Pregenerated sensors for PSMD12 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020720Ensembl transcript IDs: ENSMUST00000021063.13, ENSMUST00000106752.10
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CAGAGTGGGATAGCTAAAGAATCCAGATTCACAGACCAAGTAGCTCCTACTGGGGTTTCCCAGGGGCTATaGGAGCTCCCACTCTTAGCA | + |
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Preference number: 2 (lower is better) Translates to: QSGIAKESRFTDQVAPTGVSQGL*ELPLLA Trigger: TGCTAAGAGTGGGAGCTCCCATAGCCCCTGGGAAAC...CCCAGTAGGAGCTACTTGGTCTGTGAATCTGGATTCTTTAGCTATCCCACTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| 3UTR CAA 90 bp | ATAGCTAAAGAATCCAGATTCACAGACCAAGTAGCTCCTACTGGGTaGTTAGCTTCTCCAGTGTGTGGACTACCACACTCATGCAGTCCC | + |
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Preference number: 2 (lower is better) Translates to: IAKESRFTDQVAPTG*LASPVCGLPHSCSP Trigger: GGGACTGCATGAGTGTGGTAGTCCACACACTGGAGAAGCTAACAACCCAGTAGGAGCTACTTGGTCTGTGAATCTGGATTCTTTAGCTAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| 3UTR-3UTR CCA 90 bp | TCTTCAAGAGGTGCTAATGAGTGTCCTCTGGTTTACACACTTAAGCCCTTAGATCAGCTAGTCAGTGGTTaGGGTGGTTACAGAGTCCCA | + |
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Preference number: 2 (lower is better) Translates to: SSRGANECPLVYTLKPLDQLVSG*GGYRVP Trigger: TGGGACTCTGTAACCACCCCAACCACTGACTAGCTG...ATCTAAGGGCTTAAGTGTGTAAACCAGAGGACACTCATTAGCACCTCTTGAAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| 3UTR-3UTR CCA 90 bp | CAGAGTGGGATAGCTAAAGAATCCAGATTCACAGACCAAGTAGCTCCTACTGGGCATTTCTTAAAAGCCTaGGCTCCCCTTCTATCTGTC | + |
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Preference number: 2 (lower is better) Translates to: QSGIAKESRFTDQVAPTGHFLKA*APLLSV Trigger: GACAGATAGAAGGGGAGCCCAGGCTTTTAAGAAATG...CCCAGTAGGAGCTACTTGGTCTGTGAATCTGGATTCTTTAGCTATCCCACTCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| 3UTR-3UTR CCA 90 bp | CAACTTCAGGAGCTAACACATGTCCTGTTTTTATTACTATCACGTGGCTGTCAGCATGAAATCAGAGAGTaGGAAAGGCAGAGGGGGCTT | + |
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Preference number: 2 (lower is better) Translates to: QLQELTHVLFLLLSRGCQHEIRE*ERQRGL Trigger: AAGCCCCCTCTGCCTTTCCCACTCTCTGATTTCATG...CTGACAGCCACGTGATAGTAATAAAAACAGGACATGTGTTAGCTCCTGAAGTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000021063.13 |
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| 3UTR-3UTR TCA 90 bp | CAGGAGCTAACACATGTCCTGTTTTTATTACTATCACGTGGCTGTCAGGTGAATACACTCAAGGAAAGCTaGGACACAAACCTTTCTGTC | + |
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Preference number: 2 (lower is better) Translates to: QELTHVLFLLLSRGCQVNTLKES*DTNLSV Trigger: GACAGAAAGGTTTGTGTCTCAGCTTTCCTTGAGTGT...ATTCACCTGACAGCCACGTGATAGTAATAAAAACAGGACATGTGTTAGCTCCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021063.13 |
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| 3UTR-3UTR CAA 90 bp | ACTTCTCTGGGGTTCCAACGTGGCCTAAAGACTGCTGGTTCTCCAGGAATCCTCCCAGCTAGTCAGTGGTaGGGGTGGTTACAGAGTCCC | + |
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Preference number: 3 (lower is better) Translates to: TSLGFQRGLKTAGSPGILPASQW*GWLQSP Trigger: GGGACTCTGTAACCACCCCAACCACTGACTAGCTGG...GAGGATTCCTGGAGAACCAGCAGTCTTTAGGCCACGTTGGAACCCCAGAGAAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| 3UTR CCA 72 bp | GATGGCTTCTCACTGCCAGCTAGTCAGTGGTTGGGGTaGTTACAGAGTCCCATTGTTGTCTCTTTTCTTGGC | + |
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Preference number: 3 (lower is better) Translates to: DGFSLPASQWLG*LQSPIVVSFLG Trigger: GCCAAGAAAAGAGACAACAATGGGACTCTGTAACCACCCCAACCACTGACTAGCTGGCAGTGAGAAGCCATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| 3UTR TCA 72 bp | AGTGTGTGGACTACCACACTCATGCAGTCCCAAGGCTaGCAGTGTTCTTCCTACATCTTGGACAGGTCTCTT | + |
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Preference number: 3 (lower is better) Translates to: SVWTTTLMQSQG*QCSSYILDRSL Trigger: AAGAGACCTGTCCAAGATGTAGGAAGAACACTGTCAGCCTTGGGACTGCATGAGTGTGGTAGTCCACACACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| 3UTR CCA 72 bp | CTGACATCAGTGTCTAACTTCTCTGGGGTTCCAACGTaGCCTAAAGACTGCTGGTTCTCCAGGAATCCTCTA | + |
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Preference number: 3 (lower is better) Translates to: LTSVSNFSGVPT*PKDCWFSRNPL Trigger: TAGAGGATTCCTGGAGAACCAGCAGTCTTTAGGCCACGTTGGAACCCCAGAGAAGTTAGACACTGATGTCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| 3UTR-3UTR CAA 90 bp | TCTCCCACCTTCTCTCTTCTGCTGACATCAGTGTCTAACTTCTCTGGGGTTCCATACAGAGTCCCATTGTaGTCTCTTTTCTTGGCTCCC | + |
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Preference number: 3 (lower is better) Translates to: SPTFSLLLTSVSNFSGVPYRVPL*SLFLAP Trigger: GGGAGCCAAGAAAAGAGACAACAATGGGACTCTGTA...TGGAACCCCAGAGAAGTTAGACACTGATGTCAGCAGAAGAGAGAAGGTGGGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| 3UTR-3UTR CAA 90 bp | CAGAGTGGGATAGCTAAAGAATCCAGATTCACAGACCAAGTAGCTCCTACTGGGTGTTCTTCCTACATCTaGGACAGGTCTCTTCAAGAG | + |
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Preference number: 3 (lower is better) Translates to: QSGIAKESRFTDQVAPTGCSSYI*DRSLQE Trigger: CTCTTGAAGAGACCTGTCCAAGATGTAGGAAGAACA...CCCAGTAGGAGCTACTTGGTCTGTGAATCTGGATTCTTTAGCTATCCCACTCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| 3UTR-3UTR CAA 90 bp | TACCACACTCATGCAGTCCCAAGGCTGACAGTGTTCTTCCTACATCTTGGACAGGATGATGATGAGTCTTaGTCTTTCTTCTACTTACTG | + |
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Preference number: 3 (lower is better) Translates to: YHTHAVPRLTVFFLHLGQDDDES*SFFYLL Trigger: CAGTAAGTAGAAGAAAGACAAAGACTCATCATCATC...CTGTCCAAGATGTAGGAAGAACACTGTCAGCCTTGGGACTGCATGAGTGTGGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| 3UTR TCA 72 bp | ATGTCCTGTTTTTATTACTATCACGTGGCTGTCAGGTaGATAAAAACAAATAGTATGAACACACTCAAGGAA | + |
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Preference number: 3 (lower is better) Translates to: MSCFYYYHVAVR*IKTNSMNTLKE Trigger: TTCCTTGAGTGTGTTCATACTATTTGTTTTTATTCACCTGACAGCCACGTGATAGTAATAAAAACAGGACAT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000021063.13 |
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| CDS-3UTR TCA 90 bp | CTGACATCAGTGTCTAACTTCTCTGGGGTTCCAACGTGGCCTAAAGACTGCTGGAGTCGCCGGGGTCTCTaGGGAGCCTTTTCGCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: LTSVSNFSGVPTWPKDCWSRRGL*GAFSQL Trigger: GAGCTGCGAAAAGGCTCCTCAGAGACCCCGGCGACT...CCAGCAGTCTTTAGGCCACGTTGGAACCCCAGAGAAGTTAGACACTGATGTCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| CDS-3UTR GCA 90 bp | TGTGGACTACCACACTCATGCAGTCCCAAGGCTGACAGTGTTCTTCCTACATCTCTTCCATCTTCACAATaGGCCCATCGGCCCGCTCCG | + |
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Preference number: 4 (lower is better) Translates to: CGLPHSCSPKADSVLPTSLPSSQ*AHRPAP Trigger: CGGAGCGGGCCGATGGGCGCATTGTGAAGATGGAAG...AGATGTAGGAAGAACACTGTCAGCCTTGGGACTGCATGAGTGTGGTAGTCCACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| CDS-3UTR CCA 90 bp | TCTCCCACCTTCTCTCTTCTGCTGACATCAGTGTCTAACTTCTCTGGGGTTCCAGAAGCCGCCCTTCCTTaGCCAGCTTCTCGCACTCAG | + |
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Preference number: 4 (lower is better) Translates to: SPTFSLLLTSVSNFSGVPEAALP*PASRTQ Trigger: CTGAGTGCGAGAAGCTGGCCAAGGAAGGGCGGCTTC...TGGAACCCCAGAGAAGTTAGACACTGATGTCAGCAGAAGAGAGAAGGTGGGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| CDS-3UTR TCA 90 bp | TTAGCTTCTCCAGTGTGTGGACTACCACACTCATGCAGTCCCAAGGCTGACAGTGTTTCGATGACTTCTTaGAGCCGCCCTTCCTTGGCC | + |
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Preference number: 4 (lower is better) Translates to: LASPVCGLPHSCSPKADSVSMTS*SRPSLA Trigger: GGCCAAGGAAGGGCGGCTTCAAGAAGTCATCGAAAC...ACTGTCAGCCTTGGGACTGCATGAGTGTGGTAGTCCACACACTGGAGAAGCTAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| CDS-3UTR CCA 90 bp | TCTCCCACCTTCTCTCTTCTGCTGACATCAGTGTCTAACTTCTCTGGGGTTCCACCAAGATGCGGGACGTaGACACCATGTCAGAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: SPTFSLLLTSVSNFSGVPPRCGT*TPCQRQ Trigger: CTGCCTCTGACATGGTGTCCACGTCCCGCATCTTGG...TGGAACCCCAGAGAAGTTAGACACTGATGTCAGCAGAAGAGAGAAGGTGGGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| CDS-3UTR GCA 90 bp | CCCTGGCAACTTCAGGAGCTAACACATGTCCTGTTTTTATTACTATCACGTGGCCTTCCATCTTCACAATaGGCCCATCGGCCCGCTCCG | + |
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Preference number: 4 (lower is better) Translates to: PWQLQELTHVLFLLLSRGLPSSQ*AHRPAP Trigger: CGGAGCGGGCCGATGGGCGCATTGTGAAGATGGAAG...GCCACGTGATAGTAATAAAAACAGGACATGTGTTAGCTCCTGAAGTTGCCAGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021063.13 |
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| CDS-3UTR GCA 90 bp | CCTGTTTCTCCCACCTTCTCTCTTCTGCTGACATCAGTGTCTAACTTCTCTGGGGAGGCAGTCCGGGTCTaGTTTTCTAGAGAGAGAAGG | + |
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Preference number: 4 (lower is better) Translates to: PVSPTFSLLLTSVSNFSGEAVRV*FSRERR Trigger: CCTTCTCTCTCTAGAAAAGCAGACCCGGACTGCCTC...CCCAGAGAAGTTAGACACTGATGTCAGCAGAAGAGAGAAGGTGGGAGAAACAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| CDS-3UTR GCA 90 bp | ACTTCTCTGGGGTTCCAACGTGGCCTAAAGACTGCTGGTTCTCCAGGAATCCTCTGGCTCTGTAGTGTTTaGAGATGGACAGATAGGACC | + |
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Preference number: 4 (lower is better) Translates to: TSLGFQRGLKTAGSPGILWLCSV*RWTDRT Trigger: GGTCCTATCTGTCCATCTGCAAACACTACAGAGCCA...GAGGATTCCTGGAGAACCAGCAGTCTTTAGGCCACGTTGGAACCCCAGAGAAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| CDS-3UTR GCA 90 bp | CTGCTGACATCAGTGTCTAACTTCTCTGGGGTTCCAACGTGGCCTAAAGACTGCCTTTTCAGAGCCTGCTaGCACTTGTCACTTTCTGCC | + |
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Preference number: 4 (lower is better) Translates to: LLTSVSNFSGVPTWPKDCLFRAC*HLSLSA Trigger: GGCAGAAAGTGACAAGTGGCAGCAGGCTCTGAAAAG...GCAGTCTTTAGGCCACGTTGGAACCCCAGAGAAGTTAGACACTGATGTCAGCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| CDS-3UTR CCA 90 bp | ACCCTGGCAACTTCAGGAGCTAACACATGTCCTGTTTTTATTACTATCACGTGGGAAGCCGCCCTTCCTTaGCCAGCTTCTCGCACTCAG | + |
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Preference number: 4 (lower is better) Translates to: TLATSGANTCPVFITITWEAALP*PASRTQ Trigger: CTGAGTGCGAGAAGCTGGCCAAGGAAGGGCGGCTTC...CCACGTGATAGTAATAAAAACAGGACATGTGTTAGCTCCTGAAGTTGCCAGGGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021063.13 |
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| CDS-3UTR GCA 90 bp | TACCACACTCATGCAGTCCCAAGGCTGACAGTGTTCTTCCTACATCTTGGACAGCTCCCTAGAAGCAGATaGAGAGATGGATACAGCACC | + |
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Preference number: 4 (lower is better) Translates to: YHTHAVPRLTVFFLHLGQLPRSR*RDGYST Trigger: GGTGCTGTATCCATCTCTGCATCTGCTTCTAGGGAG...CTGTCCAAGATGTAGGAAGAACACTGTCAGCCTTGGGACTGCATGAGTGTGGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| CDS-3UTR CCA 90 bp | GCAGTTATCATGAAATCAGAGAGTGGGAAAGGCAGAGGGGGCTTAAACACATTTCCAAGATGCGGGACGTaGACACCATGTCAGAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: AVIMKSESGKGRGGLNTFPRCGT*TPCQRQ Trigger: CTGCCTCTGACATGGTGTCCACGTCCCGCATCTTGG...AAATGTGTTTAAGCCCCCTCTGCCTTTCCCACTCTCTGATTTCATGATAACTGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021063.13 |
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| CDS-3UTR CCA 90 bp | CTGACATCAGTGTCTAACTTCTCTGGGGTTCCAACGTGGCCTAAAGACTGCTGGAAGCAGATGCAGAGATaGATACAGCACCAAGGGAGA | + |
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Preference number: 4 (lower is better) Translates to: LTSVSNFSGVPTWPKDCWKQMQR*IQHQGR Trigger: TCTCCCTTGGTGCTGTATCCATCTCTGCATCTGCTT...CCAGCAGTCTTTAGGCCACGTTGGAACCCCAGAGAAGTTAGACACTGATGTCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| CDS-3UTR TCA 90 bp | CCTGTTTCTCCCACCTTCTCTCTTCTGCTGACATCAGTGTCTAACTTCTCTGGGTCATCTGCTCCAGAATaGATTCCACTCGCTCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: PVSPTFSLLLTSVSNFSGSSAPE*IPLAPS Trigger: AGAAGGAGCGAGTGGAATTCATTCTGGAGCAGATGA...CCCAGAGAAGTTAGACACTGATGTCAGCAGAAGAGAGAAGGTGGGAGAAACAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| CDS-3UTR GCA 90 bp | CTGACATCAGTGTCTAACTTCTCTGGGGTTCCAACGTGGCCTAAAGACTGCTGGACACTTTTCAGAGCCTaGTGCCACTTGTCACTTTCT | + |
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Preference number: 4 (lower is better) Translates to: LTSVSNFSGVPTWPKDCWTLFRA*CHLSLS Trigger: AGAAAGTGACAAGTGGCAGCAGGCTCTGAAAAGTGT...CCAGCAGTCTTTAGGCCACGTTGGAACCCCAGAGAAGTTAGACACTGATGTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| CDS-3UTR CCA 90 bp | GAGTCTTTGTCTTTCTTCTACTTACTGACTGCCCCAAGAAACAGCAGTTCCACCAGTCCTCAACAAGAGTaGACCAGCGCATCAGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: ESLSFFYLLTAPRNSSSTSPQQE*TSASAP Trigger: TGGAGCTGATGCGCTGGTCCACTCTTGTTGAGGACT...GGTGGAACTGCTGTTTCTTGGGGCAGTCAGTAAGTAGAAGAAAGACAAAGACTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| 3UTR CAA 72 bp | GAATCCAGATTCACAGACCAAGTAGCTCCTACTGGGTaGTTAGCTTCTCCAGTGTGTGGACTACCACACTCA | + |
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Preference number: 4 (lower is better) Translates to: ESRFTDQVAPTG*LASPVCGLPHS Trigger: TGAGTGTGGTAGTCCACACACTGGAGAAGCTAACAACCCAGTAGGAGCTACTTGGTCTGTGAATCTGGATTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| CDS-3UTR TCA 90 bp | TCACCACCCTGGCAACTTCAGGAGCTAACACATGTCCTGTTTTTATTACTATCAGTTTCGATGACTTCTTaGAGCCGCCCTTCCTTGGCC | + |
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Preference number: 4 (lower is better) Translates to: SPPWQLQELTHVLFLLLSVSMTS*SRPSLA Trigger: GGCCAAGGAAGGGCGGCTTCAAGAAGTCATCGAAAC...TGATAGTAATAAAAACAGGACATGTGTTAGCTCCTGAAGTTGCCAGGGTGGTGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021063.13 |
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| CDS-3UTR TCA 90 bp | GCAGTTATCATGAAATCAGAGAGTGGGAAAGGCAGAGGGGGCTTAAACACATTTTCCACCTGTAACTCTTaGAGGATGGAGGCAGCCTCT | + |
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Preference number: 4 (lower is better) Translates to: AVIMKSESGKGRGGLNTFSTCNS*RMEAAS Trigger: AGAGGCTGCCTCCATCCTTCAAGAGTTACAGGTGGA...AAATGTGTTTAAGCCCCCTCTGCCTTTCCCACTCTCTGATTTCATGATAACTGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021063.13 |
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| CDS-3UTR TCA 90 bp | CTTTATGACACAATCCTTTATAAACACTTGTTAATCACCACCCTGGCAACTTCAAGTCGCCGGGGTCTCTaGGGAGCCTTTTCGCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: LYDTILYKHLLITTLATSSRRGL*GAFSQL Trigger: GAGCTGCGAAAAGGCTCCTCAGAGACCCCGGCGACT...TGAAGTTGCCAGGGTGGTGATTAACAAGTGTTTATAAAGGATTGTGTCATAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021063.13 |
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| CDS-3UTR GCA 90 bp | GTCTTTGTCTTTCTTCTACTTACTGACTGCCCCAAGAAACAGCAGTTCCACCACTGTGCTCCACCACTCTaGTCTTCAAGTCTTTCCACC | + |
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Preference number: 4 (lower is better) Translates to: VFVFLLLTDCPKKQQFHHCAPPL*SSSLST Trigger: GGTGGAAAGACTTGAAGAGCAGAGTGGTGGAGCACA...GTGGTGGAACTGCTGTTTCTTGGGGCAGTCAGTAAGTAGAAGAAAGACAAAGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| CDS-3UTR CCA 90 bp | GCAGTTATCATGAAATCAGAGAGTGGGAAAGGCAGAGGGGGCTTAAACACATTTCAATCGCAGCTTGACTaGCAGGTCTGTGATCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: AVIMKSESGKGRGGLNTFQSQLD*QVCDLL Trigger: GAGGAGATCACAGACCTGCCAGTCAAGCTGCGATTG...AAATGTGTTTAAGCCCCCTCTGCCTTTCCCACTCTCTGATTTCATGATAACTGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021063.13 |
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| CDS-3UTR CCA 90 bp | TACCACACTCATGCAGTCCCAAGGCTGACAGTGTTCTTCCTACATCTTGGACAGGTAACTCTTGAAGGATaGAGGCAGCCTCTTTCACAT | + |
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Preference number: 4 (lower is better) Translates to: YHTHAVPRLTVFFLHLGQVTLEG*RQPLSH Trigger: ATGTGAAAGAGGCTGCCTCCATCCTTCAAGAGTTAC...CTGTCCAAGATGTAGGAAGAACACTGTCAGCCTTGGGACTGCATGAGTGTGGTA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| CDS-3UTR CCA 90 bp | ACCCTGGCAACTTCAGGAGCTAACACATGTCCTGTTTTTATTACTATCACGTGGAGTCCTCAACAAGAGTaGACCAGCGCATCAGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: TLATSGANTCPVFITITWSPQQE*TSASAP Trigger: TGGAGCTGATGCGCTGGTCCACTCTTGTTGAGGACT...CCACGTGATAGTAATAAAAACAGGACATGTGTTAGCTCCTGAAGTTGCCAGGGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021063.13 |
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| CDS-3UTR TCA 90 bp | TTAGCTTCTCCAGTGTGTGGACTACCACACTCATGCAGTCCCAAGGCTGACAGTCTGACTCCGTCGTTTTaGCAGAAGCATAATATTTTC | + |
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Preference number: 4 (lower is better) Translates to: LASPVCGLPHSCSPKADSLTPSF*QKHNIF Trigger: GAAAATATTATGCTTCTGTCAAAACGACGGAGTCAG...ACTGTCAGCCTTGGGACTGCATGAGTGTGGTAGTCCACACACTGGAGAAGCTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| CDS-3UTR TCA 90 bp | CAACTTCAGGAGCTAACACATGTCCTGTTTTTATTACTATCACGTGGCTGTCAGCGAGAGGAAAGCCTCTaGCTCATCCACAGAGAGATC | + |
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Preference number: 4 (lower is better) Translates to: QLQELTHVLFLLLSRGCQREESL*LIHREI Trigger: GATCTCTCTGTGGATGAGTCAGAGGCTTTCCTCTCG...CTGACAGCCACGTGATAGTAATAAAAACAGGACATGTGTTAGCTCCTGAAGTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021063.13 |
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| CDS-3UTR GCA 90 bp | ATCACCACCCTGGCAACTTCAGGAGCTAACACATGTCCTGTTTTTATTACTATCGAGGCAGTCCGGGTCTaGTTTTCTAGAGAGAGAAGG | + |
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Preference number: 4 (lower is better) Translates to: ITTLATSGANTCPVFITIEAVRV*FSRERR Trigger: CCTTCTCTCTCTAGAAAAGCAGACCCGGACTGCCTC...GATAGTAATAAAAACAGGACATGTGTTAGCTCCTGAAGTTGCCAGGGTGGTGAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021063.13 |
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| CDS-3UTR GCA 90 bp | AAAGAATCCAGATTCACAGACCAAGTAGCTCCTACTGGGTTGTTAGCTTCTCCACCACTTGTCACTTTCTaGCTGAATGCAGGGAGTGTC | + |
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Preference number: 4 (lower is better) Translates to: KESRFTDQVAPTGLLASPPLVTF*LNAGSV Trigger: GACACTCCCTGCATTCAGGCAGAAAGTGACAAGTGG...TGGAGAAGCTAACAACCCAGTAGGAGCTACTTGGTCTGTGAATCTGGATTCTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| CDS-3UTR GCA 90 bp | GCAGTTATCATGAAATCAGAGAGTGGGAAAGGCAGAGGGGGCTTAAACACATTTTGTGCTCCACCACTCTaGTCTTCAAGTCTTTCCACC | + |
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Preference number: 4 (lower is better) Translates to: AVIMKSESGKGRGGLNTFCAPPL*SSSLST Trigger: GGTGGAAAGACTTGAAGAGCAGAGTGGTGGAGCACA...AAATGTGTTTAAGCCCCCTCTGCCTTTCCCACTCTCTGATTTCATGATAACTGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021063.13 |
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| CDS-3UTR TCA 90 bp | ACCCTGGCAACTTCAGGAGCTAACACATGTCCTGTTTTTATTACTATCACGTGGTCATCTGCTCCAGAATaGATTCCACTCGCTCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: TLATSGANTCPVFITITWSSAPE*IPLAPS Trigger: AGAAGGAGCGAGTGGAATTCATTCTGGAGCAGATGA...CCACGTGATAGTAATAAAAACAGGACATGTGTTAGCTCCTGAAGTTGCCAGGGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021063.13 |
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| CDS-3UTR GCA 90 bp | TCAGGAGCTAACACATGTCCTGTTTTTATTACTATCACGTGGCTGTCAGGTGAACCACTTGTCACTTTCTaGCTGAATGCAGGGAGTGTC | + |
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Preference number: 4 (lower is better) Translates to: SGANTCPVFITITWLSGEPLVTF*LNAGSV Trigger: GACACTCCCTGCATTCAGGCAGAAAGTGACAAGTGG...TTCACCTGACAGCCACGTGATAGTAATAAAAACAGGACATGTGTTAGCTCCTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021063.13 |
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| CDS-3UTR GCA 90 bp | TCACCACCCTGGCAACTTCAGGAGCTAACACATGTCCTGTTTTTATTACTATCACTTTTCAGAGCCTGCTaGCACTTGTCACTTTCTGCC | + |
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Preference number: 4 (lower is better) Translates to: SPPWQLQELTHVLFLLLSLFRAC*HLSLSA Trigger: GGCAGAAAGTGACAAGTGGCAGCAGGCTCTGAAAAG...TGATAGTAATAAAAACAGGACATGTGTTAGCTCCTGAAGTTGCCAGGGTGGTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021063.13 |
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| 3UTR CAA 72 bp | AGGTCTCACTATGTAGCCAGCTTTTTCGTTTTCCTTTaGCATCTGGTTGAGAGTACACCTGCCCTGTTTCTC | + |
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Preference number: 4 (lower is better) Translates to: RSHYVASFFVFL*HLVESTPALFL Trigger: GAGAAACAGGGCAGGTGTACTCTCAACCAGATGCAAAAGGAAAACGAAAAAGCTGGCTACATAGTGAGACCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| CDS-3UTR GCA 90 bp | ACCCTGGCAACTTCAGGAGCTAACACATGTCCTGTTTTTATTACTATCACGTGGAGGCAGAGTCTCATCTaGTCCAGAATGAATTCCACT | + |
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Preference number: 4 (lower is better) Translates to: TLATSGANTCPVFITITWRQSLI*SRMNST Trigger: AGTGGAATTCATTCTGGAGCAGATGAGACTCTGCCT...CCACGTGATAGTAATAAAAACAGGACATGTGTTAGCTCCTGAAGTTGCCAGGGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021063.13 |
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| CDS-3UTR GCA 90 bp | ATCACCACCCTGGCAACTTCAGGAGCTAACACATGTCCTGTTTTTATTACTATCTGGCTCTGTAGTGTTTaGAGATGGACAGATAGGACC | + |
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Preference number: 4 (lower is better) Translates to: ITTLATSGANTCPVFITIWLCSV*RWTDRT Trigger: GGTCCTATCTGTCCATCTGCAAACACTACAGAGCCA...GATAGTAATAAAAACAGGACATGTGTTAGCTCCTGAAGTTGCCAGGGTGGTGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021063.13 |
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| CDS-3UTR GCA 90 bp | TCAGGAGCTAACACATGTCCTGTTTTTATTACTATCACGTGGCTGTCAGGTGAAACACTTTTCAGAGCCTaGTGCCACTTGTCACTTTCT | + |
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Preference number: 4 (lower is better) Translates to: SGANTCPVFITITWLSGETLFRA*CHLSLS Trigger: AGAAAGTGACAAGTGGCAGCAGGCTCTGAAAAGTGT...TTCACCTGACAGCCACGTGATAGTAATAAAAACAGGACATGTGTTAGCTCCTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021063.13 |
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| CDS-3UTR CCA 90 bp | CAGGAGCTAACACATGTCCTGTTTTTATTACTATCACGTGGCTGTCAGGTGAATGTAACTCTTGAAGGATaGAGGCAGCCTCTTTCACAT | + |
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Preference number: 4 (lower is better) Translates to: QELTHVLFLLLSRGCQVNVTLEG*RQPLSH Trigger: ATGTGAAAGAGGCTGCCTCCATCCTTCAAGAGTTAC...ATTCACCTGACAGCCACGTGATAGTAATAAAAACAGGACATGTGTTAGCTCCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021063.13 |
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| CDS-3UTR TCA 90 bp | CTTTATGACACAATCCTTTATAAACACTTGTTAATCACCACCCTGGCAACTTCACTGACTCCGTCGTTTTaGCAGAAGCATAATATTTTC | + |
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Preference number: 4 (lower is better) Translates to: LYDTILYKHLLITTLATSLTPSF*QKHNIF Trigger: GAAAATATTATGCTTCTGTCAAAACGACGGAGTCAG...TGAAGTTGCCAGGGTGGTGATTAACAAGTGTTTATAAAGGATTGTGTCATAAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021063.13 |
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| CDS GCA 90 bp | AGATGCAGAGATGGATACAGCACCAAGGGAGATTCTGCGAGGTCTTaGTTGGGTGGTCCATACATCCACAGAGAGATCCAGAAGTTGTGC | + |
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Preference number: 5 (lower is better) Translates to: RCRDGYSTKGDSARS*LGGPYIHREIQKLC Trigger: GCACAACTTCTGGATCTCTCTGTGGATGTATGGACCACCCAAGCAAGACCTCGCAGAATCTCCCTTGGTGCTGTATCCATCTCTGCATCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| CDS-3UTR CAA 90 bp | TCAGGAGCTAACACATGTCCTGTTTTTATTACTATCACGTGGCTGTCAGGTGAAGGTTTCGATGACTTCTaGAAGCCGCCCTTCCTTGGC | + |
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Preference number: 5 (lower is better) Translates to: SGANTCPVFITITWLSGEGFDDF*KPPFLG Trigger: GCCAAGGAAGGGCGGCTTCAAGAAGTCATCGAAACC...TTCACCTGACAGCCACGTGATAGTAATAAAAACAGGACATGTGTTAGCTCCTGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021063.13 |
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| CDS-3UTR CAA 90 bp | ATAGCTAAAGAATCCAGATTCACAGACCAAGTAGCTCCTACTGGGTTGTTAGCTGGTTTCGATGACTTCTaGAAGCCGCCCTTCCTTGGC | + |
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Preference number: 5 (lower is better) Translates to: IAKESRFTDQVAPTGLLAGFDDF*KPPFLG Trigger: GCCAAGGAAGGGCGGCTTCAAGAAGTCATCGAAACC...AGCTAACAACCCAGTAGGAGCTACTTGGTCTGTGAATCTGGATTCTTTAGCTAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| CDS-3UTR CAA 90 bp | CAGGAGCTAACACATGTCCTGTTTTTATTACTATCACGTGGCTGTCAGGTGAATTTGGGTCTCTGGAAGTaGATGACTCCAGCCAACCTG | + |
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Preference number: 5 (lower is better) Translates to: QELTHVLFLLLSRGCQVNLGLWK*MTPANL Trigger: CAGGTTGGCTGGAGTCATCAACTTCCAGAGACCCAA...ATTCACCTGACAGCCACGTGATAGTAATAAAAACAGGACATGTGTTAGCTCCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021063.13 |
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| CDS-3UTR CAA 90 bp | TGTGGACTACCACACTCATGCAGTCCCAAGGCTGACAGTGTTCTTCCTACATCTACTGCTGAACCATTTTaGCAACTGCTTGTTTTAACT | + |
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Preference number: 5 (lower is better) Translates to: CGLPHSCSPKADSVLPTSTAEPF*QLLVLT Trigger: AGTTAAAACAAGCAGTTGCAAAAATGGTTCAGCAGT...AGATGTAGGAAGAACACTGTCAGCCTTGGGACTGCATGAGTGTGGTAGTCCACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| CDS-3UTR CAA 90 bp | ACCCTGGCAACTTCAGGAGCTAACACATGTCCTGTTTTTATTACTATCACGTGGTTAGCAAAGATGGTCTaGTTAACGACTAGATTCGAG | + |
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Preference number: 5 (lower is better) Translates to: TLATSGANTCPVFITITWLAKMV*LTTRFE Trigger: CTCGAATCTAGTCGTTAACAAGACCATCTTTGCTAA...CCACGTGATAGTAATAAAAACAGGACATGTGTTAGCTCCTGAAGTTGCCAGGGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021063.13 |
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| CDS-3UTR CAA 90 bp | TTAATCACCACCCTGGCAACTTCAGGAGCTAACACATGTCCTGTTTTTATTACTATGAGGTGTGTCGTTTaGTTAACCAGAGACATCAGC | + |
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Preference number: 5 (lower is better) Translates to: LITTLATSGANTCPVFITMRCVV*LTRDIS Trigger: GCTGATGTCTCTGGTTAACAAAACGACACACCTCAT...AGTAATAAAAACAGGACATGTGTTAGCTCCTGAAGTTGCCAGGGTGGTGATTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021063.13 |
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| CDS-3UTR CAA 90 bp | CTTTATGACACAATCCTTTATAAACACTTGTTAATCACCACCCTGGCAACTTCAACTGCTGAACCATTTTaGCAACTGCTTGTTTTAACT | + |
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Preference number: 5 (lower is better) Translates to: LYDTILYKHLLITTLATSTAEPF*QLLVLT Trigger: AGTTAAAACAAGCAGTTGCAAAAATGGTTCAGCAGT...TGAAGTTGCCAGGGTGGTGATTAACAAGTGTTTATAAAGGATTGTGTCATAAAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021063.13 |
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| CDS CCA 72 bp | CAGCACCAAGGGAGATTCTGCGAGGTCTTGCTTGGGTaGTCCATACATCCACAGAGAGATCCAGAAGTTGTG | + |
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Preference number: 6 (lower is better) Translates to: QHQGRFCEVLLG*SIHPQRDPEVV Trigger: CACAACTTCTGGATCTCTCTGTGGATGTATGGACCACCCAAGCAAGACCTCGCAGAATCTCCCTTGGTGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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| CDS CAA 90 bp | CAGATGCAGAGATGGATACAGCACCAAGGGAGATTCTGCGAGGTCTaGCTTGGGTGGTCCATACATCCACAGAGAGATCCAGAAGTTGTG | + |
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Preference number: 6 (lower is better) Translates to: QMQRWIQHQGRFCEV*LGWSIHPQRDPEVV Trigger: CACAACTTCTGGATCTCTCTGTGGATGTATGGACCACCCAAGCAAGACCTCGCAGAATCTCCCTTGGTGCTGTATCCATCTCTGCATCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106752.10 |
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