Pregenerated sensors for PSMB10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031897Ensembl transcript IDs: ENSMUST00000034369.10
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS TCA 90 bp | CCACGTGGCCTTGGTACCGGAAAAGCGTCTGGCGCAGGATACGGGTaGCCGTGGCCACCCGAGGCTCACGGCCGGTGGACAGCGCATGTA | + |
Preference number: 5 (lower is better) Translates to: PRGLGTGKASGAGYG*PWPPEAHGRWTAHV Trigger: TACATGCGCTGTCCACCGGCCGTGAGCCTCGGGTGGCCACGGTCACCCGTATCCTGCGCCAGACGCTTTTCCGGTACCAAGGCCACGTGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034369.10 |
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CDS GCA 90 bp | CGCAGCCTCCAGCGTCATGTTTGGCTGGAACCGGTCTTCCAACAGTaGCACGGCTGCACCCTGACCAGAGCCAAGGGCAGTAAAGGGCAG | + |
Preference number: 5 (lower is better) Translates to: RSLQRHVWLEPVFQQ*HGCTLTRAKGSKGQ Trigger: CTGCCCTTTACTGCCCTTGGCTCTGGTCAGGGTGCAGCCGTGGCACTGTTGGAAGACCGGTTCCAGCCAAACATGACGCTGGAGGCTGCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034369.10 |
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CDS GCA 90 bp | CGGCCAGCTCTCTGCACAGGCTCGGTGGGGGTGCTCAATGCTCTCTaGAGCTTGGCACCCCCTGCAGTGATCACACAGGCATCCACATTG | + |
Preference number: 5 (lower is better) Translates to: RPALCTGSVGVLNAL*SLAPPAVITQASTL Trigger: CAATGTGGATGCCTGTGTGATCACTGCAGGGGGTGCCAAGCTGCAGAGAGCATTGAGCACCCCCACCGAGCCTGTGCAGAGAGCTGGCCG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000034369.10 |
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CDS GCA 90 bp | TCCATCTCGGAACACAAGCCCCGCGATGGTAGTCCCGGTCTTGCGTaGATGAGGAACCCGAAGTCCCGGAAGGACGTGTTCCAAGGACGC | + |
Preference number: 5 (lower is better) Translates to: SISEHKPRDGSPGLA*MRNPKSRKDVFQGR Trigger: GCGTCCTTGGAACACGTCCTTCCGGGACTTCGGGTTCCTCATGCACGCAAGACCGGGACTACCATCGCGGGGCTTGTGTTCCGAGATGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034369.10 |
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CDS GCA 90 bp | ACAGGCATCCACATTGCCCCCAGAGCCCAGGTCACTCAGGATCCCTaGTGTGATGGCTTCCACCAACAGCTCTTGCGCAGCCTCCAGCGT | + |
Preference number: 5 (lower is better) Translates to: TGIHIAPRAQVTQDP*CDGFHQQLLRSLQR Trigger: ACGCTGGAGGCTGCGCAAGAGCTGTTGGTGGAAGCCATCACAGCAGGGATCCTGAGTGACCTGGGCTCTGGGGGCAATGTGGATGCCTGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034369.10 |
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CDS TCA 90 bp | TCTCGGAACACAAGCCCCGCGATGGTAGTCCCGGTCTTGCGTGCATaGGGAACCCGAAGTCCCGGAAGGACGTGTTCCAAGGACGCATTC | + |
Preference number: 5 (lower is better) Translates to: SRNTSPAMVVPVLRA*GTRSPGRTCSKDAF Trigger: GAATGCGTCCTTGGAACACGTCCTTCCGGGACTTCGGGTTCCTCATGCACGCAAGACCGGGACTACCATCGCGGGGCTTGTGTTCCGAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034369.10 |
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CDS CCA 90 bp | GAAGTTCCAGGGTCAGGGGTCTCACTTCCCGGGTCAGGACAGGTGTaGTTCCAGGAGCAAATCGGTAACGGCCAGCTCTCTGCACAGGCT | + |
Preference number: 5 (lower is better) Translates to: EVPGSGVSLPGSGQV*FQEQIGNGQLSAQA Trigger: AGCCTGTGCAGAGAGCTGGCCGTTACCGATTTGCTCCTGGAACCACACCTGTCCTGACCCGGGAAGTGAGACCCCTGACCCTGGAACTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034369.10 |
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CDS CCA 90 bp | GGAACCCGAAGTCCCGGAAGGACGTGTTCCAAGGACGCATTCCTCTaGCAGTTCTCGAAAGAGAAGCCTCCTGTGGGTTCCACTGCCTGC | + |
Preference number: 5 (lower is better) Translates to: GTRSPGRTCSKDAFL*QFSKEKPPVGSTAC Trigger: GCAGGCAGTGGAACCCACAGGAGGCTTCTCTTTCGAGAACTGCCAGAGGAATGCGTCCTTGGAACACGTCCTTCCGGGACTTCGGGTTCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034369.10 |
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CDS CCA 90 bp | ACCAGAGCCAAGGGCAGTAAAGGGCAGACGGCTGTAGGAACCATGTaGGTGCACCTCGTAGAGCTGAGGTCCGTTCAAATCAACCCCGCC | + |
Preference number: 5 (lower is better) Translates to: TRAKGSKGQTAVGTM*VHLVELRSVQINPA Trigger: GGCGGGGTTGATTTGAACGGACCTCAGCTCTACGAGGTGCACCCACATGGTTCCTACAGCCGTCTGCCCTTTACTGCCCTTGGCTCTGGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034369.10 |
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CDS CCA 72 bp | GATGCCCCCACGTGGCCTTGGTACCGGAAAAGCGTCTaGCGCAGGATACGGGTGACCGTGGCCACCCGAGGC | + |
Preference number: 6 (lower is better) Translates to: DAPTWPWYRKSV*RRIRVTVATRG Trigger: GCCTCGGGTGGCCACGGTCACCCGTATCCTGCGCCAGACGCTTTTCCGGTACCAAGGCCACGTGGGGGCATC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034369.10 |
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CDS TCA 72 bp | CTTGGTACCGGAAAAGCGTCTGGCGCAGGATACGGGTaGCCGTGGCCACCCGAGGCTCACGGCCGGTGGACA | + |
Preference number: 6 (lower is better) Translates to: LGTGKASGAGYG*PWPPEAHGRWT Trigger: TGTCCACCGGCCGTGAGCCTCGGGTGGCCACGGTCACCCGTATCCTGCGCCAGACGCTTTTCCGGTACCAAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034369.10 |
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CDS GCA 72 bp | GCCAGCTCTCTGCACAGGCTCGGTGGGGGTGCTCAATaGTCTCTGCAGCTTGGCACCCCCTGCAGTGATCAC | + |
Preference number: 6 (lower is better) Translates to: ASSLHRLGGGAQ*SLQLGTPCSDH Trigger: GTGATCACTGCAGGGGGTGCCAAGCTGCAGAGAGCATTGAGCACCCCCACCGAGCCTGTGCAGAGAGCTGGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000034369.10 |
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CDS GCA 72 bp | CTCTGCACAGGCTCGGTGGGGGTGCTCAATGCTCTCTaGAGCTTGGCACCCCCTGCAGTGATCACACAGGCA | + |
Preference number: 6 (lower is better) Translates to: LCTGSVGVLNAL*SLAPPAVITQA Trigger: TGCCTGTGTGATCACTGCAGGGGGTGCCAAGCTGCAGAGAGCATTGAGCACCCCCACCGAGCCTGTGCAGAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000034369.10 |
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CDS CCA 72 bp | CAAATCGGTAACGGCCAGCTCTCTGCACAGGCTCGGTaGGGGTGCTCAATGCTCTCTGCAGCTTGGCACCCC | + |
Preference number: 6 (lower is better) Translates to: QIGNGQLSAQAR*GCSMLSAAWHP Trigger: GGGGTGCCAAGCTGCAGAGAGCATTGAGCACCCCCACCGAGCCTGTGCAGAGAGCTGGCCGTTACCGATTTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034369.10 |
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CDS CAA 90 bp | CTCTGCAGCTTGGCACCCCCTGCAGTGATCACACAGGCATCCACATaGCCCCCAGAGCCCAGGTCACTCAGGATCCCTGCTGTGATGGCT | + |
Preference number: 6 (lower is better) Translates to: LCSLAPPAVITQAST*PPEPRSLRIPAVMA Trigger: AGCCATCACAGCAGGGATCCTGAGTGACCTGGGCTCTGGGGGCAATGTGGATGCCTGTGTGATCACTGCAGGGGGTGCCAAGCTGCAGAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000034369.10 |
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CDS TCA 72 bp | ACAAGCCCCGCGATGGTAGTCCCGGTCTTGCGTGCATaGGGAACCCGAAGTCCCGGAAGGACGTGTTCCAAG | + |
Preference number: 6 (lower is better) Translates to: TSPAMVVPVLRA*GTRSPGRTCSK Trigger: CTTGGAACACGTCCTTCCGGGACTTCGGGTTCCTCATGCACGCAAGACCGGGACTACCATCGCGGGGCTTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034369.10 |
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CDS GCA 72 bp | GAACACAAGCCCCGCGATGGTAGTCCCGGTCTTGCGTaGATGAGGAACCCGAAGTCCCGGAAGGACGTGTTC | + |
Preference number: 6 (lower is better) Translates to: EHKPRDGSPGLA*MRNPKSRKDVF Trigger: GAACACGTCCTTCCGGGACTTCGGGTTCCTCATGCACGCAAGACCGGGACTACCATCGCGGGGCTTGTGTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034369.10 |
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CDS GCA 72 bp | CACATTGCCCCCAGAGCCCAGGTCACTCAGGATCCCTaGTGTGATGGCTTCCACCAACAGCTCTTGCGCAGC | + |
Preference number: 6 (lower is better) Translates to: HIAPRAQVTQDP*CDGFHQQLLRS Trigger: GCTGCGCAAGAGCTGTTGGTGGAAGCCATCACAGCAGGGATCCTGAGTGACCTGGGCTCTGGGGGCAATGTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034369.10 |
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CDS CCA 72 bp | AACAGCTCTTGCGCAGCCTCCAGCGTCATGTTTGGCTaGAACCGGTCTTCCAACAGTGCCACGGCTGCACCC | + |
Preference number: 6 (lower is better) Translates to: NSSCAASSVMFG*NRSSNSATAAP Trigger: GGGTGCAGCCGTGGCACTGTTGGAAGACCGGTTCCAGCCAAACATGACGCTGGAGGCTGCGCAAGAGCTGTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034369.10 |
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CDS CAA 72 bp | CCACCAACAGCTCTTGCGCAGCCTCCAGCGTCATGTTaGGCTGGAACCGGTCTTCCAACAGTGCCACGGCTG | + |
Preference number: 6 (lower is better) Translates to: PPTALAQPPASC*AGTGLPTVPRL Trigger: CAGCCGTGGCACTGTTGGAAGACCGGTTCCAGCCAAACATGACGCTGGAGGCTGCGCAAGAGCTGTTGGTGG 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034369.10 |
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CDS GCA 72 bp | AGGATCCCTGCTGTGATGGCTTCCACCAACAGCTCTTaGGCAGCCTCCAGCGTCATGTTTGGCTGGAACCGG | + |
Preference number: 6 (lower is better) Translates to: RIPAVMASTNSS*AASSVMFGWNR Trigger: CCGGTTCCAGCCAAACATGACGCTGGAGGCTGCGCAAGAGCTGTTGGTGGAAGCCATCACAGCAGGGATCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034369.10 |
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CDS CAA 72 bp | CAGGATCCCTGCTGTGATGGCTTCCACCAACAGCTCTaGCGCAGCCTCCAGCGTCATGTTTGGCTGGAACCG | + |
Preference number: 6 (lower is better) Translates to: QDPCCDGFHQQL*RSLQRHVWLEP Trigger: CGGTTCCAGCCAAACATGACGCTGGAGGCTGCGCAAGAGCTGTTGGTGGAAGCCATCACAGCAGGGATCCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034369.10 |
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CDS CCA 72 bp | AGTCCCGGAAGGACGTGTTCCAAGGACGCATTCCTCTaGCAGTTCTCGAAAGAGAAGCCTCCTGTGGGTTCC | + |
Preference number: 6 (lower is better) Translates to: SPGRTCSKDAFL*QFSKEKPPVGS Trigger: GGAACCCACAGGAGGCTTCTCTTTCGAGAACTGCCAGAGGAATGCGTCCTTGGAACACGTCCTTCCGGGACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034369.10 |
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CDS CCA 72 bp | AAGGGCAGTAAAGGGCAGACGGCTGTAGGAACCATGTaGGTGCACCTCGTAGAGCTGAGGTCCGTTCAAATC | + |
Preference number: 6 (lower is better) Translates to: KGSKGQTAVGTM*VHLVELRSVQI Trigger: GATTTGAACGGACCTCAGCTCTACGAGGTGCACCCACATGGTTCCTACAGCCGTCTGCCCTTTACTGCCCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034369.10 |
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CDS CAA 72 bp | ATTTTAGGGGCGATGAAGTGGATCTTCTCGCAGCTTTaGTCCGCCACAACCGAATCGTTAGTGGCCCGCGTG | + |
Preference number: 6 (lower is better) Translates to: ILGAMKWIFSQL*SATTESLVARV Trigger: CACGCGGGCCACTAACGATTCGGTTGTGGCGGACAAAAGCTGCGAGAAGATCCACTTCATCGCCCCTAAAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034369.10 |