Pregenerated sensors for PSMD7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039067Ensembl transcript IDs: ENSMUST00000044106.6
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TATCGTAGGGCTGAGATCCGTCCTTTTGTCCACTCATCTCCACAATaGCACAGCAAGGGTGACCAGGGCAGAGCGCTTGTCCACAAGCAC | + |
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Preference number: 1 (lower is better) Translates to: YRRAEIRPFVHSSPQ*HSKGDQGRALVHKH Trigger: GTGCTTGTGGACAAGCGCTCTGCCCTGGTCACCCTTGCTGTGGCATTGTGGAGATGAGTGGACAAAAGGACGGATCTCAGCCCTACGATA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044106.6 |
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| 3UTR TCA 90 bp | GATCCGTCCTTTTGTCCACTCATCTCCACAATGCCACAGCAAGGGTaGCCAGGGCAGAGCGCTTGTCCACAAGCACTGAATGTGACAAAG | + |
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Preference number: 1 (lower is better) Translates to: DPSFCPLISTMPQQG*PGQSACPQALNVTK Trigger: CTTTGTCACATTCAGTGCTTGTGGACAAGCGCTCTGCCCTGGTCACCCTTGCTGTGGCATTGTGGAGATGAGTGGACAAAAGGACGGATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044106.6 |
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| 3UTR-3UTR TCA 90 bp | ACACCTGAGCCACCACACCCCCAACTCATGCAACTGAAGCTGTATCGTAGGGCTATGCCACAGCAAGGGTaGCCAGGGCAGAGCGCTTGT | + |
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Preference number: 2 (lower is better) Translates to: TPEPPHPQLMQLKLYRRAMPQQG*PGQSAC Trigger: ACAAGCGCTCTGCCCTGGTCACCCTTGCTGTGGCAT...AGCCCTACGATACAGCTTCAGTTGCATGAGTTGGGGGTGTGGTGGCTCAGGTGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044106.6 |
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| 3UTR CAA 90 bp | GGTCTCAAAAGTTCACAAGGGTCCAAGCTCAAGTGTTGGGCGGCATaGTATGGGATCCATGAATTCCATTTAGCAATTATGAAAATTACA | + |
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Preference number: 2 (lower is better) Translates to: GLKSSQGSKLKCWAA*YGIHEFHLAIMKIT Trigger: TGTAATTTTCATAATTGCTAAATGGAATTCATGGATCCCATACAATGCCGCCCAACACTTGAGCTTGGACCCTTGTGAACTTTTGAGACC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044106.6 |
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| 3UTR GCA 72 bp | GCTGAGATCCGTCCTTTTGTCCACTCATCTCCACAATaGCACAGCAAGGGTGACCAGGGCAGAGCGCTTGTC | + |
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Preference number: 3 (lower is better) Translates to: AEIRPFVHSSPQ*HSKGDQGRALV Trigger: GACAAGCGCTCTGCCCTGGTCACCCTTGCTGTGGCATTGTGGAGATGAGTGGACAAAAGGACGGATCTCAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044106.6 |
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| 3UTR-3UTR CAA 90 bp | CCACACCCCCAACTCATGCAACTGAAGCTGTATCGTAGGGCTGAGATCCGTCCTACCAGGGCAGAGCGCTaGTCCACAAGCACTGAATGT | + |
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Preference number: 3 (lower is better) Translates to: PHPQLMQLKLYRRAEIRPTRAER*STSTEC Trigger: ACATTCAGTGCTTGTGGACAAGCGCTCTGCCCTGGT...AGGACGGATCTCAGCCCTACGATACAGCTTCAGTTGCATGAGTTGGGGGTGTGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044106.6 |
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| 3UTR TCA 72 bp | GGACACCTGAGCCACCACACCCCCAACTCATGCAACTaGAGCTGTATCGTAGGGCTGAGATCCGTCCTTTTG | + |
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Preference number: 3 (lower is better) Translates to: GHLSHHTPNSCN*SCIVGLRSVLL Trigger: CAAAAGGACGGATCTCAGCCCTACGATACAGCTTCAGTTGCATGAGTTGGGGGTGTGGTGGCTCAGGTGTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044106.6 |
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| 3UTR TCA 72 bp | AAAGGAAGAGTGCCCAAGGCTAGGTTGTTCTCCTCATaGAGTCGGACACCTGAGCCACCACACCCCCAACTC | + |
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Preference number: 3 (lower is better) Translates to: KGRVPKARLFSS*SRTPEPPHPQL Trigger: GAGTTGGGGGTGTGGTGGCTCAGGTGTCCGACTTCATGAGGAGAACAACCTAGCCTTGGGCACTCTTCCTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044106.6 |
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| 3UTR TCA 72 bp | TTTTGTCCACTCATCTCCACAATGCCACAGCAAGGGTaGCCAGGGCAGAGCGCTTGTCCACAAGCACTGAAT | + |
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Preference number: 3 (lower is better) Translates to: FCPLISTMPQQG*PGQSACPQALN Trigger: ATTCAGTGCTTGTGGACAAGCGCTCTGCCCTGGTCACCCTTGCTGTGGCATTGTGGAGATGAGTGGACAAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044106.6 |
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| 3UTR-3UTR CAA 90 bp | CTTGGACCCCAAGCCCTAAGAATGCTAGTTACAGGTCCAAAAGGTGGTGTGGTCAAGTGTTGGGCGGCATaGTATGGGATCCATGAATTC | + |
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Preference number: 3 (lower is better) Translates to: LGPQALRMLVTGPKGGVVKCWAA*YGIHEF Trigger: GAATTCATGGATCCCATACAATGCCGCCCAACACTT...GACCACACCACCTTTTGGACCTGTAACTAGCATTCTTAGGGCTTGGGGTCCAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044106.6 |
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| 3UTR CCA 72 bp | CCAAGCCCTAAGAATGCTAGTTACAGGTCCAAAAGGTaGTGTGGTCTCAAAAGTTCACAAGGGTCCAAGCTC | + |
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Preference number: 3 (lower is better) Translates to: PSPKNASYRSKR*CGLKSSQGSKL Trigger: GAGCTTGGACCCTTGTGAACTTTTGAGACCACACCACCTTTTGGACCTGTAACTAGCATTCTTAGGGCTTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044106.6 |
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| CDS-3UTR CCA 90 bp | ACTCATCTCCACAATGCCACAGCAAGGGTGACCAGGGCAGAGCGCTTGTCCACATGGGCAGCTTGCCGCTaGCTACCTTCTCCAGGTAGC | + |
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Preference number: 4 (lower is better) Translates to: THLHNATARVTRAERLSTWAACR*LPSPGS Trigger: GCTACCTGGAGAAGGTAGCCAGCGGCAAGCTGCCCA...TGTGGACAAGCGCTCTGCCCTGGTCACCCTTGCTGTGGCATTGTGGAGATGAGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044106.6 |
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| CDS-3UTR GCA 90 bp | TCCACTCATCTCCACAATGCCACAGCAAGGGTGACCAGGGCAGAGCGCTTGTCCTTCCTCCGCCTCCTCTaGTCCAATCTCGCTAGTCAC | + |
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Preference number: 4 (lower is better) Translates to: STHLHNATARVTRAERLSFLRLL*SNLASH Trigger: GTGACTAGCGAGATTGGAGCAGAGGAGGCGGAGGAA...GGACAAGCGCTCTGCCCTGGTCACCCTTGCTGTGGCATTGTGGAGATGAGTGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044106.6 |
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| 3UTR CAA 72 bp | CACAATGCCACAGCAAGGGTGACCAGGGCAGAGCGCTaGTCCACAAGCACTGAATGTGACAAAGGACCCTCC | + |
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Preference number: 4 (lower is better) Translates to: HNATARVTRAER*STSTECDKGPS Trigger: GGAGGGTCCTTTGTCACATTCAGTGCTTGTGGACAAGCGCTCTGCCCTGGTCACCCTTGCTGTGGCATTGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044106.6 |
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| CDS-3UTR TCA 90 bp | AGCGCTTGTCCACAAGCACTGAATGTGACAAAGGACCCTCCTAGTGGCACACGGGGCGTCCCATCGTCATaGACTTCCTCCACTGAGATG | + |
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Preference number: 4 (lower is better) Translates to: SACPQALNVTKDPPSGTRGVPSS*TSSTEM Trigger: CATCTCAGTGGAGGAAGTTCATGACGATGGGACGCC...CCGTGTGCCACTAGGAGGGTCCTTTGTCACATTCAGTGCTTGTGGACAAGCGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044106.6 |
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| CDS-3UTR GCA 90 bp | TGTATCGTAGGGCTGAGATCCGTCCTTTTGTCCACTCATCTCCACAATGCCACAGCCTTGACAAACTCCTaGAGGCTGGCGTCCGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: CIVGLRSVLLSTHLHNATALTNS*RLASGS Trigger: GCTGCCGGACGCCAGCCTGCAGGAGTTTGTCAAGGC...TGTGGCATTGTGGAGATGAGTGGACAAAAGGACGGATCTCAGCCCTACGATACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044106.6 |
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| CDS-3UTR TCA 90 bp | AGCGCTTGTCCACAAGCACTGAATGTGACAAAGGACCCTCCTAGTGGCACACGGATGAACTTCCTCCACTaGGATGTAGGCTTCGGTGGG | + |
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Preference number: 4 (lower is better) Translates to: SACPQALNVTKDPPSGTRMNFLH*DVGFGG Trigger: CCCACCGAAGCCTACATCTCAGTGGAGGAAGTTCAT...CCGTGTGCCACTAGGAGGGTCCTTTGTCACATTCAGTGCTTGTGGACAAGCGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044106.6 |
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| CDS-3UTR CCA 90 bp | ACTCATCTCCACAATGCCACAGCAAGGGTGACCAGGGCAGAGCGCTTGTCCACAAGCTGGTATATGATCTaGTGGTTGATGGGCAGCTTG | + |
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Preference number: 4 (lower is better) Translates to: THLHNATARVTRAERLSTSWYMI*WLMGSL Trigger: CAAGCTGCCCATCAACCACCAGATCATATACCAGCT...TGTGGACAAGCGCTCTGCCCTGGTCACCCTTGCTGTGGCATTGTGGAGATGAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044106.6 |
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| CDS-3UTR TCA 90 bp | CCACACCCCCAACTCATGCAACTGAAGCTGTATCGTAGGGCTGAGATCCGTCCTGATAATGACCAATACTaGGTTGGGGCAGTATCTCTT | + |
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Preference number: 4 (lower is better) Translates to: PHPQLMQLKLYRRAEIRPDNDQY*VGAVSL Trigger: AAGAGATACTGCCCCAACTCAGTATTGGTCATTATC...AGGACGGATCTCAGCCCTACGATACAGCTTCAGTTGCATGAGTTGGGGGTGTGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044106.6 |
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| CDS-3UTR CCA 90 bp | TGTATCGTAGGGCTGAGATCCGTCCTTTTGTCCACTCATCTCCACAATGCCACACCAACTACCCGCTTCTaGTTTCCAACCTTGCCAATT | + |
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Preference number: 4 (lower is better) Translates to: CIVGLRSVLLSTHLHNATPTTRF*FPTLPI Trigger: AATTGGCAAGGTTGGAAACCAGAAGCGGGTAGTTGG...TGTGGCATTGTGGAGATGAGTGGACAAAAGGACGGATCTCAGCCCTACGATACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044106.6 |
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| CDS-3UTR CCA 90 bp | ACAATACATGGCCTTGGACCCCAAGCCCTAAGAATGCTAGTTACAGGTCCAAAAAGTTTGGGGCCTGTGTaGTACCACCCAACTATCCTT | + |
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Preference number: 4 (lower is better) Translates to: TIHGLGPQALRMLVTGPKSLGPV*YHPTIL Trigger: AAGGATAGTTGGGTGGTACCACACAGGCCCCAAACT...TTTTGGACCTGTAACTAGCATTCTTAGGGCTTGGGGTCCAAGGCCATGTATTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044106.6 |
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| 3UTR CAA 72 bp | AGTTCACAAGGGTCCAAGCTCAAGTGTTGGGCGGCATaGTATGGGATCCATGAATTCCATTTAGCAATTATG | + |
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Preference number: 4 (lower is better) Translates to: SSQGSKLKCWAA*YGIHEFHLAIM Trigger: CATAATTGCTAAATGGAATTCATGGATCCCATACAATGCCGCCCAACACTTGAGCTTGGACCCTTGTGAACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044106.6 |
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| CDS-3UTR GCA 90 bp | ATGCAACTGAAGCTGTATCGTAGGGCTGAGATCCGTCCTTTTGTCCACTCATCTATCTCGCTAGTCACATaGTCAAAAGTTTTTGACGTT | + |
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Preference number: 4 (lower is better) Translates to: MQLKLYRRAEIRPFVHSSISLVT*SKVFDV Trigger: AACGTCAAAAACTTTTGAGCATGTGACTAGCGAGAT...AGATGAGTGGACAAAAGGACGGATCTCAGCCCTACGATACAGCTTCAGTTGCAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044106.6 |
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| CDS-3UTR CAA 90 bp | AGCGCTTGTCCACAAGCACTGAATGTGACAAAGGACCCTCCTAGTGGCACACGGTGGTTGATGGGCAGCTaGCCGCTGGCTACCTTCTCC | + |
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Preference number: 5 (lower is better) Translates to: SACPQALNVTKDPPSGTRWLMGS*PLATFS Trigger: GGAGAAGGTAGCCAGCGGCAAGCTGCCCATCAACCA...CCGTGTGCCACTAGGAGGGTCCTTTGTCACATTCAGTGCTTGTGGACAAGCGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044106.6 |
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| CDS-3UTR CAA 90 bp | TCCACTCATCTCCACAATGCCACAGCAAGGGTGACCAGGGCAGAGCGCTTGTCCCCCACTGTAGTGTCCTaGATGTCTCTTAGTAAGTGC | + |
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Preference number: 5 (lower is better) Translates to: STHLHNATARVTRAERLSPTVVS*MSLSKC Trigger: GCACTTACTAAGAGACATCAAGGACACTACAGTGGG...GGACAAGCGCTCTGCCCTGGTCACCCTTGCTGTGGCATTGTGGAGATGAGTGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044106.6 |
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| CDS-3UTR CAA 90 bp | CTAGGTTGTTCTCCTCATGAAGTCGGACACCTGAGCCACCACACCCCCAACTCAATGACCAATACTGAGTaGGGGCAGTATCTCTTCATG | + |
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Preference number: 5 (lower is better) Translates to: LGCSPHEVGHLSHHTPNSMTNTE*GQYLFM Trigger: CATGAAGAGATACTGCCCCAACTCAGTATTGGTCAT...TGAGTTGGGGGTGTGGTGGCTCAGGTGTCCGACTTCATGAGGAGAACAACCTAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044106.6 |
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| CDS-3UTR CAA 90 bp | CTTGGACCCCAAGCCCTAAGAATGCTAGTTACAGGTCCAAAAGGTGGTGTGGTCATCCTTTCTCTGGCATaGACCTTCTTGAACATCCCA | + |
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Preference number: 5 (lower is better) Translates to: LGPQALRMLVTGPKGGVVILSLA*TFLNIP Trigger: TGGGATGTTCAAGAAGGTCAATGCCAGAGAAAGGAT...GACCACACCACCTTTTGGACCTGTAACTAGCATTCTTAGGGCTTGGGGTCCAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044106.6 |
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