Pregenerated sensors for PSMD10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031429Ensembl transcript IDs: ENSMUST00000033805.15, ENSMUST00000112978.2
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTCCAAAGTAATCAAGATTTAATGAATGGCATCAGTAGAACAAGCTaGCCAGTTTTTCAACCCTGGAAAGTGGGTAGAAAGCATAGACCC | + |
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Preference number: 1 (lower is better) Translates to: LQSNQDLMNGISRTS*PVFQPWKVGRKHRP Trigger: GGGTCTATGCTTTCTACCCACTTTCCAGGGTTGAAAAACTGGTCAGCTTGTTCTACTGATGCCATTCATTAAATCTTGATTACTTTGGAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033805.15 ENSMUST00000112978.2 |
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| 3UTR-3UTR CCA 90 bp | CAGGTGCATGGAAGACGCTCAAGACAGGACAGCCACAACCACTTACTCCAAAGTAACCCAGGCCCCCTTTaGCCACTTGCAGGGGTGTCT | + |
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Preference number: 2 (lower is better) Translates to: QVHGRRSRQDSHNHLLQSNPGPL*PLAGVS Trigger: AGACACCCCTGCAAGTGGCCAAAGGGGGCCTGGGTT...ACTTTGGAGTAAGTGGTTGTGGCTGTCCTGTCTTGAGCGTCTTCCATGCACCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112978.2 |
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| 3UTR-3UTR TCA 90 bp | ACGGTGGGTCAGCAGGTGCATGGAAGACGCTCAAGACAGGACAGCCACAACCACTTTCTGCTAGTCTCTTaGGTATTAAACCCAGGCCCC | + |
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Preference number: 2 (lower is better) Translates to: TVGQQVHGRRSRQDSHNHFLLVS*VLNPGP Trigger: GGGGCCTGGGTTTAATACTCAAGAGACTAGCAGAAA...GTGGTTGTGGCTGTCCTGTCTTGAGCGTCTTCCATGCACCTGCTGACCCACCGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112978.2 |
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| 3UTR-3UTR TCA 90 bp | ACGGTGGGTCAGCAGGTGCATGGAAGACGCTCAAGACAGGACAGCCACAACCACATCAAGTTACGAAGGTaGGGAAACATCTTCATGTGT | + |
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Preference number: 2 (lower is better) Translates to: TVGQQVHGRRSRQDSHNHIKLRR*GNIFMC Trigger: ACACATGAAGATGTTTCCTCACCTTCGTAACTTGAT...GTGGTTGTGGCTGTCCTGTCTTGAGCGTCTTCCATGCACCTGCTGACCCACCGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033805.15 ENSMUST00000112978.2 |
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| 3UTR-3UTR GCA 90 bp | AAACAGGTCAGGATTTGGTTTGACTGCACAGAGGAAAGCTCCCTAGAACAACCTCGGTGGGTCAGCAGGTaGATGGAAGACGCTCAAGAC | + |
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Preference number: 2 (lower is better) Translates to: KQVRIWFDCTEESSLEQPRWVSR*MEDAQD Trigger: GTCTTGAGCGTCTTCCATGCACCTGCTGACCCACCG...AGGTTGTTCTAGGGAGCTTTCCTCTGTGCAGTCAAACCAAATCCTGACCTGTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033805.15 ENSMUST00000112978.2 |
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| 3UTR-3UTR GCA 90 bp | ATGGAAGACGCTCAAGACAGGACAGCCACAACCACTTACTCCAAAGTAATCAAGCGGTGGGTCAGCAGGTaGATGGAAGACGCTCAAGAC | + |
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Preference number: 2 (lower is better) Translates to: MEDAQDRTATTTYSKVIKRWVSR*MEDAQD Trigger: GTCTTGAGCGTCTTCCATGCACCTGCTGACCCACCG...CTTGATTACTTTGGAGTAAGTGGTTGTGGCTGTCCTGTCTTGAGCGTCTTCCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033805.15 ENSMUST00000112978.2 |
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| 3UTR-3UTR CCA 90 bp | TCTTCATGTGTCCAACACTTTCCGGACACTGAGGACCACAGACCGCACACAGACTTCAACCCTGGAAAGTaGGTAGAAAGCATAGACCCG | + |
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Preference number: 2 (lower is better) Translates to: SSCVQHFPDTEDHRPHTDFNPGK*VESIDP Trigger: CGGGTCTATGCTTTCTACCCACTTTCCAGGGTTGAA...GTCTGTGTGCGGTCTGTGGTCCTCAGTGTCCGGAAAGTGTTGGACACATGAAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112978.2 |
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| 3UTR-3UTR CCA 90 bp | CAGGTGCATGGAAGACGCTCAAGACAGGACAGCCACAACCACTTACTCCAAAGTTTCAACCCTGGAAAGTaGGTAGAAAGCATAGACCCG | + |
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Preference number: 2 (lower is better) Translates to: QVHGRRSRQDSHNHLLQSFNPGK*VESIDP Trigger: CGGGTCTATGCTTTCTACCCACTTTCCAGGGTTGAA...ACTTTGGAGTAAGTGGTTGTGGCTGTCCTGTCTTGAGCGTCTTCCATGCACCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033805.15 ENSMUST00000112978.2 |
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| 3UTR-3UTR TCA 90 bp | AGCAGGTGCATGGAAGACGCTCAAGACAGGACAGCCACAACCACTTACTCCAAAATCAGTAGAACAAGCTaGCCAGTTTTTCAACCCTGG | + |
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Preference number: 2 (lower is better) Translates to: SRCMEDAQDRTATTTYSKISRTS*PVFQPW Trigger: CCAGGGTTGAAAAACTGGTCAGCTTGTTCTACTGAT...TTTGGAGTAAGTGGTTGTGGCTGTCCTGTCTTGAGCGTCTTCCATGCACCTGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033805.15 ENSMUST00000112978.2 |
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| 3UTR-3UTR TCA 90 bp | CAGGTGCATGGAAGACGCTCAAGACAGGACAGCCACAACCACTTACTCCAAAGTATCAGTAGAACAAGCTaGCCAGTTTTTCAACCCTGG | + |
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Preference number: 2 (lower is better) Translates to: QVHGRRSRQDSHNHLLQSISRTS*PVFQPW Trigger: CCAGGGTTGAAAAACTGGTCAGCTTGTTCTACTGAT...ACTTTGGAGTAAGTGGTTGTGGCTGTCCTGTCTTGAGCGTCTTCCATGCACCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033805.15 ENSMUST00000112978.2 |
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| 3UTR-3UTR GCA 90 bp | TCTTCATGTGTCCAACACTTTCCGGACACTGAGGACCACAGACCGCACACAGACAGTCACCAGAAATTTTaGCTCTTCCACTCTCTCTTC | + |
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Preference number: 2 (lower is better) Translates to: SSCVQHFPDTEDHRPHTDSHQKF*LFHSLF Trigger: GAAGAGAGAGTGGAAGAGGCAAAATTTCTGGTGACT...GTCTGTGTGCGGTCTGTGGTCCTCAGTGTCCGGAAAGTGTTGGACACATGAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112978.2 |
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| 3UTR-3UTR GCA 90 bp | CAGGTGCATGGAAGACGCTCAAGACAGGACAGCCACAACCACTTACTCCAAAGTCTCAATGTAAATACTTaGTCCTTGAGTCACCAGAAA | + |
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Preference number: 2 (lower is better) Translates to: QVHGRRSRQDSHNHLLQSLNVNT*SLSHQK Trigger: TTTCTGGTGACTCAAGGAGCAAGTATTTACATTGAG...ACTTTGGAGTAAGTGGTTGTGGCTGTCCTGTCTTGAGCGTCTTCCATGCACCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112978.2 |
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| 3UTR-3UTR CCA 90 bp | AAACAGGTCAGGATTTGGTTTGACTGCACAGAGGAAAGCTCCCTAGAACAACCTCCAGTTTTTCAACCCTaGAAAGTGGGTAGAAAGCAT | + |
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Preference number: 2 (lower is better) Translates to: KQVRIWFDCTEESSLEQPPVFQP*KVGRKH Trigger: ATGCTTTCTACCCACTTTCCAGGGTTGAAAAACTGG...AGGTTGTTCTAGGGAGCTTTCCTCTGTGCAGTCAAACCAAATCCTGACCTGTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033805.15 ENSMUST00000112978.2 |
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| 3UTR-3UTR TCA 90 bp | ATGGAAGACGCTCAAGACAGGACAGCCACAACCACTTACTCCAAAGTAATCAAGATCAAGTTACGAAGGTaGGGAAACATCTTCATGTGT | + |
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Preference number: 2 (lower is better) Translates to: MEDAQDRTATTTYSKVIKIKLRR*GNIFMC Trigger: ACACATGAAGATGTTTCCTCACCTTCGTAACTTGAT...CTTGATTACTTTGGAGTAAGTGGTTGTGGCTGTCCTGTCTTGAGCGTCTTCCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033805.15 ENSMUST00000112978.2 |
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| 3UTR CCA 72 bp | GAACTTGTTCCGGTCCACGGTGGGTCAGCAGGTGCATaGAAGACGCTCAAGACAGGACAGCCACAACCACTT | + |
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Preference number: 3 (lower is better) Translates to: ELVPVHGGSAGA*KTLKTGQPQPL Trigger: AAGTGGTTGTGGCTGTCCTGTCTTGAGCGTCTTCCATGCACCTGCTGACCCACCGTGGACCGGAACAAGTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033805.15 ENSMUST00000112978.2 |
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| 3UTR-3UTR CAA 90 bp | ACGGTGGGTCAGCAGGTGCATGGAAGACGCTCAAGACAGGACAGCCACAACCACCTTTCTGCTAGTCTCTaGAGTATTAAACCCAGGCCC | + |
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Preference number: 3 (lower is better) Translates to: TVGQQVHGRRSRQDSHNHLSASL*SIKPRP Trigger: GGGCCTGGGTTTAATACTCAAGAGACTAGCAGAAAG...GTGGTTGTGGCTGTCCTGTCTTGAGCGTCTTCCATGCACCTGCTGACCCACCGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112978.2 |
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| 3UTR-3UTR CAA 90 bp | AGACCGCACACAGACTACATAGAAGCCTCTTCACTTTCTGCTAGTCTCTTGAGTAAACCCAGGCCCCCTTaGGCCACTTGCAGGGGTGTC | + |
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Preference number: 3 (lower is better) Translates to: RPHTDYIEASSLSASLLSKPRPP*ATCRGV Trigger: GACACCCCTGCAAGTGGCCAAAGGGGGCCTGGGTTT...ACTCAAGAGACTAGCAGAAAGTGAAGAGGCTTCTATGTAGTCTGTGTGCGGTCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112978.2 |
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| 3UTR TCA 72 bp | GGAAACATCTTCATGTGTCCAACACTTTCCGGACACTaGGGACCACAGACCGCACACAGACTACATAGAAGC | + |
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Preference number: 3 (lower is better) Translates to: GNIFMCPTLSGH*GPQTAHRLHRS Trigger: GCTTCTATGTAGTCTGTGTGCGGTCTGTGGTCCTCAGTGTCCGGAAAGTGTTGGACACATGAAGATGTTTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112978.2 |
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| 3UTR-3UTR CAA 90 bp | CAACCCTGGAAAGTGGGTAGAAAGCATAGACCCGGTACTTCAGTAGGAGCAACAGTAAATACTTGCTCCTaGAGTCACCAGAAATTTTGC | + |
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Preference number: 3 (lower is better) Translates to: QPWKVGRKHRPGTSVGATVNTCS*SHQKFC Trigger: GCAAAATTTCTGGTGACTCAAGGAGCAAGTATTTAC...TGTTGCTCCTACTGAAGTACCGGGTCTATGCTTTCTACCCACTTTCCAGGGTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112978.2 |
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| CDS-3UTR CCA 90 bp | ACGGTGGGTCAGCAGGTGCATGGAAGACGCTCAAGACAGGACAGCCACAACCACAACCCAGGCCCCCTTTaGCCACTTGCAGGGGTGTCT | + |
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Preference number: 4 (lower is better) Translates to: TVGQQVHGRRSRQDSHNHNPGPL*PLAGVS Trigger: AGACACCCCTGCAAGTGGCCAAAGGGGGCCTGGGTT...GTGGTTGTGGCTGTCCTGTCTTGAGCGTCTTCCATGCACCTGCTGACCCACCGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033805.15 |
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| CDS-3UTR TCA 90 bp | CAACCCTGGAAAGTGGGTAGAAAGCATAGACCCGGTACTTCAGTAGGAGCAACATTTCTGCTAGTCTCTTaGGTATTAAACCCAGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: QPWKVGRKHRPGTSVGATFLLVS*VLNPGP Trigger: GGGGCCTGGGTTTAATACTCAAGAGACTAGCAGAAA...TGTTGCTCCTACTGAAGTACCGGGTCTATGCTTTCTACCCACTTTCCAGGGTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033805.15 |
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| CDS-3UTR GCA 90 bp | CAGGTGCATGGAAGACGCTCAAGACAGGACAGCCACAACCACTTACTCCAAAGTATAACAGCAATCTCATaGCTATTCTTCGAAGCTGCA | + |
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Preference number: 4 (lower is better) Translates to: QVHGRRSRQDSHNHLLQSITAIS*LFFEAA Trigger: TGCAGCTTCGAAGAATAGGCATGAGATTGCTGTTAT...ACTTTGGAGTAAGTGGTTGTGGCTGTCCTGTCTTGAGCGTCTTCCATGCACCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033805.15 ENSMUST00000112978.2 |
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| CDS-3UTR GCA 90 bp | CAACCCTGGAAAGTGGGTAGAAAGCATAGACCCGGTACTTCAGTAGGAGCAACAAGTCACCAGAAATTTTaGCTCTTCCACTCTCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: QPWKVGRKHRPGTSVGATSHQKF*LFHSLF Trigger: GAAGAGAGAGTGGAAGAGGCAAAATTTCTGGTGACT...TGTTGCTCCTACTGAAGTACCGGGTCTATGCTTTCTACCCACTTTCCAGGGTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033805.15 |
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| CDS-3UTR GCA 90 bp | CAACCCTGGAAAGTGGGTAGAAAGCATAGACCCGGTACTTCAGTAGGAGCAACAATAACAGCAATCTCATaGCTATTCTTCGAAGCTGCA | + |
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Preference number: 4 (lower is better) Translates to: QPWKVGRKHRPGTSVGATITAIS*LFFEAA Trigger: TGCAGCTTCGAAGAATAGGCATGAGATTGCTGTTAT...TGTTGCTCCTACTGAAGTACCGGGTCTATGCTTTCTACCCACTTTCCAGGGTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033805.15 ENSMUST00000112978.2 |
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| CDS-3UTR GCA 90 bp | AGCAGGTGCATGGAAGACGCTCAAGACAGGACAGCCACAACCACTTACTCCAAACTCAATGTAAATACTTaGTCCTTGAGTCACCAGAAA | + |
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Preference number: 4 (lower is better) Translates to: SRCMEDAQDRTATTTYSKLNVNT*SLSHQK Trigger: TTTCTGGTGACTCAAGGAGCAAGTATTTACATTGAG...TTTGGAGTAAGTGGTTGTGGCTGTCCTGTCTTGAGCGTCTTCCATGCACCTGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033805.15 |
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| CDS-3UTR CAA 90 bp | AGCAGGTGCATGGAAGACGCTCAAGACAGGACAGCCACAACCACTTACTCCAAAAAACCCAGGCCCCCTTaGGCCACTTGCAGGGGTGTC | + |
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Preference number: 5 (lower is better) Translates to: SRCMEDAQDRTATTTYSKKPRPP*ATCRGV Trigger: GACACCCCTGCAAGTGGCCAAAGGGGGCCTGGGTTT...TTTGGAGTAAGTGGTTGTGGCTGTCCTGTCTTGAGCGTCTTCCATGCACCTGCT 57% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000033805.15 |
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| CDS-3UTR CAA 90 bp | CAGGTGCATGGAAGACGCTCAAGACAGGACAGCCACAACCACTTACTCCAAAGTCTTTCTGCTAGTCTCTaGAGTATTAAACCCAGGCCC | + |
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Preference number: 5 (lower is better) Translates to: QVHGRRSRQDSHNHLLQSLSASL*SIKPRP Trigger: GGGCCTGGGTTTAATACTCAAGAGACTAGCAGAAAG...ACTTTGGAGTAAGTGGTTGTGGCTGTCCTGTCTTGAGCGTCTTCCATGCACCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033805.15 |
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