Pregenerated sensors for PSMA4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032301Ensembl transcript IDs: ENSMUST00000034848.14, ENSMUST00000171900.2, ENSMUST00000172407.8
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GACCCAATTCAGTATGTAATGTCCTATTTCCCCGATGGCCAAGGTAAGGAAGATAGGACAGCTCCTAAGTaGATTGGTGCCTCTAAGGAG | + |
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Preference number: 2 (lower is better) Translates to: DPIQYVMSYFPDGQGKEDRTAPK*IGASKE Trigger: CTCCTTAGAGGCACCAATTCACTTAGGAGCTGTCCT...ATCTTCCTTACCTTGGCCATCGGGGAAATAGGACATTACATACTGAATTGGGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| 3UTR-3UTR CCA 90 bp | ATTCAGTATGTAATGTCCTATTTCCCCGATGGCCAAGGTAAGGAAGATAATACAAAAACACTTCCGGGGTaGAAGGCCAGGACAGCTCCT | + |
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Preference number: 2 (lower is better) Translates to: IQYVMSYFPDGQGKEDNTKTLPG*KARTAP Trigger: AGGAGCTGTCCTGGCCTTCCACCCCGGAAGTGTTTT...TGTATTATCTTCCTTACCTTGGCCATCGGGGAAATAGGACATTACATACTGAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| 3UTR-3UTR CAA 90 bp | ATGTCCATCATTACAATAAAGCATCCAACTGGACAGACATGGACCCAATTCAGTCAGCTCCTAAGTGAATaGGTGCCTCTAAGGAGTTAT | + |
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Preference number: 3 (lower is better) Translates to: MSIITIKHPTGQTWTQFSQLLSE*VPLRSY Trigger: ATAACTCCTTAGAGGCACCAATTCACTTAGGAGCTG...ACTGAATTGGGTCCATGTCTGTCCAGTTGGATGCTTTATTGTAATGATGGACAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| CDS-3UTR GCA 90 bp | CCCGATGGCCAAGGTAAGGAAGATAATACAAGAAAACACTTCCGGGGTGGAAGGCCCCAAACAGGTGCCTaGATGTCCAATGGCTTCCAT | + |
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Preference number: 4 (lower is better) Translates to: PDGQGKEDNTRKHFRGGRPQTGA*MSNGFH Trigger: ATGGAAGCCATTGGACATGCAGGCACCTGTTTGGGG...CCTTCCACCCCGGAAGTGTTTTCTTGTATTATCTTCCTTACCTTGGCCATCGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| 3UTR CAA 72 bp | TTCCGGGGTGGAAGGCCAGGACAGCTCCTAAGTGAATaGGTGCCTCTAAGGAGTTATAAAATCCGTGATTCT | + |
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Preference number: 4 (lower is better) Translates to: FRGGRPGQLLSE*VPLRSYKIRDS Trigger: AGAATCACGGATTTTATAACTCCTTAGAGGCACCAATTCACTTAGGAGCTGTCCTGGCCTTCCACCCCGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| CDS-3UTR GCA 90 bp | GCCAAGGTAAGGAAGATAATACAAGAAAACACTTCCGGGGTGGAAGGCCAGGACTGTTCCACTTCCTTTTaGTTGAGGACTCTGATCACC | + |
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Preference number: 4 (lower is better) Translates to: AKVRKIIQENTSGVEGQDCSTSF*LRTLIT Trigger: GGTGATCAGAGTCCTCAAGCAAAAGGAAGTGGAACA...GTCCTGGCCTTCCACCCCGGAAGTGTTTTCTTGTATTATCTTCCTTACCTTGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| CDS-3UTR CCA 90 bp | CCCGATGGCCAAGGTAAGGAAGATAATACAAGAAAACACTTCCGGGGTGGAAGGATGGCATACTCCACTTaGTATAAGCGACCTTCTGGA | + |
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Preference number: 4 (lower is better) Translates to: PDGQGKEDNTRKHFRGGRMAYST*YKRPSG Trigger: TCCAGAAGGTCGCTTATACCAAGTGGAGTATGCCAT...CCTTCCACCCCGGAAGTGTTTTCTTGTATTATCTTCCTTACCTTGGCCATCGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| CDS-3UTR CCA 90 bp | GGCCAAGGTAAGGAAGATAATACAAGAAAACACTTCCGGGGTGGAAGGCCAGGAGTCCAATGGCTTCCATaGCATACTCCACTTGGTATA | + |
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Preference number: 4 (lower is better) Translates to: GQGKEDNTRKHFRGGRPGVQWLP*HTPLGI Trigger: TATACCAAGTGGAGTATGCCATGGAAGCCATTGGAC...TCCTGGCCTTCCACCCCGGAAGTGTTTTCTTGTATTATCTTCCTTACCTTGGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| CDS-3UTR CCA 90 bp | AAGGTAAGGAAGATAATACAAGAAAACACTTCCGGGGTGGAAGGCCAGGACAGCCCCATAGTTTCCACTTaGGTCACTCTGATAGAGCTG | + |
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Preference number: 4 (lower is better) Translates to: KVRKIIQENTSGVEGQDSPIVST*VTLIEL Trigger: CAGCTCTATCAGAGTGACCCAAGTGGAAACTATGGG...GCTGTCCTGGCCTTCCACCCCGGAAGTGTTTTCTTGTATTATCTTCCTTACCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| CDS-3UTR CCA 90 bp | AAGGTAAGGAAGATAATACAAGAAAACACTTCCGGGGTGGAAGGCCAGGACAGCTGTTCCCAATGCATGTaGCTTTCCATCCCCCATAGT | + |
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Preference number: 4 (lower is better) Translates to: KVRKIIQENTSGVEGQDSCSQCM*LSIPHS Trigger: ACTATGGGGGATGGAAAGCCACATGCATTGGGAACA...GCTGTCCTGGCCTTCCACCCCGGAAGTGTTTTCTTGTATTATCTTCCTTACCTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| CDS-3UTR TCA 90 bp | GACAGACATGGACCCAATTCAGTATGTAATGTCCTATTTCCCCGATGGCCAAGGCAGGGAATTGGCTCCTaGTACTGTAATAAGTACCGT | + |
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Preference number: 4 (lower is better) Translates to: DRHGPNSVCNVLFPRWPRQGIGS*YCNKYR Trigger: ACGGTACTTATTACAGTATCAGGAGCCAATTCCCTG...CCTTGGCCATCGGGGAAATAGGACATTACATACTGAATTGGGTCCATGTCTGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| CDS-3UTR TCA 90 bp | ATGTCCATCATTACAATAAAGCATCCAACTGGACAGACATGGACCCAATTCAGTAGCCAGAGCAAGCGCTaGCTTCAGAGTCATTTCGCC | + |
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Preference number: 4 (lower is better) Translates to: MSIITIKHPTGQTWTQFSSQSKR*LQSHFA Trigger: GGCGAAATGACTCTGAAGTCAGCGCTTGCTCTGGCT...ACTGAATTGGGTCCATGTCTGTCCAGTTGGATGCTTTATTGTAATGATGGACAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| CDS-3UTR GCA 90 bp | AATAAAGCATCCAACTGGACAGACATGGACCCAATTCAGTATGTAATGTCCTATGAAGCTTGTGGATGTTaGGCCTCTCCGCTGCAAGCA | + |
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Preference number: 4 (lower is better) Translates to: NKASNWTDMDPIQYVMSYEACGC*ASPLQA Trigger: TGCTTGCAGCGGAGAGGCGCAACATCCACAAGCTTC...ATAGGACATTACATACTGAATTGGGTCCATGTCTGTCCAGTTGGATGCTTTATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| CDS-3UTR TCA 90 bp | TCCAACTGGACAGACATGGACCCAATTCAGTATGTAATGTCCTATTTCCCCGATTGTAATAAGTACCGTTaGGCAATGAGCCTTAGCTCG | + |
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Preference number: 4 (lower is better) Translates to: SNWTDMDPIQYVMSYFPDCNKYR*AMSLSS Trigger: CGAGCTAAGGCTCATTGCTCAACGGTACTTATTACA...ATCGGGGAAATAGGACATTACATACTGAATTGGGTCCATGTCTGTCCAGTTGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| CDS-3UTR GCA 90 bp | ATGTCCTATTTCCCCGATGGCCAAGGTAAGGAAGATAATACAAGAAAACACTTCGTTGCGCCTCTCCGCTaGAAGCAAAACTCCATCATT | + |
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Preference number: 4 (lower is better) Translates to: MSYFPDGQGKEDNTRKHFVAPLR*KQNSII Trigger: AATGATGGAGTTTTGCTTGCAGCGGAGAGGCGCAAC...GAAGTGTTTTCTTGTATTATCTTCCTTACCTTGGCCATCGGGGAAATAGGACAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| CDS-3UTR GCA 90 bp | CAGTATGTAATGTCCTATTTCCCCGATGGCCAAGGTAAGGAAGATAATACAAGAAGTGCTGTAACCAACTaGTCACAGGGAATTGGCTCC | + |
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Preference number: 4 (lower is better) Translates to: QYVMSYFPDGQGKEDNTRSAVTN*SQGIGS Trigger: GGAGCCAATTCCCTGTGAGCAGTTGGTTACAGCACT...TCTTGTATTATCTTCCTTACCTTGGCCATCGGGGAAATAGGACATTACATACTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| CDS-3UTR GCA 90 bp | ATGTCCATCATTACAATAAAGCATCCAACTGGACAGACATGGACCCAATTCAGTCACCAAAGGGACGTTTaGCTCCAAACTGTGTGTACG | + |
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Preference number: 4 (lower is better) Translates to: MSIITIKHPTGQTWTQFSHQRDV*LQTVCT Trigger: CGTACACACAGTTTGGAGGCAAACGTCCCTTTGGTG...ACTGAATTGGGTCCATGTCTGTCCAGTTGGATGCTTTATTGTAATGATGGACAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| CDS-3UTR GCA 90 bp | GTAATGTCCTATTTCCCCGATGGCCAAGGTAAGGAAGATAATACAAGAAAACACCACTGTTGTTCCCAATaGATGTGGCTTTCCATCCCC | + |
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Preference number: 4 (lower is better) Translates to: VMSYFPDGQGKEDNTRKHHCCSQ*MWLSIP Trigger: GGGGATGGAAAGCCACATGCATTGGGAACAACAGTG...GTGTTTTCTTGTATTATCTTCCTTACCTTGGCCATCGGGGAAATAGGACATTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| CDS-3UTR CCA 90 bp | CAGTATGTAATGTCCTATTTCCCCGATGGCCAAGGTAAGGAAGATAATACAAGATGCCTGCATGTCCAATaGCTTCCATGGCATACTCCA | + |
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Preference number: 4 (lower is better) Translates to: QYVMSYFPDGQGKEDNTRCLHVQ*LPWHTP Trigger: TGGAGTATGCCATGGAAGCCATTGGACATGCAGGCA...TCTTGTATTATCTTCCTTACCTTGGCCATCGGGGAAATAGGACATTACATACTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| CDS-3UTR CCA 90 bp | CTGGACAGACATGGACCCAATTCAGTATGTAATGTCCTATTTCCCCGATGGCCATCTCTCTTGTTAGTGTaGCGATTTCCACTTTTTCAG | + |
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Preference number: 4 (lower is better) Translates to: LDRHGPNSVCNVLFPRWPSLLLV*RFPLFQ Trigger: CTGAAAAAGTGGAAATCGCCACACTAACAAGAGAGA...TGGCCATCGGGGAAATAGGACATTACATACTGAATTGGGTCCATGTCTGTCCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| CDS-3UTR TCA 90 bp | ATGTCCATCATTACAATAAAGCATCCAACTGGACAGACATGGACCCAATTCAGTGTCTTGTTTCAACATTaGCACAGCCGCAGCACTGTT | + |
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Preference number: 4 (lower is better) Translates to: MSIITIKHPTGQTWTQFSVLFQH*HSRSTV Trigger: AACAGTGCTGCGGCTGTGTCAATGTTGAAACAAGAC...ACTGAATTGGGTCCATGTCTGTCCAGTTGGATGCTTTATTGTAATGATGGACAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| CDS-3UTR GCA 90 bp | AAGATGTCCATCATTACAATAAAGCATCCAACTGGACAGACATGGACCCAATTCAAATCCCCAAACAGGTaGCTGCATGTCCAATGGCTT | + |
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Preference number: 4 (lower is better) Translates to: KMSIITIKHPTGQTWTQFKSPNR*LHVQWL Trigger: AAGCCATTGGACATGCAGGCACCTGTTTGGGGATTT...GAATTGGGTCCATGTCTGTCCAGTTGGATGCTTTATTGTAATGATGGACATCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| CDS-3UTR CCA 90 bp | TCCAACTGGACAGACATGGACCCAATTCAGTATGTAATGTCCTATTTCCCCGATAAAATATTGTGGTCCTaGAGTCATATCTTCGAGACA | + |
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Preference number: 4 (lower is better) Translates to: SNWTDMDPIQYVMSYFPDKILWS*SHIFET Trigger: TGTCTCGAAGATATGACTCCAGGACCACAATATTTT...ATCGGGGAAATAGGACATTACATACTGAATTGGGTCCATGTCTGTCCAGTTGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| CDS-3UTR TCA 90 bp | AATAAAGCATCCAACTGGACAGACATGGACCCAATTCAGTATGTAATGTCCTATTTCCACTTTTTCAGCTaGCAGTTTACTAACATCCAT | + |
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Preference number: 4 (lower is better) Translates to: NKASNWTDMDPIQYVMSYFHFFS*QFTNIH Trigger: ATGGATGTTAGTAAACTGTCAGCTGAAAAAGTGGAA...ATAGGACATTACATACTGAATTGGGTCCATGTCTGTCCAGTTGGATGCTTTATT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| CDS CCA 90 bp | CTCCATCATTGGCTAAAATCCCCAAACAGGTGCCTGCATGTCCAATaGCTTCCATGGCATACTCCACTTGGTATAAGCGACCTTCTGGAG | + |
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Preference number: 5 (lower is better) Translates to: LHHWLKSPNRCLHVQ*LPWHTPLGISDLLE Trigger: CTCCAGAAGGTCGCTTATACCAAGTGGAGTATGCCATGGAAGCCATTGGACATGCAGGCACCTGTTTGGGGATTTTAGCCAATGATGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000034848.14 ENSMUST00000171900.2 ENSMUST00000172407.8 |
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| CDS CCA 90 bp | GTTGTTCCCAATGCATGTGGCTTTCCATCCCCCATAGTTTCCACTTaGGTCACTCTGATAGAGCTGAAAGCCATAGTGCTTATCCCAGCC | + |
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Preference number: 5 (lower is better) Translates to: VVPNACGFPSPIVST*VTLIELKAIVLIPA Trigger: GGCTGGGATAAGCACTATGGCTTTCAGCTCTATCAGAGTGACCCAAGTGGAAACTATGGGGGATGGAAAGCCACATGCATTGGGAACAAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034848.14 ENSMUST00000172407.8 |
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| CDS-3UTR CAA 90 bp | GACCCAATTCAGTATGTAATGTCCTATTTCCCCGATGGCCAAGGTAAGGAAGATAGAAGCTTGTGGATGTaGCGCCTCTCCGCTGCAAGC | + |
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Preference number: 5 (lower is better) Translates to: DPIQYVMSYFPDGQGKEDRSLWM*RLSAAS Trigger: GCTTGCAGCGGAGAGGCGCAACATCCACAAGCTTCT...ATCTTCCTTACCTTGGCCATCGGGGAAATAGGACATTACATACTGAATTGGGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| CDS CCA 90 bp | GTTTCAACATTGACACAGCCGCAGCACTGTTGTTCCCAATGCATGTaGCTTTCCATCCCCCATAGTTTCCACTTGGGTCACTCTGATAGA | + |
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Preference number: 5 (lower is better) Translates to: VSTLTQPQHCCSQCM*LSIPHSFHLGHSDR Trigger: TCTATCAGAGTGACCCAAGTGGAAACTATGGGGGATGGAAAGCCACATGCATTGGGAACAACAGTGCTGCGGCTGTGTCAATGTTGAAAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034848.14 ENSMUST00000172407.8 |
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| CDS-3UTR CAA 90 bp | CCCGATGGCCAAGGTAAGGAAGATAATACAAGAAAACACTTCCGGGGTGGAAGGTGTGTGTACGCCTGTTaGATATCACACAGTGCTGTA | + |
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Preference number: 5 (lower is better) Translates to: PDGQGKEDNTRKHFRGGRCVYAC*ISHSAV Trigger: TACAGCACTGTGTGATATCAAACAGGCGTACACACA...CCTTCCACCCCGGAAGTGTTTTCTTGTATTATCTTCCTTACCTTGGCCATCGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| CDS-3UTR CAA 90 bp | CAAGGTAAGGAAGATAATACAAGAAAACACTTCCGGGGTGGAAGGCCAGGACAGAGTCTTGTTTCAACATaGACACAGCCGCAGCACTGT | + |
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Preference number: 5 (lower is better) Translates to: QGKEDNTRKHFRGGRPGQSLVST*TQPQHC Trigger: ACAGTGCTGCGGCTGTGTCAATGTTGAAACAAGACT...CTGTCCTGGCCTTCCACCCCGGAAGTGTTTTCTTGTATTATCTTCCTTACCTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| CDS-3UTR CAA 90 bp | CTGGACAGACATGGACCCAATTCAGTATGTAATGTCCTATTTCCCCGATGGCCACTTCTGGAGAAAATATaGTGGTCCTGGAGTCATATC | + |
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Preference number: 5 (lower is better) Translates to: LDRHGPNSVCNVLFPRWPLLEKI*WSWSHI Trigger: GATATGACTCCAGGACCACAATATTTTCTCCAGAAG...TGGCCATCGGGGAAATAGGACATTACATACTGAATTGGGTCCATGTCTGTCCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| CDS-3UTR CAA 90 bp | ATGTCCTATTTCCCCGATGGCCAAGGTAAGGAAGATAATACAAGAAAACACTTCACTTCATCAAGAAGCTaGTGGATGTTGCGCCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: MSYFPDGQGKEDNTRKHFTSSRS*WMLRLS Trigger: GGAGAGGCGCAACATCCACAAGCTTCTTGATGAAGT...GAAGTGTTTTCTTGTATTATCTTCCTTACCTTGGCCATCGGGGAAATAGGACAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| CDS-3UTR CAA 90 bp | GACCCAATTCAGTATGTAATGTCCTATTTCCCCGATGGCCAAGGTAAGGAAGATACTGCTCACAGGGAATaGGCTCCTGATACTGTAATA | + |
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Preference number: 5 (lower is better) Translates to: DPIQYVMSYFPDGQGKEDTAHRE*APDTVI Trigger: TATTACAGTATCAGGAGCCAATTCCCTGTGAGCAGT...ATCTTCCTTACCTTGGCCATCGGGGAAATAGGACATTACATACTGAATTGGGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| CDS-3UTR CAA 90 bp | AAGATGTCCATCATTACAATAAAGCATCCAACTGGACAGACATGGACCCAATTCCCCCATAGTTTCCACTaGGGTCACTCTGATAGAGCT | + |
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Preference number: 5 (lower is better) Translates to: KMSIITIKHPTGQTWTQFPHSFH*GHSDRA Trigger: AGCTCTATCAGAGTGACCCAAGTGGAAACTATGGGG...GAATTGGGTCCATGTCTGTCCAGTTGGATGCTTTATTGTAATGATGGACATCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| CDS-3UTR CAA 90 bp | ATGTCCTATTTCCCCGATGGCCAAGGTAAGGAAGATAATACAAGAAAACACTTCTCCACTTCCTTTTGCTaGAGGACTCTGATCACCGTC | + |
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Preference number: 5 (lower is better) Translates to: MSYFPDGQGKEDNTRKHFSTSFC*RTLITV Trigger: GACGGTGATCAGAGTCCTCAAGCAAAAGGAAGTGGA...GAAGTGTTTTCTTGTATTATCTTCCTTACCTTGGCCATCGGGGAAATAGGACAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| CDS-3UTR CAA 90 bp | TCCAACTGGACAGACATGGACCCAATTCAGTATGTAATGTCCTATTTCCCCGATTCCTCTTCATGTTTTTaGATCAACTGTTCCACTTCC | + |
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Preference number: 5 (lower is better) Translates to: SNWTDMDPIQYVMSYFPDSSSCF*INCSTS Trigger: GGAAGTGGAACAGTTGATCAAAAAACATGAAGAGGA...ATCGGGGAAATAGGACATTACATACTGAATTGGGTCCATGTCTGTCCAGTTGGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| CDS CCA 72 bp | TGGCTAAAATCCCCAAACAGGTGCCTGCATGTCCAATaGCTTCCATGGCATACTCCACTTGGTATAAGCGAC | + |
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Preference number: 6 (lower is better) Translates to: WLKSPNRCLHVQ*LPWHTPLGISD Trigger: GTCGCTTATACCAAGTGGAGTATGCCATGGAAGCCATTGGACATGCAGGCACCTGTTTGGGGATTTTAGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000034848.14 ENSMUST00000171900.2 ENSMUST00000172407.8 |
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| CDS CAA 90 bp | TGTTGTTCCCAATGCATGTGGCTTTCCATCCCCCATAGTTTCCACTaGGGTCACTCTGATAGAGCTGAAAGCCATAGTGCTTATCCCAGC | + |
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Preference number: 6 (lower is better) Translates to: CCSQCMWLSIPHSFH*GHSDRAESHSAYPS Trigger: GCTGGGATAAGCACTATGGCTTTCAGCTCTATCAGAGTGACCCAAGTGGAAACTATGGGGGATGGAAAGCCACATGCATTGGGAACAACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034848.14 ENSMUST00000172407.8 |
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| CDS CAA 90 bp | CTGACTTCAGAGTCATTTCGCCTTCTTTGTAGTCTTGTTTCAACATaGACACAGCCGCAGCACTGTTGTTCCCAATGCATGTGGCTTTCC | + |
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Preference number: 6 (lower is better) Translates to: LTSESFRLLCSLVST*TQPQHCCSQCMWLS Trigger: GGAAAGCCACATGCATTGGGAACAACAGTGCTGCGGCTGTGTCAATGTTGAAACAAGACTACAAAGAAGGCGAAATGACTCTGAAGTCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034848.14 ENSMUST00000172407.8 |
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| CDS CCA 72 bp | CCTGCATGTCCAATGGCTTCCATGGCATACTCCACTTaGTATAAGCGACCTTCTGGAGAAAATATTGTGGTC | + |
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Preference number: 6 (lower is better) Translates to: PACPMASMAYST*YKRPSGENIVV Trigger: GACCACAATATTTTCTCCAGAAGGTCGCTTATACCAAGTGGAGTATGCCATGGAAGCCATTGGACATGCAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000034848.14 ENSMUST00000171900.2 ENSMUST00000172407.8 |
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| CDS CCA 72 bp | AATGCATGTGGCTTTCCATCCCCCATAGTTTCCACTTaGGTCACTCTGATAGAGCTGAAAGCCATAGTGCTT | + |
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Preference number: 6 (lower is better) Translates to: NACGFPSPIVST*VTLIELKAIVL Trigger: AAGCACTATGGCTTTCAGCTCTATCAGAGTGACCCAAGTGGAAACTATGGGGGATGGAAAGCCACATGCATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034848.14 ENSMUST00000172407.8 |
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| CDS CAA 90 bp | TCTTTCTTCTCCCGCTCAGCCTTAGCTTCTTCCTCTTCATGTTTTTaGATCAACTGTTCCACTTCCTTTTGCTTGAGGACTCTGATCACC | + |
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Preference number: 6 (lower is better) Translates to: SFFSRSALASSSSCF*INCSTSFCLRTLIT Trigger: GGTGATCAGAGTCCTCAAGCAAAAGGAAGTGGAACAGTTGATCAAAAAACATGAAGAGGAAGAAGCTAAGGCTGAGCGGGAGAAGAAAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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| CDS CAA 72 bp | TCCCGCTCAGCCTTAGCTTCTTCCTCTTCATGTTTTTaGATCAACTGTTCCACTTCCTTTTGCTTGAGGACT | + |
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Preference number: 6 (lower is better) Translates to: SRSALASSSSCF*INCSTSFCLRT Trigger: AGTCCTCAAGCAAAAGGAAGTGGAACAGTTGATCAAAAAACATGAAGAGGAAGAAGCTAAGGCTGAGCGGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034848.14 |
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