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Pregenerated sensors for PSMB2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028837

Ensembl transcript IDs: ENSMUST00000030642.3

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp AGGAGCCTTAGCCAAGGCTGCCAGGTAGTCCATGTAGTAAAGGGCTaGCCCTTCATGCTCGTCATAGCCAGCCAGGAGGAGGTTCACATG +
Preference number: 5 (lower is better)
Translates to: RSLSQGCQVVHVVKG*PFMLVIASQEEVHM
Trigger: CATGTGAACCTCCTCCTGGCTGGCTATGACGAGCATGAAGGGCCAGCCCTTTACTACATGGACTACCTGGCAGCCTTGGCTAAGGCTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030642.3
CDS GCA 90 bp AAAGGCACCATAGCCATGAGCTGCAAAAGGAGCCTTAGCCAAGGCTaGCAGGTAGTCCATGTAGTAAAGGGCTGGCCCTTCATGCTCGTC +
Preference number: 5 (lower is better)
Translates to: KGTIAMSCKRSLSQG*QVVHVVKGWPFMLV
Trigger: GACGAGCATGAAGGGCCAGCCCTTTACTACATGGACTACCTGGCAGCCTTGGCTAAGGCTCCTTTTGCAGCTCATGGCTATGGTGCCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030642.3
CDS GCA 90 bp TCGGTCAAGGATGCTGAGAGTCAGAAAGGCACCATAGCCATGAGCTaGAAAAGGAGCCTTAGCCAAGGCTGCCAGGTAGTCCATGTAGTA +
Preference number: 5 (lower is better)
Translates to: SVKDAESQKGTIAMS*KRSLSQGCQVVHVV
Trigger: TACTACATGGACTACCTGGCAGCCTTGGCTAAGGCTCCTTTTGCAGCTCATGGCTATGGTGCCTTTCTGACTCTCAGCATCCTTGACCGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030642.3
CDS GCA 90 bp CCGACTCCGAAGACAGTCAGCCAGGTTCCGCCGTGTGAAGTTAGCTaGTGCTGTGGGAGACAATTCATATCCATTCCGCATTTTATAAAG +
Preference number: 5 (lower is better)
Translates to: PTPKTVSQVPPCEVS*CCGRQFISIPHFIK
Trigger: CTTTATAAAATGCGGAATGGATATGAATTGTCTCCCACAGCAGCAGCTAACTTCACACGGCGGAACCTGGCTGACTGTCTTCGGAGTCGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030642.3
CDS GCA 90 bp ACTCCGAAGACAGTCAGCCAGGTTCCGCCGTGTGAAGTTAGCTGCTaGTGTGGGAGACAATTCATATCCATTCCGCATTTTATAAAGTTG +
Preference number: 5 (lower is better)
Translates to: TPKTVSQVPPCEVSC*CGRQFISIPHFIKL
Trigger: CAACTTTATAAAATGCGGAATGGATATGAATTGTCTCCCACAGCAGCAGCTAACTTCACACGGCGGAACCTGGCTGACTGTCTTCGGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030642.3
CDS CCA 72 bp AGCCAAGGCTGCCAGGTAGTCCATGTAGTAAAGGGCTaGCCCTTCATGCTCGTCATAGCCAGCCAGGAGGAG +
Preference number: 6 (lower is better)
Translates to: SQGCQVVHVVKG*PFMLVIASQEE
Trigger: CTCCTCCTGGCTGGCTATGACGAGCATGAAGGGCCAGCCCTTTACTACATGGACTACCTGGCAGCCTTGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030642.3
CDS GCA 72 bp ATAGCCATGAGCTGCAAAAGGAGCCTTAGCCAAGGCTaGCAGGTAGTCCATGTAGTAAAGGGCTGGCCCTTC +
Preference number: 6 (lower is better)
Translates to: IAMSCKRSLSQG*QVVHVVKGWPF
Trigger: GAAGGGCCAGCCCTTTACTACATGGACTACCTGGCAGCCTTGGCTAAGGCTCCTTTTGCAGCTCATGGCTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030642.3
CDS GCA 72 bp ACATCTTGTCATGATCGTCCTTCATCTGGACAATATTaGTGGCGGCCACTCGGTCGGAAGCGACGAGGACAT +
Preference number: 6 (lower is better)
Translates to: TSCHDRPSSGQY*WRPLGRKRRGH
Trigger: ATGTCCTCGTCGCTTCCGACCGAGTGGCCGCCAGCAATATTGTCCAGATGAAGGACGATCATGACAAGATGT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030642.3
CDS CCA 72 bp TCTTGTCATGATCGTCCTTCATCTGGACAATATTGCTaGCGGCCACTCGGTCGGAAGCGACGAGGACATAGT +
Preference number: 6 (lower is better)
Translates to: SCHDRPSSGQYC*RPLGRKRRGHS
Trigger: ACTATGTCCTCGTCGCTTCCGACCGAGTGGCCGCCAGCAATATTGTCCAGATGAAGGACGATCATGACAAGA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030642.3
CDS TCA 72 bp CAGACACTTCCTAAGAAGCTCCACTGCCCTCTCACGTaGGATGGTAGGTGTGTAGTATCGGTCAAGGATGCT +
Preference number: 6 (lower is better)
Translates to: QTLPKKLHCPLT*DGRCVVSVKDA
Trigger: AGCATCCTTGACCGATACTACACACCTACCATCTCACGTGAGAGGGCAGTGGAGCTTCTTAGGAAGTGTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030642.3
CDS GCA 72 bp AAGACAGTCAGCCAGGTTCCGCCGTGTGAAGTTAGCTaGTGCTGTGGGAGACAATTCATATCCATTCCGCAT +
Preference number: 6 (lower is better)
Translates to: KTVSQVPPCEVS*CCGRQFISIPH
Trigger: ATGCGGAATGGATATGAATTGTCTCCCACAGCAGCAGCTAACTTCACACGGCGGAACCTGGCTGACTGTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030642.3
CDS CCA 72 bp GAGTCCCGCTTAGGGAAGGCAATGTTCTCCAGATTGTaGATGCCATCTTTGTCAATGACCCGGACACTGAAG +
Preference number: 6 (lower is better)
Translates to: ESRLGKAMFSRL*MPSLSMTRTLK
Trigger: CTTCAGTGTCCGGGTCATTGACAAAGATGGCATCCACAATCTGGAGAACATTGCCTTCCCTAAGCGGGACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030642.3
CDS CAA 72 bp GGGAAGGCAATGTTCTCCAGATTGTGGATGCCATCTTaGTCAATGACCCGGACACTGAAGGTGGGCAGATTC +
Preference number: 6 (lower is better)
Translates to: GKAMFSRLWMPS*SMTRTLKVGRF
Trigger: GAATCTGCCCACCTTCAGTGTCCGGGTCATTGACAAAGATGGCATCCACAATCTGGAGAACATTGCCTTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030642.3
CDS CAA 90 bp TCCCGCTTAGGGAAGGCAATGTTCTCCAGATTGTGGATGCCATCTTaGTCAATGACCCGGACACTGAAGGTGGGCAGATTCAAGATGAAG +
Preference number: 6 (lower is better)
Translates to: SRLGKAMFSRLWMPS*SMTRTLKVGRFKMK
Trigger: CTTCATCTTGAATCTGCCCACCTTCAGTGTCCGGGTCATTGACAAAGATGGCATCCACAATCTGGAGAACATTGCCTTCCCTAAGCGGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030642.3
CDS GCA 72 bp ACAGTCAGCCAGGTTCCGCCGTGTGAAGTTAGCTGCTaGTGTGGGAGACAATTCATATCCATTCCGCATTTT +
Preference number: 6 (lower is better)
Translates to: TVSQVPPCEVSC*CGRQFISIPHF
Trigger: AAAATGCGGAATGGATATGAATTGTCTCCCACAGCAGCAGCTAACTTCACACGGCGGAACCTGGCTGACTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030642.3