Pregenerated sensors for PSMC3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000002102Ensembl transcript IDs: ENSMUST00000002171.14, ENSMUST00000067663.14, ENSMUST00000111441.10, ENSMUST00000146506.2, ENSMUST00000185715.7
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CTTCAAGAAGGTGGCCTTGGTCTGAGCAGCACAGGCTCGGGCAAGCAGAGTCTTCATCAGCACTCCTTTTaGGGGCTGGATACCCAAGTT | + |
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Preference number: 2 (lower is better) Translates to: LQEGGLGLSSTGSGKQSLHQHSF*GLDTQV Trigger: AACTTGGGTATCCAGCCCCCAAAAGGAGTGCTGATG...AAGACTCTGCTTGCCCGAGCCTGTGCTGCTCAGACCAAGGCCACCTTCTTGAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000146506.2 |
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| 3UTR-3UTR GCA 90 bp | AGTTTTTATTTTGTGGTTGCCATCAGATGGATTAGAGATCCAGAACTTGCCAGGGCTGCCTCATGTCTCTaGTTTGCAGCCGGAGCCTGG | + |
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Preference number: 2 (lower is better) Translates to: SFYFVVAIRWIRDPELARAASCL*FAAGAW Trigger: CCAGGCTCCGGCTGCAAAGCAGAGACATGAGGCAGC...CCTGGCAAGTTCTGGATCTCTAATCCATCTGATGGCAACCACAAAATAAAAACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| 3UTR-3UTR CCA 90 bp | AGTCTCAGAAGTTTTTATTTTGTGGTTGCCATCAGATGGATTAGAGATCCAGAAAGAAAGCCAGTGAGATaGGCGAGCTTAGTAGCAGAG | + |
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Preference number: 2 (lower is better) Translates to: SLRSFYFVVAIRWIRDPERKPVR*ASLVAE Trigger: CTCTGCTACTAAGCTCGCCCATCTCACTGGCTTTCT...TTCTGGATCTCTAATCCATCTGATGGCAACCACAAAATAAAAACTTCTGAGACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| 3UTR CCA 72 bp | TCTGTACCAGCTGAGGGCCTGCCAGCTTCAAGAAGGTaGCCTTGGTCTGAGCAGCACAGGCTCGGGCAAGCA | + |
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Preference number: 3 (lower is better) Translates to: SVPAEGLPASRR*PWSEQHRLGQA Trigger: TGCTTGCCCGAGCCTGTGCTGCTCAGACCAAGGCCACCTTCTTGAAGCTGGCAGGCCCTCAGCTGGTACAGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146506.2 |
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| 3UTR-3UTR CAA 90 bp | CCAGCTTCAAGAAGGTGGCCTTGGTCTGAGCAGCACAGGCTCGGGCAAGCAGAGACATCAGCACTCCTTTaGGGGGCTGGATACCCAAGT | + |
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Preference number: 3 (lower is better) Translates to: PASRRWPWSEQHRLGQAETSALL*GAGYPS Trigger: ACTTGGGTATCCAGCCCCCAAAAGGAGTGCTGATGT...CTCTGCTTGCCCGAGCCTGTGCTGCTCAGACCAAGGCCACCTTCTTGAAGCTGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146506.2 |
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| 3UTR TCA 72 bp | GTCCACAATGATCCCACAGTCCACGGGAGATCTTCCTaGGAACAGCCGCCCAAACCTAGCCTTTGGAAGCTT | + |
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Preference number: 3 (lower is better) Translates to: VHNDPTVHGRSS*EQPPKPSLWKL Trigger: AAGCTTCCAAAGGCTAGGTTTGGGCGGCTGTTCTCAGGAAGATCTCCCGTGGACTGTGGGATCATTGTGGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| 3UTR CCA 72 bp | AGTCTCAGAAGTTTTTATTTTGTGGTTGCCATCAGATaGATTAGAGATCCAGAACTTGCCAGGGTCCAAGCC | + |
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Preference number: 3 (lower is better) Translates to: SLRSFYFVVAIR*IRDPELARVQA Trigger: GGCTTGGACCCTGGCAAGTTCTGGATCTCTAATCCATCTGATGGCAACCACAAAATAAAAACTTCTGAGACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS-3UTR GCA 90 bp | GTAGCAGAGGCTCAGCGCTGCCTCATGTCTCTGCTTTGCAGCCGGAGCCTGGCGGTCGCCATCTTCTCCTaGCGAGTCACTGGACTCTCG | + |
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Preference number: 4 (lower is better) Translates to: VAEAQRCLMSLLCSRSLAVAIFS*RVTGLS Trigger: CGAGAGTCCAGTGACTCGGCAGGAGAAGATGGCGAC...CGCCAGGCTCCGGCTGCAAAGCAGAGACATGAGGCAGCGCTGAGCCTCTGCTAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS-3UTR GCA 90 bp | GAGGCTCAGCGCTGCCTCATGTCTCTGCTTTGCAGCCGGAGCCTGGCGACTGAGTACCAGCTGAGGGCCTaGCAGCTTCAAGAAGGTGGC | + |
|
Preference number: 4 (lower is better) Translates to: EAQRCLMSLLCSRSLATEYQLRA*QLQEGG Trigger: GCCACCTTCTTGAAGCTGGCAGGCCCTCAGCTGGTA...CTCAGTCGCCAGGCTCCGGCTGCAAAGCAGAGACATGAGGCAGCGCTGAGCCTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS-3UTR GCA 90 bp | AGCTTAGTAGCAGAGGCTCAGCGCTGCCTCATGTCTCTGCTTTGCAGCCGGAGCACCAGCTCCTGGATCTaGTTGTCCAGGCCCCCGATG | + |
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Preference number: 4 (lower is better) Translates to: SLVAEAQRCLMSLLCSRSTSSWI*LSRPPM Trigger: CATCGGGGGCCTGGACAAGCAGATCCAGGAGCTGGT...GCTCCGGCTGCAAAGCAGAGACATGAGGCAGCGCTGAGCCTCTGCTACTAAGCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS-3UTR GCA 90 bp | GAAGGTGGCCTTGGTCTGAGCAGCACAGGCTCGGGCAAGCAGAGTCTTCCCTGTAAGTCCTCCTGGATCTaGTTGTCCAGGCCCCCGATG | + |
|
Preference number: 4 (lower is better) Translates to: EGGLGLSSTGSGKQSLPCKSSWI*LSRPPM Trigger: CATCGGGGGCCTGGACAAGCAGATCCAGGAGGACTT...ACAGGGAAGACTCTGCTTGCCCGAGCCTGTGCTGCTCAGACCAAGGCCACCTTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146506.2 |
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| CDS-3UTR CCA 90 bp | CTCAGCGCTGCCTCATGTCTCTGCTTTGCAGCCGGAGCCTGGCGACTGAGGCAGATGGTGCCTTCTCCTTaGCCAGGGCAAAAGCATCAC | + |
|
Preference number: 4 (lower is better) Translates to: LSAASCLCFAAGAWRLRQMVPSP*PGQKHH Trigger: GTGATGCTTTTGCCCTGGCCAAGGAGAAGGCACCAT...CTGCCTCAGTCGCCAGGCTCCGGCTGCAAAGCAGAGACATGAGGCAGCGCTGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS-3UTR GCA 90 bp | GGTGGCCTTGGTCTGAGCAGCACAGGCTCGGGCAAGCAGAGTCTTCCCTGTTCCGCACCTCCTCCCCAATaGCATCTTGCTCAGCTTCAT | + |
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Preference number: 4 (lower is better) Translates to: GGLGLSSTGSGKQSLPCSAPPPQ*HLAQLH Trigger: ATGAAGCTGAGCAAGATGGCATTGGGGAGGAGGTGC...GGAACAGGGAAGACTCTGCTTGCCCGAGCCTGTGCTGCTCAGACCAAGGCCACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146506.2 |
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| CDS-3UTR CCA 90 bp | AGAAGGTGGCCTTGGTCTGAGCAGCACAGGCTCGGGCAAGCAGAGTCTTCCCTGCCTCCTCCTGGTCATTaGGGTCAACGTCCAGCAACT | + |
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Preference number: 4 (lower is better) Translates to: RRWPWSEQHRLGQAESSLPPPGH*GQRPAT Trigger: AGTTGCTGGACGTTGACCCCAATGACCAGGAGGAGG...CAGGGAAGACTCTGCTTGCCCGAGCCTGTGCTGCTCAGACCAAGGCCACCTTCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146506.2 |
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| CDS-3UTR CCA 90 bp | AGCGCTGCCTCATGTCTCTGCTTTGCAGCCGGAGCCTGGCGACTGAGGCAGCTGCATCAGCACTCCTTTTaGGGGCTGGATACCCAAGTT | + |
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Preference number: 4 (lower is better) Translates to: SAASCLCFAAGAWRLRQLHQHSF*GLDTQV Trigger: AACTTGGGTATCCAGCCCCCAAAAGGAGTGCTGATG...CAGCTGCCTCAGTCGCCAGGCTCCGGCTGCAAAGCAGAGACATGAGGCAGCGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS-3UTR CCA 90 bp | AGAAGGTGGCCTTGGTCTGAGCAGCACAGGCTCGGGCAAGCAGAGTCTTCCCTGAGGAAGAAGTCCTCCTaGATCTGCTTGTCCAGGCCC | + |
|
Preference number: 4 (lower is better) Translates to: RRWPWSEQHRLGQAESSLRKKSS*ICLSRP Trigger: GGGCCTGGACAAGCAGATCCAGGAGGACTTCTTCCT...CAGGGAAGACTCTGCTTGCCCGAGCCTGTGCTGCTCAGACCAAGGCCACCTTCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146506.2 |
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| CDS-3UTR TCA 90 bp | GAGCTTAGTAGCAGAGGCTCAGCGCTGCCTCATGTCTCTGCTTTGCAGCCGGAGAACATCTGTACCAGCTaGGGGCCTGCCAGCTTCAAG | + |
|
Preference number: 4 (lower is better) Translates to: ELSSRGSALPHVSALQPENICTS*GPASFK Trigger: CTTGAAGCTGGCAGGCCCTCAGCTGGTACAGATGTT...CTCCGGCTGCAAAGCAGAGACATGAGGCAGCGCTGAGCCTCTGCTACTAAGCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS-3UTR CCA 90 bp | GTAGCAGAGGCTCAGCGCTGCCTCATGTCTCTGCTTTGCAGCCGGAGCCTGGCGACTCCTTTTGGGGGCTaGATACCCAAGTTCTCAAAC | + |
|
Preference number: 4 (lower is better) Translates to: VAEAQRCLMSLLCSRSLATPFGG*IPKFSN Trigger: GTTTGAGAACTTGGGTATCCAGCCCCCAAAAGGAGT...CGCCAGGCTCCGGCTGCAAAGCAGAGACATGAGGCAGCGCTGAGCCTCTGCTAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS-3UTR CCA 90 bp | CCAGCTTCAAGAAGGTGGCCTTGGTCTGAGCAGCACAGGCTCGGGCAAGCAGAGGAGAGTCATATTCAGTaGGCAGGGTCTCCAGGATCA | + |
|
Preference number: 4 (lower is better) Translates to: PASRRWPWSEQHRLGQAEESHIQ*AGSPGS Trigger: TGATCCTGGAGACCCTGCCCACTGAATATGACTCTC...CTCTGCTTGCCCGAGCCTGTGCTGCTCAGACCAAGGCCACCTTCTTGAAGCTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146506.2 |
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| CDS-3UTR GCA 90 bp | CCAGCTTCAAGAAGGTGGCCTTGGTCTGAGCAGCACAGGCTCGGGCAAGCAGAGTGGCTTCAGCTTTTCTaGATCCACCAACCCAATCAC | + |
|
Preference number: 4 (lower is better) Translates to: PASRRWPWSEQHRLGQAEWLQLF*IHQPNH Trigger: GTGATTGGGTTGGTGGATGCAGAAAAGCTGAAGCCA...CTCTGCTTGCCCGAGCCTGTGCTGCTCAGACCAAGGCCACCTTCTTGAAGCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146506.2 |
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| CDS-3UTR GCA 90 bp | ACCAATAACAGTCAGTCCACAATGATCCCACAGTCCACGGGAGATCTTCCTGAGACGTGTTTCTGCACCTaGTGCCGGAGGCGTGGGCCT | + |
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Preference number: 4 (lower is better) Translates to: TNNSQSTMIPQSTGDLPETCFCT*CRRRGP Trigger: AGGCCCACGCCTCCGGCAGCAGGTGCAGAAACACGT...CTCAGGAAGATCTCCCGTGGACTGTGGGATCATTGTGGACTGACTGTTATTGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS-3UTR GCA 90 bp | CTTGGCGCCATCTCCAATAAACATCTGTACCAGCTGAGGGCCTGCCAGCTTCAAATGGCTTCCACCAGCTaGCAGGAAGAAGTCCTCCTG | + |
|
Preference number: 4 (lower is better) Translates to: LGAISNKHLYQLRACQLQMASTS*QEEVLL Trigger: CAGGAGGACTTCTTCCTGGCAGCTGGTGGAAGCCAT...TTGAAGCTGGCAGGCCCTCAGCTGGTACAGATGTTTATTGGAGATGGCGCCAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146506.2 |
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| CDS-3UTR CCA 90 bp | GGCGCCATCTCCAATAAACATCTGTACCAGCTGAGGGCCTGCCAGCTTCAAGAAAACAGCCGTGTGCGCTaGACAATCTCTTCCGTGGAC | + |
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Preference number: 4 (lower is better) Translates to: GAISNKHLYQLRACQLQENSRVR*TISSVD Trigger: GTCCACGGAAGAGATTGTCCAGCGCACACGGCTGTT...TTCTTGAAGCTGGCAGGCCCTCAGCTGGTACAGATGTTTATTGGAGATGGCGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146506.2 |
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| 3UTR CAA 72 bp | CCTGAGAACAGCCGCCCAAACCTAGCCTTTGGAAGCTaGCAGTCTAGAAAGCCAGTGAGATGGGCGAGCTTA | + |
|
Preference number: 4 (lower is better) Translates to: PENSRPNLAFGS*QSRKPVRWASL Trigger: TAAGCTCGCCCATCTCACTGGCTTTCTAGACTGCAAGCTTCCAAAGGCTAGGTTTGGGCGGCTGTTCTCAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS-3UTR TCA 90 bp | CTTGGCGCCATCTCCAATAAACATCTGTACCAGCTGAGGGCCTGCCAGCTTCAACGTCCAGCAACTCGATaGCATTGGAGACAAGGTACG | + |
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Preference number: 4 (lower is better) Translates to: LGAISNKHLYQLRACQLQRPATR*HWRQGT Trigger: CGTACCTTGTCTCCAATGTCATCGAGTTGCTGGACG...TTGAAGCTGGCAGGCCCTCAGCTGGTACAGATGTTTATTGGAGATGGCGCCAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146506.2 |
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| CDS-3UTR GCA 90 bp | CTTGGCGCCATCTCCAATAAACATCTGTACCAGCTGAGGGCCTGCCAGCTTCAATCCCCAATGCCATCTTaGTCAGCTTCATCCCACACG | + |
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Preference number: 4 (lower is better) Translates to: LGAISNKHLYQLRACQLQSPMPS*SASSHT Trigger: CGTGTGGGATGAAGCTGAGCAAGATGGCATTGGGGA...TTGAAGCTGGCAGGCCCTCAGCTGGTACAGATGTTTATTGGAGATGGCGCCAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146506.2 |
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| CDS-3UTR CCA 90 bp | CTTGCCAGGGTCCAAGCCTGTCTCTTAACCAATAACAGTCAGTCCACAATGATCGCTTCCACCAGCTCCTaGATCTGCTTGTCCAGGCCC | + |
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Preference number: 4 (lower is better) Translates to: LARVQACLLTNNSQSTMIASTSS*ICLSRP Trigger: GGGCCTGGACAAGCAGATCCAGGAGCTGGTGGAAGC...GATCATTGTGGACTGACTGTTATTGGTTAAGAGACAGGCTTGGACCCTGGCAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS-3UTR GCA 90 bp | GCCTTTGGAAGCTTGCAGTCTAGAAAGCCAGTGAGATGGGCGAGCTTAGTAGCAGCACCTCCTCCCCAATaGCATCTTGCTCAGCTTCAT | + |
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Preference number: 4 (lower is better) Translates to: AFGSLQSRKPVRWASLVAAPPPQ*HLAQLH Trigger: ATGAAGCTGAGCAAGATGGCATTGGGGAGGAGGTGC...TGCTACTAAGCTCGCCCATCTCACTGGCTTTCTAGACTGCAAGCTTCCAAAGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS-3UTR GCA 90 bp | ACGGGAGATCTTCCTGAGAACAGCCGCCCAAACCTAGCCTTTGGAAGCTTGCAGTGGCTTCAGCTTTTCTaGATCCACCAACCCAATCAC | + |
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Preference number: 4 (lower is better) Translates to: TGDLPENSRPNLAFGSLQWLQLF*IHQPNH Trigger: GTGATTGGGTTGGTGGATGCAGAAAAGCTGAAGCCA...CTGCAAGCTTCCAAAGGCTAGGTTTGGGCGGCTGTTCTCAGGAAGATCTCCCGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS-3UTR CCA 90 bp | CTTGCCAGGGTCCAAGCCTGTCTCTTAACCAATAACAGTCAGTCCACAATGATCAACAGCCGTGTGCGCTaGACAATCTCTTCCGTGGAC | + |
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Preference number: 4 (lower is better) Translates to: LARVQACLLTNNSQSTMINSRVR*TISSVD Trigger: GTCCACGGAAGAGATTGTCCAGCGCACACGGCTGTT...GATCATTGTGGACTGACTGTTATTGGTTAAGAGACAGGCTTGGACCCTGGCAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS-3UTR CCA 90 bp | CTTGCCAGGGTCCAAGCCTGTCTCTTAACCAATAACAGTCAGTCCACAATGATCCCAGCTTCAAGAAGGTaGCCTTGGTCTGAGCAGCAC | + |
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Preference number: 4 (lower is better) Translates to: LARVQACLLTNNSQSTMIPASRR*PWSEQH Trigger: GTGCTGCTCAGACCAAGGCCACCTTCTTGAAGCTGG...GATCATTGTGGACTGACTGTTATTGGTTAAGAGACAGGCTTGGACCCTGGCAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS-3UTR GCA 90 bp | CTTGCCAGGGTCCAAGCCTGTCTCTTAACCAATAACAGTCAGTCCACAATGATCTCCCCAATGCCATCTTaGTCAGCTTCATCCCACACG | + |
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Preference number: 4 (lower is better) Translates to: LARVQACLLTNNSQSTMISPMPS*SASSHT Trigger: CGTGTGGGATGAAGCTGAGCAAGATGGCATTGGGGA...GATCATTGTGGACTGACTGTTATTGGTTAAGAGACAGGCTTGGACCCTGGCAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS-3UTR CCA 90 bp | AGTCTCAGAAGTTTTTATTTTGTGGTTGCCATCAGATGGATTAGAGATCCAGAACTCCTGCCGAGTCACTaGACTCTCGGGCGTCGGCAG | + |
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Preference number: 4 (lower is better) Translates to: SLRSFYFVVAIRWIRDPELLPSH*TLGRRQ Trigger: CTGCCGACGCCCGAGAGTCCAGTGACTCGGCAGGAG...TTCTGGATCTCTAATCCATCTGATGGCAACCACAAAATAAAAACTTCTGAGACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS-3UTR CCA 90 bp | AGTTTTTATTTTGTGGTTGCCATCAGATGGATTAGAGATCCAGAACTTGCCAGGTCAAGAAGGTGGCCTTaGTCTGAGCAGCACAGGCTC | + |
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Preference number: 4 (lower is better) Translates to: SFYFVVAIRWIRDPELARSRRWP*SEQHRL Trigger: GAGCCTGTGCTGCTCAGACCAAGGCCACCTTCTTGA...CCTGGCAAGTTCTGGATCTCTAATCCATCTGATGGCAACCACAAAATAAAAACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS-3UTR CCA 90 bp | GTTTTTATTTTGTGGTTGCCATCAGATGGATTAGAGATCCAGAACTTGCCAGGGCTCCTCGTTGGGCATTaGAAACTCAATCTTGCGGTC | + |
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Preference number: 4 (lower is better) Translates to: VFILWLPSDGLEIQNLPGLLVGH*KLNLAV Trigger: GACCGCAAGATTGAGTTTCCAATGCCCAACGAGGAG...CCCTGGCAAGTTCTGGATCTCTAATCCATCTGATGGCAACCACAAAATAAAAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS-3UTR TCA 90 bp | GTCTCAGAAGTTTTTATTTTGTGGTTGCCATCAGATGGATTAGAGATCCAGAACCGTCCAGCAACTCGATaGCATTGGAGACAAGGTACG | + |
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Preference number: 4 (lower is better) Translates to: VSEVFILWLPSDGLEIQNRPATR*HWRQGT Trigger: CGTACCTTGTCTCCAATGTCATCGAGTTGCTGGACG...GTTCTGGATCTCTAATCCATCTGATGGCAACCACAAAATAAAAACTTCTGAGAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS-3UTR CCA 90 bp | AGTCTCAGAAGTTTTTATTTTGTGGTTGCCATCAGATGGATTAGAGATCCAGAACCTCCTCCTGGTCATTaGGGTCAACGTCCAGCAACT | + |
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Preference number: 4 (lower is better) Translates to: SLRSFYFVVAIRWIRDPEPPPGH*GQRPAT Trigger: AGTTGCTGGACGTTGACCCCAATGACCAGGAGGAGG...TTCTGGATCTCTAATCCATCTGATGGCAACCACAAAATAAAAACTTCTGAGACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS-3UTR CCA 90 bp | AGTCTCAGAAGTTTTTATTTTGTGGTTGCCATCAGATGGATTAGAGATCCAGAACAGCTTTGCCTTAGGTaGACTCCTGGGCAACGTGTT | + |
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Preference number: 4 (lower is better) Translates to: SLRSFYFVVAIRWIRDPEQLCLR*TPGQRV Trigger: AACACGTTGCCCAGGAGTCCACCTAAGGCAAAGCTG...TTCTGGATCTCTAATCCATCTGATGGCAACCACAAAATAAAAACTTCTGAGACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS-3UTR GCA 90 bp | GTCTCAGAAGTTTTTATTTTGTGGTTGCCATCAGATGGATTAGAGATCCAGAACGAAAATAATAGATGGTaGCTTCTCCTTGGCCAGGGC | + |
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Preference number: 4 (lower is better) Translates to: VSEVFILWLPSDGLEIQNENNRW*LLLGQG Trigger: GCCCTGGCCAAGGAGAAGGCACCATCTATTATTTTC...GTTCTGGATCTCTAATCCATCTGATGGCAACCACAAAATAAAAACTTCTGAGAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS-3UTR CCA 90 bp | AGTCTCAGAAGTTTTTATTTTGTGGTTGCCATCAGATGGATTAGAGATCCAGAAGAGAGTCATATTCAGTaGGCAGGGTCTCCAGGATCA | + |
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Preference number: 4 (lower is better) Translates to: SLRSFYFVVAIRWIRDPEESHIQ*AGSPGS Trigger: TGATCCTGGAGACCCTGCCCACTGAATATGACTCTC...TTCTGGATCTCTAATCCATCTGATGGCAACCACAAAATAAAAACTTCTGAGACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS-3UTR CCA 90 bp | GTCTCAGAAGTTTTTATTTTGTGGTTGCCATCAGATGGATTAGAGATCCAGAACTATGAAAATAATAGATaGTGCCTTCTCCTTGGCCAG | + |
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Preference number: 4 (lower is better) Translates to: VSEVFILWLPSDGLEIQNYENNR*CLLLGQ Trigger: CTGGCCAAGGAGAAGGCACCATCTATTATTTTCATA...GTTCTGGATCTCTAATCCATCTGATGGCAACCACAAAATAAAAACTTCTGAGAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS CCA 90 bp | GGTGGACTCCTGGGCAACGTGTTTCTGCACCTGCTGCCGGAGGCGTaGGCCTACACCAAGCATGTCCAACCCGCAGCTTGGGGTCGCACG | + |
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Preference number: 5 (lower is better) Translates to: GGLLGNVFLHLLPEA*AYTKHVQPAAWGRT Trigger: CGTGCGACCCCAAGCTGCGGGTTGGACATGCTTGGTGTAGGCCCACGCCTCCGGCAGCAGGTGCAGAAACACGTTGCCCAGGAGTCCACC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS TCA 90 bp | CATGTCCAACCCGCAGCTTGGGGTCGCACGTGTCCCGGTGTGCTGTaGATGCAGCCCAGCACATCGCCTCCACACACACGGCCTTGCACT | + |
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Preference number: 5 (lower is better) Translates to: HVQPAAWGRTCPGVL*MQPSTSPPHTRPCT Trigger: AGTGCAAGGCCGTGTGTGTGGAGGCGATGTGCTGGGCTGCATTCACAGCACACCGGGACACGTGCGACCCCAAGCTGCGGGTTGGACATG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS-3UTR CAA 90 bp | CTCAGCGCTGCCTCATGTCTCTGCTTTGCAGCCGGAGCCTGGCGACTGAGGCAGTCCACACACACGGCCTaGCACTGGGCTCCATTGAAG | + |
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Preference number: 5 (lower is better) Translates to: LSAASCLCFAAGAWRLRQSTHTA*HWAPLK Trigger: CTTCAATGGAGCCCAGTGCAAGGCCGTGTGTGTGGA...CTGCCTCAGTCGCCAGGCTCCGGCTGCAAAGCAGAGACATGAGGCAGCGCTGAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS-3UTR CAA 90 bp | GAGGCTCAGCGCTGCCTCATGTCTCTGCTTTGCAGCCGGAGCCTGGCGACTGAGGCATCACGGACCAGCTaGGCGCCATCTCCAATAAAC | + |
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Preference number: 5 (lower is better) Translates to: EAQRCLMSLLCSRSLATEASRTS*APSPIN Trigger: GTTTATTGGAGATGGCGCCAAGCTGGTCCGTGATGC...CTCAGTCGCCAGGCTCCGGCTGCAAAGCAGAGACATGAGGCAGCGCTGAGCCTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS-3UTR CAA 90 bp | AGCGCTGCCTCATGTCTCTGCTTTGCAGCCGGAGCCTGGCGACTGAGGCAGCTGTCACTCTTCATGATCTaGATCTCGCTGTCTAACAGC | + |
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Preference number: 5 (lower is better) Translates to: SAASCLCFAAGAWRLRQLSLFMI*ISLSNS Trigger: GCTGTTAGACAGCGAGATCAAGATCATGAAGAGTGA...CAGCTGCCTCAGTCGCCAGGCTCCGGCTGCAAAGCAGAGACATGAGGCAGCGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS-3UTR CAA 90 bp | AGCTTAGTAGCAGAGGCTCAGCGCTGCCTCATGTCTCTGCTTTGCAGCCGGAGCACATCAGCACTCCTTTaGGGGGCTGGATACCCAAGT | + |
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Preference number: 5 (lower is better) Translates to: SLVAEAQRCLMSLLCSRSTSALL*GAGYPS Trigger: ACTTGGGTATCCAGCCCCCAAAAGGAGTGCTGATGT...GCTCCGGCTGCAAAGCAGAGACATGAGGCAGCGCTGAGCCTCTGCTACTAAGCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS-3UTR CAA 90 bp | ACGGGAGATCTTCCTGAGAACAGCCGCCCAAACCTAGCCTTTGGAAGCTTGCAGGATGGTGCCTTCTCCTaGGCCAGGGCAAAAGCATCA | + |
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Preference number: 5 (lower is better) Translates to: TGDLPENSRPNLAFGSLQDGAFS*ARAKAS Trigger: TGATGCTTTTGCCCTGGCCAAGGAGAAGGCACCATC...CTGCAAGCTTCCAAAGGCTAGGTTTGGGCGGCTGTTCTCAGGAAGATCTCCCGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS-3UTR CAA 90 bp | GGCGCCATCTCCAATAAACATCTGTACCAGCTGAGGGCCTGCCAGCTTCAAGAAAGCAACTCGATGACATaGGAGACAAGGTACGGCAGG | + |
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Preference number: 5 (lower is better) Translates to: GAISNKHLYQLRACQLQESNSMT*ETRYGR Trigger: CCTGCCGTACCTTGTCTCCAATGTCATCGAGTTGCT...TTCTTGAAGCTGGCAGGCCCTCAGCTGGTACAGATGTTTATTGGAGATGGCGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146506.2 |
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| CDS-3UTR CAA 90 bp | CTTGGCGCCATCTCCAATAAACATCTGTACCAGCTGAGGGCCTGCCAGCTTCAATCACTCTTCATGATCTaGATCTCGCTGTCTAACAGC | + |
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Preference number: 5 (lower is better) Translates to: LGAISNKHLYQLRACQLQSLFMI*ISLSNS Trigger: GCTGTTAGACAGCGAGATCAAGATCATGAAGAGTGA...TTGAAGCTGGCAGGCCCTCAGCTGGTACAGATGTTTATTGGAGATGGCGCCAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146506.2 |
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| CDS-3UTR CAA 90 bp | CAAGCCTGTCTCTTAACCAATAACAGTCAGTCCACAATGATCCCACAGTCCACGAGCAACTCGATGACATaGGAGACAAGGTACGGCAGG | + |
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Preference number: 5 (lower is better) Translates to: QACLLTNNSQSTMIPQSTSNSMT*ETRYGR Trigger: CCTGCCGTACCTTGTCTCCAATGTCATCGAGTTGCT...CGTGGACTGTGGGATCATTGTGGACTGACTGTTATTGGTTAAGAGACAGGCTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS-3UTR CAA 90 bp | CTTGCCAGGGTCCAAGCCTGTCTCTTAACCAATAACAGTCAGTCCACAATGATCTGTCGGGTAGAAGTTTaGATCACCGCACACTTGCCC | + |
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Preference number: 5 (lower is better) Translates to: LARVQACLLTNNSQSTMICRVEV*ITAHLP Trigger: GGGCAAGTGTGCGGTGATCAAAACTTCTACCCGACA...GATCATTGTGGACTGACTGTTATTGGTTAAGAGACAGGCTTGGACCCTGGCAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS-3UTR CAA 90 bp | ACCAATAACAGTCAGTCCACAATGATCCCACAGTCCACGGGAGATCTTCCTGAGTGCAATTACCTTCACTaGAGTGTTGGGCTGAAAGCC | + |
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Preference number: 5 (lower is better) Translates to: TNNSQSTMIPQSTGDLPECNYLH*SVGLKA Trigger: GGCTTTCAGCCCAACACTCAAGTGAAGGTAATTGCA...CTCAGGAAGATCTCCCGTGGACTGTGGGATCATTGTGGACTGACTGTTATTGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS TCA 72 bp | CCCGCAGCTTGGGGTCGCACGTGTCCCGGTGTGCTGTaGATGCAGCCCAGCACATCGCCTCCACACACACGG | + |
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Preference number: 6 (lower is better) Translates to: PAAWGRTCPGVL*MQPSTSPPHTR Trigger: CCGTGTGTGTGGAGGCGATGTGCTGGGCTGCATTCACAGCACACCGGGACACGTGCGACCCCAAGCTGCGGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS GCA 72 bp | CAGCTTGGGGTCGCACGTGTCCCGGTGTGCTGTGAATaGAGCCCAGCACATCGCCTCCACACACACGGCCTT | + |
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Preference number: 6 (lower is better) Translates to: QLGVARVPVCCE*SPAHRLHTHGL Trigger: AAGGCCGTGTGTGTGGAGGCGATGTGCTGGGCTGCATTCACAGCACACCGGGACACGTGCGACCCCAAGCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS CCA 72 bp | CTGGGCAACGTGTTTCTGCACCTGCTGCCGGAGGCGTaGGCCTACACCAAGCATGTCCAACCCGCAGCTTGG | + |
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Preference number: 6 (lower is better) Translates to: LGNVFLHLLPEA*AYTKHVQPAAW Trigger: CCAAGCTGCGGGTTGGACATGCTTGGTGTAGGCCCACGCCTCCGGCAGCAGGTGCAGAAACACGTTGCCCAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002171.14 |
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| CDS CAA 72 bp | GCTCTGGCCTCCTCGTTGGGCATTGGAAACTCAATCTaGCGGTCTAGGCGGCCTGAGCGCAGCAGGGCTGGA | + |
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Preference number: 6 (lower is better) Translates to: ALASSLGIGNSI*RSRRPERSRAG Trigger: TCCAGCCCTGCTGCGCTCAGGCCGCCTAGACCGCAAGATTGAGTTTCCAATGCCCAACGAGGAGGCCAGAGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000002171.14 ENSMUST00000067663.14 ENSMUST00000111441.10 |
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| CDS GCA 72 bp | CTCTGGCCTCCTCGTTGGGCATTGGAAACTCAATCTTaGGGTCTAGGCGGCCTGAGCGCAGCAGGGCTGGAT | + |
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Preference number: 6 (lower is better) Translates to: LWPPRWALETQS*GLGGLSAAGLD Trigger: ATCCAGCCCTGCTGCGCTCAGGCCGCCTAGACCGCAAGATTGAGTTTCCAATGCCCAACGAGGAGGCCAGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000002171.14 ENSMUST00000067663.14 ENSMUST00000111441.10 |
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| CDS GCA 72 bp | GTCCTCATGAGTGAGTTCCGTGGCTCCCCTGCGCAATaGGATCATACCCGCCTCCACACACACGGCCTTGCA | + |
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Preference number: 6 (lower is better) Translates to: VLMSEFRGSPAQ*DHTRLHTHGLA Trigger: TGCAAGGCCGTGTGTGTGGAGGCGGGTATGATCGCATTGCGCAGGGGAGCCACGGAACTCACTCATGAGGAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067663.14 ENSMUST00000111441.10 |
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| CDS CCA 72 bp | ATCCCACACGGTCGCCATCTTCTCCTGCCGAGTCACTaGACTCTCGGGCGTCGGCAGCAGATTCATTTCCTG | + |
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Preference number: 6 (lower is better) Translates to: IPHGRHLLLPSH*TLGRRQQIHFL Trigger: CAGGAAATGAATCTGCTGCCGACGCCCGAGAGTCCAGTGACTCGGCAGGAGAAGATGGCGACCGTGTGGGAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000002171.14 ENSMUST00000067663.14 ENSMUST00000111441.10 |
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| CDS CAA 90 bp | ATGATTCTGGCTCTGGCCTCCTCGTTGGGCATTGGAAACTCAATCTaGCGGTCTAGGCGGCCTGAGCGCAGCAGGGCTGGATCCAGGATG | + |
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Preference number: 6 (lower is better) Translates to: MILALASSLGIGNSI*RSRRPERSRAGSRM Trigger: CATCCTGGATCCAGCCCTGCTGCGCTCAGGCCGCCTAGACCGCAAGATTGAGTTTCCAATGCCCAACGAGGAGGCCAGAGCCAGAATCAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000002171.14 ENSMUST00000067663.14 ENSMUST00000111441.10 |
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| CDS TCA 72 bp | CCTCCTCCTGGTCATTGGGGTCAACGTCCAGCAACTTaGTCTCGCTGTCTAACAGCCGTGTGCGCTGGACAA | + |
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Preference number: 6 (lower is better) Translates to: PPPGHWGQRPAT*SRCLTAVCAGQ Trigger: TTGTCCAGCGCACACGGCTGTTAGACAGCGAGATCAAGTTGCTGGACGTTGACCCCAATGACCAGGAGGAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111441.10 |
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| CDS CAA 72 bp | ACCTCTCGGTCTCCTGCCTTTTCACTGTCGAAGCGTTaGGTACCAATGGCATCCAATTCGTCTATGAAAATA | + |
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Preference number: 6 (lower is better) Translates to: TSRSPAFSLSKR*VPMASNSSMKI Trigger: TATTTTCATAGACGAATTGGATGCCATTGGTACCAAACGCTTCGACAGTGAAAAGGCAGGAGACCGAGAGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000002171.14 ENSMUST00000067663.14 ENSMUST00000111441.10 ENSMUST00000185715.7 |
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