSLEQ Trigger: CTGCTCTAAGGAATACCGCATCTTGACTTTGCCCCAAGAACTCCTTAGAAAGCAGCAACTTGTTGGTAATGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209034.2 |
||
| CDS-3UTR TCA 90 bp | AGCTGGATAGAAGAGTCCCTCAGTCTGGGCCTGTGCTCTCCTGTGGGCCACCGGGACTCCCGGCGGAAATaGGGCCGGGAGGTGGAGCCC | + |
|
Preference number: 4 (lower is better) Translates to: SWIEESLSLGLCSPVGHRDSRRK*GREVEP Trigger: GGGCTCCACCTCCCGGCCTCATTTCCGCCGGGAGTC...CCGGTGGCCCACAGGAGAGCACAGGCCCAGACTGAGGGACTCTTCTATCCAGCT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059642.17 ENSMUST00000186182.2 |
||
| CDS-3UTR TCA 90 bp | AGCTGGATAGAAGAGTCCCTCAGTCTGGGCCTGTGCTCTCCTGTGGGCCACCGGGGCCGCCATCTTCCGTaGTGCGGCAAGCCGCCGACC | + |
|
Preference number: 4 (lower is better) Translates to: SWIEESLSLGLCSPVGHRGRHLP*CGKPPT Trigger: GGTCGGCGGCTTGCCGCATCACGGAAGATGGCGGCC...CCGGTGGCCCACAGGAGAGCACAGGCCCAGACTGAGGGACTCTTCTATCCAGCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059642.17 ENSMUST00000186182.2 |
||
| CDS-3UTR TCA 90 bp | CCCTCAGTCTGGGCCTGTGCTCTCCTGTGGGCCACCGGGCATCTATACTTAAAAGACTCCCGGCGGAAATaGGGCCGGGAGGTGGAGCCC | + |
|
Preference number: 4 (lower is better) Translates to: PSVWACALLWATGHLYLKDSRRK*GREVEP Trigger: GGGCTCCACCTCCCGGCCTCATTTCCGCCGGGAGTC...TTTTAAGTATAGATGCCCGGTGGCCCACAGGAGAGCACAGGCCCAGACTGAGGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059642.17 ENSMUST00000186182.2 |
||
| CDS-3UTR TCA 90 bp | GGCCCAACACCAAAACGCATCCACAGCTGGATAGAAGAGTCCCTCAGTCTGGGCGGCCGCCATCTTCCGTaGTGCGGCAAGCCGCCGACC | + |
|
Preference number: 4 (lower is better) Translates to: GPTPKRIHSWIEESLSLGGRHLP*CGKPPT Trigger: GGTCGGCGGCTTGCCGCATCACGGAAGATGGCGGCC...GCCCAGACTGAGGGACTCTTCTATCCAGCTGTGGATGCGTTTTGGTGTTGGGCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059642.17 ENSMUST00000186182.2 |
||
| CDS-3UTR GCA 90 bp | CTGGGCCTGTGCTCTCCTGTGGGCCACCGGGCATCTATACTTAAAACCCAGAGCCACTCGTCCTTGAGTTaGTCGTACATGCCGGCCGCT | + |
|
Preference number: 4 (lower is better) Translates to: LGLCSPVGHRASILKTQSHSSLS*SYMPAA Trigger: AGCGGCCGGCATGTACGAGCAACTCAAGGACGAGTG...GCTCTGGGTTTTAAGTATAGATGCCCGGTGGCCCACAGGAGAGCACAGGCCCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS-3UTR GCA 90 bp | AGCTGGATAGAAGAGTCCCTCAGTCTGGGCCTGTGCTCTCCTGTGGGCCACCGGAGGAGGGAATGTCTTTaGACAGGATGCTCCACTGGG | + |
|
Preference number: 4 (lower is better) Translates to: SWIEESLSLGLCSPVGHRRRECL*TGCSTG Trigger: CCCAGTGGAGCATCCTGTGCAAAGACATTCCCTCCT...CCGGTGGCCCACAGGAGAGCACAGGCCCAGACTGAGGGACTCTTCTATCCAGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS-3UTR GCA 90 bp | CCCTCAGTCTGGGCCTGTGCTCTCCTGTGGGCCACCGGGCATCTATACTTAAAACACTCGTCCTTGAGTTaGTCGTACATGCCGGCCGCT | + |
|
Preference number: 4 (lower is better) Translates to: PSVWACALLWATGHLYLKHSSLS*SYMPAA Trigger: AGCGGCCGGCATGTACGAGCAACTCAAGGACGAGTG...TTTTAAGTATAGATGCCCGGTGGCCCACAGGAGAGCACAGGCCCAGACTGAGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS-3UTR GCA 90 bp | GCTGGCTCCACACGTCTGTCAGACCCTAGCCTCTCTCTATGGAAAGGCCAGCAACACTCGTCCTTGAGTTaGTCGTACATGCCGGCCGCT | + |
|
Preference number: 4 (lower is better) Translates to: AGSTRLSDPSLSLWKGQQHSSLS*SYMPAA Trigger: AGCGGCCGGCATGTACGAGCAACTCAAGGACGAGTG...TTGCTGGCCTTTCCATAGAGAGAGGCTAGGGTCTGACAGACGTGTGGAGCCAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209034.2 |
||
| CDS-3UTR CCA 90 bp | CCAAAACGCATCCACAGCTGGATAGAAGAGTCCCTCAGTCTGGGCCTGTGCTCTAATGAGGCCGGGAGGTaGAGCCCAAAACTGGAGGCG | + |
|
Preference number: 4 (lower is better) Translates to: PKRIHSWIEESLSLGLCSNEAGR*SPKLEA Trigger: CGCCTCCAGTTTTGGGCTCCACCTCCCGGCCTCATT...AGAGCACAGGCCCAGACTGAGGGACTCTTCTATCCAGCTGTGGATGCGTTTTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059642.17 ENSMUST00000186182.2 |
||
| CDS-3UTR CCA 90 bp | CTGGATAGAAGAGTCCCTCAGTCTGGGCCTGTGCTCTCCTGTGGGCCACCGGGCCGTTCTAATTCTGTGTaGAACTCAGCCACTCGGTTC | + |
|
Preference number: 4 (lower is better) Translates to: LDRRVPQSGPVLSCGPPGRSNSV*NSATRF Trigger: GAACCGAGTGGCTGAGTTCCACACAGAATTAGAACG...GCCCGGTGGCCCACAGGAGAGCACAGGCCCAGACTGAGGGACTCTTCTATCCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS-3UTR TCA 90 bp | AGCTGGATAGAAGAGTCCCTCAGTCTGGGCCTGTGCTCTCCTGTGGGCCACCGGCAAAGTAGTAGCATTTaGGTTGGGCCATGTAGCGCT | + |
|
Preference number: 4 (lower is better) Translates to: SWIEESLSLGLCSPVGHRQSSSI*VGPCSA Trigger: AGCGCTACATGGCCCAACTCAAATGCTACTACTTTG...CCGGTGGCCCACAGGAGAGCACAGGCCCAGACTGAGGGACTCTTCTATCCAGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS-3UTR GCA 90 bp | CCTGGCCCAACACCAAAACGCATCCACAGCTGGATAGAAGAGTCCCTCAGTCTGCACTCGTCCTTGAGTTaGTCGTACATGCCGGCCGCT | + |
|
Preference number: 4 (lower is better) Translates to: PGPTPKRIHSWIEESLSLHSSLS*SYMPAA Trigger: AGCGGCCGGCATGTACGAGCAACTCAAGGACGAGTG...CAGACTGAGGGACTCTTCTATCCAGCTGTGGATGCGTTTTGGTGTTGGGCCAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS-3UTR CCA 90 bp | AGCTGGATAGAAGAGTCCCTCAGTCTGGGCCTGTGCTCTCCTGTGGGCCACCGGCGTTCTAATTCTGTGTaGAACTCAGCCACTCGGTTC | + |
|
Preference number: 4 (lower is better) Translates to: SWIEESLSLGLCSPVGHRRSNSV*NSATRF Trigger: GAACCGAGTGGCTGAGTTCCACACAGAATTAGAACG...CCGGTGGCCCACAGGAGAGCACAGGCCCAGACTGAGGGACTCTTCTATCCAGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS-3UTR GCA 90 bp | CCCTCAGTCTGGGCCTGTGCTCTCCTGTGGGCCACCGGGCATCTATACTTAAAAAGGAGGGAATGTCTTTaGACAGGATGCTCCACTGGG | + |
|
Preference number: 4 (lower is better) Translates to: PSVWACALLWATGHLYLKRRECL*TGCSTG Trigger: CCCAGTGGAGCATCCTGTGCAAAGACATTCCCTCCT...TTTTAAGTATAGATGCCCGGTGGCCCACAGGAGAGCACAGGCCCAGACTGAGGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS-3UTR GCA 90 bp | AGTCTGGGCCTGTGCTCTCCTGTGGGCCACCGGGCATCTATACTTAAAACCCAGAGGAGGGAATGTCTTTaGACAGGATGCTCCACTGGG | + |
|
Preference number: 4 (lower is better) Translates to: SLGLCSPVGHRASILKTQRRECL*TGCSTG Trigger: CCCAGTGGAGCATCCTGTGCAAAGACATTCCCTCCT...CTGGGTTTTAAGTATAGATGCCCGGTGGCCCACAGGAGAGCACAGGCCCAGACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS-3UTR GCA 90 bp | CCAAAACGCATCCACAGCTGGATAGAAGAGTCCCTCAGTCTGGGCCTGTGCTCTAGGAGGGAATGTCTTTaGACAGGATGCTCCACTGGG | + |
|
Preference number: 4 (lower is better) Translates to: PKRIHSWIEESLSLGLCSRRECL*TGCSTG Trigger: CCCAGTGGAGCATCCTGTGCAAAGACATTCCCTCCT...AGAGCACAGGCCCAGACTGAGGGACTCTTCTATCCAGCTGTGGATGCGTTTTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS-3UTR CCA 90 bp | CCCTCAGTCTGGGCCTGTGCTCTCCTGTGGGCCACCGGGCATCTATACTTAAAATTTGGTCCCCGTGGTTaGCAGGAAATTGAGCTCAAG | + |
|
Preference number: 4 (lower is better) Translates to: PSVWACALLWATGHLYLKFGPRG*QEIELK Trigger: CTTGAGCTCAATTTCCTGCCAACCACGGGGACCAAA...TTTTAAGTATAGATGCCCGGTGGCCCACAGGAGAGCACAGGCCCAGACTGAGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS-3UTR CCA 90 bp | CTGGGCCTGTGCTCTCCTGTGGGCCACCGGGCATCTATACTTAAAACCCAGAGCCGTTCTAATTCTGTGTaGAACTCAGCCACTCGGTTC | + |
|
Preference number: 4 (lower is better) Translates to: LGLCSPVGHRASILKTQSRSNSV*NSATRF Trigger: GAACCGAGTGGCTGAGTTCCACACAGAATTAGAACG...GCTCTGGGTTTTAAGTATAGATGCCCGGTGGCCCACAGGAGAGCACAGGCCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS-3UTR TCA 90 bp | GGCCCAACACCAAAACGCATCCACAGCTGGATAGAAGAGTCCCTCAGTCTGGGCCAAAGTAGTAGCATTTaGGTTGGGCCATGTAGCGCT | + |
|
Preference number: 4 (lower is better) Translates to: GPTPKRIHSWIEESLSLGQSSSI*VGPCSA Trigger: AGCGCTACATGGCCCAACTCAAATGCTACTACTTTG...GCCCAGACTGAGGGACTCTTCTATCCAGCTGTGGATGCGTTTTGGTGTTGGGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS-3UTR TCA 90 bp | ACTAGCCATATCCACCGCCCTGGTCAAGCCTCAGACAATCATCTCCAGCTGCCGCAAAGTAGTAGCATTTaGGTTGGGCCATGTAGCGCT | + |
|
Preference number: 4 (lower is better) Translates to: TSHIHRPGQASDNHLQLPQSSSI*VGPCSA Trigger: AGCGCTACATGGCCCAACTCAAATGCTACTACTTTG...CGGCAGCTGGAGATGATTGTCTGAGGCTTGACCAGGGCGGTGGATATGGCTAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209034.2 |
||
| 3UTR CAA 72 bp | ATGGAAAGGCCAGCAAGCTCAGAGAGGCTGAGCCACTaGCCTAGGTTTAGTCATGGGCAGTCTTTGTTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: MERPASSERLSH*PRFSHGQSLFC Trigger: GCAGAACAAAGACTGCCCATGACTAAACCTAGGCAAGTGGCTCAGCCTCTCTGAGCTTGCTGGCCTTTCCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209034.2 |
||
| CDS-3UTR TCA 90 bp | CCCAACACCAAAACGCATCCACAGCTGGATAGAAGAGTCCCTCAGTCTGGGCCTCAAAGTAGTAGCATTTaGGTTGGGCCATGTAGCGCT | + |
|
Preference number: 4 (lower is better) Translates to: PNTKTHPQLDRRVPQSGPQSSSI*VGPCSA Trigger: AGCGCTACATGGCCCAACTCAAATGCTACTACTTTG...AGGCCCAGACTGAGGGACTCTTCTATCCAGCTGTGGATGCGTTTTGGTGTTGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS-3UTR CCA 90 bp | TCTAGTCCCTGGCCCAACACCAAAACGCATCCACAGCTGGATAGAAGAGTCCCTTTTGGTCCCCGTGGTTaGCAGGAAATTGAGCTCAAG | + |
|
Preference number: 4 (lower is better) Translates to: SSPWPNTKTHPQLDRRVPFGPRG*QEIELK Trigger: CTTGAGCTCAATTTCCTGCCAACCACGGGGACCAAA...AGGGACTCTTCTATCCAGCTGTGGATGCGTTTTGGTGTTGGGCCAGGGACTAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS-3UTR CCA 90 bp | CTGTGCTCTCCTGTGGGCCACCGGGCATCTATACTTAAAACCCAGAGCAATGACTTTGGTCCCCGTGGTTaGCAGGAAATTGAGCTCAAG | + |
|
Preference number: 4 (lower is better) Translates to: LCSPVGHRASILKTQSNDFGPRG*QEIELK Trigger: CTTGAGCTCAATTTCCTGCCAACCACGGGGACCAAA...GTCATTGCTCTGGGTTTTAAGTATAGATGCCCGGTGGCCCACAGGAGAGCACAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS-3UTR CCA 90 bp | CTGGGCCTGTGCTCTCCTGTGGGCCACCGGGCATCTATACTTAAAACCCAGAGCTGGTCTGGATGTCCTTaGCAGGTAATCGTTCTAATT | + |
|
Preference number: 4 (lower is better) Translates to: LGLCSPVGHRASILKTQSWSGCP*QVIVLI Trigger: AATTAGAACGATTACCTGCCAAGGACATCCAGACCA...GCTCTGGGTTTTAAGTATAGATGCCCGGTGGCCCACAGGAGAGCACAGGCCCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS-3UTR TCA 90 bp | TCTAGTCCCTGGCCCAACACCAAAACGCATCCACAGCTGGATAGAAGAGTCCCTTGGTTGGCAGGAAATTaGGCTCAAGCAGAACCAACT | + |
|
Preference number: 4 (lower is better) Translates to: SSPWPNTKTHPQLDRRVPWLAGN*AQAEPT Trigger: AGTTGGTTCTGCTTGAGCTCAATTTCCTGCCAACCA...AGGGACTCTTCTATCCAGCTGTGGATGCGTTTTGGTGTTGGGCCAGGGACTAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS-3UTR CCA 90 bp | GTTAATCTGCCTTTATTGAAGGCCAGCCTATACTGGGTTTGTTGGACTAGCCATAATGAGGCCGGGAGGTaGAGCCCAAAACTGGAGGCG | + |
|
Preference number: 4 (lower is better) Translates to: VNLPLLKASLYWVCWTSHNEAGR*SPKLEA Trigger: CGCCTCCAGTTTTGGGCTCCACCTCCCGGCCTCATT...ATGGCTAGTCCAACAAACCCAGTATAGGCTGGCCTTCAATAAAGGCAGATTAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059642.17 ENSMUST00000186182.2 |
||
| CDS-3UTR CCA 90 bp | CCCTCAGTCTGGGCCTGTGCTCTCCTGTGGGCCACCGGGCATCTATACTTAAAATGGTCTGGATGTCCTTaGCAGGTAATCGTTCTAATT | + |
|
Preference number: 4 (lower is better) Translates to: PSVWACALLWATGHLYLKWSGCP*QVIVLI Trigger: AATTAGAACGATTACCTGCCAAGGACATCCAGACCA...TTTTAAGTATAGATGCCCGGTGGCCCACAGGAGAGCACAGGCCCAGACTGAGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS-3UTR CCA 90 bp | CCTGGCCCAACACCAAAACGCATCCACAGCTGGATAGAAGAGTCCCTCAGTCTGCCCAACCTCGCTTCTTaGCATAGTCTGTCATCTTTT | + |
|
Preference number: 4 (lower is better) Translates to: PGPTPKRIHSWIEESLSLPNLAS*HSLSSF Trigger: AAAAGATGACAGACTATGCCAAGAAGCGAGGTTGGG...CAGACTGAGGGACTCTTCTATCCAGCTGTGGATGCGTTTTGGTGTTGGGCCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 |
||
| CDS-3UTR CCA 90 bp | CCAAAACGCATCCACAGCTGGATAGAAGAGTCCCTCAGTCTGGGCCTGTGCTCTCCCAACCTCGCTTCTTaGCATAGTCTGTCATCTTTT | + |
|
Preference number: 4 (lower is better) Translates to: PKRIHSWIEESLSLGLCSPNLAS*HSLSSF Trigger: AAAAGATGACAGACTATGCCAAGAAGCGAGGTTGGG...AGAGCACAGGCCCAGACTGAGGGACTCTTCTATCCAGCTGTGGATGCGTTTTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 |
||
| 3UTR CAA 72 bp | CCTATGCAGCTACCTCCCAGTGTACCATGGCTCCTTTaGTCATGGATTACTGCCACTCTGTGCCTCAGTTTC | + |
|
Preference number: 4 (lower is better) Translates to: PMQLPPSVPWLL*SWITATLCLSF Trigger: GAAACTGAGGCACAGAGTGGCAGTAATCCATGACAAAAGGAGCCATGGTACACTGGGAGGTAGCTGCATAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209034.2 |
||
| CDS-3UTR CCA 90 bp | CCCAACACCAAAACGCATCCACAGCTGGATAGAAGAGTCCCTCAGTCTGGGCCTTGGTCTGGATGTCCTTaGCAGGTAATCGTTCTAATT | + |
|
Preference number: 4 (lower is better) Translates to: PNTKTHPQLDRRVPQSGPWSGCP*QVIVLI Trigger: AATTAGAACGATTACCTGCCAAGGACATCCAGACCA...AGGCCCAGACTGAGGGACTCTTCTATCCAGCTGTGGATGCGTTTTGGTGTTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS-3UTR CCA 90 bp | CTGTGCTCTCCTGTGGGCCACCGGGCATCTATACTTAAAACCCAGAGCAATGACCTCCAGCCACCTTCTTaGCATAGTCTGTCATCTTTT | + |
|
Preference number: 4 (lower is better) Translates to: LCSPVGHRASILKTQSNDLQPPS*HSLSSF Trigger: AAAAGATGACAGACTATGCCAAGAAGGTGGCTGGAG...GTCATTGCTCTGGGTTTTAAGTATAGATGCCCGGTGGCCCACAGGAGAGCACAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209034.2 |
||
| CDS-3UTR GCA 90 bp | GTTAATCTGCCTTTATTGAAGGCCAGCCTATACTGGGTTTGTTGGACTAGCCATTGTCTTTGCACAGGATaGTCCACTGGGCCCCGATCT | + |
|
Preference number: 4 (lower is better) Translates to: VNLPLLKASLYWVCWTSHCLCTG*STGPRS Trigger: AGATCGGGGCCCAGTGGAGCATCCTGTGCAAAGACA...ATGGCTAGTCCAACAAACCCAGTATAGGCTGGCCTTCAATAAAGGCAGATTAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS-3UTR CCA 90 bp | TCTAGTCCCTGGCCCAACACCAAAACGCATCCACAGCTGGATAGAAGAGTCCCTTGGTCTGGATGTCCTTaGCAGGTAATCGTTCTAATT | + |
|
Preference number: 4 (lower is better) Translates to: SSPWPNTKTHPQLDRRVPWSGCP*QVIVLI Trigger: AATTAGAACGATTACCTGCCAAGGACATCCAGACCA...AGGGACTCTTCTATCCAGCTGTGGATGCGTTTTGGTGTTGGGCCAGGGACTAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| 3UTR CAA 72 bp | ACCATTACCAACAAGTTGCTGCTTTCTAAGGAGTTCTaGGGGCAAAGTCAAGATGCGGTATTCCTTAGAGCA | + |
|
Preference number: 4 (lower is better) Translates to: TITNKLLLSKEF*GQSQDAVFLRA Trigger: TGCTCTAAGGAATACCGCATCTTGACTTTGCCCCAAGAACTCCTTAGAAAGCAGCAACTTGTTGGTAATGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209034.2 |
||
| CDS TCA 90 bp | GGTGGTCGACCCGTTCACCGTAGCCGCTGTGGCCGCCATCTTCCGTaGTGCGGCAAGCCGCCGACCCGACTTACGGCAGCGACGCCGGGC | + |
|
Preference number: 5 (lower is better) Translates to: GGRPVHRSRCGRHLP*CGKPPTRLTAATPG Trigger: GCCCGGCGTCGCTGCCGTAAGTCGGGTCGGCGGCTTGCCGCATCACGGAAGATGGCGGCCACAGCGGCTACGGTGAACGGGTCGACCACC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059642.17 ENSMUST00000186182.2 |
||
| CDS CCA 90 bp | GTTGCTCGTACATGCCGGCCGCTGCCTGCAGGATCCCGACCGAGGTaGCCGCGGGTCCGGAGCTCGAGACGGTGGTCGACCCGTTCACCG | + |
|
Preference number: 5 (lower is better) Translates to: VARTCRPLPAGSRPR*PRVRSSRRWSTRSP Trigger: CGGTGAACGGGTCGACCACCGTCTCGAGCTCCGGACCCGCGGCCACCTCGGTCGGGATCCTGCAGGCAGCGGCCGGCATGTACGAGCAAC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS CCA 90 bp | ATGCGGCAAGCCGCCGACCCGACTTACGGCAGCGACGCCGGGCAATaGACTCCCGGCGGAAATGAGGCCGGGAGGTGGAGCCCAAAACTG | + |
|
Preference number: 5 (lower is better) Translates to: MRQAADPTYGSDAGQ*TPGGNEAGRWSPKL Trigger: CAGTTTTGGGCTCCACCTCCCGGCCTCATTTCCGCCGGGAGTCCATTGCCCGGCGTCGCTGCCGTAAGTCGGGTCGGCGGCTTGCCGCAT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059642.17 ENSMUST00000186182.2 |
||
| CDS TCA 90 bp | CCCGACTTACGGCAGCGACGCCGGGCAATGGACTCCCGGCGGAAATaGGGCCGGGAGGTGGAGCCCAAAACTGGAGGCGGAGCTACCACT | + |
|
Preference number: 5 (lower is better) Translates to: PDLRQRRRAMDSRRK*GREVEPKTGGGATT Trigger: AGTGGTAGCTCCGCCTCCAGTTTTGGGCTCCACCTCCCGGCCTCATTTCCGCCGGGAGTCCATTGCCCGGCGTCGCTGCCGTAAGTCGGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059642.17 ENSMUST00000186182.2 |
||
| CDS-3UTR CAA 90 bp | AGCTGGATAGAAGAGTCCCTCAGTCTGGGCCTGTGCTCTCCTGTGGGCCACCGGCCACTCGTCCTTGAGTaGCTCGTACATGCCGGCCGC | + |
|
Preference number: 5 (lower is better) Translates to: SWIEESLSLGLCSPVGHRPLVLE*LVHAGR Trigger: GCGGCCGGCATGTACGAGCAACTCAAGGACGAGTGG...CCGGTGGCCCACAGGAGAGCACAGGCCCAGACTGAGGGACTCTTCTATCCAGCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS-3UTR CAA 90 bp | CCCAACACCAAAACGCATCCACAGCTGGATAGAAGAGTCCCTCAGTCTGGGCCTCCACTCGTCCTTGAGTaGCTCGTACATGCCGGCCGC | + |
|
Preference number: 5 (lower is better) Translates to: PNTKTHPQLDRRVPQSGPPLVLE*LVHAGR Trigger: GCGGCCGGCATGTACGAGCAACTCAAGGACGAGTGG...AGGCCCAGACTGAGGGACTCTTCTATCCAGCTGTGGATGCGTTTTGGTGTTGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS-3UTR CAA 90 bp | CCTGGCCCAACACCAAAACGCATCCACAGCTGGATAGAAGAGTCCCTCAGTCTGCCACTCGTCCTTGAGTaGCTCGTACATGCCGGCCGC | + |
|
Preference number: 5 (lower is better) Translates to: PGPTPKRIHSWIEESLSLPLVLE*LVHAGR Trigger: GCGGCCGGCATGTACGAGCAACTCAAGGACGAGTGG...CAGACTGAGGGACTCTTCTATCCAGCTGTGGATGCGTTTTGGTGTTGGGCCAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS-3UTR CAA 90 bp | CTGGATAGAAGAGTCCCTCAGTCTGGGCCTGTGCTCTCCTGTGGGCCACCGGGCGTAGTAGCATTTGAGTaGGGCCATGTAGCGCTCGAA | + |
|
Preference number: 5 (lower is better) Translates to: LDRRVPQSGPVLSCGPPGVVAFE*GHVALE Trigger: TTCGAGCGCTACATGGCCCAACTCAAATGCTACTAC...GCCCGGTGGCCCACAGGAGAGCACAGGCCCAGACTGAGGGACTCTTCTATCCAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS-3UTR CAA 90 bp | CTGGATAGAAGAGTCCCTCAGTCTGGGCCTGTGCTCTCCTGTGGGCCACCGGGCTACTCGATGACTTGTTaGGCCAGTTCAGTAGAGGGG | + |
|
Preference number: 5 (lower is better) Translates to: LDRRVPQSGPVLSCGPPGYSMTC*ASSVEG Trigger: CCCCTCTACTGAACTGGCCAAACAAGTCATCGAGTA...GCCCGGTGGCCCACAGGAGAGCACAGGCCCAGACTGAGGGACTCTTCTATCCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 |
||
| CDS-3UTR CAA 90 bp | CTGTGCTCTCCTGTGGGCCACCGGGCATCTATACTTAAAACCCAGAGCAATGACCCACTCGTCCTTGAGTaGCTCGTACATGCCGGCCGC | + |
|
Preference number: 5 (lower is better) Translates to: LCSPVGHRASILKTQSNDPLVLE*LVHAGR Trigger: GCGGCCGGCATGTACGAGCAACTCAAGGACGAGTGG...GTCATTGCTCTGGGTTTTAAGTATAGATGCCCGGTGGCCCACAGGAGAGCACAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS-3UTR CAA 90 bp | AGCTGGATAGAAGAGTCCCTCAGTCTGGGCCTGTGCTCTCCTGTGGGCCACCGGTTGGTCTGGATGTCCTaGGCAGGTAATCGTTCTAAT | + |
|
Preference number: 5 (lower is better) Translates to: SWIEESLSLGLCSPVGHRLVWMS*AGNRSN Trigger: ATTAGAACGATTACCTGCCAAGGACATCCAGACCAA...CCGGTGGCCCACAGGAGAGCACAGGCCCAGACTGAGGGACTCTTCTATCCAGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS-3UTR CAA 90 bp | GGCCCAACACCAAAACGCATCCACAGCTGGATAGAAGAGTCCCTCAGTCTGGGCGTAGTAGCATTTGAGTaGGGCCATGTAGCGCTCGAA | + |
|
Preference number: 5 (lower is better) Translates to: GPTPKRIHSWIEESLSLGVVAFE*GHVALE Trigger: TTCGAGCGCTACATGGCCCAACTCAAATGCTACTAC...GCCCAGACTGAGGGACTCTTCTATCCAGCTGTGGATGCGTTTTGGTGTTGGGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS-3UTR CAA 90 bp | CCCTCAGTCTGGGCCTGTGCTCTCCTGTGGGCCACCGGGCATCTATACTTAAAATACTCGATGACTTGTTaGGCCAGTTCAGTAGAGGGG | + |
|
Preference number: 5 (lower is better) Translates to: PSVWACALLWATGHLYLKYSMTC*ASSVEG Trigger: CCCCTCTACTGAACTGGCCAAACAAGTCATCGAGTA...TTTTAAGTATAGATGCCCGGTGGCCCACAGGAGAGCACAGGCCCAGACTGAGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 |
||
| CDS-3UTR CAA 90 bp | CCTGGCCCAACACCAAAACGCATCCACAGCTGGATAGAAGAGTCCCTCAGTCTGGTGGTTGGCAGGAAATaGAGCTCAAGCAGAACCAAC | + |
|
Preference number: 5 (lower is better) Translates to: PGPTPKRIHSWIEESLSLVVGRK*SSSRTN Trigger: GTTGGTTCTGCTTGAGCTCAATTTCCTGCCAACCAC...CAGACTGAGGGACTCTTCTATCCAGCTGTGGATGCGTTTTGGTGTTGGGCCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS-3UTR CAA 90 bp | CCTGGCCCAACACCAAAACGCATCCACAGCTGGATAGAAGAGTCCCTCAGTCTGTACTCGATGACTTGTTaGGCCAGTTCAGTAGAGGGG | + |
|
Preference number: 5 (lower is better) Translates to: PGPTPKRIHSWIEESLSLYSMTC*ASSVEG Trigger: CCCCTCTACTGAACTGGCCAAACAAGTCATCGAGTA...CAGACTGAGGGACTCTTCTATCCAGCTGTGGATGCGTTTTGGTGTTGGGCCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 |
||
| CDS-3UTR CAA 90 bp | TCTAGTCCCTGGCCCAACACCAAAACGCATCCACAGCTGGATAGAAGAGTCCCTGTAGTAGCATTTGAGTaGGGCCATGTAGCGCTCGAA | + |
|
Preference number: 5 (lower is better) Translates to: SSPWPNTKTHPQLDRRVPVVAFE*GHVALE Trigger: TTCGAGCGCTACATGGCCCAACTCAAATGCTACTAC...AGGGACTCTTCTATCCAGCTGTGGATGCGTTTTGGTGTTGGGCCAGGGACTAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS-3UTR CAA 90 bp | CCCTCAGTCTGGGCCTGTGCTCTCCTGTGGGCCACCGGGCATCTATACTTAAAATTGGTCTGGATGTCCTaGGCAGGTAATCGTTCTAAT | + |
|
Preference number: 5 (lower is better) Translates to: PSVWACALLWATGHLYLKLVWMS*AGNRSN Trigger: ATTAGAACGATTACCTGCCAAGGACATCCAGACCAA...TTTTAAGTATAGATGCCCGGTGGCCCACAGGAGAGCACAGGCCCAGACTGAGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS-3UTR CAA 90 bp | CCCAACACCAAAACGCATCCACAGCTGGATAGAAGAGTCCCTCAGTCTGGGCCTTTGGTCTGGATGTCCTaGGCAGGTAATCGTTCTAAT | + |
|
Preference number: 5 (lower is better) Translates to: PNTKTHPQLDRRVPQSGPLVWMS*AGNRSN Trigger: ATTAGAACGATTACCTGCCAAGGACATCCAGACCAA...AGGCCCAGACTGAGGGACTCTTCTATCCAGCTGTGGATGCGTTTTGGTGTTGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS-3UTR CAA 90 bp | TGTCCCCCTCGACTATCACACAGTGCACTGGCACTGTTAGGACAGGGAACAATATTGGTCTGGATGTCCTaGGCAGGTAATCGTTCTAAT | + |
|
Preference number: 5 (lower is better) Translates to: CPPRLSHSALALLGQGTILVWMS*AGNRSN Trigger: ATTAGAACGATTACCTGCCAAGGACATCCAGACCAA...TATTGTTCCCTGTCCTAACAGTGCCAGTGCACTGTGTGATAGTCGAGGGGGACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000209034.2 |
||
| CDS CCA 72 bp | ACATGCCGGCCGCTGCCTGCAGGATCCCGACCGAGGTaGCCGCGGGTCCGGAGCTCGAGACGGTGGTCGACC | + |
|
Preference number: 6 (lower is better) Translates to: TCRPLPAGSRPR*PRVRSSRRWST Trigger: GGTCGACCACCGTCTCGAGCTCCGGACCCGCGGCCACCTCGGTCGGGATCCTGCAGGCAGCGGCCGGCATGT 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000059642.17 ENSMUST00000182328.8 ENSMUST00000186182.2 ENSMUST00000209034.2 |
||
| CDS CCA 72 bp | GCCGCCGACCCGACTTACGGCAGCGACGCCGGGCAATaGACTCCCGGCGGAAATGAGGCCGGGAGGTGGAGC | + |
|
Preference number: 6 (lower is better) Translates to: AADPTYGSDAGQ*TPGGNEAGRWS Trigger: GCTCCACCTCCCGGCCTCATTTCCGCCGGGAGTCCATTGCCCGGCGTCGCTGCCGTAAGTCGGGTCGGCGGC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059642.17 ENSMUST00000186182.2 |
||
| CDS TCA 72 bp | CGGCAGCGACGCCGGGCAATGGACTCCCGGCGGAAATaGGGCCGGGAGGTGGAGCCCAAAACTGGAGGCGGA | + |
|
Preference number: 6 (lower is better) Translates to: RQRRRAMDSRRK*GREVEPKTGGG Trigger: TCCGCCTCCAGTTTTGGGCTCCACCTCCCGGCCTCATTTCCGCCGGGAGTCCATTGCCCGGCGTCGCTGCCG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059642.17 ENSMUST00000186182.2 |
||
| CDS TCA 72 bp | CCCGTTCACCGTAGCCGCTGTGGCCGCCATCTTCCGTaGTGCGGCAAGCCGCCGACCCGACTTACGGCAGCG | + |
|
Preference number: 6 (lower is better) Translates to: PVHRSRCGRHLP*CGKPPTRLTAA Trigger: CGCTGCCGTAAGTCGGGTCGGCGGCTTGCCGCATCACGGAAGATGGCGGCCACAGCGGCTACGGTGAACGGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059642.17 ENSMUST00000186182.2 |
||
| CDS CCA 72 bp | GGGCAATGGACTCCCGGCGGAAATGAGGCCGGGAGGTaGAGCCCAAAACTGGAGGCGGAGCTACCACTGCCA | + |
|
Preference number: 6 (lower is better) Translates to: GQWTPGGNEAGR*SPKLEAELPLP Trigger: TGGCAGTGGTAGCTCCGCCTCCAGTTTTGGGCTCCACCTCCCGGCCTCATTTCCGCCGGGAGTCCATTGCCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059642.17 ENSMUST00000186182.2 |
||