Pregenerated sensors for PSMC6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021832Ensembl transcript IDs: ENSMUST00000022380.9
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | TATGTAAAATTACATGTCCATGAACAGACTTTTCCTGGATCCAGACCACAAAAAAACCAATGTCTGTCATaGAGCCACCAAACCCTTCTA | + |
|
Preference number: 2 (lower is better) Translates to: YVKLHVHEQTFPGSRPQKNQCLS*SHQTLL Trigger: TAGAAGGGTTTGGTGGCTGCATGACAGACATTGGTT...TTTTTGTGGTCTGGATCCAGGAAAAGTCTGTTCATGGACATGTAATTTTACATA 39% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000022380.9 |
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| 3UTR-3UTR TCA 90 bp | TATGTAAAATTACATGTCCATGAACAGACTTTTCCTGGATCCAGACCACAAAAACTCACAAAGCAAATATaGAAAGCTTCAGGATGTCTT | + |
|
Preference number: 2 (lower is better) Translates to: YVKLHVHEQTFPGSRPQKLTKQI*KASGCL Trigger: AAGACATCCTGAAGCTTTTCATATTTGCTTTGTGAG...TTTTTGTGGTCTGGATCCAGGAAAAGTCTGTTCATGGACATGTAATTTTACATA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022380.9 |
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| 3UTR-3UTR CAA 90 bp | TATGTAAAATTACATGTCCATGAACAGACTTTTCCTGGATCCAGACCACAAAAAGGTAAAGAGAATTTCTaGGAAGACACAAGTACATGT | + |
|
Preference number: 3 (lower is better) Translates to: YVKLHVHEQTFPGSRPQKGKENF*EDTSTC Trigger: ACATGTACTTGTGTCTTCCAAGAAATTCTCTTTACC...TTTTTGTGGTCTGGATCCAGGAAAAGTCTGTTCATGGACATGTAATTTTACATA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022380.9 |
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| CDS-3UTR CCA 90 bp | TATGTAAAATTACATGTCCATGAACAGACTTTTCCTGGATCCAGACCACAAAAAACCTACAACGTATCTTaGTCCATTTGTTGCTTTAAC | + |
|
Preference number: 4 (lower is better) Translates to: YVKLHVHEQTFPGSRPQKTYNVS*SICCFN Trigger: GTTAAAGCAACAAATGGACCAAGATACGTTGTAGGT...TTTTTGTGGTCTGGATCCAGGAAAAGTCTGTTCATGGACATGTAATTTTACATA 36% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000022380.9 |
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| CDS-3UTR CAA 90 bp | TATGTAAAATTACATGTCCATGAACAGACTTTTCCTGGATCCAGACCACAAAAACGGCCGTCAATCTCCTaGTGCTCTAGCAGCTTCTTG | + |
|
Preference number: 5 (lower is better) Translates to: YVKLHVHEQTFPGSRPQKRPSIS*CSSSFL Trigger: CAAGAAGCTGCTAGAGCACAAGGAGATTGACGGCCG...TTTTTGTGGTCTGGATCCAGGAAAAGTCTGTTCATGGACATGTAATTTTACATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022380.9 |
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