RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PSMB10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031897

Ensembl transcript IDs: ENSMUST00000034369.10

Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp CCACGTGGCCTTGGTACCGGAAAAGCGTCTGGCGCAGGATACGGGTaGCCGTGGCCACCCGAGGCTCACGGCCGGTGGACAGCGCATGTA +
Preference number: 5 (lower is better)
Translates to: PRGLGTGKASGAGYG*PWPPEAHGRWTAHV
Trigger: TACATGCGCTGTCCACCGGCCGTGAGCCTCGGGTGGCCACGGTCACCCGTATCCTGCGCCAGACGCTTTTCCGGTACCAAGGCCACGTGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034369.10
CDS GCA 90 bp CGCAGCCTCCAGCGTCATGTTTGGCTGGAACCGGTCTTCCAACAGTaGCACGGCTGCACCCTGACCAGAGCCAAGGGCAGTAAAGGGCAG +
Preference number: 5 (lower is better)
Translates to: RSLQRHVWLEPVFQQ*HGCTLTRAKGSKGQ
Trigger: CTGCCCTTTACTGCCCTTGGCTCTGGTCAGGGTGCAGCCGTGGCACTGTTGGAAGACCGGTTCCAGCCAAACATGACGCTGGAGGCTGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034369.10
CDS GCA 90 bp CGGCCAGCTCTCTGCACAGGCTCGGTGGGGGTGCTCAATGCTCTCTaGAGCTTGGCACCCCCTGCAGTGATCACACAGGCATCCACATTG +
Preference number: 5 (lower is better)
Translates to: RPALCTGSVGVLNAL*SLAPPAVITQASTL
Trigger: CAATGTGGATGCCTGTGTGATCACTGCAGGGGGTGCCAAGCTGCAGAGAGCATTGAGCACCCCCACCGAGCCTGTGCAGAGAGCTGGCCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000034369.10
CDS GCA 90 bp TCCATCTCGGAACACAAGCCCCGCGATGGTAGTCCCGGTCTTGCGTaGATGAGGAACCCGAAGTCCCGGAAGGACGTGTTCCAAGGACGC +
Preference number: 5 (lower is better)
Translates to: SISEHKPRDGSPGLA*MRNPKSRKDVFQGR
Trigger: GCGTCCTTGGAACACGTCCTTCCGGGACTTCGGGTTCCTCATGCACGCAAGACCGGGACTACCATCGCGGGGCTTGTGTTCCGAGATGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034369.10
CDS GCA 90 bp ACAGGCATCCACATTGCCCCCAGAGCCCAGGTCACTCAGGATCCCTaGTGTGATGGCTTCCACCAACAGCTCTTGCGCAGCCTCCAGCGT +
Preference number: 5 (lower is better)
Translates to: TGIHIAPRAQVTQDP*CDGFHQQLLRSLQR
Trigger: ACGCTGGAGGCTGCGCAAGAGCTGTTGGTGGAAGCCATCACAGCAGGGATCCTGAGTGACCTGGGCTCTGGGGGCAATGTGGATGCCTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034369.10
CDS TCA 90 bp TCTCGGAACACAAGCCCCGCGATGGTAGTCCCGGTCTTGCGTGCATaGGGAACCCGAAGTCCCGGAAGGACGTGTTCCAAGGACGCATTC +
Preference number: 5 (lower is better)
Translates to: SRNTSPAMVVPVLRA*GTRSPGRTCSKDAF
Trigger: GAATGCGTCCTTGGAACACGTCCTTCCGGGACTTCGGGTTCCTCATGCACGCAAGACCGGGACTACCATCGCGGGGCTTGTGTTCCGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034369.10
CDS CCA 90 bp GAAGTTCCAGGGTCAGGGGTCTCACTTCCCGGGTCAGGACAGGTGTaGTTCCAGGAGCAAATCGGTAACGGCCAGCTCTCTGCACAGGCT +
Preference number: 5 (lower is better)
Translates to: EVPGSGVSLPGSGQV*FQEQIGNGQLSAQA
Trigger: AGCCTGTGCAGAGAGCTGGCCGTTACCGATTTGCTCCTGGAACCACACCTGTCCTGACCCGGGAAGTGAGACCCCTGACCCTGGAACTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034369.10
CDS CCA 90 bp GGAACCCGAAGTCCCGGAAGGACGTGTTCCAAGGACGCATTCCTCTaGCAGTTCTCGAAAGAGAAGCCTCCTGTGGGTTCCACTGCCTGC +
Preference number: 5 (lower is better)
Translates to: GTRSPGRTCSKDAFL*QFSKEKPPVGSTAC
Trigger: GCAGGCAGTGGAACCCACAGGAGGCTTCTCTTTCGAGAACTGCCAGAGGAATGCGTCCTTGGAACACGTCCTTCCGGGACTTCGGGTTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034369.10
CDS CCA 90 bp ACCAGAGCCAAGGGCAGTAAAGGGCAGACGGCTGTAGGAACCATGTaGGTGCACCTCGTAGAGCTGAGGTCCGTTCAAATCAACCCCGCC +
Preference number: 5 (lower is better)
Translates to: TRAKGSKGQTAVGTM*VHLVELRSVQINPA
Trigger: GGCGGGGTTGATTTGAACGGACCTCAGCTCTACGAGGTGCACCCACATGGTTCCTACAGCCGTCTGCCCTTTACTGCCCTTGGCTCTGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034369.10
CDS CCA 72 bp GATGCCCCCACGTGGCCTTGGTACCGGAAAAGCGTCTaGCGCAGGATACGGGTGACCGTGGCCACCCGAGGC +
Preference number: 6 (lower is better)
Translates to: DAPTWPWYRKSV*RRIRVTVATRG
Trigger: GCCTCGGGTGGCCACGGTCACCCGTATCCTGCGCCAGACGCTTTTCCGGTACCAAGGCCACGTGGGGGCATC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034369.10
CDS TCA 72 bp CTTGGTACCGGAAAAGCGTCTGGCGCAGGATACGGGTaGCCGTGGCCACCCGAGGCTCACGGCCGGTGGACA +
Preference number: 6 (lower is better)
Translates to: LGTGKASGAGYG*PWPPEAHGRWT
Trigger: TGTCCACCGGCCGTGAGCCTCGGGTGGCCACGGTCACCCGTATCCTGCGCCAGACGCTTTTCCGGTACCAAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034369.10
CDS GCA 72 bp GCCAGCTCTCTGCACAGGCTCGGTGGGGGTGCTCAATaGTCTCTGCAGCTTGGCACCCCCTGCAGTGATCAC +
Preference number: 6 (lower is better)
Translates to: ASSLHRLGGGAQ*SLQLGTPCSDH
Trigger: GTGATCACTGCAGGGGGTGCCAAGCTGCAGAGAGCATTGAGCACCCCCACCGAGCCTGTGCAGAGAGCTGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000034369.10
CDS GCA 72 bp CTCTGCACAGGCTCGGTGGGGGTGCTCAATGCTCTCTaGAGCTTGGCACCCCCTGCAGTGATCACACAGGCA +
Preference number: 6 (lower is better)
Translates to: LCTGSVGVLNAL*SLAPPAVITQA
Trigger: TGCCTGTGTGATCACTGCAGGGGGTGCCAAGCTGCAGAGAGCATTGAGCACCCCCACCGAGCCTGTGCAGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000034369.10
CDS CCA 72 bp CAAATCGGTAACGGCCAGCTCTCTGCACAGGCTCGGTaGGGGTGCTCAATGCTCTCTGCAGCTTGGCACCCC +
Preference number: 6 (lower is better)
Translates to: QIGNGQLSAQAR*GCSMLSAAWHP
Trigger: GGGGTGCCAAGCTGCAGAGAGCATTGAGCACCCCCACCGAGCCTGTGCAGAGAGCTGGCCGTTACCGATTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034369.10
CDS CAA 90 bp CTCTGCAGCTTGGCACCCCCTGCAGTGATCACACAGGCATCCACATaGCCCCCAGAGCCCAGGTCACTCAGGATCCCTGCTGTGATGGCT +
Preference number: 6 (lower is better)
Translates to: LCSLAPPAVITQAST*PPEPRSLRIPAVMA
Trigger: AGCCATCACAGCAGGGATCCTGAGTGACCTGGGCTCTGGGGGCAATGTGGATGCCTGTGTGATCACTGCAGGGGGTGCCAAGCTGCAGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000034369.10
CDS TCA 72 bp ACAAGCCCCGCGATGGTAGTCCCGGTCTTGCGTGCATaGGGAACCCGAAGTCCCGGAAGGACGTGTTCCAAG +
Preference number: 6 (lower is better)
Translates to: TSPAMVVPVLRA*GTRSPGRTCSK
Trigger: CTTGGAACACGTCCTTCCGGGACTTCGGGTTCCTCATGCACGCAAGACCGGGACTACCATCGCGGGGCTTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034369.10
CDS GCA 72 bp GAACACAAGCCCCGCGATGGTAGTCCCGGTCTTGCGTaGATGAGGAACCCGAAGTCCCGGAAGGACGTGTTC +
Preference number: 6 (lower is better)
Translates to: EHKPRDGSPGLA*MRNPKSRKDVF
Trigger: GAACACGTCCTTCCGGGACTTCGGGTTCCTCATGCACGCAAGACCGGGACTACCATCGCGGGGCTTGTGTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034369.10
CDS GCA 72 bp CACATTGCCCCCAGAGCCCAGGTCACTCAGGATCCCTaGTGTGATGGCTTCCACCAACAGCTCTTGCGCAGC +
Preference number: 6 (lower is better)
Translates to: HIAPRAQVTQDP*CDGFHQQLLRS
Trigger: GCTGCGCAAGAGCTGTTGGTGGAAGCCATCACAGCAGGGATCCTGAGTGACCTGGGCTCTGGGGGCAATGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034369.10
CDS CCA 72 bp AACAGCTCTTGCGCAGCCTCCAGCGTCATGTTTGGCTaGAACCGGTCTTCCAACAGTGCCACGGCTGCACCC +
Preference number: 6 (lower is better)
Translates to: NSSCAASSVMFG*NRSSNSATAAP
Trigger: GGGTGCAGCCGTGGCACTGTTGGAAGACCGGTTCCAGCCAAACATGACGCTGGAGGCTGCGCAAGAGCTGTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034369.10
CDS CAA 72 bp CCACCAACAGCTCTTGCGCAGCCTCCAGCGTCATGTTaGGCTGGAACCGGTCTTCCAACAGTGCCACGGCTG +
Preference number: 6 (lower is better)
Translates to: PPTALAQPPASC*AGTGLPTVPRL
Trigger: CAGCCGTGGCACTGTTGGAAGACCGGTTCCAGCCAAACATGACGCTGGAGGCTGCGCAAGAGCTGTTGGTGG
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034369.10
CDS GCA 72 bp AGGATCCCTGCTGTGATGGCTTCCACCAACAGCTCTTaGGCAGCCTCCAGCGTCATGTTTGGCTGGAACCGG +
Preference number: 6 (lower is better)
Translates to: RIPAVMASTNSS*AASSVMFGWNR
Trigger: CCGGTTCCAGCCAAACATGACGCTGGAGGCTGCGCAAGAGCTGTTGGTGGAAGCCATCACAGCAGGGATCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034369.10
CDS CAA 72 bp CAGGATCCCTGCTGTGATGGCTTCCACCAACAGCTCTaGCGCAGCCTCCAGCGTCATGTTTGGCTGGAACCG +
Preference number: 6 (lower is better)
Translates to: QDPCCDGFHQQL*RSLQRHVWLEP
Trigger: CGGTTCCAGCCAAACATGACGCTGGAGGCTGCGCAAGAGCTGTTGGTGGAAGCCATCACAGCAGGGATCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034369.10
CDS CCA 72 bp AGTCCCGGAAGGACGTGTTCCAAGGACGCATTCCTCTaGCAGTTCTCGAAAGAGAAGCCTCCTGTGGGTTCC +
Preference number: 6 (lower is better)
Translates to: SPGRTCSKDAFL*QFSKEKPPVGS
Trigger: GGAACCCACAGGAGGCTTCTCTTTCGAGAACTGCCAGAGGAATGCGTCCTTGGAACACGTCCTTCCGGGACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034369.10
CDS CCA 72 bp AAGGGCAGTAAAGGGCAGACGGCTGTAGGAACCATGTaGGTGCACCTCGTAGAGCTGAGGTCCGTTCAAATC +
Preference number: 6 (lower is better)
Translates to: KGSKGQTAVGTM*VHLVELRSVQI
Trigger: GATTTGAACGGACCTCAGCTCTACGAGGTGCACCCACATGGTTCCTACAGCCGTCTGCCCTTTACTGCCCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034369.10
CDS CAA 72 bp ATTTTAGGGGCGATGAAGTGGATCTTCTCGCAGCTTTaGTCCGCCACAACCGAATCGTTAGTGGCCCGCGTG +
Preference number: 6 (lower is better)
Translates to: ILGAMKWIFSQL*SATTESLVARV
Trigger: CACGCGGGCCACTAACGATTCGGTTGTGGCGGACAAAAGCTGCGAGAAGATCCACTTCATCGCCCCTAAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034369.10