Pregenerated sensors for PSMB5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022193Ensembl transcript IDs: ENSMUST00000022803.6, ENSMUST00000227257.2
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | GGTACTATTATTTATTATAGCCATGGAGACCCACCTAGAGATGCAGACAACCGCGGCCCGGGAATCCGCTaGAACAATGACTCCATGGAG | + |
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Preference number: 4 (lower is better) Translates to: GTIIYYSHGDPPRDADNRGPGIR*NNDSME Trigger: CTCCATGGAGTCATTGTTGCAGCGGATTCCCGGGCC...GCGGTTGTCTGCATCTCTAGGTGGGTCTCCATGGCTATAATAAATAATAGTACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022803.6 ENSMUST00000227257.2 |
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| CDS-3UTR GCA 90 bp | GAAAGAGGTACTATTATTTATTATAGCCATGGAGACCCACCTAGAGATGCAGACGAAGCTGCAATCCGCTaGACCCCCAGCCATGGTGCC | + |
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Preference number: 4 (lower is better) Translates to: ERGTIIYYSHGDPPRDADEAAIR*TPSHGA Trigger: GGCACCATGGCTGGGGGTGCAGCGGATTGCAGCTTC...GTCTGCATCTCTAGGTGGGTCTCCATGGCTATAATAAATAATAGTACCTCTTTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022803.6 |
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| CDS-3UTR GCA 90 bp | GAAAGAGGTACTATTATTTATTATAGCCATGGAGACCCACCTAGAGATGCAGACACCGCTCCCAGAAGCTaGAATCCGCTGCACCCCCAG | + |
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Preference number: 4 (lower is better) Translates to: ERGTIIYYSHGDPPRDADTAPRS*NPLHPQ Trigger: CTGGGGGTGCAGCGGATTGCAGCTTCTGGGAGCGGT...GTCTGCATCTCTAGGTGGGTCTCCATGGCTATAATAAATAATAGTACCTCTTTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022803.6 |
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| CDS-3UTR GCA 90 bp | GGTACTATTATTTATTATAGCCATGGAGACCCACCTAGAGATGCAGACAACCGCGAGCAGTTTGGAGGCTaGTGCGACCGAGATGCGTTC | + |
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Preference number: 4 (lower is better) Translates to: GTIIYYSHGDPPRDADNREQFGG*CDRDAF Trigger: GAACGCATCTCGGTCGCAGCAGCCTCCAAACTGCTC...GCGGTTGTCTGCATCTCTAGGTGGGTCTCCATGGCTATAATAAATAATAGTACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022803.6 |
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| CDS-3UTR GCA 90 bp | GAGGTACTATTATTTATTATAGCCATGGAGACCCACCTAGAGATGCAGACAACCTACGTAGTAGAGGCCTaGTGTGGCCCGGGAATCCGC | + |
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Preference number: 4 (lower is better) Translates to: EVLLFIIAMETHLEMQTTYVVEA*CGPGIR Trigger: GCGGATTCCCGGGCCACAGCAGGCCTCTACTACGTA...GGTTGTCTGCATCTCTAGGTGGGTCTCCATGGCTATAATAAATAATAGTACCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227257.2 |
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| CDS-3UTR TCA 90 bp | GAGGTACTATTATTTATTATAGCCATGGAGACCCACCTAGAGATGCAGACAACCAGGGTGGTGGTTCCGTaGAGCATTTCGATTCGCGGC | + |
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Preference number: 4 (lower is better) Translates to: EVLLFIIAMETHLEMQTTRVVVP*SISIRG Trigger: GCCGCGAATCGAAATGCTTCACGGAACCACCACCCT...GGTTGTCTGCATCTCTAGGTGGGTCTCCATGGCTATAATAAATAATAGTACCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022803.6 ENSMUST00000227257.2 |
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| CDS-3UTR TCA 90 bp | GGTACTATTATTTATTATAGCCATGGAGACCCACCTAGAGATGCAGACAACCGCCTCCATGGAGAAACTTaGAGGCCAGGGTGGTGGTTC | + |
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Preference number: 4 (lower is better) Translates to: GTIIYYSHGDPPRDADNRLHGET*RPGWWF Trigger: GAACCACCACCCTGGCCTTCAAGTTTCTCCATGGAG...GCGGTTGTCTGCATCTCTAGGTGGGTCTCCATGGCTATAATAAATAATAGTACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022803.6 ENSMUST00000227257.2 |
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| CDS-3UTR GCA 90 bp | GGTACTATTATTTATTATAGCCATGGAGACCCACCTAGAGATGCAGACAACCGCCAGTTTGGAGGCTGCTaGGACCGAGATGCGTTCCTT | + |
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Preference number: 4 (lower is better) Translates to: GTIIYYSHGDPPRDADNRQFGGC*DRDAFL Trigger: AAGGAACGCATCTCGGTCGCAGCAGCCTCCAAACTG...GCGGTTGTCTGCATCTCTAGGTGGGTCTCCATGGCTATAATAAATAATAGTACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022803.6 |
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| CDS-3UTR CCA 90 bp | AAAGAGGTACTATTATTTATTATAGCCATGGAGACCCACCTAGAGATGCAGACACTGCACCCCCAGCCATaGTGCCCAGAAGGTACGGGT | + |
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Preference number: 4 (lower is better) Translates to: KEVLLFIIAMETHLEMQTLHPQP*CPEGTG Trigger: ACCCGTACCTTCTGGGCACCATGGCTGGGGGTGCAG...TGTCTGCATCTCTAGGTGGGTCTCCATGGCTATAATAAATAATAGTACCTCTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022803.6 |
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| CDS-3UTR CCA 90 bp | GTACTATTATTTATTATAGCCATGGAGACCCACCTAGAGATGCAGACAACCGCAAGGTGGCTTGGTAGATaGCTCGGCGGGCCAGATCAT | + |
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Preference number: 4 (lower is better) Translates to: VLLFIIAMETHLEMQTTARWLGR*LGGPDH Trigger: ATGATCTGGCCCGCCGAGCCATCTACCAAGCCACCT...TGCGGTTGTCTGCATCTCTAGGTGGGTCTCCATGGCTATAATAAATAATAGTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022803.6 ENSMUST00000227257.2 |
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| CDS-3UTR TCA 90 bp | AGAGGTACTATTATTTATTATAGCCATGGAGACCCACCTAGAGATGCAGACAACAGGGTGGTGGTTCCGTaGAGCATTTCGATTCGCGGC | + |
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Preference number: 4 (lower is better) Translates to: RGTIIYYSHGDPPRDADNRVVVP*SISIRG Trigger: GCCGCGAATCGAAATGCTTCACGGAACCACCACCCT...GTTGTCTGCATCTCTAGGTGGGTCTCCATGGCTATAATAAATAATAGTACCTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022803.6 ENSMUST00000227257.2 |
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| CDS-3UTR GCA 90 bp | AGAGGTACTATTATTTATTATAGCCATGGAGACCCACCTAGAGATGCAGACAACGGCCCGGGAATCCGCTaGAACAATGACTCCATGGAG | + |
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Preference number: 4 (lower is better) Translates to: RGTIIYYSHGDPPRDADNGPGIR*NNDSME Trigger: CTCCATGGAGTCATTGTTGCAGCGGATTCCCGGGCC...GTTGTCTGCATCTCTAGGTGGGTCTCCATGGCTATAATAAATAATAGTACCTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022803.6 ENSMUST00000227257.2 |
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| CDS-3UTR TCA 90 bp | AGAGGTACTATTATTTATTATAGCCATGGAGACCCACCTAGAGATGCAGACAACCTCCATGGAGAAACTTaGAGGCCAGGGTGGTGGTTC | + |
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Preference number: 4 (lower is better) Translates to: RGTIIYYSHGDPPRDADNLHGET*RPGWWF Trigger: GAACCACCACCCTGGCCTTCAAGTTTCTCCATGGAG...GTTGTCTGCATCTCTAGGTGGGTCTCCATGGCTATAATAAATAATAGTACCTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022803.6 ENSMUST00000227257.2 |
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| CDS-3UTR CCA 90 bp | AAAGAGGTACTATTATTTATTATAGCCATGGAGACCCACCTAGAGATGCAGACAAGGTGGCTTGGTAGATaGCTCGGCGGGCCAGATCAT | + |
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Preference number: 4 (lower is better) Translates to: KEVLLFIIAMETHLEMQTRWLGR*LGGPDH Trigger: ATGATCTGGCCCGCCGAGCCATCTACCAAGCCACCT...TGTCTGCATCTCTAGGTGGGTCTCCATGGCTATAATAAATAATAGTACCTCTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022803.6 ENSMUST00000227257.2 |
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| CDS-3UTR CCA 90 bp | GTACTATTATTTATTATAGCCATGGAGACCCACCTAGAGATGCAGACAACCGCAGCAACAATGACTCCATaGAGAAACTTGAAGGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: VLLFIIAMETHLEMQTTAATMTP*RNLKAR Trigger: CCTGGCCTTCAAGTTTCTCCATGGAGTCATTGTTGC...TGCGGTTGTCTGCATCTCTAGGTGGGTCTCCATGGCTATAATAAATAATAGTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022803.6 ENSMUST00000227257.2 |
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| CDS-3UTR CCA 90 bp | AGAGGTACTATTATTTATTATAGCCATGGAGACCCACCTAGAGATGCAGACAACGCAACAATGACTCCATaGAGAAACTTGAAGGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: RGTIIYYSHGDPPRDADNATMTP*RNLKAR Trigger: CCTGGCCTTCAAGTTTCTCCATGGAGTCATTGTTGC...GTTGTCTGCATCTCTAGGTGGGTCTCCATGGCTATAATAAATAATAGTACCTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022803.6 ENSMUST00000227257.2 |
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| CDS-3UTR TCA 90 bp | AAAGAGGTACTATTATTTATTATAGCCATGGAGACCCACCTAGAGATGCAGACACCAGAAGGTACGGGTTaGTCTCTATTACTTTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: KEVLLFIIAMETHLEMQTPEGTG*SLLLSS Trigger: TGAAGAAAGTAATAGAGATCAACCCGTACCTTCTGG...TGTCTGCATCTCTAGGTGGGTCTCCATGGCTATAATAAATAATAGTACCTCTTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022803.6 |
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| CDS-3UTR GCA 90 bp | AAAGAGGTACTATTATTTATTATAGCCATGGAGACCCACCTAGAGATGCAGACAAGATGCGTTCCTTATTaGGAAGCTCATAGATTCGAC | + |
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Preference number: 4 (lower is better) Translates to: KEVLLFIIAMETHLEMQTRCVPY*EAHRFD Trigger: GTCGAATCTATGAGCTTCGCAATAAGGAACGCATCT...TGTCTGCATCTCTAGGTGGGTCTCCATGGCTATAATAAATAATAGTACCTCTTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022803.6 |
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| CDS TCA 90 bp | GCCTCGATCCATAACGCCGTAAGCATACACGGAGCCAGAGCCCACTaGGAAGGCGGTCCCAGAGATCCTGTTCCCCTCGCTGTCTACGTA | + |
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Preference number: 5 (lower is better) Translates to: ASIHNAVSIHGARAH*EGGPRDPVPLAVYV Trigger: TACGTAGACAGCGAGGGGAACAGGATCTCTGGGACCGCCTTCTCAGTGGGCTCTGGCTCCGTGTATGCTTACGGCGTTATGGATCGAGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022803.6 ENSMUST00000227257.2 |
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| CDS TCA 90 bp | TGCAATCCGCTGCACCCCCAGCCATGGTGCCCAGAAGGTACGGGTTaGTCTCTATTACTTTCTTCACCGTCTGGGAAGCAATATAAGCAC | + |
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Preference number: 5 (lower is better) Translates to: CNPLHPQPWCPEGTG*SLLLSSPSGKQYKH Trigger: GTGCTTATATTGCTTCCCAGACGGTGAAGAAAGTAATAGAGATCAACCCGTACCTTCTGGGCACCATGGCTGGGGGTGCAGCGGATTGCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022803.6 |
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| CDS-3UTR CAA 90 bp | GAAAGAGGTACTATTATTTATTATAGCCATGGAGACCCACCTAGAGATGCAGACATGTTAGCGAGCAGTTaGGAGGCTGCTGCGACCGAG | + |
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Preference number: 5 (lower is better) Translates to: ERGTIIYYSHGDPPRDADMLASS*EAAATE Trigger: CTCGGTCGCAGCAGCCTCCAAACTGCTCGCTAACAT...GTCTGCATCTCTAGGTGGGTCTCCATGGCTATAATAAATAATAGTACCTCTTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022803.6 |
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| CDS-3UTR CAA 90 bp | GAGGTACTATTATTTATTATAGCCATGGAGACCCACCTAGAGATGCAGACAACCTGTAAGTCAGCTACATaGTCACTGGACACCCGGATC | + |
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Preference number: 5 (lower is better) Translates to: EVLLFIIAMETHLEMQTTCKSAT*SLDTRI Trigger: GATCCGGGTGTCCAGTGACAATGTAGCTGACTTACA...GGTTGTCTGCATCTCTAGGTGGGTCTCCATGGCTATAATAAATAATAGTACCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022803.6 ENSMUST00000227257.2 |
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| CDS-3UTR CAA 90 bp | AAAGAGGTACTATTATTTATTATAGCCATGGAGACCCACCTAGAGATGCAGACATGTAAGTCAGCTACATaGTCACTGGACACCCGGATC | + |
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Preference number: 5 (lower is better) Translates to: KEVLLFIIAMETHLEMQTCKSAT*SLDTRI Trigger: GATCCGGGTGTCCAGTGACAATGTAGCTGACTTACA...TGTCTGCATCTCTAGGTGGGTCTCCATGGCTATAATAAATAATAGTACCTCTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022803.6 ENSMUST00000227257.2 |
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| CDS TCA 72 bp | CATAACGCCGTAAGCATACACGGAGCCAGAGCCCACTaGGAAGGCGGTCCCAGAGATCCTGTTCCCCTCGCT | + |
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Preference number: 6 (lower is better) Translates to: HNAVSIHGARAH*EGGPRDPVPLA Trigger: AGCGAGGGGAACAGGATCTCTGGGACCGCCTTCTCAGTGGGCTCTGGCTCCGTGTATGCTTACGGCGTTATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022803.6 ENSMUST00000227257.2 |
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| CDS CAA 72 bp | GCTGCACCCCCAGCCATGGTGCCCAGAAGGTACGGGTaGATCTCTATTACTTTCTTCACCGTCTGGGAAGCA | + |
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Preference number: 6 (lower is better) Translates to: AAPPAMVPRRYG*ISITFFTVWEA Trigger: TGCTTCCCAGACGGTGAAGAAAGTAATAGAGATCAACCCGTACCTTCTGGGCACCATGGCTGGGGGTGCAGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022803.6 |
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| CDS TCA 72 bp | CTGCACCCCCAGCCATGGTGCCCAGAAGGTACGGGTTaGTCTCTATTACTTTCTTCACCGTCTGGGAAGCAA | + |
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Preference number: 6 (lower is better) Translates to: LHPQPWCPEGTG*SLLLSSPSGKQ Trigger: TTGCTTCCCAGACGGTGAAGAAAGTAATAGAGATCAACCCGTACCTTCTGGGCACCATGGCTGGGGGTGCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022803.6 |
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| CDS GCA 72 bp | TACTTTCTTCACCGTCTGGGAAGCAATATAAGCACCTaGTGTGGCCCGGGAATCCGCTGCAACAATGACTCC | + |
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Preference number: 6 (lower is better) Translates to: YFLHRLGSNIST*CGPGIRCNNDS Trigger: GGAGTCATTGTTGCAGCGGATTCCCGGGCCACAGCAGGTGCTTATATTGCTTCCCAGACGGTGAAGAAAGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022803.6 |
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| CDS GCA 72 bp | CTGATACACCATGTTAGCGAGCAGTTTGGAGGCTGCTaGGACCGAGATGCGTTCCTTATTGCGAAGCTCATA | + |
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Preference number: 6 (lower is better) Translates to: LIHHVSEQFGGC*DRDAFLIAKLI Trigger: TATGAGCTTCGCAATAAGGAACGCATCTCGGTCGCAGCAGCCTCCAAACTGCTCGCTAACATGGTGTATCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022803.6 |
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