Pregenerated sensors for PSMB9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000096727Ensembl transcript IDs: ENSMUST00000171321.2, ENSMUST00000173831.3, ENSMUST00000174576.4, ENSMUST00000237228.2
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTTTGCAGCAGCCAGAACGAGGGGCGGCTCCTCCAGCTCCAACCGTaGTTTCCTCTTCACAGACGCAGAACACTGGCTCCCAGACACTCC | + |
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Preference number: 1 (lower is better) Translates to: VCSSQNEGRLLQLQP*FPLHRRRTLAPRHS Trigger: GGAGTGTCTGGGAGCCAGTGTTCTGCGTCTGTGAAGAGGAAATCACGGTTGGAGCTGGAGGAGCCGCCCCTCGTTCTGGCTGCTGCAAAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237228.2 |
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| 3UTR TCA 90 bp | GATCTGGGCCGGGGAGGACGCTTCCCTCCACACACCGTGTCTCTCTaGTACACATATTTCACCTTTGCCCATCGCACCGGCCTTCTGGTT | + |
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Preference number: 1 (lower is better) Translates to: DLGRGGRFPPHTVSL*YTYFTFAHRTGLLV Trigger: AACCAGAAGGCCGGTGCGATGGGCAAAGGTGAAATATGTGTATCAGAGAGACACGGTGTGTGGAGGGAAGCGTCCTCCCCGGCCCAGATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000171321.2 ENSMUST00000174576.4 ENSMUST00000237228.2 |
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| 3UTR CCA 90 bp | AACAAGGAAGGGACTTCTGGGGATCAGTCACTCATCGTAGAATTTTaGCAGCTCATCTCCCAGGATGACTCGATGGTCCACACCAGCAGC | + |
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Preference number: 1 (lower is better) Translates to: NKEGTSGDQSLIVEF*QLISQDDSMVHTSS Trigger: GCTGCTGGTGTGGACCATCGAGTCATCCTGGGAGATGAGCTGCCAAAATTCTACGATGAGTGACTGATCCCCAGAAGTCCCTTCCTTGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000171321.2 ENSMUST00000237228.2 |
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| 3UTR-3UTR TCA 90 bp | TTGCAGCAGCCAGAACGAGGGGCGGCTCCTCCAGCTCCAACCGTGATTTCCTCTGCTCATCTCCCAGGATaGCTCGATGGTCCACACCAG | + |
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Preference number: 2 (lower is better) Translates to: LQQPERGAAPPAPTVISSAHLPG*LDGPHQ Trigger: CTGGTGTGGACCATCGAGTCATCCTGGGAGATGAGC...AGAGGAAATCACGGTTGGAGCTGGAGGAGCCGCCCCTCGTTCTGGCTGCTGCAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237228.2 |
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| 3UTR-3UTR CCA 90 bp | GGTGAAACGCCGGCACTCCTCAGGGGTCATGCCTGGCTTATAAGCTGCGTCCACTCCCAGACACTCCAGTaGGAGCTCAAAGCTGGCAGA | + |
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Preference number: 2 (lower is better) Translates to: GETPALLRGHAWLISCVHSQTLQ*ELKAGR Trigger: TCTGCCAGCTTTGAGCTCCCACTGGAGTGTCTGGGA...GTGGACGCAGCTTATAAGCCAGGCATGACCCCTGAGGAGTGCCGGCGTTTCACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237228.2 |
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| 3UTR CAA 90 bp | CTAACAAGTCCTCACGGTACTTGTAGGAGATGTTCTTCACCACGTTaGCAGCAGCCAGAACGAGGGGCGGCTCCTCCAGCTCCAACCGTG | + |
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Preference number: 2 (lower is better) Translates to: LTSPHGTCRRCSSPR*QQPERGAAPPAPTV Trigger: CACGGTTGGAGCTGGAGGAGCCGCCCCTCGTTCTGGCTGCTGCAAACGTGGTGAAGAACATCTCCTACAAGTACCGTGAGGACTTGTTAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237228.2 |
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| 3UTR-3UTR TCA 90 bp | GAAGGGACTTCTGGGGATCAGTCACTCATCGTAGAATTTTGGCAGCTCATCTCCAATGGAAGGGCATGCTaGTCTGGGCCGGGGAGGACG | + |
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Preference number: 2 (lower is better) Translates to: EGTSGDQSLIVEFWQLISNGRAC*SGPGRT Trigger: CGTCCTCCCCGGCCCAGATCAGCATGCCCTTCCATT...GGAGATGAGCTGCCAAAATTCTACGATGAGTGACTGATCCCCAGAAGTCCCTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000171321.2 ENSMUST00000237228.2 |
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| 3UTR-3UTR CCA 90 bp | CATGGCCAGAGTGATGGCATCTGTGGTGAAACGCCGGCACTCCTCAGGGGTCATATCGCACCGGCCTTCTaGTTCCAGAAAGTTTATTAC | + |
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Preference number: 2 (lower is better) Translates to: HGQSDGICGETPALLRGHIAPAF*FQKVYY Trigger: GTAATAAACTTTCTGGAACCAGAAGGCCGGTGCGAT...ATGACCCCTGAGGAGTGCCGGCGTTTCACCACAGATGCCATCACTCTGGCCATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237228.2 |
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| 3UTR-3UTR CCA 90 bp | AAGGAAGGGACTTCTGGGGATCAGTCACTCATCGTAGAATTTTGGCAGCTCATCCCCAGGATGACTCGATaGTCCACACCAGCAGCTGTG | + |
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Preference number: 2 (lower is better) Translates to: KEGTSGDQSLIVEFWQLIPRMTR*STPAAV Trigger: CACAGCTGCTGGTGTGGACCATCGAGTCATCCTGGG...GATGAGCTGCCAAAATTCTACGATGAGTGACTGATCCCCAGAAGTCCCTTCCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000171321.2 ENSMUST00000237228.2 |
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| 3UTR-3UTR CCA 90 bp | CTTTGCCCATCGCACCGGCCTTCTGGTTCCAGAAAGTTTATTACAAACAAGGAAATCGCACCGGCCTTCTaGTTCCAGAAAGTTTATTAC | + |
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Preference number: 2 (lower is better) Translates to: LCPSHRPSGSRKFITNKEIAPAF*FQKVYY Trigger: GTAATAAACTTTCTGGAACCAGAAGGCCGGTGCGAT...TTCCTTGTTTGTAATAAACTTTCTGGAACCAGAAGGCCGGTGCGATGGGCAAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000171321.2 ENSMUST00000174576.4 ENSMUST00000237228.2 |
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| 3UTR TCA 72 bp | AGCCAGAACGAGGGGCGGCTCCTCCAGCTCCAACCGTaGTTTCCTCTTCACAGACGCAGAACACTGGCTCCC | + |
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Preference number: 3 (lower is better) Translates to: SQNEGRLLQLQP*FPLHRRRTLAP Trigger: GGGAGCCAGTGTTCTGCGTCTGTGAAGAGGAAATCACGGTTGGAGCTGGAGGAGCCGCCCCTCGTTCTGGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237228.2 |
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| 3UTR CCA 72 bp | TCACAGACGCAGAACACTGGCTCCCAGACACTCCAGTaGGAGCTCAAAGCTGGCAGAGCCACGCAGTTGGGG | + |
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Preference number: 3 (lower is better) Translates to: SQTQNTGSQTLQ*ELKAGRATQLG Trigger: CCCCAACTGCGTGGCTCTGCCAGCTTTGAGCTCCCACTGGAGTGTCTGGGAGCCAGTGTTCTGCGTCTGTGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237228.2 |
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| 3UTR TCA 72 bp | CGGGGAGGACGCTTCCCTCCACACACCGTGTCTCTCTaGTACACATATTTCACCTTTGCCCATCGCACCGGC | + |
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Preference number: 3 (lower is better) Translates to: RGGRFPPHTVSL*YTYFTFAHRTG Trigger: GCCGGTGCGATGGGCAAAGGTGAAATATGTGTATCAGAGAGACACGGTGTGTGGAGGGAAGCGTCCTCCCCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000171321.2 ENSMUST00000174576.4 ENSMUST00000237228.2 |
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| 3UTR CCA 72 bp | TCCAACCGTGATTTCCTCTTCACAGACGCAGAACACTaGCTCCCAGACACTCCAGTGGGAGCTCAAAGCTGG | + |
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Preference number: 3 (lower is better) Translates to: SNRDFLFTDAEH*LPDTPVGAQSW Trigger: CCAGCTTTGAGCTCCCACTGGAGTGTCTGGGAGCCAGTGTTCTGCGTCTGTGAAGAGGAAATCACGGTTGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237228.2 |
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| 3UTR-3UTR CAA 90 bp | TCGGTTCATGGCCAGAGTGATGGCATCTGTGGTGAAACGCCGGCACTCCTCAGGACTCATCGTAGAATTTaGGCAGCTCATCTCCCAGGA | + |
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Preference number: 3 (lower is better) Translates to: SVHGQSDGICGETPALLRTHRRI*AAHLPG Trigger: TCCTGGGAGATGAGCTGCCAAAATTCTACGATGAGT...CCTGAGGAGTGCCGGCGTTTCACCACAGATGCCATCACTCTGGCCATGAACCGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237228.2 |
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| 3UTR CCA 72 bp | GGGACTTCTGGGGATCAGTCACTCATCGTAGAATTTTaGCAGCTCATCTCCCAGGATGACTCGATGGTCCAC | + |
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Preference number: 3 (lower is better) Translates to: GTSGDQSLIVEF*QLISQDDSMVH Trigger: GTGGACCATCGAGTCATCCTGGGAGATGAGCTGCCAAAATTCTACGATGAGTGACTGATCCCCAGAAGTCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000171321.2 ENSMUST00000237228.2 |
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| 3UTR-3UTR CAA 90 bp | GACTTCTGGGGATCAGTCACTCATCGTAGAATTTTGGCAGCTCATCTCCCAGGATGTTCTTCACCACGTTaGCAGCAGCCAGAACGAGGG | + |
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Preference number: 3 (lower is better) Translates to: DFWGSVTHRRILAAHLPGCSSPR*QQPERG Trigger: CCCTCGTTCTGGCTGCTGCAAACGTGGTGAAGAACA...TCCTGGGAGATGAGCTGCCAAAATTCTACGATGAGTGACTGATCCCCAGAAGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237228.2 |
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| 3UTR CCA 72 bp | TGTGGTGAAACGCCGGCACTCCTCAGGGGTCATGCCTaGCTTATAAGCTGCGTCCACATAACCATAAATGTA | + |
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Preference number: 3 (lower is better) Translates to: CGETPALLRGHA*LISCVHITINV Trigger: TACATTTATGGTTATGTGGACGCAGCTTATAAGCCAGGCATGACCCCTGAGGAGTGCCGGCGTTTCACCACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237228.2 |
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| CDS-3UTR TCA 90 bp | TTTACAAAAGAATGGAAGGGCATGCTGATCTGGGCCGGGGAGGACGCTTCCCTCGCTCATCTCCCAGGATaGCTCGATGGTCCACACCAG | + |
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Preference number: 4 (lower is better) Translates to: FTKEWKGMLIWAGEDASLAHLPG*LDGPHQ Trigger: CTGGTGTGGACCATCGAGTCATCCTGGGAGATGAGC...GAGGGAAGCGTCCTCCCCGGCCCAGATCAGCATGCCCTTCCATTCTTTTGTAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174576.4 |
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| CDS-3UTR GCA 90 bp | AGCTCATCTCCCAGGATGACTCGATGGTCCACACCAGCAGCTGTGATGGTGACCCCCGTCAAACTCCACTaGCATGATGGTTGTCCCGGT | + |
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Preference number: 4 (lower is better) Translates to: SSSPRMTRWSTPAAVMVTPVKLH*HDGCPG Trigger: ACCGGGACAACCATCATGGCAGTGGAGTTTGACGGG...GGTCACCATCACAGCTGCTGGTGTGGACCATCGAGTCATCCTGGGAGATGAGCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000237228.2 |
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| CDS-3UTR GCA 90 bp | TTTACAAAAGAATGGAAGGGCATGCTGATCTGGGCCGGGGAGGACGCTTCCCTCAGGGCACAGAAGATGTaGTGGTGCAGAGGGGAGAGC | + |
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Preference number: 4 (lower is better) Translates to: FTKEWKGMLIWAGEDASLRAQKM*WCRGES Trigger: GCTCTCCCCTCTGCACCAGCACATCTTCTGTGCCCT...GAGGGAAGCGTCCTCCCCGGCCCAGATCAGCATGCCCTTCCATTCTTTTGTAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000174576.4 ENSMUST00000237228.2 |
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| CDS-3UTR TCA 90 bp | CTCATCGTAGAATTTTGGCAGCTCATCTCCCAGGATGACTCGATGGTCCACACCCCCAGCCAGCTACTATaGGATGCGCTAACAAGTCCT | + |
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Preference number: 4 (lower is better) Translates to: LIVEFWQLISQDDSMVHTPSQLL*DALTSP Trigger: AGGACTTGTTAGCGCATCTCATAGTAGCTGGCTGGG...GGTGTGGACCATCGAGTCATCCTGGGAGATGAGCTGCCAAAATTCTACGATGAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171321.2 |
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| CDS-3UTR GCA 90 bp | AGTCCTCACGGTACTTGTAGGAGATGTTCTTCACCACGTTTGCAGCAGCCAGAACAGAAGATGTGCTGGTaGAGAGGGGAGAGCTTGTCG | + |
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Preference number: 4 (lower is better) Translates to: SPHGTCRRCSSPRLQQPEQKMCW*RGESLS Trigger: CGACAAGCTCTCCCCTCTGCACCAGCACATCTTCTG...TTCTGGCTGCTGCAAACGTGGTGAAGAACATCTCCTACAAGTACCGTGAGGACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237228.2 |
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| CDS-3UTR CCA 90 bp | GAAGGGACTTCTGGGGATCAGTCACTCATCGTAGAATTTTGGCAGCTCATCTCCGCACAGAAGATGTGCTaGTGCAGAGGGGAGAGCTTG | + |
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Preference number: 4 (lower is better) Translates to: EGTSGDQSLIVEFWQLISAQKMC*CRGESL Trigger: CAAGCTCTCCCCTCTGCACCAGCACATCTTCTGTGC...GGAGATGAGCTGCCAAAATTCTACGATGAGTGACTGATCCCCAGAAGTCCCTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000237228.2 |
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| CDS-3UTR CCA 90 bp | CACCTTTGCCCATCGCACCGGCCTTCTGGTTCCAGAAAGTTTATTACAAACAAGCCCAGGATGACTCGATaGTCCACACCAGCAGCTGTG | + |
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Preference number: 4 (lower is better) Translates to: HLCPSHRPSGSRKFITNKPRMTR*STPAAV Trigger: CACAGCTGCTGGTGTGGACCATCGAGTCATCCTGGG...CTTGTTTGTAATAAACTTTCTGGAACCAGAAGGCCGGTGCGATGGGCAAAGGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174576.4 |
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| CDS-3UTR GCA 90 bp | ACCTTTGCCCATCGCACCGGCCTTCTGGTTCCAGAAAGTTTATTACAAACAAGGCAGAAGATGTGCTGGTaGAGAGGGGAGAGCTTGTCG | + |
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Preference number: 4 (lower is better) Translates to: TFAHRTGLLVPESLLQTRQKMCW*RGESLS Trigger: CGACAAGCTCTCCCCTCTGCACCAGCACATCTTCTG...CCTTGTTTGTAATAAACTTTCTGGAACCAGAAGGCCGGTGCGATGGGCAAAGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000174576.4 ENSMUST00000237228.2 |
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| CDS-3UTR TCA 90 bp | CACCTTTGCCCATCGCACCGGCCTTCTGGTTCCAGAAAGTTTATTACAAACAAGCCCAGCCAGCTACTATaGGATGCGCTAACAAGTCCT | + |
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Preference number: 4 (lower is better) Translates to: HLCPSHRPSGSRKFITNKPSQLL*DALTSP Trigger: AGGACTTGTTAGCGCATCTCATAGTAGCTGGCTGGG...CTTGTTTGTAATAAACTTTCTGGAACCAGAAGGCCGGTGCGATGGGCAAAGGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171321.2 ENSMUST00000174576.4 |
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| CDS-3UTR GCA 90 bp | TTTGCCCATCGCACCGGCCTTCTGGTTCCAGAAAGTTTATTACAAACAAGGAAGCCCGTCAAACTCCACTaGCATGATGGTTGTCCCGGT | + |
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Preference number: 4 (lower is better) Translates to: FAHRTGLLVPESLLQTRKPVKLH*HDGCPG Trigger: ACCGGGACAACCATCATGGCAGTGGAGTTTGACGGG...CTTCCTTGTTTGTAATAAACTTTCTGGAACCAGAAGGCCGGTGCGATGGGCAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174576.4 ENSMUST00000237228.2 |
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| CDS-3UTR CCA 90 bp | TTTGCCCATCGCACCGGCCTTCTGGTTCCAGAAAGTTTATTACAAACAAGGAAGGCACAGAAGATGTGCTaGTGCAGAGGGGAGAGCTTG | + |
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Preference number: 4 (lower is better) Translates to: FAHRTGLLVPESLLQTRKAQKMC*CRGESL Trigger: CAAGCTCTCCCCTCTGCACCAGCACATCTTCTGTGC...CTTCCTTGTTTGTAATAAACTTTCTGGAACCAGAAGGCCGGTGCGATGGGCAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000174576.4 ENSMUST00000237228.2 |
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| CDS-3UTR CCA 90 bp | CACCTTTGCCCATCGCACCGGCCTTCTGGTTCCAGAAAGTTTATTACAAACAAGATGTCAGCTATGGCTTaGGCATCAGCAGCGGAACCT | + |
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Preference number: 4 (lower is better) Translates to: HLCPSHRPSGSRKFITNKMSAMA*ASAAEP Trigger: AGGTTCCGCTGCTGATGCCCAAGCCATAGCTGACAT...CTTGTTTGTAATAAACTTTCTGGAACCAGAAGGCCGGTGCGATGGGCAAAGGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174576.4 ENSMUST00000237228.2 |
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| CDS-3UTR CCA 90 bp | ACTTCTGGGGATCAGTCACTCATCGTAGAATTTTGGCAGCTCATCTCCCAGGATATGTCAGCTATGGCTTaGGCATCAGCAGCGGAACCT | + |
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Preference number: 4 (lower is better) Translates to: TSGDQSLIVEFWQLISQDMSAMA*ASAAEP Trigger: AGGTTCCGCTGCTGATGCCCAAGCCATAGCTGACAT...ATCCTGGGAGATGAGCTGCCAAAATTCTACGATGAGTGACTGATCCCCAGAAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237228.2 |
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| CDS-3UTR CCA 90 bp | TTTGCCCATCGCACCGGCCTTCTGGTTCCAGAAAGTTTATTACAAACAAGGAAGCTCATCGTAGAATTTTaGCAGCTCATCTCCCAGGAT | + |
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Preference number: 4 (lower is better) Translates to: FAHRTGLLVPESLLQTRKLIVEF*QLISQD Trigger: ATCCTGGGAGATGAGCTGCCAAAATTCTACGATGAG...CTTCCTTGTTTGTAATAAACTTTCTGGAACCAGAAGGCCGGTGCGATGGGCAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174576.4 |
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| CDS-3UTR GCA 90 bp | TTTGCCCATCGCACCGGCCTTCTGGTTCCAGAAAGTTTATTACAAACAAGGAAGGCCTGGCTTATAAGCTaGGTCCACATAACCATAAAT | + |
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Preference number: 4 (lower is better) Translates to: FAHRTGLLVPESLLQTRKAWLIS*VHITIN Trigger: ATTTATGGTTATGTGGACGCAGCTTATAAGCCAGGC...CTTCCTTGTTTGTAATAAACTTTCTGGAACCAGAAGGCCGGTGCGATGGGCAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174576.4 |
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| CDS TCA 90 bp | GGGAATCAGAGCCCACCACGACACCCCCGTCAAACTCCACTGCCATaGTGGTTGTCCCGGTGTGGACTTCTTCCGTCCGGAACGAGCCGG | + |
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Preference number: 5 (lower is better) Translates to: GNQSPPRHPRQTPLP*WLSRCGLLPSGTSR Trigger: CCGGCTCGTTCCGGACGGAAGAAGTCCACACCGGGACAACCATCATGGCAGTGGAGTTTGACGGGGGTGTCGTGGTGGGCTCTGATTCCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000174576.4 ENSMUST00000237228.2 |
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| CDS GCA 90 bp | CACCCGGGAATCAGAGCCCACCACGACACCCCCGTCAAACTCCACTaGCATGATGGTTGTCCCGGTGTGGACTTCTTCCGTCCGGAACGA | + |
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Preference number: 5 (lower is better) Translates to: HPGIRAHHDTPVKLH*HDGCPGVDFFRPER Trigger: TCGTTCCGGACGGAAGAAGTCCACACCGGGACAACCATCATGGCAGTGGAGTTTGACGGGGGTGTCGTGGTGGGCTCTGATTCCCGGGTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000174576.4 ENSMUST00000237228.2 |
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| CDS-3UTR CAA 90 bp | ATCGTAGAATTTTGGCAGCTCATCTCCCAGGATGACTCGATGGTCCACACCAGCCATGTCAGCTATGGCTaGGGCATCAGCAGCGGAACC | + |
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Preference number: 5 (lower is better) Translates to: IVEFWQLISQDDSMVHTSHVSYG*GISSGT Trigger: GGTTCCGCTGCTGATGCCCAAGCCATAGCTGACATG...GCTGGTGTGGACCATCGAGTCATCCTGGGAGATGAGCTGCCAAAATTCTACGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237228.2 |
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| CDS-3UTR CAA 90 bp | CACCTTTGCCCATCGCACCGGCCTTCTGGTTCCAGAAAGTTTATTACAAACAAGCATGTCAGCTATGGCTaGGGCATCAGCAGCGGAACC | + |
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Preference number: 5 (lower is better) Translates to: HLCPSHRPSGSRKFITNKHVSYG*GISSGT Trigger: GGTTCCGCTGCTGATGCCCAAGCCATAGCTGACATG...CTTGTTTGTAATAAACTTTCTGGAACCAGAAGGCCGGTGCGATGGGCAAAGGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000174576.4 ENSMUST00000237228.2 |
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| CDS-3UTR CAA 90 bp | AAGGAAGGGACTTCTGGGGATCAGTCACTCATCGTAGAATTTTGGCAGCTCATCTGTTCTTCACCACGTTaGCAGCAGCCAGAACGAGGG | + |
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Preference number: 5 (lower is better) Translates to: KEGTSGDQSLIVEFWQLICSSPR*QQPERG Trigger: CCCTCGTTCTGGCTGCTGCAAACGTGGTGAAGAACA...GATGAGCTGCCAAAATTCTACGATGAGTGACTGATCCCCAGAAGTCCCTTCCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171321.2 |
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| CDS-3UTR CAA 90 bp | TTTGCCCATCGCACCGGCCTTCTGGTTCCAGAAAGTTTATTACAAACAAGGAAGTGTTCTTCACCACGTTaGCAGCAGCCAGAACGAGGG | + |
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Preference number: 5 (lower is better) Translates to: FAHRTGLLVPESLLQTRKCSSPR*QQPERG Trigger: CCCTCGTTCTGGCTGCTGCAAACGTGGTGAAGAACA...CTTCCTTGTTTGTAATAAACTTTCTGGAACCAGAAGGCCGGTGCGATGGGCAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171321.2 ENSMUST00000174576.4 |
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| CDS-3UTR CAA 90 bp | TTTGCCCATCGCACCGGCCTTCTGGTTCCAGAAAGTTTATTACAAACAAGGAAGACTCATCGTAGAATTTaGGCAGCTCATCTCCCAGGA | + |
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Preference number: 5 (lower is better) Translates to: FAHRTGLLVPESLLQTRKTHRRI*AAHLPG Trigger: TCCTGGGAGATGAGCTGCCAAAATTCTACGATGAGT...CTTCCTTGTTTGTAATAAACTTTCTGGAACCAGAAGGCCGGTGCGATGGGCAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174576.4 |
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| CDS TCA 72 bp | CTTGTCGAACACGCGGTTCACCACTGCTGTTCCCGCTaGCACCCGGGAATCAGAGCCCACCACGACACCCCC | + |
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Preference number: 6 (lower is better) Translates to: LVEHAVHHCCSR*HPGIRAHHDTP Trigger: GGGGGTGTCGTGGTGGGCTCTGATTCCCGGGTGTCAGCGGGAACAGCAGTGGTGAACCGCGTGTTCGACAAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000173831.3 ENSMUST00000174576.4 ENSMUST00000237228.2 |
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| CDS CCA 72 bp | CGTGTAGCTCCAGCTGGTAGGCGGCCATGTCAGCTATaGCTTGGGCATCAGCAGCGGAACCTGAGAGGGCAC | + |
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Preference number: 6 (lower is better) Translates to: RVAPAGRRPCQL*LGHQQRNLRGH Trigger: GTGCCCTCTCAGGTTCCGCTGCTGATGCCCAAGCCATAGCTGACATGGCCGCCTACCAGCTGGAGCTACACG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000173831.3 ENSMUST00000174576.4 ENSMUST00000237228.2 |
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| CDS GCA 72 bp | GCAGCGGAACCTGAGAGGGCACAGAAGATGTGCTGGTaGAGAGGGGAGAGCTTGTCGAACACGCGGTTCACC | + |
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Preference number: 6 (lower is better) Translates to: AAEPERAQKMCW*RGESLSNTRFT Trigger: GGTGAACCGCGTGTTCGACAAGCTCTCCCCTCTGCACCAGCACATCTTCTGTGCCCTCTCAGGTTCCGCTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000173831.3 ENSMUST00000174576.4 ENSMUST00000237228.2 |
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| CDS CCA 72 bp | TCAGCAGCGGAACCTGAGAGGGCACAGAAGATGTGCTaGTGCAGAGGGGAGAGCTTGTCGAACACGCGGTTC | + |
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Preference number: 6 (lower is better) Translates to: SAAEPERAQKMC*CRGESLSNTRF Trigger: GAACCGCGTGTTCGACAAGCTCTCCCCTCTGCACCAGCACATCTTCTGTGCCCTCTCAGGTTCCGCTGCTGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000173831.3 ENSMUST00000174576.4 ENSMUST00000237228.2 |
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| CDS CAA 90 bp | CTAACAAGTCCTCACGGTACTTGTAGGAGATGTTCTTCACCACGTTaGCAGCAGCCAGAACGAGGGGCGGCTCCTCCAGCTCCAACCCGT | + |
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Preference number: 6 (lower is better) Translates to: LTSPHGTCRRCSSPR*QQPERGAAPPAPTR Trigger: ACGGGTTGGAGCTGGAGGAGCCGCCCCTCGTTCTGGCTGCTGCAAACGTGGTGAAGAACATCTCCTACAAGTACCGTGAGGACTTGTTAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174576.4 |
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