RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PSMB6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000018286

Ensembl transcript IDs: ENSMUST00000018430.7

Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp TTAGCTTCTGCGTCGGTATGGACCATCCTTTACTACTCCCTAGAACACCAGGCCCCGGTTTTCCCAGTCTaGGGTGAGAGCCTCCGGCCC +
Preference number: 4 (lower is better)
Translates to: LASASVWTILYYSLEHQAPVFPV*GESLRP
Trigger: GGGCCGGAGGCTCTCACCCCAGACTGGGAAAACCGG...GGCCTGGTGTTCTAGGGAGTAGTAAAGGATGGTCCATACCGACGCAGAAGCTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS-3UTR GCA 90 bp TTATTAGCTTCTGCGTCGGTATGGACCATCCTTTACTACTCCCTAGAACACCAGCGGCCCAAAGGCCGGTaGAGACCCCGCTCGACGAAC +
Preference number: 4 (lower is better)
Translates to: LLASASVWTILYYSLEHQRPKGR*RPRSTN
Trigger: GTTCGTCGAGCGGGGTCTGCACCGGCCTTTGGGCCG...CTGGTGTTCTAGGGAGTAGTAAAGGATGGTCCATACCGACGCAGAAGCTAATAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS-3UTR CCA 90 bp TTAGCTTCTGCGTCGGTATGGACCATCCTTTACTACTCCCTAGAACACCAGGCCCCCCTGACTCCTGAATaGCTGCCAAGCGGATCACCC +
Preference number: 4 (lower is better)
Translates to: LASASVWTILYYSLEHQAPLTPE*LPSGSP
Trigger: GGGTGATCCGCTTGGCAGCCATTCAGGAGTCAGGGG...GGCCTGGTGTTCTAGGGAGTAGTAAAGGATGGTCCATACCGACGCAGAAGCTAA
56% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS-3UTR TCA 90 bp ATTAGCTTCTGCGTCGGTATGGACCATCCTTTACTACTCCCTAGAACACCAGGCCTGCCGCTCTACCCCTaGCTCCTGAATGGCTGCCAA +
Preference number: 4 (lower is better)
Translates to: ISFCVGMDHPLLLPRTPGLPLYP*LLNGCQ
Trigger: TTGGCAGCCATTCAGGAGTCAGGGGTAGAGCGGCAG...GCCTGGTGTTCTAGGGAGTAGTAAAGGATGGTCCATACCGACGCAGAAGCTAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS-3UTR CCA 90 bp TTAGCTTCTGCGTCGGTATGGACCATCCTTTACTACTCCCTAGAACACCAGGCCCGATGTAGGACCCAGTaGTTGTCCTGGAGTCCGCTC +
Preference number: 4 (lower is better)
Translates to: LASASVWTILYYSLEHQARCRTQ*LSWSPL
Trigger: GAGCGGACTCCAGGACAACCACTGGGTCCTACATCG...GGCCTGGTGTTCTAGGGAGTAGTAAAGGATGGTCCATACCGACGCAGAAGCTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS-3UTR TCA 90 bp TTATTAGCTTCTGCGTCGGTATGGACCATCCTTTACTACTCCCTAGAACACCAGTTTCCCAGTCTGGGGTaGGAGCCTCCGGCCCAAAGG +
Preference number: 4 (lower is better)
Translates to: LLASASVWTILYYSLEHQFPSLG*EPPAQR
Trigger: CCTTTGGGCCGGAGGCTCTCACCCCAGACTGGGAAA...CTGGTGTTCTAGGGAGTAGTAAAGGATGGTCCATACCGACGCAGAAGCTAATAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS-3UTR TCA 90 bp ATTAGCTTCTGCGTCGGTATGGACCATCCTTTACTACTCCCTAGAACACCAGGCTCTACCCCTGACTCCTaGATGGCTGCCAAGCGGATC +
Preference number: 4 (lower is better)
Translates to: ISFCVGMDHPLLLPRTPGSTPDS*MAAKRI
Trigger: GATCCGCTTGGCAGCCATTCAGGAGTCAGGGGTAGA...GCCTGGTGTTCTAGGGAGTAGTAAAGGATGGTCCATACCGACGCAGAAGCTAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS-3UTR GCA 90 bp TTAGCTTCTGCGTCGGTATGGACCATCCTTTACTACTCCCTAGAACACCAGGCCGTAAGTGACAGCGTCTaGCACTGCTTGGGTATCAGC +
Preference number: 4 (lower is better)
Translates to: LASASVWTILYYSLEHQAVSDSV*HCLGIS
Trigger: GCTGATACCCAAGCAGTGGCAGACGCTGTCACTTAC...GGCCTGGTGTTCTAGGGAGTAGTAAAGGATGGTCCATACCGACGCAGAAGCTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS-3UTR TCA 90 bp ATTAGCTTCTGCGTCGGTATGGACCATCCTTTACTACTCCCTAGAACACCAGGCAACCAAGCTGGTAAGTaGCAGCGTCTGCCACTGCTT +
Preference number: 4 (lower is better)
Translates to: ISFCVGMDHPLLLPRTPGNQAGK*QRLPLL
Trigger: AAGCAGTGGCAGACGCTGTCACTTACCAGCTTGGTT...GCCTGGTGTTCTAGGGAGTAGTAAAGGATGGTCCATACCGACGCAGAAGCTAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS-3UTR TCA 90 bp TTTATTAGCTTCTGCGTCGGTATGGACCATCCTTTACTACTCCCTAGAACACCAACCTGCCCTCCTTCTTaGGGGTCCCAGCCTGCAATG +
Preference number: 4 (lower is better)
Translates to: FISFCVGMDHPLLLPRTPTCPPS*GSQPAM
Trigger: CATTGCAGGCTGGGACCCTCAAGAAGGAGGGCAGGT...TGGTGTTCTAGGGAGTAGTAAAGGATGGTCCATACCGACGCAGAAGCTAATAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS-3UTR GCA 90 bp TTAGCTTCTGCGTCGGTATGGACCATCCTTTACTACTCCCTAGAACACCAGGCCTTGAGGGTCCCAGCCTaGAATGATGATTCCTGCCAT +
Preference number: 4 (lower is better)
Translates to: LASASVWTILYYSLEHQALRVPA*NDDSCH
Trigger: ATGGCAGGAATCATCATTGCAGGCTGGGACCCTCAA...GGCCTGGTGTTCTAGGGAGTAGTAAAGGATGGTCCATACCGACGCAGAAGCTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS-3UTR GCA 90 bp TTATTAGCTTCTGCGTCGGTATGGACCATCCTTTACTACTCCCTAGAACACCAGTCTCCCAAAAGCACCTaGCGCTCTACCCCTGACTCC +
Preference number: 4 (lower is better)
Translates to: LLASASVWTILYYSLEHQSPKST*RSTPDS
Trigger: GGAGTCAGGGGTAGAGCGGCAGGTGCTTTTGGGAGA...CTGGTGTTCTAGGGAGTAGTAAAGGATGGTCCATACCGACGCAGAAGCTAATAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS-3UTR CCA 90 bp TTATTAGCTTCTGCGTCGGTATGGACCATCCTTTACTACTCCCTAGAACACCAGAGACTGGCGGCTGTGTaGACTAGTGGAGGCTCGTTC +
Preference number: 4 (lower is better)
Translates to: LLASASVWTILYYSLEHQRLAAV*TSGGSF
Trigger: GAACGAGCCTCCACTAGTCCACACAGCCGCCAGTCT...CTGGTGTTCTAGGGAGTAGTAAAGGATGGTCCATACCGACGCAGAAGCTAATAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS-3UTR CCA 90 bp ATTAGCTTCTGCGTCGGTATGGACCATCCTTTACTACTCCCTAGAACACCAGGCGCAGACATTCGTCCTTaGTCATGCCTTCCCGATACG +
Preference number: 4 (lower is better)
Translates to: ISFCVGMDHPLLLPRTPGADIRP*SCLPDT
Trigger: CGTATCGGGAAGGCATGACCAAGGACGAATGTCTGC...GCCTGGTGTTCTAGGGAGTAGTAAAGGATGGTCCATACCGACGCAGAAGCTAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS-3UTR CCA 90 bp TTATTAGCTTCTGCGTCGGTATGGACCATCCTTTACTACTCCCTAGAACACCAGTCCCGGAGCCTCCGATaGCAAAGGACTGTCTTACCA +
Preference number: 4 (lower is better)
Translates to: LLASASVWTILYYSLEHQSRSLR*QRTVLP
Trigger: TGGTAAGACAGTCCTTTGCCATCGGAGGCTCCGGGA...CTGGTGTTCTAGGGAGTAGTAAAGGATGGTCCATACCGACGCAGAAGCTAATAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS-3UTR CCA 90 bp TTTATTAGCTTCTGCGTCGGTATGGACCATCCTTTACTACTCCCTAGAACACCAAGCCGTCGCGTTCCATaGCCAAAGCGAGAGCATTGG +
Preference number: 4 (lower is better)
Translates to: FISFCVGMDHPLLLPRTPSRRVP*PKREHW
Trigger: CCAATGCTCTCGCTTTGGCCATGGAACGCGACGGCT...TGGTGTTCTAGGGAGTAGTAAAGGATGGTCCATACCGACGCAGAAGCTAATAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS-3UTR CCA 90 bp ATTAGCTTCTGCGTCGGTATGGACCATCCTTTACTACTCCCTAGAACACCAGGCGTGAACTTGGGGATTTaGTCTCCCAAAAGCACCTGC +
Preference number: 4 (lower is better)
Translates to: ISFCVGMDHPLLLPRTPGVNLGI*SPKSTC
Trigger: GCAGGTGCTTTTGGGAGACCAAATCCCCAAGTTCAC...GCCTGGTGTTCTAGGGAGTAGTAAAGGATGGTCCATACCGACGCAGAAGCTAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS-3UTR CCA 90 bp TTTATTAGCTTCTGCGTCGGTATGGACCATCCTTTACTACTCCCTAGAACACCAACCCAGTGGTTGTCCTaGAGTCCGCTCCTAGAACCA +
Preference number: 4 (lower is better)
Translates to: FISFCVGMDHPLLLPRTPTQWLS*SPLLEP
Trigger: TGGTTCTAGGAGCGGACTCCAGGACAACCACTGGGT...TGGTGTTCTAGGGAGTAGTAAAGGATGGTCCATACCGACGCAGAAGCTAATAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS-3UTR GCA 90 bp TTATTAGCTTCTGCGTCGGTATGGACCATCCTTTACTACTCCCTAGAACACCAGGCATTGGCAGTGAACTaGAGACATTCGTCCTTGGTC +
Preference number: 4 (lower is better)
Translates to: LLASASVWTILYYSLEHQALAVN*RHSSLV
Trigger: GACCAAGGACGAATGTCTGCAGTTCACTGCCAATGC...CTGGTGTTCTAGGGAGTAGTAAAGGATGGTCCATACCGACGCAGAAGCTAATAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS-3UTR CCA 90 bp TTTATTAGCTTCTGCGTCGGTATGGACCATCCTTTACTACTCCCTAGAACACCATGTCAGTCACTCGATTaGCGATGTAGGACCCAGTGG +
Preference number: 4 (lower is better)
Translates to: FISFCVGMDHPLLLPRTPCQSLD*RCRTQW
Trigger: CCACTGGGTCCTACATCGCCAATCGAGTGACTGACA...TGGTGTTCTAGGGAGTAGTAAAGGATGGTCCATACCGACGCAGAAGCTAATAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS-3UTR GCA 90 bp ATTAGCTTCTGCGTCGGTATGGACCATCCTTTACTACTCCCTAGAACACCAGGCTGCAATGATGATTCCTaGCATCAGATCTTCTCTGTA +
Preference number: 4 (lower is better)
Translates to: ISFCVGMDHPLLLPRTPGCNDDS*HQIFSV
Trigger: TACAGAGAAGATCTGATGGCAGGAATCATCATTGCA...GCCTGGTGTTCTAGGGAGTAGTAAAGGATGGTCCATACCGACGCAGAAGCTAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS CCA 90 bp AGCCATGATCGTGGTCCCTGTGGAGACTTCCCGGTTTTCCCAGTCTaGGGTGAGAGCCTCCGGCCCAAAGGCCGGTGCAGACCCCGCTCG +
Preference number: 5 (lower is better)
Translates to: SHDRGPCGDFPVFPV*GESLRPKGRCRPRS
Trigger: CGAGCGGGGTCTGCACCGGCCTTTGGGCCGGAGGCTCTCACCCCAGACTGGGAAAACCGGGAAGTCTCCACAGGGACCACGATCATGGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS GCA 90 bp GTGGTTGTCCTGGAGTCCGCTCCTAGAACCACGCCCCCATTAAACTaGACAGCCATGATCGTGGTCCCTGTGGAGACTTCCCGGTTTTCC +
Preference number: 5 (lower is better)
Translates to: VVVLESAPRTTPPLN*TAMIVVPVETSRFS
Trigger: GGAAAACCGGGAAGTCTCCACAGGGACCACGATCATGGCTGTGCAGTTTAATGGGGGCGTGGTTCTAGGAGCGGACTCCAGGACAACCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS TCA 90 bp ACTGCTTGGGTATCAGCGGCTGAGCCTGAGCGGCAGCAGAAGATGTaGTCGTGGATAGGGGTCAGCTTGTCAGTCACTCGATTGGCGATG +
Preference number: 5 (lower is better)
Translates to: TAWVSAAEPERQQKM*SWIGVSLSVTRLAM
Trigger: CATCGCCAATCGAGTGACTGACAAGCTGACCCCTATCCACGATCACATCTTCTGCTGCCGCTCAGGCTCAGCCGCTGATACCCAAGCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS TCA 90 bp GTGGAGGCTCGTTCAGTTCAATACTGTGGAAACCAAGCTGGTAAGTaGCAGCGTCTGCCACTGCTTGGGTATCAGCGGCTGAGCCTGAGC +
Preference number: 5 (lower is better)
Translates to: VEARSVQYCGNQAGK*QRLPLLGYQRLSLS
Trigger: GCTCAGGCTCAGCCGCTGATACCCAAGCAGTGGCAGACGCTGTCACTTACCAGCTTGGTTTCCACAGTATTGAACTGAACGAGCCTCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS GCA 90 bp CATGGGAACAGAGTACACCTGCCCTCCTTCTTGAGGGTCCCAGCCTaGAATGATGATTCCTGCCATCAGATCTTCTCTGTACCGGTAACA +
Preference number: 5 (lower is better)
Translates to: HGNRVHLPSFLRVPA*NDDSCHQIFSVPVT
Trigger: TGTTACCGGTACAGAGAAGATCTGATGGCAGGAATCATCATTGCAGGCTGGGACCCTCAAGAAGGAGGGCAGGTGTACTCTGTTCCCATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS-3UTR CAA 90 bp ATTAGCTTCTGCGTCGGTATGGACCATCCTTTACTACTCCCTAGAACACCAGGCTGGATAGGGGTCAGCTaGTCAGTCACTCGATTGGCG +
Preference number: 5 (lower is better)
Translates to: ISFCVGMDHPLLLPRTPGWIGVS*SVTRLA
Trigger: CGCCAATCGAGTGACTGACAAGCTGACCCCTATCCA...GCCTGGTGTTCTAGGGAGTAGTAAAGGATGGTCCATACCGACGCAGAAGCTAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS-3UTR CAA 90 bp TTAGCTTCTGCGTCGGTATGGACCATCCTTTACTACTCCCTAGAACACCAGGCCTGCAGACATTCGTCCTaGGTCATGCCTTCCCGATAC +
Preference number: 5 (lower is better)
Translates to: LASASVWTILYYSLEHQACRHSS*VMPSRY
Trigger: GTATCGGGAAGGCATGACCAAGGACGAATGTCTGCA...GGCCTGGTGTTCTAGGGAGTAGTAAAGGATGGTCCATACCGACGCAGAAGCTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS GCA 90 bp CACCTGCCCTCCTTCTTGAGGGTCCCAGCCTGCAATGATGATTCCTaGCATCAGATCTTCTCTGTACCGGTAACACATCTCCTTAAAGAG +
Preference number: 5 (lower is better)
Translates to: HLPSFLRVPACNDDS*HQIFSVPVTHLLKE
Trigger: CTCTTTAAGGAGATGTGTTACCGGTACAGAGAAGATCTGATGGCAGGAATCATCATTGCAGGCTGGGACCCTCAAGAAGGAGGGCAGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS-3UTR CAA 90 bp TTATTAGCTTCTGCGTCGGTATGGACCATCCTTTACTACTCCCTAGAACACCAGTGTAGGACCCAGTGGTaGTCCTGGAGTCCGCTCCTA +
Preference number: 5 (lower is better)
Translates to: LLASASVWTILYYSLEHQCRTQW*SWSPLL
Trigger: TAGGAGCGGACTCCAGGACAACCACTGGGTCCTACA...CTGGTGTTCTAGGGAGTAGTAAAGGATGGTCCATACCGACGCAGAAGCTAATAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS-3UTR CAA 90 bp TTTATTAGCTTCTGCGTCGGTATGGACCATCCTTTACTACTCCCTAGAACACCACACCTGCCCTCCTTCTaGAGGGTCCCAGCCTGCAAT +
Preference number: 5 (lower is better)
Translates to: FISFCVGMDHPLLLPRTPHLPSF*RVPACN
Trigger: ATTGCAGGCTGGGACCCTCAAGAAGGAGGGCAGGTG...TGGTGTTCTAGGGAGTAGTAAAGGATGGTCCATACCGACGCAGAAGCTAATAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS-3UTR CAA 90 bp ATTAGCTTCTGCGTCGGTATGGACCATCCTTTACTACTCCCTAGAACACCAGGCGCCAAAGCGAGAGCATaGGCAGTGAACTGCAGACAT +
Preference number: 5 (lower is better)
Translates to: ISFCVGMDHPLLLPRTPGAKARA*AVNCRH
Trigger: ATGTCTGCAGTTCACTGCCAATGCTCTCGCTTTGGC...GCCTGGTGTTCTAGGGAGTAGTAAAGGATGGTCCATACCGACGCAGAAGCTAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS-3UTR CAA 90 bp TTTATTAGCTTCTGCGTCGGTATGGACCATCCTTTACTACTCCCTAGAACACCAGTGGCAATGGTGAACTaGGGGATTTGGTCTCCCAAA +
Preference number: 5 (lower is better)
Translates to: FISFCVGMDHPLLLPRTPVAMVN*GIWSPK
Trigger: TTTGGGAGACCAAATCCCCAAGTTCACCATTGCCAC...TGGTGTTCTAGGGAGTAGTAAAGGATGGTCCATACCGACGCAGAAGCTAATAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS CCA 72 bp CGTGGTCCCTGTGGAGACTTCCCGGTTTTCCCAGTCTaGGGTGAGAGCCTCCGGCCCAAAGGCCGGTGCAGA +
Preference number: 6 (lower is better)
Translates to: RGPCGDFPVFPV*GESLRPKGRCR
Trigger: TCTGCACCGGCCTTTGGGCCGGAGGCTCTCACCCCAGACTGGGAAAACCGGGAAGTCTCCACAGGGACCACG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS CCA 72 bp ACTCCTGAATGGCTGCCAAGCGGATCACCCCTCCACTaGAGCCGTCGCGTTCCATGGCCAAAGCGAGAGCAT +
Preference number: 6 (lower is better)
Translates to: TPEWLPSGSPLH*SRRVPWPKREH
Trigger: ATGCTCTCGCTTTGGCCATGGAACGCGACGGCTCCAGTGGAGGGGTGATCCGCTTGGCAGCCATTCAGGAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS GCA 72 bp CTGGAGTCCGCTCCTAGAACCACGCCCCCATTAAACTaGACAGCCATGATCGTGGTCCCTGTGGAGACTTCC +
Preference number: 6 (lower is better)
Translates to: LESAPRTTPPLN*TAMIVVPVETS
Trigger: GGAAGTCTCCACAGGGACCACGATCATGGCTGTGCAGTTTAATGGGGGCGTGGTTCTAGGAGCGGACTCCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS TCA 72 bp GTATCAGCGGCTGAGCCTGAGCGGCAGCAGAAGATGTaGTCGTGGATAGGGGTCAGCTTGTCAGTCACTCGA +
Preference number: 6 (lower is better)
Translates to: VSAAEPERQQKM*SWIGVSLSVTR
Trigger: TCGAGTGACTGACAAGCTGACCCCTATCCACGATCACATCTTCTGCTGCCGCTCAGGCTCAGCCGCTGATAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS TCA 72 bp CGTCGCGTTCCATGGCCAAAGCGAGAGCATTGGCAGTaGACTGCAGACATTCGTCCTTGGTCATGCCTTCCC +
Preference number: 6 (lower is better)
Translates to: RRVPWPKREHWQ*TADIRPWSCLP
Trigger: GGGAAGGCATGACCAAGGACGAATGTCTGCAGTTCACTGCCAATGCTCTCGCTTTGGCCATGGAACGCGACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS GCA 72 bp CGTTCCATGGCCAAAGCGAGAGCATTGGCAGTGAACTaGAGACATTCGTCCTTGGTCATGCCTTCCCGATAC +
Preference number: 6 (lower is better)
Translates to: RSMAKARALAVN*RHSSLVMPSRY
Trigger: GTATCGGGAAGGCATGACCAAGGACGAATGTCTGCAGTTCACTGCCAATGCTCTCGCTTTGGCCATGGAACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7
CDS TCA 72 bp CGTTCAGTTCAATACTGTGGAAACCAAGCTGGTAAGTaGCAGCGTCTGCCACTGCTTGGGTATCAGCGGCTG +
Preference number: 6 (lower is better)
Translates to: RSVQYCGNQAGK*QRLPLLGYQRL
Trigger: CAGCCGCTGATACCCAAGCAGTGGCAGACGCTGTCACTTACCAGCTTGGTTTCCACAGTATTGAACTGAACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018430.7