Pregenerated sensors for PSMD4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000005625Ensembl transcript IDs: ENSMUST00000071664.12, ENSMUST00000107237.8, ENSMUST00000117355.2, ENSMUST00000140348.8
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AGACCTCTGCTAACGGAGCTCAGAGAGGAAACCAGATGCCACCACAGCAGCTTTTCCCCCAGGCCCTCTTaGGAGGAGCCCCACAGAACT | + |
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Preference number: 2 (lower is better) Translates to: RPLLTELREETRCHHSSFSPRPS*EEPHRT Trigger: AGTTCTGTGGGGCTCCTCCCAAGAGGGCCTGGGGGA...AAAGCTGCTGTGGTGGCATCTGGTTTCCTCTCTGAGCTCCGTTAGCAGAGGTCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000117355.2 |
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| 3UTR-3UTR CAA 90 bp | CAAGCCAACAAGACCCATGATGTCCATGAATGGTGTGCATTCCCCAAAGCACAGTTCCCCCAGGCCCTCTaGGGAGGAGCCCCACAGAAC | + |
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Preference number: 3 (lower is better) Translates to: QANKTHDVHEWCAFPKAQFPQAL*GGAPQN Trigger: GTTCTGTGGGGCTCCTCCCAAGAGGGCCTGGGGGAA...CTGTGCTTTGGGGAATGCACACCATTCATGGACATCATGGGTCTTGTTGGCTTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000117355.2 |
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| CDS-3UTR GCA 90 bp | GCACATCTAAGCCTCTATCCAACCCCGTCTTTACAGTCCCCGGGCAGACACAGCCGCAGCGGCCCGCCGTaGCTCTTCCTCCTGCCGCTG | + |
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Preference number: 4 (lower is better) Translates to: AHLSLYPTPSLQSPGRHSRSGPP*LFLLPL Trigger: CAGCGGCAGGAGGAAGAGGCACGGCGGGCCGCTGCG...GCTGTGTCTGCCCGGGGACTGTAAAGACGGGGTTGGATAGAGGCTTAGATGTGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000071664.12 ENSMUST00000107237.8 ENSMUST00000117355.2 ENSMUST00000140348.8 |
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| CDS-3UTR GCA 90 bp | CATCATAAAGGCAGCAGAGCACATCTAAGCCTCTATCCAACCCCGTCTTTACAGCGCAGCGGCCCGCCGTaGCTCTTCCTCCTGCCGCTG | + |
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Preference number: 4 (lower is better) Translates to: HHKGSRAHLSLYPTPSLQRSGPP*LFLLPL Trigger: CAGCGGCAGGAGGAAGAGGCACGGCGGGCCGCTGCG...CTGTAAAGACGGGGTTGGATAGAGGCTTAGATGTGCTCTGCTGCCTTTATGATG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071664.12 ENSMUST00000107237.8 ENSMUST00000117355.2 ENSMUST00000140348.8 |
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| CDS-3UTR GCA 90 bp | TTATTCCATCATAAAGGCAGCAGAGCACATCTAAGCCTCTATCCAACCCCGTCTCGCAGCGGCCCGCCGTaGCTCTTCCTCCTGCCGCTG | + |
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Preference number: 4 (lower is better) Translates to: LFHHKGSRAHLSLYPTPSRSGPP*LFLLPL Trigger: CAGCGGCAGGAGGAAGAGGCACGGCGGGCCGCTGCG...AGACGGGGTTGGATAGAGGCTTAGATGTGCTCTGCTGCCTTTATGATGGAATAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071664.12 ENSMUST00000107237.8 ENSMUST00000117355.2 ENSMUST00000140348.8 |
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| CDS-3UTR TCA 90 bp | GCACATCTAAGCCTCTATCCAACCCCGTCTTTACAGTCCCCGGGCAGACACAGCTGCTGGCCCTCACCTTaGCTGGATCAGATGTGTCCA | + |
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Preference number: 4 (lower is better) Translates to: AHLSLYPTPSLQSPGRHSCWPSP*LDQMCP Trigger: TGGACACATCTGATCCAGTCAAGGTGAGGGCCAGCA...GCTGTGTCTGCCCGGGGACTGTAAAGACGGGGTTGGATAGAGGCTTAGATGTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117355.2 |
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| CDS-3UTR TCA 90 bp | GCACATCTAAGCCTCTATCCAACCCCGTCTTTACAGTCCCCGGGCAGACACAGCTGCCAGTGCAGAAGGTaGTCTTGCCTTTGGGTTGGA | + |
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Preference number: 4 (lower is better) Translates to: AHLSLYPTPSLQSPGRHSCQCRR*SCLWVG Trigger: TCCAACCCAAAGGCAAGATCACCTTCTGCACTGGCA...GCTGTGTCTGCCCGGGGACTGTAAAGACGGGGTTGGATAGAGGCTTAGATGTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000071664.12 ENSMUST00000107237.8 ENSMUST00000117355.2 |
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| CDS-3UTR TCA 90 bp | ACAGCAACATGTTGCTGCCCACTCCTGTGTGCAGCTAAGGGAATGAGAGGGGCAATGATGCGCATCTTGTaGTTCTTGCCCTGCCGGTGC | + |
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Preference number: 4 (lower is better) Translates to: TATCCCPLLCAAKGMRGAMMRIL*FLPCRC Trigger: GCACCGGCAGGGCAAGAATCACAAGATGCGCATCAT...TGCCCCTCTCATTCCCTTAGCTGCACACAGGAGTGGGCAGCAACATGTTGCTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117355.2 |
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| CDS-3UTR TCA 90 bp | CAGAGCACATCTAAGCCTCTATCCAACCCCGTCTTTACAGTCCCCGGGCAGACAAGTCATTGGCCAGTGTaGTCAGGCCCACGTTATTCT | + |
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Preference number: 4 (lower is better) Translates to: QSTSKPLSNPVFTVPGQTSHWPV*SGPRYS Trigger: AGAATAACGTGGGCCTGATCACACTGGCCAATGACT...TGTCTGCCCGGGGACTGTAAAGACGGGGTTGGATAGAGGCTTAGATGTGCTCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000071664.12 ENSMUST00000107237.8 ENSMUST00000117355.2 |
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| CDS-3UTR TCA 90 bp | ACAGCAACATGTTGCTGCCCACTCCTGTGTGCAGCTAAGGGAATGAGAGGGGCAAGTCATTGGCCAGTGTaGTCAGGCCCACGTTATTCT | + |
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Preference number: 4 (lower is better) Translates to: TATCCCPLLCAAKGMRGASHWPV*SGPRYS Trigger: AGAATAACGTGGGCCTGATCACACTGGCCAATGACT...TGCCCCTCTCATTCCCTTAGCTGCACACAGGAGTGGGCAGCAACATGTTGCTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117355.2 |
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| CDS-3UTR CCA 90 bp | AGAGCACATCTAAGCCTCTATCCAACCCCGTCTTTACAGTCCCCGGGCAGACACATCCTCCTCCTTGACTaGATCAGATGTGTCCATGGC | + |
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Preference number: 4 (lower is better) Translates to: RAHLSLYPTPSLQSPGRHILLLD*IRCVHG Trigger: GCCATGGACACATCTGATCCAGTCAAGGAGGAGGAT...GTGTCTGCCCGGGGACTGTAAAGACGGGGTTGGATAGAGGCTTAGATGTGCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000071664.12 ENSMUST00000107237.8 ENSMUST00000140348.8 |
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| CDS-3UTR CCA 90 bp | CATAAAGGCAGCAGAGCACATCTAAGCCTCTATCCAACCCCGTCTTTACAGTCCGCAGGGACATCTGCATaGCGTAGGCGATCTGCTCTT | + |
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Preference number: 4 (lower is better) Translates to: HKGSRAHLSLYPTPSLQSAGTSA*RRRSAL Trigger: AAGAGCAGATCGCCTACGCCATGCAGATGTCCCTGC...GGACTGTAAAGACGGGGTTGGATAGAGGCTTAGATGTGCTCTGCTGCCTTTATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071664.12 ENSMUST00000107237.8 ENSMUST00000117355.2 ENSMUST00000140348.8 |
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| CDS-3UTR TCA 90 bp | CATCATAAAGGCAGCAGAGCACATCTAAGCCTCTATCCAACCCCGTCTTTACAGATGATGCGCATCTTGTaGTTCTTGCCCTGCCGGTGC | + |
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Preference number: 4 (lower is better) Translates to: HHKGSRAHLSLYPTPSLQMMRIL*FLPCRC Trigger: GCACCGGCAGGGCAAGAATCACAAGATGCGCATCAT...CTGTAAAGACGGGGTTGGATAGAGGCTTAGATGTGCTCTGCTGCCTTTATGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000071664.12 ENSMUST00000107237.8 ENSMUST00000117355.2 |
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| CDS-3UTR CCA 90 bp | CATCATAAAGGCAGCAGAGCACATCTAAGCCTCTATCCAACCCCGTCTTTACAGGCAGGGACATCTGCATaGCGTAGGCGATCTGCTCTT | + |
|
Preference number: 4 (lower is better) Translates to: HHKGSRAHLSLYPTPSLQAGTSA*RRRSAL Trigger: AAGAGCAGATCGCCTACGCCATGCAGATGTCCCTGC...CTGTAAAGACGGGGTTGGATAGAGGCTTAGATGTGCTCTGCTGCCTTTATGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071664.12 ENSMUST00000107237.8 ENSMUST00000117355.2 ENSMUST00000140348.8 |
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| CDS-3UTR TCA 90 bp | TTCCATCATAAAGGCAGCAGAGCACATCTAAGCCTCTATCCAACCCCGTCTTTAACTCCGGGTCCTGCATaGCGTCATAGTCATCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: FHHKGSRAHLSLYPTPSLTPGPA*RHSHPP Trigger: AGGAGGATGACTATGACGTCATGCAGGACCCGGAGT...TAAAGACGGGGTTGGATAGAGGCTTAGATGTGCTCTGCTGCCTTTATGATGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000071664.12 ENSMUST00000107237.8 ENSMUST00000140348.8 |
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| CDS-3UTR GCA 90 bp | AAAGGCAGCAGAGCACATCTAAGCCTCTATCCAACCCCGTCTTTACAGTCCCCGACCCAGTTCCATCCTTaGCATTCAGTGTGTTCACAA | + |
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Preference number: 4 (lower is better) Translates to: KGSRAHLSLYPTPSLQSPTQFHP*HSVCSQ Trigger: TTGTGAACACACTGAATGGCAAGGATGGAACTGGGT...CGGGGACTGTAAAGACGGGGTTGGATAGAGGCTTAGATGTGCTCTGCTGCCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000071664.12 ENSMUST00000107237.8 ENSMUST00000117355.2 |
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| CDS-3UTR TCA 90 bp | CAAGCTTTATTCCATCATAAAGGCAGCAGAGCACATCTAAGCCTCTATCCAACCATGATGCGCATCTTGTaGTTCTTGCCCTGCCGGTGC | + |
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Preference number: 4 (lower is better) Translates to: QALFHHKGSRAHLSLYPTMMRIL*FLPCRC Trigger: GCACCGGCAGGGCAAGAATCACAAGATGCGCATCAT...GGTTGGATAGAGGCTTAGATGTGCTCTGCTGCCTTTATGATGGAATAAAGCTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000071664.12 ENSMUST00000107237.8 ENSMUST00000117355.2 |
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| CDS-3UTR TCA 90 bp | CAAGCTTTATTCCATCATAAAGGCAGCAGAGCACATCTAAGCCTCTATCCAACCACTCCGGGTCCTGCATaGCGTCATAGTCATCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: QALFHHKGSRAHLSLYPTTPGPA*RHSHPP Trigger: AGGAGGATGACTATGACGTCATGCAGGACCCGGAGT...GGTTGGATAGAGGCTTAGATGTGCTCTGCTGCCTTTATGATGGAATAAAGCTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000071664.12 ENSMUST00000107237.8 ENSMUST00000140348.8 |
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| CDS-3UTR TCA 90 bp | GGGAAAACTTGCCAAGCTTTATTCCATCATAAAGGCAGCAGAGCACATCTAAGCACTCCGGGTCCTGCATaGCGTCATAGTCATCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: GKTCQALFHHKGSRAHLSTPGPA*RHSHPP Trigger: AGGAGGATGACTATGACGTCATGCAGGACCCGGAGT...GCTTAGATGTGCTCTGCTGCCTTTATGATGGAATAAAGCTTGGCAAGTTTTCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071664.12 ENSMUST00000107237.8 |
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| CDS-3UTR CCA 90 bp | GGGAAAACTTGCCAAGCTTTATTCCATCATAAAGGCAGCAGAGCACATCTAAGCGCAGGGACATCTGCATaGCGTAGGCGATCTGCTCTT | + |
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Preference number: 4 (lower is better) Translates to: GKTCQALFHHKGSRAHLSAGTSA*RRRSAL Trigger: AAGAGCAGATCGCCTACGCCATGCAGATGTCCCTGC...GCTTAGATGTGCTCTGCTGCCTTTATGATGGAATAAAGCTTGGCAAGTTTTCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071664.12 ENSMUST00000107237.8 |
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| CDS-3UTR TCA 90 bp | TGCCAAGCTTTATTCCATCATAAAGGCAGCAGAGCACATCTAAGCCTCTATCCATGCCAGTGCAGAAGGTaGTCTTGCCTTTGGGTTGGA | + |
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Preference number: 4 (lower is better) Translates to: CQALFHHKGSRAHLSLYPCQCRR*SCLWVG Trigger: TCCAACCCAAAGGCAAGATCACCTTCTGCACTGGCA...TGGATAGAGGCTTAGATGTGCTCTGCTGCCTTTATGATGGAATAAAGCTTGGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000071664.12 ENSMUST00000107237.8 ENSMUST00000117355.2 |
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| CDS-3UTR GCA 90 bp | CAAGCCAACAAGACCCATGATGTCCATGAATGGTGTGCATTCCCCAAAGCACAGACCTTTCTTATGAAATaGCAGAGAGGAAAGGCCCTG | + |
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Preference number: 4 (lower is better) Translates to: QANKTHDVHEWCAFPKAQTFLMK*QRGKAL Trigger: CAGGGCCTTTCCTCTCTGGCATTTCATAAGAAAGGT...CTGTGCTTTGGGGAATGCACACCATTCATGGACATCATGGGTCTTGTTGGCTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117355.2 |
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| CDS-3UTR CCA 90 bp | CCAACAAGACCCATGATGTCCATGAATGGTGTGCATTCCCCAAAGCACAGAAGCAGAGAGGAAAGGCCCTaGTCCCAAAAGGATAAAGAT | + |
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Preference number: 4 (lower is better) Translates to: PTRPMMSMNGVHSPKHRSREERP*SQKDKD Trigger: ATCTTTATCCTTTTGGGACCAGGGCCTTTCCTCTCT...GCTTCTGTGCTTTGGGGAATGCACACCATTCATGGACATCATGGGTCTTGTTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117355.2 |
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| CDS-3UTR TCA 90 bp | CAAGCCAACAAGACCCATGATGTCCATGAATGGTGTGCATTCCCCAAAGCACAGAAAAGGATAAAGATCTaGATGCAGGGGATGTCAGAC | + |
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Preference number: 4 (lower is better) Translates to: QANKTHDVHEWCAFPKAQKRIKI*MQGMSD Trigger: GTCTGACATCCCCTGCATTCAGATCTTTATCCTTTT...CTGTGCTTTGGGGAATGCACACCATTCATGGACATCATGGGTCTTGTTGGCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000117355.2 |
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| CDS-3UTR TCA 90 bp | ACTTGCCAAGCTTTATTCCATCATAAAGGCAGCAGAGCACATCTAAGCCTCTATAGTCATTGGCCAGTGTaGTCAGGCCCACGTTATTCT | + |
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Preference number: 4 (lower is better) Translates to: TCQALFHHKGSRAHLSLYSHWPV*SGPRYS Trigger: AGAATAACGTGGGCCTGATCACACTGGCCAATGACT...ATAGAGGCTTAGATGTGCTCTGCTGCCTTTATGATGGAATAAAGCTTGGCAAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000071664.12 ENSMUST00000107237.8 ENSMUST00000117355.2 |
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| CDS-3UTR CCA 90 bp | AAGGGGAAAACTTGCCAAGCTTTATTCCATCATAAAGGCAGCAGAGCACATCTAATCCTCCTCCTTGACTaGATCAGATGTGTCCATGGC | + |
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Preference number: 4 (lower is better) Translates to: KGKTCQALFHHKGSRAHLILLLD*IRCVHG Trigger: GCCATGGACACATCTGATCCAGTCAAGGAGGAGGAT...TAGATGTGCTCTGCTGCCTTTATGATGGAATAAAGCTTGGCAAGTTTTCCCCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000071664.12 ENSMUST00000107237.8 |
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| CDS-3UTR TCA 90 bp | CAAGCTTTATTCCATCATAAAGGCAGCAGAGCACATCTAAGCCTCTATCCAACCCCAAGACCTTTCTTATaGAATGCCAGAGAGGAAAGG | + |
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Preference number: 4 (lower is better) Translates to: QALFHHKGSRAHLSLYPTPRPFL*NAREER Trigger: CCTTTCCTCTCTGGCATTTCATAAGAAAGGTCTTGG...GGTTGGATAGAGGCTTAGATGTGCTCTGCTGCCTTTATGATGGAATAAAGCTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117355.2 |
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| CDS-3UTR GCA 90 bp | CAAGCTTTATTCCATCATAAAGGCAGCAGAGCACATCTAAGCCTCTATCCAACCACCCAGTTCCATCCTTaGCATTCAGTGTGTTCACAA | + |
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Preference number: 4 (lower is better) Translates to: QALFHHKGSRAHLSLYPTTQFHP*HSVCSQ Trigger: TTGTGAACACACTGAATGGCAAGGATGGAACTGGGT...GGTTGGATAGAGGCTTAGATGTGCTCTGCTGCCTTTATGATGGAATAAAGCTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000071664.12 ENSMUST00000107237.8 ENSMUST00000117355.2 |
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| CDS GCA 90 bp | GCCTCAGCTGCAGAGGCCGCAGCGGCCCGCCGTGCCTCTTCCTCCTaGCGCTGCCGCTGCTCTTCCATAGAGACTCGAAGGGCCAGGGCC | + |
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Preference number: 5 (lower is better) Translates to: ASAAEAAAARRASSS*RCRCSSIETRRARA Trigger: GGCCCTGGCCCTTCGAGTCTCTATGGAAGAGCAGCGGCAGCGGCAGGAGGAAGAGGCACGGCGGGCCGCTGCGGCCTCTGCAGCTGAGGC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000071664.12 ENSMUST00000107237.8 ENSMUST00000117355.2 |
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| CDS GCA 90 bp | GCCTCAGCTGCAGAGGCCGCAGCGGCCCGCCGTGCCTCTTCCTCCTaGCGCTGCCGCTGCTCTTCCATAGAGACTCGAAGGGCCTCTTCC | + |
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Preference number: 5 (lower is better) Translates to: ASAAEAAAARRASSS*RCRCSSIETRRASS Trigger: GGAAGAGGCCCTTCGAGTCTCTATGGAAGAGCAGCGGCAGCGGCAGGAGGAAGAGGCACGGCGGGCCGCTGCGGCCTCTGCAGCTGAGGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140348.8 |
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| CDS-3UTR CAA 90 bp | GCACATCTAAGCCTCTATCCAACCCCGTCTTTACAGTCCCCGGGCAGACACAGCACCAGATCCTTCTCGTaGTCCTCCACAGGGCTACCG | + |
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Preference number: 5 (lower is better) Translates to: AHLSLYPTPSLQSPGRHSTRSFS*SSTGLP Trigger: CGGTAGCCCTGTGGAGGACAACGAGAAGGATCTGGT...GCTGTGTCTGCCCGGGGACTGTAAAGACGGGGTTGGATAGAGGCTTAGATGTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000071664.12 ENSMUST00000107237.8 ENSMUST00000117355.2 |
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| CDS-3UTR CAA 90 bp | CAGAGCACATCTAAGCCTCTATCCAACCCCGTCTTTACAGTCCCCGGGCAGACAACCAGATCCTTCTCGTaGTCCTCCACAGGGCTACCG | + |
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Preference number: 5 (lower is better) Translates to: QSTSKPLSNPVFTVPGQTTRSFS*SSTGLP Trigger: CGGTAGCCCTGTGGAGGACAACGAGAAGGATCTGGT...TGTCTGCCCGGGGACTGTAAAGACGGGGTTGGATAGAGGCTTAGATGTGCTCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000071664.12 ENSMUST00000107237.8 ENSMUST00000117355.2 |
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| CDS-3UTR CAA 90 bp | AGACCTCTGCTAACGGAGCTCAGAGAGGAAACCAGATGCCACCACAGCAGCTTTCTGCTGGCCCTCACCTaGACTGGATCAGATGTGTCC | + |
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Preference number: 5 (lower is better) Translates to: RPLLTELREETRCHHSSFLLALT*TGSDVS Trigger: GGACACATCTGATCCAGTCAAGGTGAGGGCCAGCAG...AAAGCTGCTGTGGTGGCATCTGGTTTCCTCTCTGAGCTCCGTTAGCAGAGGTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117355.2 |
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| CDS-3UTR CAA 90 bp | AGCAGAGCACATCTAAGCCTCTATCCAACCCCGTCTTTACAGTCCCCGGGCAGAGATCTTGCCTTTGGGTaGGACAGTGTGGAGCTTGGA | + |
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Preference number: 5 (lower is better) Translates to: SRAHLSLYPTPSLQSPGRDLAFG*DSVELG Trigger: TCCAAGCTCCACACTGTCCAACCCAAAGGCAAGATC...TCTGCCCGGGGACTGTAAAGACGGGGTTGGATAGAGGCTTAGATGTGCTCTGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000071664.12 ENSMUST00000107237.8 ENSMUST00000117355.2 |
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| CDS-3UTR CAA 90 bp | CATCATAAAGGCAGCAGAGCACATCTAAGCCTCTATCCAACCCCGTCTTTACAGAGCACCTCACAGTCATaGGCCAGTGTGATCAGGCCC | + |
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Preference number: 5 (lower is better) Translates to: HHKGSRAHLSLYPTPSLQSTSQS*ASVIRP Trigger: GGGCCTGATCACACTGGCCAATGACTGTGAGGTGCT...CTGTAAAGACGGGGTTGGATAGAGGCTTAGATGTGCTCTGCTGCCTTTATGATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000071664.12 ENSMUST00000107237.8 ENSMUST00000117355.2 |
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| CDS-3UTR CAA 90 bp | TTATTCCATCATAAAGGCAGCAGAGCACATCTAAGCCTCTATCCAACCCCGTCTAGCACCTCACAGTCATaGGCCAGTGTGATCAGGCCC | + |
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Preference number: 5 (lower is better) Translates to: LFHHKGSRAHLSLYPTPSSTSQS*ASVIRP Trigger: GGGCCTGATCACACTGGCCAATGACTGTGAGGTGCT...AGACGGGGTTGGATAGAGGCTTAGATGTGCTCTGCTGCCTTTATGATGGAATAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000071664.12 ENSMUST00000107237.8 ENSMUST00000117355.2 |
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| CDS-3UTR CAA 90 bp | TGCCAAGCTTTATTCCATCATAAAGGCAGCAGAGCACATCTAAGCCTCTATCCAAGCACCTCACAGTCATaGGCCAGTGTGATCAGGCCC | + |
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Preference number: 5 (lower is better) Translates to: CQALFHHKGSRAHLSLYPSTSQS*ASVIRP Trigger: GGGCCTGATCACACTGGCCAATGACTGTGAGGTGCT...TGGATAGAGGCTTAGATGTGCTCTGCTGCCTTTATGATGGAATAAAGCTTGGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000071664.12 ENSMUST00000107237.8 ENSMUST00000117355.2 |
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| CDS-3UTR CAA 90 bp | CATCATAAAGGCAGCAGAGCACATCTAAGCCTCTATCCAACCCCGTCTTTACAGGATCTTGCCTTTGGGTaGGACAGTGTGGAGCTTGGA | + |
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Preference number: 5 (lower is better) Translates to: HHKGSRAHLSLYPTPSLQDLAFG*DSVELG Trigger: TCCAAGCTCCACACTGTCCAACCCAAAGGCAAGATC...CTGTAAAGACGGGGTTGGATAGAGGCTTAGATGTGCTCTGCTGCCTTTATGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000071664.12 ENSMUST00000107237.8 ENSMUST00000117355.2 |
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| CDS-3UTR CAA 90 bp | TGCCAAGCTTTATTCCATCATAAAGGCAGCAGAGCACATCTAAGCCTCTATCCAACCAGATCCTTCTCGTaGTCCTCCACAGGGCTACCG | + |
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Preference number: 5 (lower is better) Translates to: CQALFHHKGSRAHLSLYPTRSFS*SSTGLP Trigger: CGGTAGCCCTGTGGAGGACAACGAGAAGGATCTGGT...TGGATAGAGGCTTAGATGTGCTCTGCTGCCTTTATGATGGAATAAAGCTTGGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000071664.12 ENSMUST00000107237.8 ENSMUST00000117355.2 |
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| CDS-3UTR CAA 90 bp | CAAGCCAACAAGACCCATGATGTCCATGAATGGTGTGCATTCCCCAAAGCACAGAAGTGTTTCCTTCTGTaGCTCCAAGACCTTTCTTAT | + |
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Preference number: 5 (lower is better) Translates to: QANKTHDVHEWCAFPKAQKCFLL*LQDLSY Trigger: ATAAGAAAGGTCTTGGAGCAACAGAAGGAAACACTT...CTGTGCTTTGGGGAATGCACACCATTCATGGACATCATGGGTCTTGTTGGCTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117355.2 |
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| CDS CCA 72 bp | GATAAAGATCTGAATGCAGGGGATGTCAGACTTGGCTaGGTCAGAGCCTCACTGCTGGCCCTCACCTTGACT | + |
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Preference number: 6 (lower is better) Translates to: DKDLNAGDVRLG*VRASLLALTLT Trigger: AGTCAAGGTGAGGGCCAGCAGTGAGGCTCTGACCCAGCCAAGTCTGACATCCCCTGCATTCAGATCTTTATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117355.2 |
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| CDS TCA 72 bp | GAGAGGAAAGGCCCTGGTCCCAAAAGGATAAAGATCTaGATGCAGGGGATGTCAGACTTGGCTGGGTCAGAG | + |
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Preference number: 6 (lower is better) Translates to: ERKGPGPKRIKI*MQGMSDLAGSE Trigger: CTCTGACCCAGCCAAGTCTGACATCCCCTGCATTCAGATCTTTATCCTTTTGGGACCAGGGCCTTTCCTCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117355.2 |
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