Pregenerated sensors for PSMB8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024338Ensembl transcript IDs: ENSMUST00000025196.9, ENSMUST00000173441.9, ENSMUST00000236331.2
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | AGGGTAAACAGAGCTTTGTCTCCAGCCCAGGTTGAGCCCTTCTTTTTCCTAAGAGAGTCTGCCAGCCAGTaGCACCAATGCTGGGGGAGG | + |
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Preference number: 2 (lower is better) Translates to: RVNRALSPAQVEPFFFLRESASQ*HQCWGR Trigger: CCTCCCCCAGCATTGGTGGCACTGGCTGGCAGACTC...TCTTAGGAAAAAGAAGGGCTCAACCTGGGCTGGAGACAAAGCTCTGTTTACCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000025196.9 |
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| 3UTR TCA 72 bp | CTTCTTTTTCCTAAGACTGAAGTAGTCCCAGGTCTCTaGGTCTGCCAGCCAGTGCCACCAATGCTGGGGGAG | + |
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Preference number: 3 (lower is better) Translates to: LLFPKTEVVPGL*VCQPVPPMLGE Trigger: CTCCCCCAGCATTGGTGGCACTGGCTGGCAGACTCAGAGACCTGGGACTACTTCAGTCTTAGGAAAAAGAAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000025196.9 |
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| 3UTR TCA 72 bp | ACAGAGCGGCCTCTCCGTACTTGTACAGCAGGTCACTaGCATCGGAACTCTCCACTTTCACCCAACCGTCTT | + |
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Preference number: 3 (lower is better) Translates to: TERPLRTCTAGH*HRNSPLSPNRL Trigger: AAGACGGTTGGGTGAAAGTGGAGAGTTCCGATGTCAGTGACCTGCTGTACAAGTACGGAGAGGCCGCTCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236331.2 |
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| 3UTR TCA 72 bp | CGAGAGGGTAAACAGAGCTTTGTCTCCAGCCCAGGTTaGGCCCTTCTTTTTCCTAAGACTGAAGTAGTCCCA | + |
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Preference number: 3 (lower is better) Translates to: REGKQSFVSSPG*ALLFPKTEVVP Trigger: TGGGACTACTTCAGTCTTAGGAAAAAGAAGGGCTCAACCTGGGCTGGAGACAAAGCTCTGTTTACCCTCTCG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025196.9 |
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| CDS-3UTR CCA 90 bp | CCCAGGTCTCTGAGTCTGCCAGCCAGTGCCACCAATGCTGGGGGAGGCCTGCCCTGTAACTCCCTGCAGTaGCCCTGGAGTCCACAGCCA | + |
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Preference number: 4 (lower is better) Translates to: PRSLSLPASATNAGGGLPCNSLQ*PWSPQP Trigger: TGGCTGTGGACTCCAGGGCCACTGCAGGGAGTTACA...GGGCAGGCCTCCCCCAGCATTGGTGGCACTGGCTGGCAGACTCAGAGACCTGGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025196.9 |
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| CDS-3UTR GCA 90 bp | CCCAGGTCTCTGAGTCTGCCAGCCAGTGCCACCAATGCTGGGGGAGGCCTGCCCGCCACGATGACGCCATaGTGGAACTTGAAGGCGAGT | + |
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Preference number: 4 (lower is better) Translates to: PRSLSLPASATNAGGGLPATMTP*WNLKAS Trigger: ACTCGCCTTCAAGTTCCAGCATGGCGTCATCGTGGC...GGGCAGGCCTCCCCCAGCATTGGTGGCACTGGCTGGCAGACTCAGAGACCTGGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025196.9 |
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| CDS-3UTR GCA 90 bp | GTCTCTGAGTCTGCCAGCCAGTGCCACCAATGCTGGGGGAGGCCTGCCCAGCAGGTACTGGCAGTCGGCTaGACAACCAGACATGGTGCC | + |
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Preference number: 4 (lower is better) Translates to: VSESASQCHQCWGRPAQQVLAVG*TTRHGA Trigger: GGCACCATGTCTGGTTGTGCAGCCGACTGCCAGTAC...CTGCTGGGCAGGCCTCCCCCAGCATTGGTGGCACTGGCTGGCAGACTCAGAGAC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025196.9 |
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| CDS-3UTR GCA 90 bp | CCCAGGTCTCTGAGTCTGCCAGCCAGTGCCACCAATGCTGGGGGAGGCCTGCCCCCCATCCCCCGGTACTaGAGCATCATGTTGGAAAGC | + |
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Preference number: 4 (lower is better) Translates to: PRSLSLPASATNAGGGLPPIPRY*SIMLES Trigger: GCTTTCCAACATGATGCTGCAGTACCGGGGGATGGG...GGGCAGGCCTCCCCCAGCATTGGTGGCACTGGCTGGCAGACTCAGAGACCTGGG 63% GC, longest homopolymer 6 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000025196.9 |
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| CDS-3UTR CCA 90 bp | CCCAGGTCTCTGAGTCTGCCAGCCAGTGCCACCAATGCTGGGGGAGGCCTGCCCACAACCTGCACTCCTTaGCCAACAGCCTCTCCCAGT | + |
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Preference number: 4 (lower is better) Translates to: PRSLSLPASATNAGGGLPTTCTP*PTASPS Trigger: ACTGGGAGAGGCTGTTGGCCAAGGAGTGCAGGTTGT...GGGCAGGCCTCCCCCAGCATTGGTGGCACTGGCTGGCAGACTCAGAGACCTGGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025196.9 |
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| CDS-3UTR GCA 90 bp | CCCAGGTCTCTGAGTCTGCCAGCCAGTGCCACCAATGCTGGGGGAGGCCTGCCCAGGCGAGTGTGGTTGTaGCGTGGGCCATCTCAATTT | + |
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Preference number: 4 (lower is better) Translates to: PRSLSLPASATNAGGGLPRRVWL*RGPSQF Trigger: AAATTGAGATGGCCCACGGCACAACCACACTCGCCT...GGGCAGGCCTCCCCCAGCATTGGTGGCACTGGCTGGCAGACTCAGAGACCTGGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025196.9 |
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| CDS-3UTR GCA 90 bp | GTCTCTGAGTCTGCCAGCCAGTGCCACCAATGCTGGGGGAGGCCTGCCCAGCAGGCTAATGTAACTCCCTaGAGTGGCCCTGGAGTCCAC | + |
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Preference number: 4 (lower is better) Translates to: VSESASQCHQCWGRPAQQANVTP*SGPGVH Trigger: GTGGACTCCAGGGCCACTGCAGGGAGTTACATTAGC...CTGCTGGGCAGGCCTCCCCCAGCATTGGTGGCACTGGCTGGCAGACTCAGAGAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025196.9 |
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| CDS-3UTR CCA 90 bp | GTCTCTGAGTCTGCCAGCCAGTGCCACCAATGCTGGGGGAGGCCTGCCCAGCAGTGTTGGAAAGCAGCTTaGATGCTGCAGACACGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: VSESASQCHQCWGRPAQQCWKAA*MLQTRR Trigger: TCTCCGTGTCTGCAGCATCCAAGCTGCTTTCCAACA...CTGCTGGGCAGGCCTCCCCCAGCATTGGTGGCACTGGCTGGCAGACTCAGAGAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025196.9 |
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| CDS-3UTR TCA 90 bp | CCCAGGTCTCTGAGTCTGCCAGCCAGTGCCACCAATGCTGGGGGAGGCCTGCCCTGGGCCATCTCAATTTaGACATTCCTTTCCTGGTCA | + |
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Preference number: 4 (lower is better) Translates to: PRSLSLPASATNAGGGLPWAISI*TFLSWS Trigger: TGACCAGGAAAGGAATGTTCAAATTGAGATGGCCCA...GGGCAGGCCTCCCCCAGCATTGGTGGCACTGGCTGGCAGACTCAGAGACCTGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025196.9 |
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| CDS-3UTR TCA 90 bp | GGGGCCGAGAGGGTAAACAGAGCTTTGTCTCCAGCCCAGGTTGAGCCCTTCTTTAGGCCTCTTCAGGACTaGGGTCCTGCCGGTAACCAC | + |
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Preference number: 4 (lower is better) Translates to: GAERVNRALSPAQVEPFFRPLQD*GPAGNH Trigger: GTGGTTACCGGCAGGACCTCAGTCCTGAAGAGGCCT...AAAGAAGGGCTCAACCTGGGCTGGAGACAAAGCTCTGTTTACCCTCTCGGCCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025196.9 |
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| CDS-3UTR GCA 90 bp | GTCTCTGAGTCTGCCAGCCAGTGCCACCAATGCTGGGGGAGGCCTGCCCAGCAGGAAGATAATACAACCTaGACTCCTTGGCCAACAGCC | + |
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Preference number: 4 (lower is better) Translates to: VSESASQCHQCWGRPAQQEDNTT*TPWPTA Trigger: GGCTGTTGGCCAAGGAGTGCAGGTTGTATTATCTTC...CTGCTGGGCAGGCCTCCCCCAGCATTGGTGGCACTGGCTGGCAGACTCAGAGAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025196.9 |
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| CDS-3UTR CCA 90 bp | GGGGCCGAGAGGGTAAACAGAGCTTTGTCTCCAGCCCAGGTTGAGCCCTTCTTTAGATCATGCTGCCCATaGAGAGGCCCATCCCCCGGT | + |
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Preference number: 4 (lower is better) Translates to: GAERVNRALSPAQVEPFFRSCCP*RGPSPG Trigger: ACCGGGGGATGGGCCTCTCCATGGGCAGCATGATCT...AAAGAAGGGCTCAACCTGGGCTGGAGACAAAGCTCTGTTTACCCTCTCGGCCCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025196.9 |
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| CDS-3UTR CCA 90 bp | GGGGCCGAGAGGGTAAACAGAGCTTTGTCTCCAGCCCAGGTTGAGCCCTTCTTTCTGCACAACCAGACATaGTGCCAAGCAGGTAAGGGT | + |
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Preference number: 4 (lower is better) Translates to: GAERVNRALSPAQVEPFFLHNQT*CQAGKG Trigger: ACCCTTACCTGCTTGGCACCATGTCTGGTTGTGCAG...AAAGAAGGGCTCAACCTGGGCTGGAGACAAAGCTCTGTTTACCCTCTCGGCCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025196.9 |
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| CDS-3UTR CCA 90 bp | TCTCCGTACTTGTACAGCAGGTCACTGACATCGGAACTCTCCACTTTCACCCAAAGATCATGCTGCCCATaGAGAGGCCCATCCCCCGGT | + |
|
Preference number: 4 (lower is better) Translates to: SPYLYSRSLTSELSTFTQRSCCP*RGPSPG Trigger: ACCGGGGGATGGGCCTCTCCATGGGCAGCATGATCT...TTGGGTGAAAGTGGAGAGTTCCGATGTCAGTGACCTGCTGTACAAGTACGGAGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236331.2 |
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| CDS-3UTR CCA 90 bp | GGGGCCGAGAGGGTAAACAGAGCTTTGTCTCCAGCCCAGGTTGAGCCCTTCTTTTACGTAGTAAAGTCCTaGTCCCTTCTTGTCCCAGCC | + |
|
Preference number: 4 (lower is better) Translates to: GAERVNRALSPAQVEPFFYVVKS*SLLVPA Trigger: GGCTGGGACAAGAAGGGACCAGGACTTTACTACGTA...AAAGAAGGGCTCAACCTGGGCTGGAGACAAAGCTCTGTTTACCCTCTCGGCCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025196.9 |
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| CDS-3UTR CCA 90 bp | TTGTACAGCAGGTCACTGACATCGGAACTCTCCACTTTCACCCAACCGTCTTCCACAACCTGCACTCCTTaGCCAACAGCCTCTCCCAGT | + |
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Preference number: 4 (lower is better) Translates to: LYSRSLTSELSTFTQPSSTTCTP*PTASPS Trigger: ACTGGGAGAGGCTGTTGGCCAAGGAGTGCAGGTTGT...GGAAGACGGTTGGGTGAAAGTGGAGAGTTCCGATGTCAGTGACCTGCTGTACAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236331.2 |
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| CDS-3UTR GCA 90 bp | AGGGTAAACAGAGCTTTGTCTCCAGCCCAGGTTGAGCCCTTCTTTTTCCTAAGAAAAGGACCTCAGGAATaGGGTGGGCTGCATTCCCCG | + |
|
Preference number: 4 (lower is better) Translates to: RVNRALSPAQVEPFFFLRKGPQE*GGLHSP Trigger: CGGGGAATGCAGCCCACCGCATTCCTGAGGTCCTTT...TCTTAGGAAAAAGAAGGGCTCAACCTGGGCTGGAGACAAAGCTCTGTTTACCCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025196.9 |
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| CDS-3UTR GCA 90 bp | TCTCCGTACTTGTACAGCAGGTCACTGACATCGGAACTCTCCACTTTCACCCAACCCATCCCCCGGTACTaGAGCATCATGTTGGAAAGC | + |
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Preference number: 4 (lower is better) Translates to: SPYLYSRSLTSELSTFTQPIPRY*SIMLES Trigger: GCTTTCCAACATGATGCTGCAGTACCGGGGGATGGG...TTGGGTGAAAGTGGAGAGTTCCGATGTCAGTGACCTGCTGTACAAGTACGGAGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236331.2 |
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| CDS-3UTR CCA 90 bp | GTACTTGTACAGCAGGTCACTGACATCGGAACTCTCCACTTTCACCCAACCGTCCTGCACAACCAGACATaGTGCCAAGCAGGTAAGGGT | + |
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Preference number: 4 (lower is better) Translates to: VLVQQVTDIGTLHFHPTVLHNQT*CQAGKG Trigger: ACCCTTACCTGCTTGGCACCATGTCTGGTTGTGCAG...GACGGTTGGGTGAAAGTGGAGAGTTCCGATGTCAGTGACCTGCTGTACAAGTAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236331.2 |
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| CDS-3UTR GCA 90 bp | TTGTACAGCAGGTCACTGACATCGGAACTCTCCACTTTCACCCAACCGTCTTCCGAAGATAATACAACCTaGACTCCTTGGCCAACAGCC | + |
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Preference number: 4 (lower is better) Translates to: LYSRSLTSELSTFTQPSSEDNTT*TPWPTA Trigger: GGCTGTTGGCCAAGGAGTGCAGGTTGTATTATCTTC...GGAAGACGGTTGGGTGAAAGTGGAGAGTTCCGATGTCAGTGACCTGCTGTACAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236331.2 |
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| CDS-3UTR CCA 90 bp | TACTTGTACAGCAGGTCACTGACATCGGAACTCTCCACTTTCACCCAACCGTCTTGTTGGAAAGCAGCTTaGATGCTGCAGACACGGAGA | + |
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Preference number: 4 (lower is better) Translates to: YLYSRSLTSELSTFTQPSCWKAA*MLQTRR Trigger: TCTCCGTGTCTGCAGCATCCAAGCTGCTTTCCAACA...AGACGGTTGGGTGAAAGTGGAGAGTTCCGATGTCAGTGACCTGCTGTACAAGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236331.2 |
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| CDS-3UTR GCA 90 bp | AGGGTAAACAGAGCTTTGTCTCCAGCCCAGGTTGAGCCCTTCTTTTTCCTAAGACATAGGTGTTCCCGCTaGCAGTGGAAAACATCTGTC | + |
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Preference number: 4 (lower is better) Translates to: RVNRALSPAQVEPFFFLRHRCSR*QWKTSV Trigger: GACAGATGTTTTCCACTGGCAGCGGGAACACCTATG...TCTTAGGAAAAAGAAGGGCTCAACCTGGGCTGGAGACAAAGCTCTGTTTACCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025196.9 |
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| CDS-3UTR CAA 90 bp | CCCAGGTCTCTGAGTCTGCCAGCCAGTGCCACCAATGCTGGGGGAGGCCTGCCCTGCGAGCTCCGGAGCTaGCGCGGAGAAACTGTAGTG | + |
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Preference number: 5 (lower is better) Translates to: PRSLSLPASATNAGGGLPCELRS*RGETVV Trigger: CACTACAGTTTCTCCGCGCAAGCTCCGGAGCTCGCA...GGGCAGGCCTCCCCCAGCATTGGTGGCACTGGCTGGCAGACTCAGAGACCTGGG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025196.9 |
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| CDS-3UTR CAA 90 bp | CCCAGGTCTCTGAGTCTGCCAGCCAGTGCCACCAATGCTGGGGGAGGCCTGCCCACGCCATGCTGGAACTaGAAGGCGAGTGTGGTTGTG | + |
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Preference number: 5 (lower is better) Translates to: PRSLSLPASATNAGGGLPTPCWN*KASVVV Trigger: CACAACCACACTCGCCTTCAAGTTCCAGCATGGCGT...GGGCAGGCCTCCCCCAGCATTGGTGGCACTGGCTGGCAGACTCAGAGACCTGGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025196.9 |
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| CDS-3UTR CAA 90 bp | CCCAGGTCTCTGAGTCTGCCAGCCAGTGCCACCAATGCTGGGGGAGGCCTGCCCAGTCCTGGTCCCTTCTaGTCCCAGCCACAGATCATG | + |
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Preference number: 5 (lower is better) Translates to: PRSLSLPASATNAGGGLPSPGPF*SQPQIM Trigger: CATGATCTGTGGCTGGGACAAGAAGGGACCAGGACT...GGGCAGGCCTCCCCCAGCATTGGTGGCACTGGCTGGCAGACTCAGAGACCTGGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025196.9 |
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| CDS-3UTR CAA 90 bp | GTCTCTGAGTCTGCCAGCCAGTGCCACCAATGCTGGGGGAGGCCTGCCCAGCAGGCGGCCTCTCCGTACTaGTACAGCAGGTCACTGACA | + |
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Preference number: 5 (lower is better) Translates to: VSESASQCHQCWGRPAQQAASPY*YSRSLT Trigger: TGTCAGTGACCTGCTGTACAAGTACGGAGAGGCCGC...CTGCTGGGCAGGCCTCCCCCAGCATTGGTGGCACTGGCTGGCAGACTCAGAGAC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025196.9 |
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| CDS CCA 90 bp | GAACATTCCTTTCCTGGTCACCACCAAAGGACCTCAGGAATGCGGTaGGCTGCATTCCCCGGGGAAGTGCGAGCTCCGGAGCTTGCGCGG | + |
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Preference number: 5 (lower is better) Translates to: EHSFPGHHQRTSGMR*AAFPGEVRAPELAR Trigger: CCGCGCAAGCTCCGGAGCTCGCACTTCCCCGGGGAATGCAGCCCACCGCATTCCTGAGGTCCTTTGGTGGTGACCAGGAAAGGAATGTTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025196.9 ENSMUST00000173441.9 |
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| CDS-3UTR CAA 90 bp | CCCAGGTCTCTGAGTCTGCCAGCCAGTGCCACCAATGCTGGGGGAGGCCTGCCCTACTGCAGCATCATGTaGGAAAGCAGCTTGGATGCT | + |
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Preference number: 5 (lower is better) Translates to: PRSLSLPASATNAGGGLPYCSIM*ESSLDA Trigger: AGCATCCAAGCTGCTTTCCAACATGATGCTGCAGTA...GGGCAGGCCTCCCCCAGCATTGGTGGCACTGGCTGGCAGACTCAGAGACCTGGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025196.9 |
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| CDS GCA 90 bp | GCCGGTAACCACTGTCCATCACCCCATAGGCATAGGTGTTCCCGCTaGCAGTGGAAAACATCTGTCCCGAGAGCCGAGTCCCATTGTCAT | + |
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Preference number: 5 (lower is better) Translates to: AGNHCPSPHRHRCSR*QWKTSVPRAESHCH Trigger: ATGACAATGGGACTCGGCTCTCGGGACAGATGTTTTCCACTGGCAGCGGGAACACCTATGCCTATGGGGTGATGGACAGTGGTTACCGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025196.9 ENSMUST00000173441.9 |
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| CDS-3UTR CAA 90 bp | GGGGCCGAGAGGGTAAACAGAGCTTTGTCTCCAGCCCAGGTTGAGCCCTTCTTTATGTTGGAAAGCAGCTaGGATGCTGCAGACACGGAG | + |
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Preference number: 5 (lower is better) Translates to: GAERVNRALSPAQVEPFFMLESS*DAADTE Trigger: CTCCGTGTCTGCAGCATCCAAGCTGCTTTCCAACAT...AAAGAAGGGCTCAACCTGGGCTGGAGACAAAGCTCTGTTTACCCTCTCGGCCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025196.9 |
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| CDS CCA 90 bp | AACCACTGTCCATCACCCCATAGGCATAGGTGTTCCCGCTGCCAGTaGAAAACATCTGTCCCGAGAGCCGAGTCCCATTGTCATCTACGT | + |
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Preference number: 5 (lower is better) Translates to: NHCPSPHRHRCSRCQ*KTSVPRAESHCHLR Trigger: ACGTAGATGACAATGGGACTCGGCTCTCGGGACAGATGTTTTCCACTGGCAGCGGGAACACCTATGCCTATGGGGTGATGGACAGTGGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025196.9 ENSMUST00000173441.9 |
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| CDS GCA 90 bp | GCAGCATCATGTTGGAAAGCAGCTTGGATGCTGCAGACACGGAGATaGGTTCCCCATTCCGAAGATAATACAACCTGCACTCCTTGGCCA | + |
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Preference number: 5 (lower is better) Translates to: AASCWKAAWMLQTRR*VPHSEDNTTCTPWP Trigger: TGGCCAAGGAGTGCAGGTTGTATTATCTTCGGAATGGGGAACGCATCTCCGTGTCTGCAGCATCCAAGCTGCTTTCCAACATGATGCTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000025196.9 ENSMUST00000173441.9 ENSMUST00000236331.2 |
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| CDS-3UTR CAA 90 bp | GTACTTGTACAGCAGGTCACTGACATCGGAACTCTCCACTTTCACCCAACCGTCATGTTGGAAAGCAGCTaGGATGCTGCAGACACGGAG | + |
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Preference number: 5 (lower is better) Translates to: VLVQQVTDIGTLHFHPTVMLESS*DAADTE Trigger: CTCCGTGTCTGCAGCATCCAAGCTGCTTTCCAACAT...GACGGTTGGGTGAAAGTGGAGAGTTCCGATGTCAGTGACCTGCTGTACAAGTAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236331.2 |
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| CDS-3UTR CAA 90 bp | GGCCTCTCCGTACTTGTACAGCAGGTCACTGACATCGGAACTCTCCACTTTCACCATGTGGTACACTTCTaGTCCCAGCCACAGATCATG | + |
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Preference number: 5 (lower is better) Translates to: GLSVLVQQVTDIGTLHFHHVVHF*SQPQIM Trigger: CATGATCTGTGGCTGGGACAAGAAGTGTACCACATG...GTGAAAGTGGAGAGTTCCGATGTCAGTGACCTGCTGTACAAGTACGGAGAGGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236331.2 |
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| CDS-3UTR CAA 90 bp | TCTCCGTACTTGTACAGCAGGTCACTGACATCGGAACTCTCCACTTTCACCCAATACTGCAGCATCATGTaGGAAAGCAGCTTGGATGCT | + |
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Preference number: 5 (lower is better) Translates to: SPYLYSRSLTSELSTFTQYCSIM*ESSLDA Trigger: AGCATCCAAGCTGCTTTCCAACATGATGCTGCAGTA...TTGGGTGAAAGTGGAGAGTTCCGATGTCAGTGACCTGCTGTACAAGTACGGAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236331.2 |
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| CDS-3UTR CAA 90 bp | AGGGTAAACAGAGCTTTGTCTCCAGCCCAGGTTGAGCCCTTCTTTTTCCTAAGAGTGGGCCATCTCAATTaGAACATTCCTTTCCTGGTC | + |
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Preference number: 5 (lower is better) Translates to: RVNRALSPAQVEPFFFLRVGHLN*NIPFLV Trigger: GACCAGGAAAGGAATGTTCAAATTGAGATGGCCCAC...TCTTAGGAAAAAGAAGGGCTCAACCTGGGCTGGAGACAAAGCTCTGTTTACCCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025196.9 |
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| CDS GCA 72 bp | CCGCTTCCCGCATCCAGGGCAGCCCACTCGGGCCGCTaGCCCCGAGCGGCACCGCACAGATCCAGTAACGCC | + |
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Preference number: 6 (lower is better) Translates to: PLPASRAAHSGR*PRAAPHRSSNA Trigger: GGCGTTACTGGATCTGTGCGGTGCCGCTCGGGGGCAGCGGCCCGAGTGGGCTGCCCTGGATGCGGGAAGCGG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025196.9 ENSMUST00000173441.9 |
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| CDS CCA 72 bp | TTTCCTGGTCACCACCAAAGGACCTCAGGAATGCGGTaGGCTGCATTCCCCGGGGAAGTGCGAGCTCCGGAG | + |
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Preference number: 6 (lower is better) Translates to: FPGHHQRTSGMR*AAFPGEVRAPE Trigger: CTCCGGAGCTCGCACTTCCCCGGGGAATGCAGCCCACCGCATTCCTGAGGTCCTTTGGTGGTGACCAGGAAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025196.9 ENSMUST00000173441.9 |
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| CDS GCA 72 bp | ATTCCTTTCCTGGTCACCACCAAAGGACCTCAGGAATaGGGTGGGCTGCATTCCCCGGGGAAGTGCGAGCTC | + |
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Preference number: 6 (lower is better) Translates to: IPFLVTTKGPQE*GGLHSPGKCEL Trigger: GAGCTCGCACTTCCCCGGGGAATGCAGCCCACCGCATTCCTGAGGTCCTTTGGTGGTGACCAGGAAAGGAAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025196.9 ENSMUST00000173441.9 |
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| CDS GCA 72 bp | CTTGGCCAACAGCCTCTCCCAGTACTGGCAGTCGGCTaGACAACCAGACATGGTGCCAAGCAGGTAAGGGTT | + |
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Preference number: 6 (lower is better) Translates to: LGQQPLPVLAVG*TTRHGAKQVRV Trigger: AACCCTTACCTGCTTGGCACCATGTCTGGTTGTGCAGCCGACTGCCAGTACTGGGAGAGGCTGTTGGCCAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000025196.9 ENSMUST00000173441.9 ENSMUST00000236331.2 |
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| CDS GCA 72 bp | ATCATGCTGCCCATGGAGAGGCCCATCCCCCGGTACTaGAGCATCATGTTGGAAAGCAGCTTGGATGCTGCA | + |
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Preference number: 6 (lower is better) Translates to: IMLPMERPIPRY*SIMLESSLDAA Trigger: TGCAGCATCCAAGCTGCTTTCCAACATGATGCTGCAGTACCGGGGGATGGGCCTCTCCATGGGCAGCATGAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000025196.9 ENSMUST00000173441.9 ENSMUST00000236331.2 |
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| CDS CCA 72 bp | CCATCACCCCATAGGCATAGGTGTTCCCGCTGCCAGTaGAAAACATCTGTCCCGAGAGCCGAGTCCCATTGT | + |
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Preference number: 6 (lower is better) Translates to: PSPHRHRCSRCQ*KTSVPRAESHC Trigger: ACAATGGGACTCGGCTCTCGGGACAGATGTTTTCCACTGGCAGCGGGAACACCTATGCCTATGGGGTGATGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025196.9 ENSMUST00000173441.9 |
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| CDS CAA 72 bp | ATGGAGAGGCCCATCCCCCGGTACTGCAGCATCATGTaGGAAAGCAGCTTGGATGCTGCAGACACGGAGATG | + |
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Preference number: 6 (lower is better) Translates to: MERPIPRYCSIM*ESSLDAADTEM Trigger: CATCTCCGTGTCTGCAGCATCCAAGCTGCTTTCCAACATGATGCTGCAGTACCGGGGGATGGGCCTCTCCAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000025196.9 ENSMUST00000173441.9 ENSMUST00000236331.2 |
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| CDS CCA 72 bp | GTTCCCCATTCCGAAGATAATACAACCTGCACTCCTTaGCCAACAGCCTCTCCCAGTACTGGCAGTCGGCTG | + |
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Preference number: 6 (lower is better) Translates to: VPHSEDNTTCTP*PTASPSTGSRL Trigger: CAGCCGACTGCCAGTACTGGGAGAGGCTGTTGGCCAAGGAGTGCAGGTTGTATTATCTTCGGAATGGGGAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000025196.9 ENSMUST00000173441.9 ENSMUST00000236331.2 |
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