Pregenerated sensors for PSMB4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000005779Ensembl transcript IDs: ENSMUST00000005923.7
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | CAGCGAACACTTCAAACGACTGATTTATTTTACAAAAGTCTGCCTTaGAGCCAGCTACAGTCACGTTTAGAAGAGCAAAGCTTCAACACT | + |
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Preference number: 2 (lower is better) Translates to: QRTLQTTDLFYKSLP*SQLQSRLEEQSFNT Trigger: AGTGTTGAAGCTTTGCTCTTCTAAACGTGACTGTAGCTGGCTCAAAGGCAGACTTTTGTAAAATAAATCAGTCGTTTGAAGTGTTCGCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS-3UTR CCA 90 bp | CCAGAAGCTTTTACCTCTAGCTTTTGGGAGGCAGATTTCTGCGTTCCAGGCAAGGCGGTAAAACTGCCCTaGAGCCGGACCCCCGGCCCA | + |
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Preference number: 4 (lower is better) Translates to: PEAFTSSFWEADFCVPGKAVKLP*SRTPGP Trigger: TGGGCCGGGGGTCCGGCTCCAGGGCAGTTTTACCGC...CTTGCCTGGAACGCAGAAATCTGCCTCCCAAAAGCTAGAGGTAAAAGCTTCTGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS-3UTR CCA 90 bp | CGAACACTTCAAACGACTGATTTATTTTACAAAAGTCTGCCTTTGAGCCAGCTAGGACCCCCGGCCCAGTaGCCAGCCCGTGACTCCCAA | + |
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Preference number: 4 (lower is better) Translates to: RTLQTTDLFYKSLPLSQLGPPAQ*PARDSQ Trigger: TTGGGAGTCACGGGCTGGCCACTGGGCCGGGGGTCC...TAGCTGGCTCAAAGGCAGACTTTTGTAAAATAAATCAGTCGTTTGAAGTGTTCG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS-3UTR GCA 90 bp | CACACATTAAGACTTAAATGGTTCTCTCCAGGAAAGGAAACAGCACGGACATGGGGAGCCCAGCATGTCTaGAGCAATCACCACTCCGCC | + |
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Preference number: 4 (lower is better) Translates to: HTLRLKWFSPGKETARTWGAQHV*SNHHSA Trigger: GGCGGAGTGGTGATTGCTGCAGACATGCTGGGCTCC...CCATGTCCGTGCTGTTTCCTTTCCTGGAGAGAACCATTTAAGTCTTAATGTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS-3UTR TCA 90 bp | GCACACACATTAAGACTTAAATGGTTCTCTCCAGGAAAGGAAACAGCACGGACACAGCATAGCCTCCAATaGCCATGGTGTTCCACAGGG | + |
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Preference number: 4 (lower is better) Translates to: AHTLRLKWFSPGKETARTQHSLQ*PWCSTG Trigger: CCCTGTGGAACACCATGGTCATTGGAGGCTATGCTG...TGTCCGTGCTGTTTCCTTTCCTGGAGAGAACCATTTAAGTCTTAATGTGTGTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS-3UTR TCA 90 bp | CACACATTAAGACTTAAATGGTTCTCTCCAGGAAAGGAAACAGCACGGACATGGGGCTCTTGTCAACCATaGATGAATAGCTCTAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: HTLRLKWFSPGKETARTWGSCQP*MNSSRA Trigger: AGCCCTAGAGCTATTCATTCATGGTTGACAAGAGCC...CCATGTCCGTGCTGTTTCCTTTCCTGGAGAGAACCATTTAAGTCTTAATGTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS-3UTR TCA 90 bp | TGTGACCATGTTAGAATAAACACTGAATTGCCAGCTATGCCAGAAGCTTTTACCAAGCCACTGATCATGTaGGCGATGTCCCAGTTGGTC | + |
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Preference number: 4 (lower is better) Translates to: CDHVRINTELPAMPEAFTKPLIM*AMSQLV Trigger: GACCAACTGGGACATCGCTCACATGATCAGTGGCTT...GGTAAAAGCTTCTGGCATAGCTGGCAATTCAGTGTTTATTCTAACATGGTCACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS-3UTR CCA 90 bp | ACACTTCAAACGACTGATTTATTTTACAAAAGTCTGCCTTTGAGCCAGCTACAGACAGGGGATTCATCTTaGAGCGGCGGCTGTACATGG | + |
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Preference number: 4 (lower is better) Translates to: TLQTTDLFYKSLPLSQLQTGDSS*SGGCTW Trigger: CCATGTACAGCCGCCGCTCCAAGATGAATCCCCTGT...CTGTAGCTGGCTCAAAGGCAGACTTTTGTAAAATAAATCAGTCGTTTGAAGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS-3UTR CCA 90 bp | CCAGAAGCTTTTACCTCTAGCTTTTGGGAGGCAGATTTCTGCGTTCCAGGCAAGCCTTTTCAGTCACAGTaGCAATTTGAAACCGGTTAT | + |
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Preference number: 4 (lower is better) Translates to: PEAFTSSFWEADFCVPGKPFQSQ*QFETGY Trigger: ATAACCGGTTTCAAATTGCCACTGTGACTGAAAAGG...CTTGCCTGGAACGCAGAAATCTGCCTCCCAAAAGCTAGAGGTAAAAGCTTCTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS-3UTR GCA 90 bp | ACACTTCAAACGACTGATTTATTTTACAAAAGTCTGCCTTTGAGCCAGCTACAGAGGCTGAGCCAAGTATaGACCATAACCAGTGGCCAG | + |
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Preference number: 4 (lower is better) Translates to: TLQTTDLFYKSLPLSQLQRLSQV*TITSGQ Trigger: CTGGCCACTGGTTATGGTGCATACTTGGCTCAGCCT...CTGTAGCTGGCTCAAAGGCAGACTTTTGTAAAATAAATCAGTCGTTTGAAGTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS-3UTR GCA 90 bp | AATCCAACTCAGCGAACACTTCAAACGACTGATTTATTTTACAAAAGTCTGCCTAGTACAGCACTCTCATaGAGCGCTCCACAAGCTCCC | + |
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Preference number: 4 (lower is better) Translates to: NPTQRTLQTTDLFYKSLPSTALS*SAPQAP Trigger: GGGAGCTTGTGGAGCGCTGCATGAGAGTGCTGTACT...AGGCAGACTTTTGTAAAATAAATCAGTCGTTTGAAGTGTTCGCTGAGTTGGATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS-3UTR TCA 90 bp | CGAACACTTCAAACGACTGATTTATTTTACAAAAGTCTGCCTTTGAGCCAGCTAATAACCAGTGGCCAGTaGAGGGGCTTCATAAGCTAC | + |
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Preference number: 4 (lower is better) Translates to: RTLQTTDLFYKSLPLSQLITSGQ*RGFISY Trigger: GTAGCTTATGAAGCCCCTTCACTGGCCACTGGTTAT...TAGCTGGCTCAAAGGCAGACTTTTGTAAAATAAATCAGTCGTTTGAAGTGTTCG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS-3UTR CCA 90 bp | ACGACTGATTTATTTTACAAAAGTCTGCCTTTGAGCCAGCTACAGTCACGTTTAAGCGGCGGCTGTACATaGCTCTTGTCAACCATGAAT | + |
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Preference number: 4 (lower is better) Translates to: TTDLFYKSLPLSQLQSRLSGGCT*LLSTMN Trigger: ATTCATGGTTGACAAGAGCCATGTACAGCCGCCGCT...TAAACGTGACTGTAGCTGGCTCAAAGGCAGACTTTTGTAAAATAAATCAGTCGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS-3UTR CCA 90 bp | CGAACACTTCAAACGACTGATTTATTTTACAAAAGTCTGCCTTTGAGCCAGCTAATGCACCATAACCAGTaGCCAGTGAAGGGGCTTCAT | + |
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Preference number: 4 (lower is better) Translates to: RTLQTTDLFYKSLPLSQLMHHNQ*PVKGLH Trigger: ATGAAGCCCCTTCACTGGCCACTGGTTATGGTGCAT...TAGCTGGCTCAAAGGCAGACTTTTGTAAAATAAATCAGTCGTTTGAAGTGTTCG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| 3UTR CAA 72 bp | CTTCAAACGACTGATTTATTTTACAAAAGTCTGCCTTaGAGCCAGCTACAGTCACGTTTAGAAGAGCAAAGC | + |
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Preference number: 4 (lower is better) Translates to: LQTTDLFYKSLP*SQLQSRLEEQS Trigger: GCTTTGCTCTTCTAAACGTGACTGTAGCTGGCTCAAAGGCAGACTTTTGTAAAATAAATCAGTCGTTTGAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS-3UTR CCA 90 bp | CGAACACTTCAAACGACTGATTTATTTTACAAAAGTCTGCCTTTGAGCCAGCTATCATCAATCACCATCTaGCCGAGAACTTGTTTCAAA | + |
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Preference number: 4 (lower is better) Translates to: RTLQTTDLFYKSLPLSQLSSITI*PRTCFK Trigger: TTTGAAACAAGTTCTCGGCCAGATGGTGATTGATGA...TAGCTGGCTCAAAGGCAGACTTTTGTAAAATAAATCAGTCGTTTGAAGTGTTCG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS CCA 90 bp | TCGAACTTCACCCCGAGTACCGATGTCCCGGTCACCATGGGGTTCTaGGTCCGAGTGATGGGACCCTCGCAGGGCGCCGACGCCGGGTCC | + |
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Preference number: 5 (lower is better) Translates to: SNFTPSTDVPVTMGF*VRVMGPSQGADAGS Trigger: GGACCCGGCGTCGGCGCCCTGCGAGGGTCCCATCACTCGGACCCAGAACCCCATGGTGACCGGGACATCGGTACTCGGGGTGAAGTTCGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS GCA 90 bp | GATATTGCGGAAACGAGCCAGGGAGCCGTAGGAGCCCAGCATGTCTaGAGCAATCACCACTCCGCCGTCGAACTTCACCCCGAGTACCGA | + |
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Preference number: 5 (lower is better) Translates to: DIAETSQGAVGAQHV*SNHHSAVELHPEYR Trigger: TCGGTACTCGGGGTGAAGTTCGACGGCGGAGTGGTGATTGCTGCAGACATGCTGGGCTCCTACGGCTCCCTGGCTCGTTTCCGCAATATC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS GCA 90 bp | GAAACCGGTTATACGAACGGGCATCTCTGTAGTACAGCACTCTCATaGAGCGCTCCACAAGCTCCCGAGCCTCAGTCTGACTCAGCACTG | + |
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Preference number: 5 (lower is better) Translates to: ETGYTNGHLCSTALS*SAPQAPEPQSDSAL Trigger: CAGTGCTGAGTCAGACTGAGGCTCGGGAGCTTGTGGAGCGCTGCATGAGAGTGCTGTACTACAGAGATGCCCGTTCGTATAACCGGTTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS TCA 90 bp | TGTCCACATAACCGAGGAAGCTTTCTCCGTCAGCATAGCCTCCAATaGCCATGGTGTTCCACAGGGGATTCATCTTGGAGCGGCGGCTGT | + |
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Preference number: 5 (lower is better) Translates to: CPHNRGSFLRQHSLQ*PWCSTGDSSWSGGC Trigger: ACAGCCGCCGCTCCAAGATGAATCCCCTGTGGAACACCATGGTCATTGGAGGCTATGCTGACGGAGAAAGCTTCCTCGGTTATGTGGACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS TCA 90 bp | TCGAAGCAGAGGCTGAGCCAAGTATGCACCATAACCAGTGGCCAGTaGAGGGGCTTCATAAGCTACACCAAGCATGTCCACATAACCGAG | + |
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Preference number: 5 (lower is better) Translates to: SKQRLSQVCTITSGQ*RGFISYTKHVHITE Trigger: CTCGGTTATGTGGACATGCTTGGTGTAGCTTATGAAGCCCCTTCACTGGCCACTGGTTATGGTGCATACTTGGCTCAGCCTCTGCTTCGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS-3UTR CAA 90 bp | CTATGCCAGAAGCTTTTACCTCTAGCTTTTGGGAGGCAGATTTCTGCGTTCCAGCACAGGGGATTCATCTaGGAGCGGCGGCTGTACATG | + |
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Preference number: 5 (lower is better) Translates to: LCQKLLPLAFGRQISAFQHRGFI*ERRLYM Trigger: CATGTACAGCCGCCGCTCCAAGATGAATCCCCTGTG...CTGGAACGCAGAAATCTGCCTCCCAAAAGCTAGAGGTAAAAGCTTCTGGCATAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS TCA 90 bp | GGGATTCATCTTGGAGCGGCGGCTGTACATGGCTCTTGTCAACCATaGATGAATAGCTCTAGGGCTATAGCTGTGTCCATCTCCCAACAG | + |
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Preference number: 5 (lower is better) Translates to: GIHLGAAAVHGSCQP*MNSSRAIAVSISQQ Trigger: CTGTTGGGAGATGGACACAGCTATAGCCCTAGAGCTATTCATTCATGGTTGACAAGAGCCATGTACAGCCGCCGCTCCAAGATGAATCCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS GCA 90 bp | TCATTCAAAGCCACTGATCATGTGAGCGATGTCCCAGTTGGTCTGTaGGGACAGCGGTCCTTCTATCTCGACACCCTTTTCAGTCACAGT | + |
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Preference number: 5 (lower is better) Translates to: SFKATDHVSDVPVGL*GQRSFYLDTLFSHS Trigger: ACTGTGACTGAAAAGGGTGTCGAGATAGAAGGACCGCTGTCCGCACAGACCAACTGGGACATCGCTCACATGATCAGTGGCTTTGAATGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS CCA 90 bp | GAACTTCTCGAAGCAGAGGCTGAGCCAAGTATGCACCATAACCAGTaGCCAGTGAAGGGGCTTCATAAGCTACACCAAGCATGTCCACAT | + |
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Preference number: 5 (lower is better) Translates to: ELLEAEAEPSMHHNQ*PVKGLHKLHQACPH Trigger: ATGTGGACATGCTTGGTGTAGCTTATGAAGCCCCTTCACTGGCCACTGGTTATGGTGCATACTTGGCTCAGCCTCTGCTTCGAGAAGTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS CCA 90 bp | GTGCGGACAGCGGTCCTTCTATCTCGACACCCTTTTCAGTCACAGTaGCAATTTGAAACCGGTTATACGAACGGGCATCTCTGTAGTACA | + |
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Preference number: 5 (lower is better) Translates to: VRTAVLLSRHPFQSQ*QFETGYTNGHLCST Trigger: TGTACTACAGAGATGCCCGTTCGTATAACCGGTTTCAAATTGCCACTGTGACTGAAAAGGGTGTCGAGATAGAAGGACCGCTGTCCGCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS-3UTR CAA 90 bp | GCCTTTGAGCCAGCTACAGTCACGTTTAGAAGAGCAAAGCTTCAACACTCTGGAAGCATAGTGCTGTCGTaGACTCGCATAATACGAGAG | + |
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Preference number: 5 (lower is better) Translates to: AFEPATVTFRRAKLQHSGSIVLS*TRIIRE Trigger: CTCTCGTATTATGCGAGTCAACGACAGCACTATGCT...TCCAGAGTGTTGAAGCTTTGCTCTTCTAAACGTGACTGTAGCTGGCTCAAAGGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS-3UTR CAA 90 bp | CCAGAAGCTTTTACCTCTAGCTTTTGGGAGGCAGATTTCTGCGTTCCAGGCAAGAGTCACAGTGGCAATTaGAAACCGGTTATACGAACG | + |
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Preference number: 5 (lower is better) Translates to: PEAFTSSFWEADFCVPGKSHSGN*KPVIRT Trigger: CGTTCGTATAACCGGTTTCAAATTGCCACTGTGACT...CTTGCCTGGAACGCAGAAATCTGCCTCCCAAAAGCTAGAGGTAAAAGCTTCTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS-3UTR CAA 90 bp | AAGTCTGCCTTTGAGCCAGCTACAGTCACGTTTAGAAGAGCAAAGCTTCAACACCATCTGGCCGAGAACTaGTTTCAAATACTGGAAATC | + |
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Preference number: 5 (lower is better) Translates to: KSAFEPATVTFRRAKLQHHLAEN*FQILEI Trigger: GATTTCCAGTATTTGAAACAAGTTCTCGGCCAGATG...GTGTTGAAGCTTTGCTCTTCTAAACGTGACTGTAGCTGGCTCAAAGGCAGACTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS-3UTR CAA 90 bp | ACACTTCAAACGACTGATTTATTTTACAAAAGTCTGCCTTTGAGCCAGCTACAGATAATACGAGAGATATaGCGGAAACGAGCCAGGGAG | + |
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Preference number: 5 (lower is better) Translates to: TLQTTDLFYKSLPLSQLQIIREI*RKRARE Trigger: CTCCCTGGCTCGTTTCCGCAATATCTCTCGTATTAT...CTGTAGCTGGCTCAAAGGCAGACTTTTGTAAAATAAATCAGTCGTTTGAAGTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS TCA 72 bp | CCGATGTCCCGGTCACCATGGGGTTCTGGGTCCGAGTaGTGGGACCCTCGCAGGGCGCCGACGCCGGGTCCA | + |
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Preference number: 6 (lower is better) Translates to: PMSRSPWGSGSE*WDPRRAPTPGP Trigger: TGGACCCGGCGTCGGCGCCCTGCGAGGGTCCCATCACTCGGACCCAGAACCCCATGGTGACCGGGACATCGG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS CCA 72 bp | ACCCCGAGTACCGATGTCCCGGTCACCATGGGGTTCTaGGTCCGAGTGATGGGACCCTCGCAGGGCGCCGAC | + |
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Preference number: 6 (lower is better) Translates to: TPSTDVPVTMGF*VRVMGPSQGAD Trigger: GTCGGCGCCCTGCGAGGGTCCCATCACTCGGACCCAGAACCCCATGGTGACCGGGACATCGGTACTCGGGGT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS GCA 72 bp | TATACGAACGGGCATCTCTGTAGTACAGCACTCTCATaGAGCGCTCCACAAGCTCCCGAGCCTCAGTCTGAC | + |
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Preference number: 6 (lower is better) Translates to: YTNGHLCSTALS*SAPQAPEPQSD Trigger: GTCAGACTGAGGCTCGGGAGCTTGTGGAGCGCTGCATGAGAGTGCTGTACTACAGAGATGCCCGTTCGTATA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS GCA 72 bp | GCCACTGATCATGTGAGCGATGTCCCAGTTGGTCTGTaGGGACAGCGGTCCTTCTATCTCGACACCCTTTTC | + |
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Preference number: 6 (lower is better) Translates to: ATDHVSDVPVGL*GQRSFYLDTLF Trigger: GAAAAGGGTGTCGAGATAGAAGGACCGCTGTCCGCACAGACCAACTGGGACATCGCTCACATGATCAGTGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS CAA 72 bp | CCTCCAATGACCATGGTGTTCCACAGGGGATTCATCTaGGAGCGGCGGCTGTACATGGCTCTTGTCAACCAT | + |
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Preference number: 6 (lower is better) Translates to: PPMTMVFHRGFI*ERRLYMALVNH Trigger: ATGGTTGACAAGAGCCATGTACAGCCGCCGCTCCAAGATGAATCCCCTGTGGAACACCATGGTCATTGGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS TCA 72 bp | AACCGAGGAAGCTTTCTCCGTCAGCATAGCCTCCAATaGCCATGGTGTTCCACAGGGGATTCATCTTGGAGC | + |
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Preference number: 6 (lower is better) Translates to: NRGSFLRQHSLQ*PWCSTGDSSWS Trigger: GCTCCAAGATGAATCCCCTGTGGAACACCATGGTCATTGGAGGCTATGCTGACGGAGAAAGCTTCCTCGGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS TCA 72 bp | AGGCTGAGCCAAGTATGCACCATAACCAGTGGCCAGTaGAGGGGCTTCATAAGCTACACCAAGCATGTCCAC | + |
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Preference number: 6 (lower is better) Translates to: RLSQVCTITSGQ*RGFISYTKHVH Trigger: GTGGACATGCTTGGTGTAGCTTATGAAGCCCCTTCACTGGCCACTGGTTATGGTGCATACTTGGCTCAGCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS TCA 72 bp | CTTGGAGCGGCGGCTGTACATGGCTCTTGTCAACCATaGATGAATAGCTCTAGGGCTATAGCTGTGTCCATC | + |
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Preference number: 6 (lower is better) Translates to: LGAAAVHGSCQP*MNSSRAIAVSI Trigger: GATGGACACAGCTATAGCCCTAGAGCTATTCATTCATGGTTGACAAGAGCCATGTACAGCCGCCGCTCCAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS CCA 72 bp | GCGGTCCTTCTATCTCGACACCCTTTTCAGTCACAGTaGCAATTTGAAACCGGTTATACGAACGGGCATCTC | + |
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Preference number: 6 (lower is better) Translates to: AVLLSRHPFQSQ*QFETGYTNGHL Trigger: GAGATGCCCGTTCGTATAACCGGTTTCAAATTGCCACTGTGACTGAAAAGGGTGTCGAGATAGAAGGACCGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS CAA 90 bp | CAGCGGTCCTTCTATCTCGACACCCTTTTCAGTCACAGTGGCAATTaGAAACCGGTTATACGAACGGGCATCTCTGTAGTACAGCACTCT | + |
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Preference number: 6 (lower is better) Translates to: QRSFYLDTLFSHSGN*KPVIRTGISVVQHS Trigger: AGAGTGCTGTACTACAGAGATGCCCGTTCGTATAACCGGTTTCAAATTGCCACTGTGACTGAAAAGGGTGTCGAGATAGAAGGACCGCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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| CDS CAA 72 bp | TTCTATCTCGACACCCTTTTCAGTCACAGTGGCAATTaGAAACCGGTTATACGAACGGGCATCTCTGTAGTA | + |
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Preference number: 6 (lower is better) Translates to: FYLDTLFSHSGN*KPVIRTGISVV Trigger: TACTACAGAGATGCCCGTTCGTATAACCGGTTTCAAATTGCCACTGTGACTGAAAAGGGTGTCGAGATAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005923.7 |
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