RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PSMC2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028932

Ensembl transcript IDs: ENSMUST00000030769.7, ENSMUST00000239497.2

Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp GCGGTGGCAACAAGTTACAAAAGCACAGGAAGTTCTTTCACTCAGAGCCCTGGGTCAGTGGGTGCCACCTaGTCACTGAGATCCACCACG +
Preference number: 4 (lower is better)
Translates to: AVATSYKSTGSSFTQSPGSVGAT*SLRSTT
Trigger: CGTGGTGGATCTCAGTGATCAGGTGGCACCCACTGA...CCCAGGGCTCTGAGTGAAAGAACTTCCTGTGCTTTTGTAACTTGTTGCCACCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030769.7
ENSMUST00000239497.2
CDS-3UTR TCA 90 bp GTGCGGTGGCAACAAGTTACAAAAGCACAGGAAGTTCTTTCACTCAGAGCCCTGTCAGTGGGTGCCACCTaGTCACTGAGATCCACCACG +
Preference number: 4 (lower is better)
Translates to: VRWQQVTKAQEVLSLRALSVGAT*SLRSTT
Trigger: CGTGGTGGATCTCAGTGATCAGGTGGCACCCACTGA...CAGGGCTCTGAGTGAAAGAACTTCCTGTGCTTTTGTAACTTGTTGCCACCGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030769.7
ENSMUST00000239497.2
CDS-3UTR CCA 90 bp CGGTGGCAACAAGTTACAAAAGCACAGGAAGTTCTTTCACTCAGAGCCCTGGGGCCTTCTCCTCCTCTTTaGTTTTCCGCTGGTCCGCAC +
Preference number: 4 (lower is better)
Translates to: RWQQVTKAQEVLSLRALGPSPPL*FSAGPH
Trigger: GTGCGGACCAGCGGAAAACCAAAGAGGAGGAGAAGG...CCCCAGGGCTCTGAGTGAAAGAACTTCCTGTGCTTTTGTAACTTGTTGCCACCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000030769.7
ENSMUST00000239497.2
CDS-3UTR CCA 90 bp GCGGTGGCAACAAGTTACAAAAGCACAGGAAGTTCTTTCACTCAGAGCCCTGGGCCTTCTCCTCCTCTTTaGTTTTCCGCTGGTCCGCAC +
Preference number: 4 (lower is better)
Translates to: AVATSYKSTGSSFTQSPGPSPPL*FSAGPH
Trigger: GTGCGGACCAGCGGAAAACCAAAGAGGAGGAGAAGG...CCCAGGGCTCTGAGTGAAAGAACTTCCTGTGCTTTTGTAACTTGTTGCCACCGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030769.7
ENSMUST00000239497.2
CDS-3UTR GCA 90 bp GGTGGCAACAAGTTACAAAAGCACAGGAAGTTCTTTCACTCAGAGCCCTGGGGCAGTCCGATTGGCAACTaGCCTAGCACAGAGTGTCTT +
Preference number: 4 (lower is better)
Translates to: GGNKLQKHRKFFHSEPWGSPIGN*PSTECL
Trigger: AAGACACTCTGTGCTAGGGCAGTTGCCAATCGGACT...GCCCCAGGGCTCTGAGTGAAAGAACTTCCTGTGCTTTTGTAACTTGTTGCCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030769.7
ENSMUST00000239497.2
CDS-3UTR CCA 90 bp TGTGCGGTGGCAACAAGTTACAAAAGCACAGGAAGTTCTTTCACTCAGAGCCCTCATCCAGAGCTCGGATaGGCTTGTCGTCCTTCTCCT +
Preference number: 4 (lower is better)
Translates to: CAVATSYKSTGSSFTQSPHPELG*ACRPSP
Trigger: AGGAGAAGGACGACAAGCCCATCCGAGCTCTGGATG...AGGGCTCTGAGTGAAAGAACTTCCTGTGCTTTTGTAACTTGTTGCCACCGCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030769.7
ENSMUST00000239497.2
CDS-3UTR GCA 90 bp GGTGGCAACAAGTTACAAAAGCACAGGAAGTTCTTTCACTCAGAGCCCTGGGGCGGTTTTTCCTCCACCTaGATCATGGTAACTGTTGGG +
Preference number: 4 (lower is better)
Translates to: GGNKLQKHRKFFHSEPWGGFSST*IMVTVG
Trigger: CCCAACAGTTACCATGATGCAGGTGGAGGAAAAACC...GCCCCAGGGCTCTGAGTGAAAGAACTTCCTGTGCTTTTGTAACTTGTTGCCACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000030769.7
ENSMUST00000239497.2
CDS-3UTR GCA 90 bp TGCGGTGGCAACAAGTTACAAAAGCACAGGAAGTTCTTTCACTCAGAGCCCTGGAGTCCGATTGGCAACTaGCCTAGCACAGAGTGTCTT +
Preference number: 4 (lower is better)
Translates to: CGGNKLQKHRKFFHSEPWSPIGN*PSTECL
Trigger: AAGACACTCTGTGCTAGGGCAGTTGCCAATCGGACT...CCAGGGCTCTGAGTGAAAGAACTTCCTGTGCTTTTGTAACTTGTTGCCACCGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030769.7
ENSMUST00000239497.2
CDS-3UTR TCA 90 bp GCGGTGGCAACAAGTTACAAAAGCACAGGAAGTTCTTTCACTCAGAGCCCTGGGCCTCCGAATCAGCGTTaGTTATCTTCGTACATCTTG +
Preference number: 4 (lower is better)
Translates to: AVATSYKSTGSSFTQSPGPPNQR*LSSYIL
Trigger: CAAGATGTACGAAGATAATCAACGCTGATTCGGAGG...CCCAGGGCTCTGAGTGAAAGAACTTCCTGTGCTTTTGTAACTTGTTGCCACCGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030769.7
ENSMUST00000239497.2
CDS-3UTR TCA 90 bp GGTGGCAACAAGTTACAAAAGCACAGGAAGTTCTTTCACTCAGAGCCCTGGGGCCCTCCGAATCAGCGTTaGTTATCTTCGTACATCTTG +
Preference number: 4 (lower is better)
Translates to: GGNKLQKHRKFFHSEPWGPPNQR*LSSYIL
Trigger: CAAGATGTACGAAGATAATCAACGCTGATTCGGAGG...GCCCCAGGGCTCTGAGTGAAAGAACTTCCTGTGCTTTTGTAACTTGTTGCCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030769.7
ENSMUST00000239497.2
CDS-3UTR TCA 90 bp GGTGGCAACAAGTTACAAAAGCACAGGAAGTTCTTTCACTCAGAGCCCTGGGGCCTCATTGAGCGAGCGTaGATCTTAAAGATGTGCGTT +
Preference number: 4 (lower is better)
Translates to: GGNKLQKHRKFFHSEPWGLIERA*ILKMCV
Trigger: AACGCACATCTTTAAGATTCACGCTCGCTCAATGAG...GCCCCAGGGCTCTGAGTGAAAGAACTTCCTGTGCTTTTGTAACTTGTTGCCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030769.7
ENSMUST00000239497.2
CDS-3UTR TCA 90 bp GGTGGCAACAAGTTACAAAAGCACAGGAAGTTCTTTCACTCAGAGCCCTGGGGCCATCTTCAACCTGCTTaGTCTGCCTTGAATAAGTAC +
Preference number: 4 (lower is better)
Translates to: GGNKLQKHRKFFHSEPWGHLQPA*SALNKY
Trigger: GTACTTATTCAAGGCAGATCAAGCAGGTTGAAGATG...GCCCCAGGGCTCTGAGTGAAAGAACTTCCTGTGCTTTTGTAACTTGTTGCCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030769.7
ENSMUST00000239497.2
CDS-3UTR TCA 90 bp GTGCGGTGGCAACAAGTTACAAAAGCACAGGAAGTTCTTTCACTCAGAGCCCTGCTCATTGAGCGAGCGTaGATCTTAAAGATGTGCGTT +
Preference number: 4 (lower is better)
Translates to: VRWQQVTKAQEVLSLRALLIERA*ILKMCV
Trigger: AACGCACATCTTTAAGATTCACGCTCGCTCAATGAG...CAGGGCTCTGAGTGAAAGAACTTCCTGTGCTTTTGTAACTTGTTGCCACCGCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030769.7
ENSMUST00000239497.2
CDS-3UTR GCA 90 bp TGTGCGGTGGCAACAAGTTACAAAAGCACAGGAAGTTCTTTCACTCAGAGCCCTGGTTTTTCCTCCACCTaGATCATGGTAACTGTTGGG +
Preference number: 4 (lower is better)
Translates to: CAVATSYKSTGSSFTQSPGFSST*IMVTVG
Trigger: CCCAACAGTTACCATGATGCAGGTGGAGGAAAAACC...AGGGCTCTGAGTGAAAGAACTTCCTGTGCTTTTGTAACTTGTTGCCACCGCACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030769.7
ENSMUST00000239497.2
CDS-3UTR TCA 90 bp GTGCGGTGGCAACAAGTTACAAAAGCACAGGAAGTTCTTTCACTCAGAGCCCTGAATGGCTGTTCACTCTaGAGTGTTTGTTTGTCTGCA +
Preference number: 4 (lower is better)
Translates to: VRWQQVTKAQEVLSLRALNGCSL*SVCLSA
Trigger: TGCAGACAAACAAACACTTCAGAGTGAACAGCCATT...CAGGGCTCTGAGTGAAAGAACTTCCTGTGCTTTTGTAACTTGTTGCCACCGCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030769.7
ENSMUST00000239497.2
CDS-3UTR TCA 90 bp TGCGGTGGCAACAAGTTACAAAAGCACAGGAAGTTCTTTCACTCAGAGCCCTGGAATGGCTGTTCACTCTaGAGTGTTTGTTTGTCTGCA +
Preference number: 4 (lower is better)
Translates to: CGGNKLQKHRKFFHSEPWNGCSL*SVCLSA
Trigger: TGCAGACAAACAAACACTTCAGAGTGAACAGCCATT...CCAGGGCTCTGAGTGAAAGAACTTCCTGTGCTTTTGTAACTTGTTGCCACCGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030769.7
ENSMUST00000239497.2
CDS-3UTR CCA 90 bp CGGTGGCAACAAGTTACAAAAGCACAGGAAGTTCTTTCACTCAGAGCCCTGGGGATTGATGATGTATTTTaGGTCCTCCGAATCAGCGTT +
Preference number: 4 (lower is better)
Translates to: RWQQVTKAQEVLSLRALGIDDVF*VLRISV
Trigger: AACGCTGATTCGGAGGACCCAAAATACATCATCAAT...CCCCAGGGCTCTGAGTGAAAGAACTTCCTGTGCTTTTGTAACTTGTTGCCACCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000030769.7
ENSMUST00000239497.2
CDS-3UTR CCA 90 bp GCGGTGGCAACAAGTTACAAAAGCACAGGAAGTTCTTTCACTCAGAGCCCTGGGATTGATGATGTATTTTaGGTCCTCCGAATCAGCGTT +
Preference number: 4 (lower is better)
Translates to: AVATSYKSTGSSFTQSPGIDDVF*VLRISV
Trigger: AACGCTGATTCGGAGGACCCAAAATACATCATCAAT...CCCAGGGCTCTGAGTGAAAGAACTTCCTGTGCTTTTGTAACTTGTTGCCACCGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030769.7
ENSMUST00000239497.2
CDS-3UTR TCA 90 bp TGTGCGGTGGCAACAAGTTACAAAAGCACAGGAAGTTCTTTCACTCAGAGCCCTCATCTTCAACCTGCTTaGTCTGCCTTGAATAAGTAC +
Preference number: 4 (lower is better)
Translates to: CAVATSYKSTGSSFTQSPHLQPA*SALNKY
Trigger: GTACTTATTCAAGGCAGATCAAGCAGGTTGAAGATG...AGGGCTCTGAGTGAAAGAACTTCCTGTGCTTTTGTAACTTGTTGCCACCGCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030769.7
ENSMUST00000239497.2
CDS-3UTR TCA 90 bp CGGTGGCAACAAGTTACAAAAGCACAGGAAGTTCTTTCACTCAGAGCCCTGGGGTTTTTGAGAAGTTGTTaGATGTCATCTTCAACCTGC +
Preference number: 4 (lower is better)
Translates to: RWQQVTKAQEVLSLRALGFLRSC*MSSSTC
Trigger: GCAGGTTGAAGATGACATTCAACAACTTCTCAAAAA...CCCCAGGGCTCTGAGTGAAAGAACTTCCTGTGCTTTTGTAACTTGTTGCCACCG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000030769.7
ENSMUST00000239497.2
CDS CCA 90 bp TGCCTCCGCGTCTCGGTGATTACACAGCACCTTTCCCGCTTCCGCTaGTGTCTTCCCTTTCTCTTCCCCACCGGAAGTAGCTCCGCGCCC +
Preference number: 5 (lower is better)
Translates to: CLRVSVITQHLSRFR*CLPFLFPTGSSSAP
Trigger: GGGCGCGGAGCTACTTCCGGTGGGGAAGAGAAAGGGAAGACACCAGCGGAAGCGGGAAAGGTGCTGTGTAATCACCGAGACGCGGAGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239497.2
CDS-3UTR CAA 90 bp GGTGGCAACAAGTTACAAAAGCACAGGAAGTTCTTTCACTCAGAGCCCTGGGGCCTAGCACAGAGTGTCTaGCCTGTGCCTGGTGGCCCA +
Preference number: 5 (lower is better)
Translates to: GGNKLQKHRKFFHSEPWGLAQSV*PVPGGP
Trigger: TGGGCCACCAGGCACAGGCAAGACACTCTGTGCTAG...GCCCCAGGGCTCTGAGTGAAAGAACTTCCTGTGCTTTTGTAACTTGTTGCCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030769.7
ENSMUST00000239497.2
CDS-3UTR CAA 90 bp GCGGTGGCAACAAGTTACAAAAGCACAGGAAGTTCTTTCACTCAGAGCCCTGGGAGAGCTCGGATGGGCTaGTCGTCCTTCTCCTCCTCT +
Preference number: 5 (lower is better)
Translates to: AVATSYKSTGSSFTQSPGRARMG*SSFSSS
Trigger: AGAGGAGGAGAAGGACGACAAGCCCATCCGAGCTCT...CCCAGGGCTCTGAGTGAAAGAACTTCCTGTGCTTTTGTAACTTGTTGCCACCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030769.7
ENSMUST00000239497.2
CDS-3UTR CAA 90 bp GTGCGGTGGCAACAAGTTACAAAAGCACAGGAAGTTCTTTCACTCAGAGCCCTGCTAGCACAGAGTGTCTaGCCTGTGCCTGGTGGCCCA +
Preference number: 5 (lower is better)
Translates to: VRWQQVTKAQEVLSLRALLAQSV*PVPGGP
Trigger: TGGGCCACCAGGCACAGGCAAGACACTCTGTGCTAG...CAGGGCTCTGAGTGAAAGAACTTCCTGTGCTTTTGTAACTTGTTGCCACCGCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030769.7
ENSMUST00000239497.2
CDS-3UTR CAA 90 bp CGGTGGCAACAAGTTACAAAAGCACAGGAAGTTCTTTCACTCAGAGCCCTGGGGTCCTTCTCCTCCTCTTaGGTTTTCCGCTGGTCCGCA +
Preference number: 5 (lower is better)
Translates to: RWQQVTKAQEVLSLRALGSFSSS*VFRWSA
Trigger: TGCGGACCAGCGGAAAACCAAAGAGGAGGAGAAGGA...CCCCAGGGCTCTGAGTGAAAGAACTTCCTGTGCTTTTGTAACTTGTTGCCACCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000030769.7
ENSMUST00000239497.2
CDS-3UTR CAA 90 bp GGTGGCAACAAGTTACAAAAGCACAGGAAGTTCTTTCACTCAGAGCCCTGGGGCCAAGCATCAGTCCGATaGGCAACTGCCCTAGCACAG +
Preference number: 5 (lower is better)
Translates to: GGNKLQKHRKFFHSEPWGQASVR*ATALAQ
Trigger: CTGTGCTAGGGCAGTTGCCAATCGGACTGATGCTTG...GCCCCAGGGCTCTGAGTGAAAGAACTTCCTGTGCTTTTGTAACTTGTTGCCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030769.7
ENSMUST00000239497.2
CDS-3UTR CAA 90 bp TGCGGTGGCAACAAGTTACAAAAGCACAGGAAGTTCTTTCACTCAGAGCCCTGGCAAGCATCAGTCCGATaGGCAACTGCCCTAGCACAG +
Preference number: 5 (lower is better)
Translates to: CGGNKLQKHRKFFHSEPWQASVR*ATALAQ
Trigger: CTGTGCTAGGGCAGTTGCCAATCGGACTGATGCTTG...CCAGGGCTCTGAGTGAAAGAACTTCCTGTGCTTTTGTAACTTGTTGCCACCGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030769.7
ENSMUST00000239497.2
CDS-3UTR CAA 90 bp TGTGCGGTGGCAACAAGTTACAAAAGCACAGGAAGTTCTTTCACTCAGAGCCCTTCCTTCTCCTCCTCTTaGGTTTTCCGCTGGTCCGCA +
Preference number: 5 (lower is better)
Translates to: CAVATSYKSTGSSFTQSPSFSSS*VFRWSA
Trigger: TGCGGACCAGCGGAAAACCAAAGAGGAGGAGAAGGA...AGGGCTCTGAGTGAAAGAACTTCCTGTGCTTTTGTAACTTGTTGCCACCGCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030769.7
ENSMUST00000239497.2
CDS-3UTR CAA 90 bp GTGCGGTGGCAACAAGTTACAAAAGCACAGGAAGTTCTTTCACTCAGAGCCCTGATGAGCACCTTGATGTaGCCGCGAGGATCAAAGCCA +
Preference number: 5 (lower is better)
Translates to: VRWQQVTKAQEVLSLRALMSTLM*PRGSKP
Trigger: TGGCTTTGATCCTCGCGGCAACATCAAGGTGCTCAT...CAGGGCTCTGAGTGAAAGAACTTCCTGTGCTTTTGTAACTTGTTGCCACCGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030769.7
ENSMUST00000239497.2
CDS-3UTR CAA 90 bp TGCGGTGGCAACAAGTTACAAAAGCACAGGAAGTTCTTTCACTCAGAGCCCTGGATGAGCACCTTGATGTaGCCGCGAGGATCAAAGCCA +
Preference number: 5 (lower is better)
Translates to: CGGNKLQKHRKFFHSEPWMSTLM*PRGSKP
Trigger: TGGCTTTGATCCTCGCGGCAACATCAAGGTGCTCAT...CCAGGGCTCTGAGTGAAAGAACTTCCTGTGCTTTTGTAACTTGTTGCCACCGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030769.7
ENSMUST00000239497.2
CDS-3UTR CAA 90 bp GGTGGCAACAAGTTACAAAAGCACAGGAAGTTCTTTCACTCAGAGCCCTGGGGCTCCTCCGAATCAGCGTaGATTATCTTCGTACATCTT +
Preference number: 5 (lower is better)
Translates to: GGNKLQKHRKFFHSEPWGSSESA*IIFVHL
Trigger: AAGATGTACGAAGATAATCAACGCTGATTCGGAGGA...GCCCCAGGGCTCTGAGTGAAAGAACTTCCTGTGCTTTTGTAACTTGTTGCCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030769.7
ENSMUST00000239497.2
CDS-3UTR CAA 90 bp TGTGCGGTGGCAACAAGTTACAAAAGCACAGGAAGTTCTTTCACTCAGAGCCCTTCCTCCGAATCAGCGTaGATTATCTTCGTACATCTT +
Preference number: 5 (lower is better)
Translates to: CAVATSYKSTGSSFTQSPSSESA*IIFVHL
Trigger: AAGATGTACGAAGATAATCAACGCTGATTCGGAGGA...AGGGCTCTGAGTGAAAGAACTTCCTGTGCTTTTGTAACTTGTTGCCACCGCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030769.7
ENSMUST00000239497.2
CDS TCA 72 bp GGCATTTTAGAAGCCGCAAGTGCCTCCGCGTCTCGGTaGTTACACAGCACCTTTCCCGCTTCCGCTGGTGTC +
Preference number: 6 (lower is better)
Translates to: GILEAASASASR*LHSTFPASAGV
Trigger: GACACCAGCGGAAGCGGGAAAGGTGCTGTGTAATCACCGAGACGCGGAGGCACTTGCGGCTTCTAAAATGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239497.2
CDS CCA 72 bp GTCTCGGTGATTACACAGCACCTTTCCCGCTTCCGCTaGTGTCTTCCCTTTCTCTTCCCCACCGGAAGTAGC +
Preference number: 6 (lower is better)
Translates to: VSVITQHLSRFR*CLPFLFPTGSS
Trigger: GCTACTTCCGGTGGGGAAGAGAAAGGGAAGACACCAGCGGAAGCGGGAAAGGTGCTGTGTAATCACCGAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239497.2
CDS CCA 72 bp TGTGCAAACACTTCTAATCTCCGCTCCAGTACTGTTTaGACACAGGCGGGCCAACAGCTCAAATCGAATGTC +
Preference number: 6 (lower is better)
Translates to: CANTSNLRSSTV*TQAGQQLKSNV
Trigger: GACATTCGATTTGAGCTGTTGGCCCGCCTGTGTCCAAACAGTACTGGAGCGGAGATTAGAAGTGTTTGCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030769.7
ENSMUST00000239497.2