Pregenerated sensors for PSMD2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000006998Ensembl transcript IDs: ENSMUST00000007212.9, ENSMUST00000172207.8, ENSMUST00000231897.2, ENSMUST00000232513.2, ENSMUST00000232629.2
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GCTGCAGCCAGGGTCTCTAGAAGCCACTTTTTCAAAGATCATAGTTGGGGTTCTCTTTCCCCAAGTGATTaGGGCCCAGGCCAAGAGGAA | + |
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Preference number: 2 (lower is better) Translates to: AAARVSRSHFFKDHSWGSLSPSD*GPGQEE Trigger: TTCCTCTTGGCCTGGGCCTCAATCACTTGGGGAAAG...AGAACCCCAACTATGATCTTTGAAAAAGTGGCTTCTAGAGACCCTGGCTGCAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000172207.8 |
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| 3UTR-3UTR TCA 90 bp | GCTGCAGCCAGGGTCTCTAGAAGCCACTTTTTCAAAGATCATAGTTGGGGTTCTACCACATCCACTGCCTaGCCCACACGGACAGAAACT | + |
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Preference number: 2 (lower is better) Translates to: AAARVSRSHFFKDHSWGSTTSTA*PTRTET Trigger: AGTTTCTGTCCGTGTGGGTCAGGCAGTGGATGTGGT...AGAACCCCAACTATGATCTTTGAAAAAGTGGCTTCTAGAGACCCTGGCTGCAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172207.8 |
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| 3UTR-3UTR CCA 90 bp | GCTGCAGCCAGGGTCTCTAGAAGCCACTTTTTCAAAGATCATAGTTGGGGTTCTCACACGGACAGAAACTaGCAATGGTCGCAGCTCCTC | + |
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Preference number: 2 (lower is better) Translates to: AAARVSRSHFFKDHSWGSHTDRN*QWSQLL Trigger: GAGGAGCTGCGACCATTGCCAGTTTCTGTCCGTGTG...AGAACCCCAACTATGATCTTTGAAAAAGTGGCTTCTAGAGACCCTGGCTGCAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172207.8 |
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| 3UTR-3UTR GCA 90 bp | GCTGCAGCCAGGGTCTCTAGAAGCCACTTTTTCAAAGATCATAGTTGGGGTTCTATGTGTCAAGCCCTGTaGCAAGCGCACCATGAAGAG | + |
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Preference number: 2 (lower is better) Translates to: AAARVSRSHFFKDHSWGSMCQAL*QAHHEE Trigger: CTCTTCATGGTGCGCTTGGCACAGGGCTTGACACAT...AGAACCCCAACTATGATCTTTGAAAAAGTGGCTTCTAGAGACCCTGGCTGCAGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172207.8 |
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| 3UTR-3UTR CCA 90 bp | GCTGCAGCCAGGGTCTCTAGAAGCCACTTTTTCAAAGATCATAGTTGGGGTTCTTTGTCCTCCTCAGACTaGAGGGTTAGGGGAAGAAGC | + |
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Preference number: 2 (lower is better) Translates to: AAARVSRSHFFKDHSWGSLSSSD*RVRGRS Trigger: GCTTCTTCCCCTAACCCTCCAGTCTGAGGAGGACAA...AGAACCCCAACTATGATCTTTGAAAAAGTGGCTTCTAGAGACCCTGGCTGCAGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000172207.8 |
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| 3UTR-3UTR TCA 90 bp | GCTGCAGCCAGGGTCTCTAGAAGCCACTTTTTCAAAGATCATAGTTGGGGTTCTGTGGACGCAGAAATTTaGGAGGCTTGGGTACTGAAG | + |
|
Preference number: 2 (lower is better) Translates to: AAARVSRSHFFKDHSWGSVDAEI*EAWVLK Trigger: CTTCAGTACCCAAGCCTCTCAAATTTCTGCGTCCAC...AGAACCCCAACTATGATCTTTGAAAAAGTGGCTTCTAGAGACCCTGGCTGCAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172207.8 |
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| CDS-3UTR CCA 90 bp | CAAAGATCTGGAACAGTATCCACCCCTCATAGCAGGCAGGACAGCCTGCTAAAATCTGCCCGCTCCCCATaGGCCAGCAACACTGGCGTT | + |
|
Preference number: 4 (lower is better) Translates to: QRSGTVSTPHSRQDSLLKSARSP*ASNTGV Trigger: AACGCCAGTGTTGCTGGCCCATGGGGAGCGGGCAGA...TTTTAGCAGGCTGTCCTGCCTGCTATGAGGGGTGGATACTGTTCCAGATCTTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000007212.9 ENSMUST00000231897.2 |
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| CDS-3UTR TCA 90 bp | CAAAGATCTGGAACAGTATCCACCCCTCATAGCAGGCAGGACAGCCTGCTAAAAACTGCGGAATGGCTCTaGCACCACCTCCAAGGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: QRSGTVSTPHSRQDSLLKTAEWL*HHLQGS Trigger: GCTGCCTTGGAGGTGGTGTCAGAGCCATTCCGCAGT...TTTTAGCAGGCTGTCCTGCCTGCTATGAGGGGTGGATACTGTTCCAGATCTTTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000007212.9 ENSMUST00000231897.2 |
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| CDS-3UTR TCA 90 bp | TCCGCTGCAGCCAGGGTCTCTAGAAGCCACTTTTTCAAAGATCATAGTTGGGGTACTGCGGAATGGCTCTaGCACCACCTCCAAGGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: SAAARVSRSHFFKDHSWGTAEWL*HHLQGS Trigger: GCTGCCTTGGAGGTGGTGTCAGAGCCATTCCGCAGT...ACCCCAACTATGATCTTTGAAAAAGTGGCTTCTAGAGACCCTGGCTGCAGCGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000231897.2 |
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| CDS-3UTR GCA 90 bp | AGATCTGGAACAGTATCCACCCCTCATAGCAGGCAGGACAGCCTGCTAAAAACAGCCCACCACATCCACTaGCTGACCCACACGGACAGA | + |
|
Preference number: 4 (lower is better) Translates to: RSGTVSTPHSRQDSLLKTAHHIH*LTHTDR Trigger: TCTGTCCGTGTGGGTCAGGCAGTGGATGTGGTGGGC...TGTTTTTAGCAGGCTGTCCTGCCTGCTATGAGGGGTGGATACTGTTCCAGATCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000007212.9 |
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| CDS-3UTR CCA 90 bp | AGATCTGGAACAGTATCCACCCCTCATAGCAGGCAGGACAGCCTGCTAAAAACAGACGCCAGTTCTTCCTaGGAGCCCACGAGCCGATAC | + |
|
Preference number: 4 (lower is better) Translates to: RSGTVSTPHSRQDSLLKTDASSS*EPTSRY Trigger: GTATCGGCTCGTGGGCTCCCAGGAAGAACTGGCGTC...TGTTTTTAGCAGGCTGTCCTGCCTGCTATGAGGGGTGGATACTGTTCCAGATCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000007212.9 |
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| CDS-3UTR GCA 90 bp | CAAAGATCTGGAACAGTATCCACCCCTCATAGCAGGCAGGACAGCCTGCTAAAACATCCCTTCGCTCCTTaGCACTCGACTTCTCGTCCG | + |
|
Preference number: 4 (lower is better) Translates to: QRSGTVSTPHSRQDSLLKHPFAP*HSTSRP Trigger: CGGACGAGAAGTCGAGTGGCAAGGAGCGAAGGGATG...TTTTAGCAGGCTGTCCTGCCTGCTATGAGGGGTGGATACTGTTCCAGATCTTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000007212.9 ENSMUST00000172207.8 |
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| CDS-3UTR TCA 90 bp | CAAAGATCTGGAACAGTATCCACCCCTCATAGCAGGCAGGACAGCCTGCTAAAACATGCCGACCCAGCATaGATGCCATCTGCTTCTGGA | + |
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Preference number: 4 (lower is better) Translates to: QRSGTVSTPHSRQDSLLKHADPA*MPSASG Trigger: TCCAGAAGCAGATGGCATTCATGCTGGGTCGGCATG...TTTTAGCAGGCTGTCCTGCCTGCTATGAGGGGTGGATACTGTTCCAGATCTTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007212.9 |
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| CDS-3UTR TCA 90 bp | AGATCTGGAACAGTATCCACCCCTCATAGCAGGCAGGACAGCCTGCTAAAAACACTTTCCCCAAGTGATTaGGGCCCAGGCCAAGAGGAA | + |
|
Preference number: 4 (lower is better) Translates to: RSGTVSTPHSRQDSLLKTLSPSD*GPGQEE Trigger: TTCCTCTTGGCCTGGGCCTCAATCACTTGGGGAAAG...TGTTTTTAGCAGGCTGTCCTGCCTGCTATGAGGGGTGGATACTGTTCCAGATCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000007212.9 ENSMUST00000231897.2 |
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| CDS-3UTR TCA 90 bp | TCCGCTGCAGCCAGGGTCTCTAGAAGCCACTTTTTCAAAGATCATAGTTGGGGTCTTTCCCCAAGTGATTaGGGCCCAGGCCAAGAGGAA | + |
|
Preference number: 4 (lower is better) Translates to: SAAARVSRSHFFKDHSWGLSPSD*GPGQEE Trigger: TTCCTCTTGGCCTGGGCCTCAATCACTTGGGGAAAG...ACCCCAACTATGATCTTTGAAAAAGTGGCTTCTAGAGACCCTGGCTGCAGCGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000231897.2 |
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| CDS-3UTR TCA 90 bp | CAAAGATCTGGAACAGTATCCACCCCTCATAGCAGGCAGGACAGCCTGCTAAAAACCACATCCACTGCCTaGCCCACACGGACAGAAACT | + |
|
Preference number: 4 (lower is better) Translates to: QRSGTVSTPHSRQDSLLKTTSTA*PTRTET Trigger: AGTTTCTGTCCGTGTGGGTCAGGCAGTGGATGTGGT...TTTTAGCAGGCTGTCCTGCCTGCTATGAGGGGTGGATACTGTTCCAGATCTTTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000007212.9 |
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| CDS-3UTR GCA 90 bp | GGTAACAATTCCCCCAAAGATCTGGAACAGTATCCACCCCTCATAGCAGGCAGGCAGTGGTTCCCGCTGTaGTTTCTCTGCATCATCCAG | + |
|
Preference number: 4 (lower is better) Translates to: GNNSPKDLEQYPPLIAGRQWFPL*FLCIIQ Trigger: CTGGATGATGCAGAGAAAGCACAGCGGGAACCACTG...CCTGCCTGCTATGAGGGGTGGATACTGTTCCAGATCTTTGGGGGAATTGTTACC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000007212.9 |
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| CDS-3UTR GCA 90 bp | CAAAGATCTGGAACAGTATCCACCCCTCATAGCAGGCAGGACAGCCTGCTAAAACCGACCCAGCATGAATaGCATCTGCTTCTGGACCAC | + |
|
Preference number: 4 (lower is better) Translates to: QRSGTVSTPHSRQDSLLKPTQHE*HLLLDH Trigger: GTGGTCCAGAAGCAGATGGCATTCATGCTGGGTCGG...TTTTAGCAGGCTGTCCTGCCTGCTATGAGGGGTGGATACTGTTCCAGATCTTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007212.9 |
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| CDS-3UTR CCA 90 bp | CAAAGATCTGGAACAGTATCCACCCCTCATAGCAGGCAGGACAGCCTGCTAAAACCAGACGGGCATTATTaGTACCACTGCCCACCATGC | + |
|
Preference number: 4 (lower is better) Translates to: QRSGTVSTPHSRQDSLLKPDGHY*YHCPPC Trigger: GCATGGTGGGCAGTGGTACCAATAATGCCCGTCTGG...TTTTAGCAGGCTGTCCTGCCTGCTATGAGGGGTGGATACTGTTCCAGATCTTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007212.9 |
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| CDS-3UTR CCA 90 bp | AGATCTGGAACAGTATCCACCCCTCATAGCAGGCAGGACAGCCTGCTAAAAACACACACGGACAGAAACTaGCAATGGTCGCAGCTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: RSGTVSTPHSRQDSLLKTHTDRN*QWSQLL Trigger: GAGGAGCTGCGACCATTGCCAGTTTCTGTCCGTGTG...TGTTTTTAGCAGGCTGTCCTGCCTGCTATGAGGGGTGGATACTGTTCCAGATCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000007212.9 |
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| CDS-3UTR GCA 90 bp | CTGCAGCCAGGGTCTCTAGAAGCCACTTTTTCAAAGATCATAGTTGGGGTTCTTCATCCCTTCGCTCCTTaGCACTCGACTTCTCGTCCG | + |
|
Preference number: 4 (lower is better) Translates to: LQPGSLEATFSKIIVGVLHPFAP*HSTSRP Trigger: CGGACGAGAAGTCGAGTGGCAAGGAGCGAAGGGATG...AAGAACCCCAACTATGATCTTTGAAAAAGTGGCTTCTAGAGACCCTGGCTGCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172207.8 |
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| CDS-3UTR GCA 90 bp | AGATCTGGAACAGTATCCACCCCTCATAGCAGGCAGGACAGCCTGCTAAAAACACTTGGCCACCTCTCCTaGCAGATGTCTGACGTATTC | + |
|
Preference number: 4 (lower is better) Translates to: RSGTVSTPHSRQDSLLKTLGHLS*QMSDVF Trigger: GAATACGTCAGACATCTGGCAGGAGAGGTGGCCAAG...TGTTTTTAGCAGGCTGTCCTGCCTGCTATGAGGGGTGGATACTGTTCCAGATCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000007212.9 |
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| CDS-3UTR GCA 90 bp | AGATCTGGAACAGTATCCACCCCTCATAGCAGGCAGGACAGCCTGCTAAAAACAATGTGTCAAGCCCTGTaGCAAGCGCACCATGAAGAG | + |
|
Preference number: 4 (lower is better) Translates to: RSGTVSTPHSRQDSLLKTMCQAL*QAHHEE Trigger: CTCTTCATGGTGCGCTTGGCACAGGGCTTGACACAT...TGTTTTTAGCAGGCTGTCCTGCCTGCTATGAGGGGTGGATACTGTTCCAGATCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000007212.9 |
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| CDS-3UTR TCA 90 bp | TCTGGAACAGTATCCACCCCTCATAGCAGGCAGGACAGCCTGCTAAAAACAAAAGGAGAGCTCCTGACTTaGTGTAGTCCTCAGAGGAGT | + |
|
Preference number: 4 (lower is better) Translates to: SGTVSTPHSRQDSLLKTKGELLT*CSPQRS Trigger: ACTCCTCTGAGGACTACATCAAGTCAGGAGCTCTCC...TTTTGTTTTTAGCAGGCTGTCCTGCCTGCTATGAGGGGTGGATACTGTTCCAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000007212.9 |
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| CDS-3UTR TCA 90 bp | TCTGGAACAGTATCCACCCCTCATAGCAGGCAGGACAGCCTGCTAAAAACAAAAGGCAAGGAGAGCTCCTaGCTTGATGTAGTCCTCAGA | + |
|
Preference number: 4 (lower is better) Translates to: SGTVSTPHSRQDSLLKTKGKESS*LDVVLR Trigger: TCTGAGGACTACATCAAGTCAGGAGCTCTCCTTGCC...TTTTGTTTTTAGCAGGCTGTCCTGCCTGCTATGAGGGGTGGATACTGTTCCAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000007212.9 |
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| CDS-3UTR TCA 90 bp | TCTGGAACAGTATCCACCCCTCATAGCAGGCAGGACAGCCTGCTAAAAACAAAAAGAACAGCTACTCCCTaGTGTGCTCCCATGTCAGCA | + |
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Preference number: 4 (lower is better) Translates to: SGTVSTPHSRQDSLLKTKRTATP*CAPMSA Trigger: TGCTGACATGGGAGCACATCAGGGAGTAGCTGTTCT...TTTTGTTTTTAGCAGGCTGTCCTGCCTGCTATGAGGGGTGGATACTGTTCCAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000007212.9 |
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| CDS-3UTR GCA 90 bp | GGTAACAATTCCCCCAAAGATCTGGAACAGTATCCACCCCTCATAGCAGGCAGGCCACTTGAGAGCCACTaGCACCAAACCTGTTATTCT | + |
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Preference number: 4 (lower is better) Translates to: GNNSPKDLEQYPPLIAGRPLESH*HQTCYS Trigger: AGAATAACAGGTTTGGTGGCAGTGGCTCTCAAGTGG...CCTGCCTGCTATGAGGGGTGGATACTGTTCCAGATCTTTGGGGGAATTGTTACC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000007212.9 |
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| 3UTR CAA 72 bp | TGTGCTCCCATGTCAGCAGGGGCTTCCTTCTTGTCCTaGTCCTTCTTTTCCTTCTTGTCTTTGTCTTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: CAPMSAGASFLS*SFFSFLSLSSS Trigger: GGAGGAAGACAAAGACAAGAAGGAAAAGAAGGACAAGGACAAGAAGGAAGCCCCTGCTGACATGGGAGCACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000172207.8 ENSMUST00000232513.2 |
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| CDS-3UTR TCA 90 bp | TCTGGAACAGTATCCACCCCTCATAGCAGGCAGGACAGCCTGCTAAAAACAAAAGTGGACGCAGAAATTTaGGAGGCTTGGGTACTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: SGTVSTPHSRQDSLLKTKVDAEI*EAWVLK Trigger: CTTCAGTACCCAAGCCTCTCAAATTTCTGCGTCCAC...TTTTGTTTTTAGCAGGCTGTCCTGCCTGCTATGAGGGGTGGATACTGTTCCAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000007212.9 |
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| CDS-3UTR TCA 90 bp | AGATCTGGAACAGTATCCACCCCTCATAGCAGGCAGGACAGCCTGCTAAAAACAGCGTATCCAGGATGTTaGGTCGTGGATTTGAAACAG | + |
|
Preference number: 4 (lower is better) Translates to: RSGTVSTPHSRQDSLLKTAYPGC*VVDLKQ Trigger: CTGTTTCAAATCCACGACTCAACATCCTGGATACGC...TGTTTTTAGCAGGCTGTCCTGCCTGCTATGAGGGGTGGATACTGTTCCAGATCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000007212.9 |
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| CDS-3UTR TCA 90 bp | CAAAGATCTGGAACAGTATCCACCCCTCATAGCAGGCAGGACAGCCTGCTAAAAGAGACTTGCCTAGGATaGTGTTTCGAACATCCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: QRSGTVSTPHSRQDSLLKETCLG*CFEHPG Trigger: TCCTGGATGTTCGAAACATCATCCTAGGCAAGTCTC...TTTTAGCAGGCTGTCCTGCCTGCTATGAGGGGTGGATACTGTTCCAGATCTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007212.9 |
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| CDS-3UTR CCA 90 bp | AGATCTGGAACAGTATCCACCCCTCATAGCAGGCAGGACAGCCTGCTAAAAACAAATGCCATCTGCTTCTaGACCACCACATCTTTGCAG | + |
|
Preference number: 4 (lower is better) Translates to: RSGTVSTPHSRQDSLLKTNAICF*TTTSLQ Trigger: CTGCAAAGATGTGGTGGTCCAGAAGCAGATGGCATT...TGTTTTTAGCAGGCTGTCCTGCCTGCTATGAGGGGTGGATACTGTTCCAGATCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000007212.9 |
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| CDS-3UTR TCA 90 bp | TCTGGAACAGTATCCACCCCTCATAGCAGGCAGGACAGCCTGCTAAAAACAAAACCATATCTCAGCAAGTaGCCAAAAGTTCGCAATGCC | + |
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Preference number: 4 (lower is better) Translates to: SGTVSTPHSRQDSLLKTKPYLSK*PKVRNA Trigger: GGCATTGCGAACTTTTGGTCACTTGCTGAGATATGG...TTTTGTTTTTAGCAGGCTGTCCTGCCTGCTATGAGGGGTGGATACTGTTCCAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000007212.9 |
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| CDS-3UTR GCA 90 bp | GGTAACAATTCCCCCAAAGATCTGGAACAGTATCCACCCCTCATAGCAGGCAGGAGAGATGATGTCAGCTaGAAAACACTTATTCTCCCC | + |
|
Preference number: 4 (lower is better) Translates to: GNNSPKDLEQYPPLIAGRRDDVS*KTLILP Trigger: GGGGAGAATAAGTGTTTTGCAGCTGACATCATCTCT...CCTGCCTGCTATGAGGGGTGGATACTGTTCCAGATCTTTGGGGGAATTGTTACC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000007212.9 |
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| CDS-3UTR GCA 90 bp | AGATCTGGAACAGTATCCACCCCTCATAGCAGGCAGGACAGCCTGCTAAAAACAACCAAAAGTTCGCAATaGCATCTCTGCACCAATCTC | + |
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Preference number: 4 (lower is better) Translates to: RSGTVSTPHSRQDSLLKTTKSSQ*HLCTNL Trigger: GAGATTGGTGCAGAGATGGCATTGCGAACTTTTGGT...TGTTTTTAGCAGGCTGTCCTGCCTGCTATGAGGGGTGGATACTGTTCCAGATCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000007212.9 |
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| CDS-3UTR GCA 90 bp | CTGCAGCCAGGGTCTCTAGAAGCCACTTTTTCAAAGATCATAGTTGGGGTTCTTGTGAATGTCAGCTCCTaGTCTTTGTCTTTTTCCCCG | + |
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Preference number: 4 (lower is better) Translates to: LQPGSLEATFSKIIVGVLVNVSS*SLSFSP Trigger: CGGGGAAAAAGACAAAGAGCAGGAGCTGACATTCAC...AAGAACCCCAACTATGATCTTTGAAAAAGTGGCTTCTAGAGACCCTGGCTGCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000172207.8 |
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| CDS-3UTR TCA 90 bp | TCTGGAACAGTATCCACCCCTCATAGCAGGCAGGACAGCCTGCTAAAAACAAAAGTCAGTAGTTTATCTTaGCCAAAGGCTGCATTCACA | + |
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Preference number: 4 (lower is better) Translates to: SGTVSTPHSRQDSLLKTKVSSLS*PKAAFT Trigger: TGTGAATGCAGCCTTTGGTCAAGATAAACTACTGAC...TTTTGTTTTTAGCAGGCTGTCCTGCCTGCTATGAGGGGTGGATACTGTTCCAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000007212.9 |
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| CDS-3UTR GCA 90 bp | CAAAGATCTGGAACAGTATCCACCCCTCATAGCAGGCAGGACAGCCTGCTAAAAATCTTGACCAAAGGCTaGATTCACAAAGCCATTTAC | + |
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Preference number: 4 (lower is better) Translates to: QRSGTVSTPHSRQDSLLKILTKG*IHKAIY Trigger: GTAAATGGCTTTGTGAATGCAGCCTTTGGTCAAGAT...TTTTAGCAGGCTGTCCTGCCTGCTATGAGGGGTGGATACTGTTCCAGATCTTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000007212.9 |
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| CDS-3UTR CAA 90 bp | CAAAGATCTGGAACAGTATCCACCCCTCATAGCAGGCAGGACAGCCTGCTAAAACCGCGCCGCTGGGGGTaGTCGCGGAGGGCTGTTGGG | + |
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Preference number: 5 (lower is better) Translates to: QRSGTVSTPHSRQDSLLKPRRWG*SRRAVG Trigger: CCCAACAGCCCTCCGCGACAACCCCCAGCGGCGCGG...TTTTAGCAGGCTGTCCTGCCTGCTATGAGGGGTGGATACTGTTCCAGATCTTTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000007212.9 ENSMUST00000172207.8 |
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| CDS-3UTR CAA 90 bp | GCTGCAGCCAGGGTCTCTAGAAGCCACTTTTTCAAAGATCATAGTTGGGGTTCTCCGCGCCGCTGGGGGTaGTCGCGGAGGGCTGTTGGG | + |
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Preference number: 5 (lower is better) Translates to: AAARVSRSHFFKDHSWGSPRRWG*SRRAVG Trigger: CCCAACAGCCCTCCGCGACAACCCCCAGCGGCGCGG...AGAACCCCAACTATGATCTTTGAAAAAGTGGCTTCTAGAGACCCTGGCTGCAGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000172207.8 |
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| CDS-3UTR CAA 90 bp | GGTAACAATTCCCCCAAAGATCTGGAACAGTATCCACCCCTCATAGCAGGCAGGGCCAGACGGGCATTATaGGTACCACTGCCCACCATG | + |
|
Preference number: 5 (lower is better) Translates to: GNNSPKDLEQYPPLIAGRARRAL*VPLPTM Trigger: CATGGTGGGCAGTGGTACCAATAATGCCCGTCTGGC...CCTGCCTGCTATGAGGGGTGGATACTGTTCCAGATCTTTGGGGGAATTGTTACC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000007212.9 |
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| CDS-3UTR CAA 90 bp | GGTAACAATTCCCCCAAAGATCTGGAACAGTATCCACCCCTCATAGCAGGCAGGGAGGAGTACAGATACTaGTCAATCTGGGTGAGGCCA | + |
|
Preference number: 5 (lower is better) Translates to: GNNSPKDLEQYPPLIAGREEYRY*SIWVRP Trigger: TGGCCTCACCCAGATTGACAAGTATCTGTACTCCTC...CCTGCCTGCTATGAGGGGTGGATACTGTTCCAGATCTTTGGGGGAATTGTTACC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000007212.9 |
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| CDS-3UTR CAA 90 bp | TCCGCTGCAGCCAGGGTCTCTAGAAGCCACTTTTTCAAAGATCATAGTTGGGGTGAAGTGACATCTCCATaGCAGGACCCCACTGCTATC | + |
|
Preference number: 5 (lower is better) Translates to: SAAARVSRSHFFKDHSWGEVTSP*QDPTAI Trigger: GATAGCAGTGGGGTCCTGCAATGGAGATGTCACTTC...ACCCCAACTATGATCTTTGAAAAAGTGGCTTCTAGAGACCCTGGCTGCAGCGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000231897.2 |
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| CDS-3UTR CAA 90 bp | TCTGGAACAGTATCCACCCCTCATAGCAGGCAGGACAGCCTGCTAAAAACAAAAGAAGTGACATCTCCATaGCAGGACCCCACTGCTATC | + |
|
Preference number: 5 (lower is better) Translates to: SGTVSTPHSRQDSLLKTKEVTSP*QDPTAI Trigger: GATAGCAGTGGGGTCCTGCAATGGAGATGTCACTTC...TTTTGTTTTTAGCAGGCTGTCCTGCCTGCTATGAGGGGTGGATACTGTTCCAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000007212.9 ENSMUST00000231897.2 |
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| CDS-3UTR CAA 90 bp | GGTAACAATTCCCCCAAAGATCTGGAACAGTATCCACCCCTCATAGCAGGCAGGAGCGTATCCAGGATGTaGAGTCGTGGATTTGAAACA | + |
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Preference number: 5 (lower is better) Translates to: GNNSPKDLEQYPPLIAGRSVSRM*SRGFET Trigger: TGTTTCAAATCCACGACTCAACATCCTGGATACGCT...CCTGCCTGCTATGAGGGGTGGATACTGTTCCAGATCTTTGGGGGAATTGTTACC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000007212.9 |
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| CDS-3UTR CAA 90 bp | GGTAACAATTCCCCCAAAGATCTGGAACAGTATCCACCCCTCATAGCAGGCAGGAGAAATTTGAGAGGCTaGGGTACTGAAGTCATGGAA | + |
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Preference number: 5 (lower is better) Translates to: GNNSPKDLEQYPPLIAGRRNLRG*GTEVME Trigger: TTCCATGACTTCAGTACCCAAGCCTCTCAAATTTCT...CCTGCCTGCTATGAGGGGTGGATACTGTTCCAGATCTTTGGGGGAATTGTTACC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000007212.9 |
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| CDS-3UTR CAA 90 bp | TCTGGAACAGTATCCACCCCTCATAGCAGGCAGGACAGCCTGCTAAAAACAAAAACCAGTTCCATGTCATaGAGCATCAGTGCCAATCTC | + |
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Preference number: 5 (lower is better) Translates to: SGTVSTPHSRQDSLLKTKTSSMS*SISANL Trigger: GAGATTGGCACTGATGCTCAATGACATGGAACTGGT...TTTTGTTTTTAGCAGGCTGTCCTGCCTGCTATGAGGGGTGGATACTGTTCCAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000007212.9 |
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| CDS-3UTR CAA 90 bp | TCTGGAACAGTATCCACCCCTCATAGCAGGCAGGACAGCCTGCTAAAAACAAAATGGACCACCACATCTTaGCAGGAAGTGAAAATGTCT | + |
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Preference number: 5 (lower is better) Translates to: SGTVSTPHSRQDSLLKTKWTTTS*QEVKMS Trigger: AGACATTTTCACTTCCTGCAAAGATGTGGTGGTCCA...TTTTGTTTTTAGCAGGCTGTCCTGCCTGCTATGAGGGGTGGATACTGTTCCAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000007212.9 |
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| CDS CAA 72 bp | CTCGTCCGCGCCGCTGGGGGTTGTCGCGGAGGGCTGTaGGGACTGCACGGGTGTCTTGTCTCGTCCACCCTC | + |
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Preference number: 6 (lower is better) Translates to: LVRAAGGCRGGL*GLHGCLVSSTL Trigger: GAGGGTGGACGAGACAAGACACCCGTGCAGTCCCAACAGCCCTCCGCGACAACCCCCAGCGGCGCGGACGAG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000007212.9 ENSMUST00000172207.8 ENSMUST00000232629.2 |
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