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Pregenerated sensors for PSMC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021178

Ensembl transcript IDs: ENSMUST00000021595.10

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGAGGCACAGTGTCCTCCACGATACAGGCTTTCTACTGGCAAACCTaGACTGGAGAATGGGTTCCTGGGGACAGCTCCCCATCCCTGAGG +
Preference number: 1 (lower is better)
Translates to: GGTVSSTIQAFYWQT*TGEWVPGDSSPSLR
Trigger: CCTCAGGGATGGGGAGCTGTCCCCAGGAACCCATTCTCCAGTTCAGGTTTGCCAGTAGAAAGCCTGTATCGTGGAGGACACTGTGCCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021595.10
3UTR CCA 90 bp TTTATTGGGAGTAGAGAGCAGCACGGCACAATGACCAACAACAGATaGAGGCACAGTGTCCTCCACGATACAGGCTTTCTACTGGCAAAC +
Preference number: 1 (lower is better)
Translates to: FIGSREQHGTMTNNR*RHSVLHDTGFLLAN
Trigger: GTTTGCCAGTAGAAAGCCTGTATCGTGGAGGACACTGTGCCTCCATCTGTTGTTGGTCATTGTGCCGTGCTGCTCTCTACTCCCAATAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021595.10
3UTR-3UTR CCA 90 bp AGTAGAGAGCAGCACGGCACAATGACCAACAACAGATGGAGGCACAGTGTCCTCTGGAGAATGGGTTCCTaGGGACAGCTCCCCATCCCT +
Preference number: 2 (lower is better)
Translates to: SREQHGTMTNNRWRHSVLWRMGS*GQLPIP
Trigger: AGGGATGGGGAGCTGTCCCCAGGAACCCATTCTCCA...GAGGACACTGTGCCTCCATCTGTTGTTGGTCATTGTGCCGTGCTGCTCTCTACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021595.10
3UTR-3UTR CCA 90 bp AGTAGAGAGCAGCACGGCACAATGACCAACAACAGATGGAGGCACAGTGTCCTCCTGGCAAACCTGAACTaGAGAATGGGTTCCTGGGGA +
Preference number: 2 (lower is better)
Translates to: SREQHGTMTNNRWRHSVLLANLN*RMGSWG
Trigger: TCCCCAGGAACCCATTCTCCAGTTCAGGTTTGCCAG...GAGGACACTGTGCCTCCATCTGTTGTTGGTCATTGTGCCGTGCTGCTCTCTACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021595.10
3UTR CCA 72 bp TTTCTACTGGCAAACCTGAACTGGAGAATGGGTTCCTaGGGACAGCTCCCCATCCCTGAGGACGACTGTGGG +
Preference number: 3 (lower is better)
Translates to: FLLANLNWRMGS*GQLPIPEDDCG
Trigger: CCCACAGTCGTCCTCAGGGATGGGGAGCTGTCCCCAGGAACCCATTCTCCAGTTCAGGTTTGCCAGTAGAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021595.10
3UTR CCA 72 bp CTCCACGATACAGGCTTTCTACTGGCAAACCTGAACTaGAGAATGGGTTCCTGGGGACAGCTCCCCATCCCT +
Preference number: 3 (lower is better)
Translates to: LHDTGFLLANLN*RMGSWGQLPIP
Trigger: AGGGATGGGGAGCTGTCCCCAGGAACCCATTCTCCAGTTCAGGTTTGCCAGTAGAAAGCCTGTATCGTGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021595.10
CDS-3UTR TCA 90 bp TTTCTACTGGCAAACCTGAACTGGAGAATGGGTTCCTGGGGACAGCTCCCCATCGGTCATCCTTTGCCATaGTCAAGTCATCCAAGGTTA +
Preference number: 4 (lower is better)
Translates to: FLLANLNWRMGSWGQLPIGHPLP*SSHPRL
Trigger: TAACCTTGGATGACTTGATCATGGCAAAGGATGACC...GATGGGGAGCTGTCCCCAGGAACCCATTCTCCAGTTCAGGTTTGCCAGTAGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021595.10
CDS-3UTR CAA 90 bp CAATCCTTTATTGGGAGTAGAGAGCAGCACGGCACAATGACCAACAACAGATGGTGGAAGATACGCTTCTaGGTCTTCTCATCCGGCAGG +
Preference number: 5 (lower is better)
Translates to: QSFIGSREQHGTMTNNRWWKIRF*VFSSGR
Trigger: CCTGCCGGATGAGAAGACCAAGAAGCGTATCTTCCA...CCATCTGTTGTTGGTCATTGTGCCGTGCTGCTCTCTACTCCCAATAAAGGATTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021595.10
CDS-3UTR CAA 90 bp CAATCCTTTATTGGGAGTAGAGAGCAGCACGGCACAATGACCAACAACAGATGGTGGTTCGCTACTGCTTaGGCCAATAGAGTTTTACCT +
Preference number: 5 (lower is better)
Translates to: QSFIGSREQHGTMTNNRWWFATA*ANRVLP
Trigger: AGGTAAAACTCTATTGGCCAAAGCAGTAGCGAACCA...CCATCTGTTGTTGGTCATTGTGCCGTGCTGCTCTCTACTCCCAATAAAGGATTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021595.10