Pregenerated sensors for PSMC3IP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019303Ensembl transcript IDs: ENSMUST00000019447.15, ENSMUST00000142545.2
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCTCCATGTGTCGGCAGCTCTGCTGTAAGCTCTGCACCTTGGCAGTaGGGGCCACGATACTGGCATCCAGGCCGTGGAGGTCCGCATCAC | + |
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Preference number: 1 (lower is better) Translates to: PPCVGSSAVSSAPWQ*GPRYWHPGRGGPHH Trigger: GTGATGCGGACCTCCACGGCCTGGATGCCAGTATCGTGGCCCTCACTGCCAAGGTGCAGAGCTTACAGCAGAGCTGCCGACACATGGAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142545.2 |
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| 3UTR GCA 90 bp | TCCTTCAGCTCGGCCTCCATGTGTCGGCAGCTCTGCTGTAAGCTCTaGACCTTGGCAGTGAGGGCCACGATACTGGCATCCAGGCCGTGG | + |
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Preference number: 1 (lower is better) Translates to: SFSSASMCRQLCCKL*TLAVRATILASRPW Trigger: CCACGGCCTGGATGCCAGTATCGTGGCCCTCACTGCCAAGGTGCAGAGCTTACAGCAGAGCTGCCGACACATGGAGGCCGAGCTGAAGGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142545.2 |
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| 3UTR GCA 90 bp | GCACTTGTTAATTCCTTCAGCTCGGCCTCCATGTGTCGGCAGCTCTaGTGTAAGCTCTGCACCTTGGCAGTGAGGGCCACGATACTGGCA | + |
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Preference number: 1 (lower is better) Translates to: ALVNSFSSASMCRQL*CKLCTLAVRATILA Trigger: TGCCAGTATCGTGGCCCTCACTGCCAAGGTGCAGAGCTTACAGCAGAGCTGCCGACACATGGAGGCCGAGCTGAAGGAATTAACAAGTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142545.2 |
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| 3UTR CCA 90 bp | GGGGTAGGCCAGGGCGATCCCTTGGGAGTCTCAAATGTTGGTGTATaGCACCCTTTCTGTACTCTTATCCCATGTTTCCTACTGCCTTCC | + |
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Preference number: 1 (lower is better) Translates to: GVGQGDPLGVSNVGV*HPFCTLIPCFLLPS Trigger: GGAAGGCAGTAGGAAACATGGGATAAGAGTACAGAAAGGGTGCCATACACCAACATTTGAGACTCCCAAGGGATCGCCCTGGCCTACCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019447.15 |
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| 3UTR CCA 90 bp | ATAATGTGTGTATCTGCCCCACCAGTGTGTTGTCTCCATTTCTCCTaGGGCCTGGGGATAGAGTTAGGTGGGACAGGAGATCCTCAAGTC | + |
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Preference number: 1 (lower is better) Translates to: IMCVSAPPVCCLHFS*GLGIELGGTGDPQV Trigger: GACTTGAGGATCTCCTGTCCCACCTAACTCTATCCCCAGGCCCCAGGAGAAATGGAGACAACACACTGGTGGGGCAGATACACACATTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019447.15 |
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| 3UTR CCA 90 bp | CTCTATCTAACACTATGGCTTTGTGCTCCGTCCACTGCTCAAAGGTaGAGAACAGCAAGAATAAAAAGGCCACTAAGTAAGGTGGCCAGC | + |
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Preference number: 1 (lower is better) Translates to: LYLTLWLCAPSTAQR*RTARIKRPLSKVAS Trigger: GCTGGCCACCTTACTTAGTGGCCTTTTTATTCTTGCTGTTCTCCACCTTTGAGCAGTGGACGGAGCACAAAGCCATAGTGTTAGATAGAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019447.15 |
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| 3UTR GCA 90 bp | TCTGTACACCTTCTCCTTCTCTTCTGGAGTGACATGGTTGGTAGCTaGTTTGATGTTCTTCAGTCTCTCTGTGTATTGAGCACACTCCTT | + |
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Preference number: 1 (lower is better) Translates to: SVHLLLLFWSDMVGS*FDVLQSLCVLSTLL Trigger: AAGGAGTGTGCTCAATACACAGAGAGACTGAAGAACATCAAAGCAGCTACCAACCATGTCACTCCAGAAGAGAAGGAGAAGGTGTACAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142545.2 |
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| 3UTR GCA 90 bp | TATTTGAATTTATCTTCTAAATACCCACAGTGCATTTTTGTTATATaGAGTTTCCCAAACTTCTTAGCAGACCTCCAAAGCAGCCCCAGC | + |
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Preference number: 1 (lower is better) Translates to: YLNLSSKYPQCIFVI*SFPNFLADLQSSPS Trigger: GCTGGGGCTGCTTTGGAGGTCTGCTAAGAAGTTTGGGAAACTGCATATAACAAAAATGCACTGTGGGTATTTAGAAGATAAATTCAAATA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019447.15 |
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| 3UTR CAA 90 bp | AGCTCGGCCTCCATGTGTCGGCAGCTCTGCTGTAAGCTCTGCACCTaGGCAGTGAGGGCCACGATACTGGCATCCAGGCCGTGGAGGTCC | + |
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Preference number: 2 (lower is better) Translates to: SSASMCRQLCCKLCT*AVRATILASRPWRS Trigger: GGACCTCCACGGCCTGGATGCCAGTATCGTGGCCCTCACTGCCAAGGTGCAGAGCTTACAGCAGAGCTGCCGACACATGGAGGCCGAGCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142545.2 |
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| 3UTR-3UTR GCA 90 bp | CTTGCTCTTGGGGTAGCCTTCAAGGATCGCATCACACAGCTCTGTGGTCATCCTATGTGTCGGCAGCTCTaGTGTAAGCTCTGCACCTTG | + |
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Preference number: 2 (lower is better) Translates to: LALGVAFKDRITQLCGHPMCRQL*CKLCTL Trigger: CAAGGTGCAGAGCTTACAGCAGAGCTGCCGACACAT...AGGATGACCACAGAGCTGTGTGATGCGATCCTTGAAGGCTACCCCAAGAGCAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142545.2 |
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| 3UTR CAA 90 bp | TTAACTCCTGAATCTCTTTCTGCATCTCAGGAGTGGTCAGCGCACTaGTTAATTCCTTCAGCTCGGCCTCCATGTGTCGGCAGCTCTGCT | + |
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Preference number: 2 (lower is better) Translates to: LTPESLSASQEWSAH*LIPSARPPCVGSSA Trigger: AGCAGAGCTGCCGACACATGGAGGCCGAGCTGAAGGAATTAACAAGTGCGCTGACCACTCCTGAGATGCAGAAAGAGATTCAGGAGTTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142545.2 |
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| 3UTR-3UTR CCA 90 bp | GCTCTGTGGTCATCCTCTTCCGCTTCCTCCACTCTTTACAGTACTTCTGTCTGTCTTCTCCTTCTCTTCTaGAGTGACATGGTTGGTAGC | + |
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Preference number: 2 (lower is better) Translates to: ALWSSSSASSTLYSTSVCLLLLF*SDMVGS Trigger: GCTACCAACCATGTCACTCCAGAAGAGAAGGAGAAG...ACAGACAGAAGTACTGTAAAGAGTGGAGGAAGCGGAAGAGGATGACCACAGAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142545.2 |
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| 3UTR-3UTR GCA 90 bp | TGTTCTTCAGTCTCTCTGTGTATTGAGCACACTCCTTCTTTAACTCCTGAATCTCTCTGCTGTAAGCTCTaGACCTTGGCAGTGAGGGCC | + |
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Preference number: 2 (lower is better) Translates to: CSSVSLCIEHTPSLTPESLCCKL*TLAVRA Trigger: GGCCCTCACTGCCAAGGTGCAGAGCTTACAGCAGAG...AGATTCAGGAGTTAAAGAAGGAGTGTGCTCAATACACAGAGAGACTGAAGAACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142545.2 |
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| 3UTR-3UTR CCA 90 bp | CAGCTCTGTGGTCATCCTCTTCCGCTTCCTCCACTCTTTACAGTACTTCTGTCTTCTTCTGGAGTGACATaGTTGGTAGCTGCTTTGATG | + |
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Preference number: 2 (lower is better) Translates to: QLCGHPLPLPPLFTVLLSSSGVT*LVAALM Trigger: CATCAAAGCAGCTACCAACCATGTCACTCCAGAAGA...AGACAGAAGTACTGTAAAGAGTGGAGGAAGCGGAAGAGGATGACCACAGAGCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142545.2 |
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| 3UTR-3UTR CCA 90 bp | CAGGGCGATCCCTTGGGAGTCTCAAATGTTGGTGTATGGCACCCTTTCTGTACTTCCACTGCTCAAAGGTaGAGAACAGCAAGAATAAAA | + |
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Preference number: 2 (lower is better) Translates to: QGDPLGVSNVGVWHPFCTSTAQR*RTARIK Trigger: TTTTATTCTTGCTGTTCTCCACCTTTGAGCAGTGGA...AGTACAGAAAGGGTGCCATACACCAACATTTGAGACTCCCAAGGGATCGCCCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019447.15 |
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| 3UTR GCA 72 bp | TCGGCCTCCATGTGTCGGCAGCTCTGCTGTAAGCTCTaGACCTTGGCAGTGAGGGCCACGATACTGGCATCC | + |
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Preference number: 3 (lower is better) Translates to: SASMCRQLCCKL*TLAVRATILAS Trigger: GGATGCCAGTATCGTGGCCCTCACTGCCAAGGTGCAGAGCTTACAGCAGAGCTGCCGACACATGGAGGCCGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142545.2 |
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| 3UTR GCA 72 bp | AATTCCTTCAGCTCGGCCTCCATGTGTCGGCAGCTCTaGTGTAAGCTCTGCACCTTGGCAGTGAGGGCCACG | + |
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Preference number: 3 (lower is better) Translates to: NSFSSASMCRQL*CKLCTLAVRAT Trigger: CGTGGCCCTCACTGCCAAGGTGCAGAGCTTACAGCAGAGCTGCCGACACATGGAGGCCGAGCTGAAGGAATT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142545.2 |
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| 3UTR GCA 72 bp | AAGCAGCCCCAGCCTCTTCTGCATAATGTGTGTATCTaGCCCACCAGTGTGTTGTCTCCATTTCTCCTGGGG | + |
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Preference number: 3 (lower is better) Translates to: KQPQPLLHNVCI*PTSVLSPFLLG Trigger: CCCCAGGAGAAATGGAGACAACACACTGGTGGGGCAGATACACACATTATGCAGAAGAGGCTGGGGCTGCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019447.15 |
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| 3UTR CCA 72 bp | GGTAGGCCAGGGCGATCCCTTGGGAGTCTCAAATGTTaGTGTATGGCACCCTTTCTGTACTCTTATCCCATG | + |
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Preference number: 3 (lower is better) Translates to: GRPGRSLGSLKC*CMAPFLYSYPM Trigger: CATGGGATAAGAGTACAGAAAGGGTGCCATACACCAACATTTGAGACTCCCAAGGGATCGCCCTGGCCTACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019447.15 |
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| 3UTR-3UTR CAA 90 bp | GCTCTGTGGTCATCCTCTTCCGCTTCCTCCACTCTTTACAGTACTTCTGTCTGTTGTAAGCTCTGCACCTaGGCAGTGAGGGCCACGATA | + |
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Preference number: 3 (lower is better) Translates to: ALWSSSSASSTLYSTSVCCKLCT*AVRATI Trigger: TATCGTGGCCCTCACTGCCAAGGTGCAGAGCTTACA...ACAGACAGAAGTACTGTAAAGAGTGGAGGAAGCGGAAGAGGATGACCACAGAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142545.2 |
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| 3UTR-3UTR CAA 90 bp | CTCCTGGGGCCTGGGGATAGAGTTAGGTGGGACAGGAGATCCTCAAGTCTTCTGTGTTTTAAGTCCTTGTaGAGGCCTGTACAAAACGGA | + |
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Preference number: 3 (lower is better) Translates to: LLGPGDRVRWDRRSSSLLCFKSL*RPVQNG Trigger: TCCGTTTTGTACAGGCCTCAACAAGGACTTAAAACA...CAGAAGACTTGAGGATCTCCTGTCCCACCTAACTCTATCCCCAGGCCCCAGGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000019447.15 |
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| 3UTR CCA 72 bp | CCGTCCTTTCTGATCACCAGCCTCTATCTAACACTATaGCTTTGTGCTCCGTCCACTGCTCAAAGGTGGAGA | + |
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Preference number: 3 (lower is better) Translates to: PSFLITSLYLTL*LCAPSTAQRWR Trigger: TCTCCACCTTTGAGCAGTGGACGGAGCACAAAGCCATAGTGTTAGATAGAGGCTGGTGATCAGAAAGGACGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019447.15 |
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| 3UTR CCA 72 bp | CAGGGCGATCCCTTGGGAGTCTCAAATGTTGGTGTATaGCACCCTTTCTGTACTCTTATCCCATGTTTCCTA | + |
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Preference number: 3 (lower is better) Translates to: QGDPLGVSNVGV*HPFCTLIPCFL Trigger: TAGGAAACATGGGATAAGAGTACAGAAAGGGTGCCATACACCAACATTTGAGACTCCCAAGGGATCGCCCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019447.15 |
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| 3UTR GCA 72 bp | CCTCTATCTAACACTATGGCTTTGTGCTCCGTCCACTaGTCAAAGGTGGAGAACAGCAAGAATAAAAAGGCC | + |
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Preference number: 3 (lower is better) Translates to: PLSNTMALCSVH*SKVENSKNKKA Trigger: GGCCTTTTTATTCTTGCTGTTCTCCACCTTTGAGCAGTGGACGGAGCACAAAGCCATAGTGTTAGATAGAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019447.15 |
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| 3UTR GCA 72 bp | CTTCTCCTTCTCTTCTGGAGTGACATGGTTGGTAGCTaGTTTGATGTTCTTCAGTCTCTCTGTGTATTGAGC | + |
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Preference number: 3 (lower is better) Translates to: LLLLFWSDMVGS*FDVLQSLCVLS Trigger: GCTCAATACACAGAGAGACTGAAGAACATCAAAGCAGCTACCAACCATGTCACTCCAGAAGAGAAGGAGAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142545.2 |
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| 3UTR CCA 72 bp | ACACTATGGCTTTGTGCTCCGTCCACTGCTCAAAGGTaGAGAACAGCAAGAATAAAAAGGCCACTAAGTAAG | + |
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Preference number: 3 (lower is better) Translates to: TLWLCAPSTAQR*RTARIKRPLSK Trigger: CTTACTTAGTGGCCTTTTTATTCTTGCTGTTCTCCACCTTTGAGCAGTGGACGGAGCACAAAGCCATAGTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019447.15 |
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| CDS-3UTR TCA 90 bp | ATCCCTTGGGAGTCTCAAATGTTGGTGTATGGCACCCTTTCTGTACTCTTATCCGCAGGTACCTCAGGATaGTCCCGGGGGCTCCAGCCG | + |
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Preference number: 4 (lower is better) Translates to: IPWESQMLVYGTLSVLLSAGTSG*SRGLQP Trigger: CGGCTGGAGCCCCCGGGATCATCCTGAGGTACCTGC...GGATAAGAGTACAGAAAGGGTGCCATACACCAACATTTGAGACTCCCAAGGGAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019447.15 |
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| CDS-3UTR TCA 90 bp | TCCTTCTCTTCTGGAGTGACATGGTTGGTAGCTGCTTTGATGTTCTTCAGTCTCGCAGGTACCTCAGGATaGTCCCGGGGGCTCCAGCCG | + |
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Preference number: 4 (lower is better) Translates to: SFSSGVTWLVAALMFFSLAGTSG*SRGLQP Trigger: CGGCTGGAGCCCCCGGGATCATCCTGAGGTACCTGC...GAGACTGAAGAACATCAAAGCAGCTACCAACCATGTCACTCCAGAAGAGAAGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000142545.2 |
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| CDS-3UTR GCA 90 bp | CTTCTGGGGGTAGGCCAGGGCGATCCCTTGGGAGTCTCAAATGTTGGTGTATGGGGCCGGTTTTGTTCTTaGAGGTACCTCAGGATGATC | + |
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Preference number: 4 (lower is better) Translates to: LLGVGQGDPLGVSNVGVWGRFCS*RYLRMI Trigger: GATCATCCTGAGGTACCTGCAAGAACAAAACCGGCC...CCATACACCAACATTTGAGACTCCCAAGGGATCGCCCTGGCCTACCCCCAGAAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000019447.15 |
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| 3UTR CAA 72 bp | GAATCTCTTTCTGCATCTCAGGAGTGGTCAGCGCACTaGTTAATTCCTTCAGCTCGGCCTCCATGTGTCGGC | + |
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Preference number: 4 (lower is better) Translates to: ESLSASQEWSAH*LIPSARPPCVG Trigger: GCCGACACATGGAGGCCGAGCTGAAGGAATTAACAAGTGCGCTGACCACTCCTGAGATGCAGAAAGAGATTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142545.2 |
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| CDS-3UTR GCA 90 bp | CTCCTGGGGCCTGGGGATAGAGTTAGGTGGGACAGGAGATCCTCAAGTCTTCTGCAAAGAACTGCTTCTTaGTCTTGGGGTAGCCTTCAA | + |
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Preference number: 4 (lower is better) Translates to: LLGPGDRVRWDRRSSSLLQRTAS*SWGSLQ Trigger: TTGAAGGCTACCCCAAGAGCAAGAAGCAGTTCTTTG...CAGAAGACTTGAGGATCTCCTGTCCCACCTAACTCTATCCCCAGGCCCCAGGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000019447.15 |
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| CDS-3UTR GCA 90 bp | TGGTCATCCTCTTCCGCTTCCTCCACTCTTTACAGTACTTCTGTCTGTCTCTGTTCACTACCGCCGCCTTaGCCAGTCCATGTTCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: WSSSSASSTLYSTSVCLCSLPPP*PVHVPS Trigger: AGAAGGAACATGGACTGGGCAAGGCGGCGGTAGTGA...ACAGAGACAGACAGAAGTACTGTAAAGAGTGGAGGAAGCGGAAGAGGATGACCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142545.2 |
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| CDS-3UTR GCA 90 bp | ATCCCTTGGGAGTCTCAAATGTTGGTGTATGGCACCCTTTCTGTACTCTTATCCCTCTGCTGTAAGCTCTaGACCTTGGCAGTGAGGGCC | + |
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Preference number: 4 (lower is better) Translates to: IPWESQMLVYGTLSVLLSLCCKL*TLAVRA Trigger: GGCCCTCACTGCCAAGGTGCAGAGCTTACAGCAGAG...GGATAAGAGTACAGAAAGGGTGCCATACACCAACATTTGAGACTCCCAAGGGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019447.15 |
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| CDS-3UTR CCA 90 bp | CAGGGCGATCCCTTGGGAGTCTCAAATGTTGGTGTATGGCACCCTTTCTGTACTACTGCTTCTTGCTCTTaGGGTAGCCTTCAAGGATCG | + |
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Preference number: 4 (lower is better) Translates to: QGDPLGVSNVGVWHPFCTTASCS*GSLQGS Trigger: CGATCCTTGAAGGCTACCCCAAGAGCAAGAAGCAGT...AGTACAGAAAGGGTGCCATACACCAACATTTGAGACTCCCAAGGGATCGCCCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019447.15 |
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| CDS-3UTR TCA 90 bp | TGGTCATCCTCTTCCGCTTCCTCCACTCTTTACAGTACTTCTGTCTGTCTCTGTCGTAGGTCTTCTCTTTaGTCTTGCCTTCCTGGGCCA | + |
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Preference number: 4 (lower is better) Translates to: WSSSSASSTLYSTSVCLCRRSSL*SCLPGP Trigger: TGGCCCAGGAAGGCAAGATCAAAGAGAAGACCTACG...ACAGAGACAGACAGAAGTACTGTAAAGAGTGGAGGAAGCGGAAGAGGATGACCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142545.2 |
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| 3UTR CAA 72 bp | CTTTCTGATCACCAGCCTCTATCTAACACTATGGCTTaGTGCTCCGTCCACTGCTCAAAGGTGGAGAACAGC | + |
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Preference number: 4 (lower is better) Translates to: LSDHQPLSNTMA*CSVHCSKVENS Trigger: GCTGTTCTCCACCTTTGAGCAGTGGACGGAGCACAAAGCCATAGTGTTAGATAGAGGCTGGTGATCAGAAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019447.15 |
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| CDS-3UTR TCA 90 bp | ATGGCTTTGTGCTCCGTCCACTGCTCAAAGGTGGAGAACAGCAAGAATAAAAAGCGTAGGTCTTCTCTTTaGTCTTGCCTTCCTGGGCCA | + |
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Preference number: 4 (lower is better) Translates to: MALCSVHCSKVENSKNKKRRSSL*SCLPGP Trigger: TGGCCCAGGAAGGCAAGATCAAAGAGAAGACCTACG...CTTTTTATTCTTGCTGTTCTCCACCTTTGAGCAGTGGACGGAGCACAAAGCCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019447.15 |
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| CDS-3UTR GCA 90 bp | CCTTTCTGTACTCTTATCCCATGTTTCCTACTGCCTTCCCCAGGTTTGATATCTTCACTACCGCCGCCTTaGCCAGTCCATGTTCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: PFCTLIPCFLLPSPGLISSLPPP*PVHVPS Trigger: AGAAGGAACATGGACTGGGCAAGGCGGCGGTAGTGA...AGATATCAAACCTGGGGAAGGCAGTAGGAAACATGGGATAAGAGTACAGAAAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019447.15 |
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| CDS-3UTR GCA 90 bp | ATCCCTTGGGAGTCTCAAATGTTGGTGTATGGCACCCTTTCTGTACTCTTATCCATGTGTCGGCAGCTCTaGTGTAAGCTCTGCACCTTG | + |
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Preference number: 4 (lower is better) Translates to: IPWESQMLVYGTLSVLLSMCRQL*CKLCTL Trigger: CAAGGTGCAGAGCTTACAGCAGAGCTGCCGACACAT...GGATAAGAGTACAGAAAGGGTGCCATACACCAACATTTGAGACTCCCAAGGGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019447.15 |
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| CDS-3UTR CCA 90 bp | GGGCGATCCCTTGGGAGTCTCAAATGTTGGTGTATGGCACCCTTTCTGTACTCTTCTTCTGGAGTGACATaGTTGGTAGCTGCTTTGATG | + |
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Preference number: 4 (lower is better) Translates to: GRSLGSLKCWCMAPFLYSSSGVT*LVAALM Trigger: CATCAAAGCAGCTACCAACCATGTCACTCCAGAAGA...AGAGTACAGAAAGGGTGCCATACACCAACATTTGAGACTCCCAAGGGATCGCCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019447.15 |
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| CDS-3UTR GCA 90 bp | CTTCTCTTCTGGAGTGACATGGTTGGTAGCTGCTTTGATGTTCTTCAGTCTCTCGGCCGGTTTTGTTCTTaGAGGTACCTCAGGATGATC | + |
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Preference number: 4 (lower is better) Translates to: LLFWSDMVGSCFDVLQSLGRFCS*RYLRMI Trigger: GATCATCCTGAGGTACCTGCAAGAACAAAACCGGCC...GAGAGACTGAAGAACATCAAAGCAGCTACCAACCATGTCACTCCAGAAGAGAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142545.2 |
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| CDS-3UTR CCA 90 bp | ATCCCTTGGGAGTCTCAAATGTTGGTGTATGGCACCCTTTCTGTACTCTTATCCCTTCTCCTTCTCTTCTaGAGTGACATGGTTGGTAGC | + |
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Preference number: 4 (lower is better) Translates to: IPWESQMLVYGTLSVLLSLLLLF*SDMVGS Trigger: GCTACCAACCATGTCACTCCAGAAGAGAAGGAGAAG...GGATAAGAGTACAGAAAGGGTGCCATACACCAACATTTGAGACTCCCAAGGGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019447.15 |
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| CDS-3UTR TCA 90 bp | ATCCCTTGGGAGTCTCAAATGTTGGTGTATGGCACCCTTTCTGTACTCTTATCCTCCTTCTTTAACTCCTaGATCTCTTTCTGCATCTCA | + |
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Preference number: 4 (lower is better) Translates to: IPWESQMLVYGTLSVLLSSFFNS*ISFCIS Trigger: TGAGATGCAGAAAGAGATTCAGGAGTTAAAGAAGGA...GGATAAGAGTACAGAAAGGGTGCCATACACCAACATTTGAGACTCCCAAGGGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019447.15 |
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| CDS-3UTR TCA 90 bp | ATCCCTTGGGAGTCTCAAATGTTGGTGTATGGCACCCTTTCTGTACTCTTATCCGGGAGCAAAACATTATaGTCTTCATCTGTCTCTATT | + |
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Preference number: 4 (lower is better) Translates to: IPWESQMLVYGTLSVLLSGSKTL*SSSVSI Trigger: AATAGAGACAGATGAAGATCATAATGTTTTGCTCCC...GGATAAGAGTACAGAAAGGGTGCCATACACCAACATTTGAGACTCCCAAGGGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019447.15 |
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| CDS-3UTR CAA 90 bp | CTGCACCTTGGCAGTGAGGGCCACGATACTGGCATCCAGGCCGTGGAGGTCCGCGCTGTAGGGCCGGTTTaGTTCTTGCAGGTACCTCAG | + |
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Preference number: 5 (lower is better) Translates to: LHLGSEGHDTGIQAVEVRAVGPV*FLQVPQ Trigger: CTGAGGTACCTGCAAGAACAAAACCGGCCCTACAGC...GCGGACCTCCACGGCCTGGATGCCAGTATCGTGGCCCTCACTGCCAAGGTGCAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142545.2 |
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| CDS GCA 90 bp | TGCCTTCCTGGGCCAGCTGATCCAGCGCCTTCACTACCGCCGCCTTaGCCAGTCCATGTTCCTTCTGTAGGTTTCCGAACACGTCCTGGG | + |
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Preference number: 5 (lower is better) Translates to: CLPGPADPAPSLPPP*PVHVPSVGFRTRPG Trigger: CCCAGGACGTGTTCGGAAACCTACAGAAGGAACATGGACTGGGCAAGGCGGCGGTAGTGAAGGCGCTGGATCAGCTGGCCCAGGAAGGCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019447.15 ENSMUST00000142545.2 |
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| CDS-3UTR CAA 90 bp | CTTCTGGGGGTAGGCCAGGGCGATCCCTTGGGAGTCTCAAATGTTGGTGTATGGGCTGTAGGGCCGGTTTaGTTCTTGCAGGTACCTCAG | + |
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Preference number: 5 (lower is better) Translates to: LLGVGQGDPLGVSNVGVWAVGPV*FLQVPQ Trigger: CTGAGGTACCTGCAAGAACAAAACCGGCCCTACAGC...CCATACACCAACATTTGAGACTCCCAAGGGATCGCCCTGGCCTACCCCCAGAAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019447.15 |
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| CDS-3UTR CAA 90 bp | GGGCCTGGGGATAGAGTTAGGTGGGACAGGAGATCCTCAAGTCTTCTGGGGGTAGGGCCGGTTTTGTTCTaGCAGGTACCTCAGGATGAT | + |
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Preference number: 5 (lower is better) Translates to: GPGDRVRWDRRSSSLLGVGPVLF*QVPQDD Trigger: ATCATCCTGAGGTACCTGCAAGAACAAAACCGGCCC...TACCCCCAGAAGACTTGAGGATCTCCTGTCCCACCTAACTCTATCCCCAGGCCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000019447.15 |
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| CDS-3UTR CAA 90 bp | CAGGGCGATCCCTTGGGAGTCTCAAATGTTGGTGTATGGCACCCTTTCTGTACTTGTAAGCTCTGCACCTaGGCAGTGAGGGCCACGATA | + |
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Preference number: 5 (lower is better) Translates to: QGDPLGVSNVGVWHPFCTCKLCT*AVRATI Trigger: TATCGTGGCCCTCACTGCCAAGGTGCAGAGCTTACA...AGTACAGAAAGGGTGCCATACACCAACATTTGAGACTCCCAAGGGATCGCCCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019447.15 |
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| CDS-3UTR CAA 90 bp | TCCTCAAGTCTTCTGGGGGTAGGCCAGGGCGATCCCTTGGGAGTCTCAAATGTTTCTGGAGTGACATGGTaGGTAGCTGCTTTGATGTTC | + |
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Preference number: 5 (lower is better) Translates to: SSSLLGVGQGDPLGVSNVSGVTW*VAALMF Trigger: GAACATCAAAGCAGCTACCAACCATGTCACTCCAGA...AACATTTGAGACTCCCAAGGGATCGCCCTGGCCTACCCCCAGAAGACTTGAGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019447.15 |
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| CDS-3UTR CAA 90 bp | TGGTCATCCTCTTCCGCTTCCTCCACTCTTTACAGTACTTCTGTCTGTCTCTGTGGGCCGGTTTTGTTCTaGCAGGTACCTCAGGATGAT | + |
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Preference number: 5 (lower is better) Translates to: WSSSSASSTLYSTSVCLCGPVLF*QVPQDD Trigger: ATCATCCTGAGGTACCTGCAAGAACAAAACCGGCCC...ACAGAGACAGACAGAAGTACTGTAAAGAGTGGAGGAAGCGGAAGAGGATGACCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142545.2 |
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| CDS-3UTR CAA 90 bp | GGGCGATCCCTTGGGAGTCTCAAATGTTGGTGTATGGCACCCTTTCTGTACTCTTGGTTGGTAGCTGCTTaGATGTTCTTCAGTCTCTCT | + |
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Preference number: 5 (lower is better) Translates to: GRSLGSLKCWCMAPFLYSWLVAA*MFFSLS Trigger: AGAGAGACTGAAGAACATCAAAGCAGCTACCAACCA...AGAGTACAGAAAGGGTGCCATACACCAACATTTGAGACTCCCAAGGGATCGCCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019447.15 |
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| CDS TCA 72 bp | TGTAGGGCCGGTTTTGTTCTTGCAGGTACCTCAGGATaGTCCCGGGGGCTCCAGCCGCAGCCTCGGCCCGGC | + |
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Preference number: 6 (lower is better) Translates to: CRAGFVLAGTSG*SRGLQPQPRPG Trigger: GCCGGGCCGAGGCTGCGGCTGGAGCCCCCGGGATCATCCTGAGGTACCTGCAAGAACAAAACCGGCCCTACA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000019447.15 ENSMUST00000142545.2 |
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| CDS CAA 72 bp | GAACACGTCCTGGGCGCTGTAGGGCCGGTTTTGTTCTaGCAGGTACCTCAGGATGATCCCGGGGGCTCCAGC | + |
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Preference number: 6 (lower is better) Translates to: EHVLGAVGPVLF*QVPQDDPGGSS Trigger: GCTGGAGCCCCCGGGATCATCCTGAGGTACCTGCAAGAACAAAACCGGCCCTACAGCGCCCAGGACGTGTTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000019447.15 ENSMUST00000142545.2 |
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| CDS CAA 72 bp | GTTTCCGAACACGTCCTGGGCGCTGTAGGGCCGGTTTaGTTCTTGCAGGTACCTCAGGATGATCCCGGGGGC | + |
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Preference number: 6 (lower is better) Translates to: VSEHVLGAVGPV*FLQVPQDDPGG Trigger: GCCCCCGGGATCATCCTGAGGTACCTGCAAGAACAAAACCGGCCCTACAGCGCCCAGGACGTGTTCGGAAAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019447.15 ENSMUST00000142545.2 |
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| CDS GCA 72 bp | GGGCCAGCTGATCCAGCGCCTTCACTACCGCCGCCTTaGCCAGTCCATGTTCCTTCTGTAGGTTTCCGAACA | + |
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Preference number: 6 (lower is better) Translates to: GPADPAPSLPPP*PVHVPSVGFRT Trigger: TGTTCGGAAACCTACAGAAGGAACATGGACTGGGCAAGGCGGCGGTAGTGAAGGCGCTGGATCAGCTGGCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019447.15 ENSMUST00000142545.2 |
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| CDS CCA 72 bp | TTGGCAGTGAGGGCCACGATACTGGCATCCAGGCCGTaGAGGTCCGCATCACTCACTGTGTCAAACTGGTTC | + |
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Preference number: 6 (lower is better) Translates to: LAVRATILASRP*RSASLTVSNWF Trigger: GAACCAGTTTGACACAGTGAGTGATGCGGACCTCCACGGCCTGGATGCCAGTATCGTGGCCCTCACTGCCAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019447.15 |
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| CDS CCA 72 bp | CTATTCCAACTTCCTCAAAGAACTGCTTCTTGCTCTTaGGGTAGCCTTCAAGGATCGCATCACACAGCTCTG | + |
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Preference number: 6 (lower is better) Translates to: LFQLPQRTASCS*GSLQGSHHTAL Trigger: CAGAGCTGTGTGATGCGATCCTTGAAGGCTACCCCAAGAGCAAGAAGCAGTTCTTTGAGGAAGTTGGAATAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019447.15 |
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