Pregenerated sensors for PSMA3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000060073Ensembl transcript IDs: ENSMUST00000071704.4, ENSMUST00000160027.8, ENSMUST00000160864.8, ENSMUST00000162626.8, ENSMUST00000162851.8, ENSMUST00000162898.2
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCTGAGCAAGCCAGGGGAAGCGAGCCAGTAAAGAACATCCCTCCATaGCCTCTGCATCAGTTCCTGCTTTCTGACCTGTTTGAGTTCCAG | + |
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Preference number: 1 (lower is better) Translates to: AEQARGSEPVKNIPP*PLHQFLLSDLFEFQ Trigger: CTGGAACTCAAACAGGTCAGAAAGCAGGAACTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGGCTCGCTTCCCCTGGCTTGCTCAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160027.8 |
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| 3UTR CCA 90 bp | CCATTGAGACCCAACTGTAAAGCATTTTCTCAATTAGTGATCAAGTaGGGAGGGTCCCTTGTGGGCGGTGCCACCCCTGGACTAGTAGTC | + |
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Preference number: 1 (lower is better) Translates to: PLRPNCKAFSQLVIK*GGSLVGGATPGLVV Trigger: GACTACTAGTCCAGGGGTGGCACCGCCCACAAGGGACCCTCCCCACTTGATCACTAATTGAGAAAATGCTTTACAGTTGGGTCTCAATGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160027.8 |
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| 3UTR GCA 90 bp | AGCCTGGAACTGGAGTTACAGACAGGTGTGAGCTGCCATTGTAGGTaGTGGGAATTGAACCTATGTCCCCTGGAAGAGCAGCTCTTAACT | + |
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Preference number: 1 (lower is better) Translates to: SLELELQTGVSCHCR*WELNLCPLEEQLLT Trigger: AGTTAAGAGCTGCTCTTCCAGGGGACATAGGTTCAATTCCCAGCACCTACAATGGCAGCTCACACCTGTCTGTAACTCCAGTTCCAGGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000160027.8 ENSMUST00000162626.8 |
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| 3UTR GCA 90 bp | CTTGGTGTATACACACACACACACACACACACACACACACAAATTTaGCACCTGTCTACAAAGGAAATTGTTTCAGAGATACTAATAATC | + |
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Preference number: 1 (lower is better) Translates to: LGVYTHTHTHTHTQI*HLSTKEIVSEILII Trigger: GATTATTAGTATCTCTGAAACAATTTCCTTTGTAGACAGGTGGCAAATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATACACCAAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160027.8 |
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| 3UTR CAA 90 bp | CTGGAGTTATCACAGAGGAGGAGCTTAGTTAGGGAAGGGCCTCCATaGAGACCCAACTGTAAAGCATTTTCTCAATTAGTGATCAAGTGG | + |
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Preference number: 2 (lower is better) Translates to: LELSQRRSLVREGPP*RPNCKAFSQLVIKW Trigger: CCACTTGATCACTAATTGAGAAAATGCTTTACAGTTGGGTCTCAATGGAGGCCCTTCCCTAACTAAGCTCCTCCTCTGTGATAACTCCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160027.8 |
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| 3UTR-3UTR GCA 90 bp | ACACACACACACACACACAAATTTGCCACCTGTCTACAAAGGAAATTGTTTCAGCAGACAGGTGTGAGCTaGCATTGTAGGTGCTGGGAA | + |
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Preference number: 2 (lower is better) Translates to: THTHTHKFATCLQRKLFQQTGVS*HCRCWE Trigger: TTCCCAGCACCTACAATGGCAGCTCACACCTGTCTG...CTGAAACAATTTCCTTTGTAGACAGGTGGCAAATTTGTGTGTGTGTGTGTGTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160027.8 |
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| 3UTR-3UTR GCA 90 bp | ACACACACACACACACACAAATTTGCCACCTGTCTACAAAGGAAATTGTTTCAGAGGACATGTTGCTCTTaGACAAGACCTGGGTTCAGT | + |
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Preference number: 2 (lower is better) Translates to: THTHTHKFATCLQRKLFQRTCCS*TRPGFS Trigger: ACTGAACCCAGGTCTTGTGCAAGAGCAACATGTCCT...CTGAAACAATTTCCTTTGTAGACAGGTGGCAAATTTGTGTGTGTGTGTGTGTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160027.8 |
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| 3UTR-3UTR CCA 90 bp | ACACACACACACACACACAAATTTGCCACCTGTCTACAAAGGAAATTGTTTCAGTGCCATTGTAGGTGCTaGGAATTGAACCTATGTCCC | + |
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Preference number: 2 (lower is better) Translates to: THTHTHKFATCLQRKLFQCHCRC*ELNLCP Trigger: GGGACATAGGTTCAATTCCCAGCACCTACAATGGCA...CTGAAACAATTTCCTTTGTAGACAGGTGGCAAATTTGTGTGTGTGTGTGTGTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160027.8 |
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| 3UTR CAA 90 bp | ACTTGGTGTATACACACACACACACACACACACACACACACAAATTaGCCACCTGTCTACAAAGGAAATTGTTTCAGAGATACTAATAAT | + |
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Preference number: 2 (lower is better) Translates to: TWCIHTHTHTHTHTN*PPVYKGNCFRDTNN Trigger: ATTATTAGTATCTCTGAAACAATTTCCTTTGTAGACAGGTGGCAAATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATACACCAAGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160027.8 |
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| 3UTR CCA 72 bp | CAAGTGGGGAGGGTCCCTTGTGGGCGGTGCCACCCCTaGACTAGTAGTCCTGGGTTCTGTAAGAAAGTAAGC | + |
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Preference number: 3 (lower is better) Translates to: QVGRVPCGRCHP*TSSPGFCKKVS Trigger: GCTTACTTTCTTACAGAACCCAGGACTACTAGTCCAGGGGTGGCACCGCCCACAAGGGACCCTCCCCACTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160027.8 |
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| 3UTR GCA 72 bp | ATTAGTGATCAAGTGGGGAGGGTCCCTTGTGGGCGGTaGCACCCCTGGACTAGTAGTCCTGGGTTCTGTAAG | + |
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Preference number: 3 (lower is better) Translates to: ISDQVGRVPCGR*HPWTSSPGFCK Trigger: CTTACAGAACCCAGGACTACTAGTCCAGGGGTGGCACCGCCCACAAGGGACCCTCCCCACTTGATCACTAAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160027.8 |
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| 3UTR CCA 72 bp | CCCAACTGTAAAGCATTTTCTCAATTAGTGATCAAGTaGGGAGGGTCCCTTGTGGGCGGTGCCACCCCTGGA | + |
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Preference number: 3 (lower is better) Translates to: PNCKAFSQLVIK*GGSLVGGATPG Trigger: TCCAGGGGTGGCACCGCCCACAAGGGACCCTCCCCACTTGATCACTAATTGAGAAAATGCTTTACAGTTGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160027.8 |
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| 3UTR TCA 72 bp | TGGACTAGTAGTCCTGGGTTCTGTAAGAAAGTAAGCTaGGCAAGCCAGGGGAAGCGAGCCAGTAAAGAACAT | + |
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Preference number: 3 (lower is better) Translates to: WTSSPGFCKKVS*ASQGKRASKEH Trigger: ATGTTCTTTACTGGCTCGCTTCCCCTGGCTTGCTCAGCTTACTTTCTTACAGAACCCAGGACTACTAGTCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160027.8 |
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| 3UTR TCA 72 bp | CCTTTGGTGATGAACAGCAGAATGGAAAGTGTAAGCTaGATAAACCCTTTCCTCCCCAGCTTGCTTCTTGGT | + |
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Preference number: 3 (lower is better) Translates to: PLVMNSRMESVS*INPFLPSLLLG Trigger: ACCAAGAAGCAAGCTGGGGAGGAAAGGGTTTATTCAGCTTACACTTTCCATTCTGCTGTTCATCACCAAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160027.8 |
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| 3UTR TCA 72 bp | CAGTTCCTGCTTTCTGACCTGTTTGAGTTCCAGTCCTaGCTTCCTTTGGTGATGAACAGCAGAATGGAAAGT | + |
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Preference number: 3 (lower is better) Translates to: QFLLSDLFEFQS*LPLVMNSRMES Trigger: ACTTTCCATTCTGCTGTTCATCACCAAAGGAAGTCAGGACTGGAACTCAAACAGGTCAGAAAGCAGGAACTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160027.8 |
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| 3UTR-3UTR CAA 90 bp | GCTTATGTAGGAAGACCTACCCTGCCTCAAATAAACCAAAAGTACCAGAAACAACCTTTCCTCCCCAGCTaGCTTCTTGGTCATGATGAT | + |
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Preference number: 3 (lower is better) Translates to: AYVGRPTLPQINQKYQKQPFLPS*LLGHDD Trigger: ATCATCATGACCAAGAAGCAAGCTGGGGAGGAAAGG...TTGTTTCTGGTACTTTTGGTTTATTTGAGGCAGGGTAGGTCTTCCTACATAAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160027.8 |
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| 3UTR TCA 72 bp | TCTTGCACAAGACCTGGGTTCAGTTCCGAGCACCCATaGTTCACAGCCATCCATAACTTTAGTTCTAGATTA | + |
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Preference number: 3 (lower is better) Translates to: SCTRPGFSSEHP*FTAIHNFSSRL Trigger: TAATCTAGAACTAAAGTTATGGATGGCTGTGAATCATGGGTGCTCGGAACTGAACCCAGGTCTTGTGCAAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160027.8 |
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| 3UTR GCA 72 bp | TACACACACACACACACACACACACACACACAAATTTaGCACCTGTCTACAAAGGAAATTGTTTCAGAGATA | + |
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Preference number: 3 (lower is better) Translates to: YTHTHTHTHTQI*HLSTKEIVSEI Trigger: TATCTCTGAAACAATTTCCTTTGTAGACAGGTGGCAAATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160027.8 |
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| CDS-3UTR TCA 90 bp | CACCTGCCTCTGAGTACTAGGATTAAAGGCATGTACTACCACACGAGAATAGCAAGAGAACGTAGAGGCTaGCAAGTCATACCCAGTGCC | + |
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Preference number: 4 (lower is better) Translates to: HLPLSTRIKGMYYHTRIARERRG*QVIPSA Trigger: GGCACTGGGTATGACTTGTCAGCCTCTACGTTCTCT...TGCTATTCTCGTGTGGTAGTACATGCCTTTAATCCTAGTACTCAGAGGCAGGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000160027.8 ENSMUST00000162626.8 |
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| CDS-3UTR TCA 90 bp | ATGGTGCTAGCCATATGCAACTGTTACAGAAATGTAAACCAGCGGATGGGGAAGAGAGAACGTAGAGGCTaGCAAGTCATACCCAGTGCC | + |
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Preference number: 4 (lower is better) Translates to: MVLAICNCYRNVNQRMGKRERRG*QVIPSA Trigger: GGCACTGGGTATGACTTGTCAGCCTCTACGTTCTCT...CTTCCCCATCCGCTGGTTTACATTTCTGTAACAGTTGCATATGGCTAGCACCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071704.4 ENSMUST00000160027.8 ENSMUST00000162626.8 ENSMUST00000162851.8 |
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| CDS-3UTR TCA 90 bp | AAGAACATCCCTCCATGGCCTCTGCATCAGTTCCTGCTTTCTGACCTGTTTGAGTGTAAGACCCCAACATaGAACTGCAGCCAAAAGGTC | + |
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Preference number: 4 (lower is better) Translates to: KNIPPWPLHQFLLSDLFECKTPT*NCSQKV Trigger: GACCTTTTGGCTGCAGTTTCATGTTGGGGTCTTACA...CTCAAACAGGTCAGAAAGCAGGAACTGATGCAGAGGCCATGGAGGGATGTTCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160027.8 |
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| CDS-3UTR CCA 90 bp | GTGCTAGCCATATGCAACTGTTACAGAAATGTAAACCAGCGGATGGGGAAGAAATCTTTGCAGCCTGCCTaGCTTTGCCAATCGCACAGC | + |
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Preference number: 4 (lower is better) Translates to: VLAICNCYRNVNQRMGKKSLQPA*LCQSHS Trigger: GCTGTGCGATTGGCAAAGCCAGGCAGGCTGCAAAGA...TTTCTTCCCCATCCGCTGGTTTACATTTCTGTAACAGTTGCATATGGCTAGCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000160027.8 ENSMUST00000160864.8 ENSMUST00000162851.8 ENSMUST00000162898.2 |
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| CDS-3UTR TCA 90 bp | GTGCTAGCCATATGCAACTGTTACAGAAATGTAAACCAGCGGATGGGGAAGAAAAGAGAACGTAGAGGCTaGCAAGTCATACCCAGTGCC | + |
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Preference number: 4 (lower is better) Translates to: VLAICNCYRNVNQRMGKKRERRG*QVIPSA Trigger: GGCACTGGGTATGACTTGTCAGCCTCTACGTTCTCT...TTTCTTCCCCATCCGCTGGTTTACATTTCTGTAACAGTTGCATATGGCTAGCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000071704.4 ENSMUST00000160027.8 ENSMUST00000162626.8 ENSMUST00000162851.8 |
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| CDS-3UTR TCA 90 bp | CATTGTAGGTGCTGGGAATTGAACCTATGTCCCCTGGAAGAGCAGCTCTTAACTATTCACCAACCCAGCTaGGCTCCAGTTCAAAAGCTT | + |
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Preference number: 4 (lower is better) Translates to: HCRCWELNLCPLEEQLLTIHQPS*APVQKL Trigger: AAGCTTTTGAACTGGAGCTCAGCTGGGTTGGTGAAT...AGTTAAGAGCTGCTCTTCCAGGGGACATAGGTTCAATTCCCAGCACCTACAATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160027.8 |
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| CDS-3UTR CCA 90 bp | GCTAGCCATATGCAACTGTTACAGAAATGTAAACCAGCGGATGGGGAAGAAAATTCTTTGCAGCCTGCCTaGCTTTGCCAATCGCACAGC | + |
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Preference number: 4 (lower is better) Translates to: ASHMQLLQKCKPADGEENSLQPA*LCQSHS Trigger: GCTGTGCGATTGGCAAAGCCAGGCAGGCTGCAAAGA...ATTTTCTTCCCCATCCGCTGGTTTACATTTCTGTAACAGTTGCATATGGCTAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000160027.8 ENSMUST00000160864.8 ENSMUST00000162851.8 ENSMUST00000162898.2 |
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| 3UTR CAA 72 bp | TCACAGAGGAGGAGCTTAGTTAGGGAAGGGCCTCCATaGAGACCCAACTGTAAAGCATTTTCTCAATTAGTG | + |
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Preference number: 4 (lower is better) Translates to: SQRRSLVREGPP*RPNCKAFSQLV Trigger: CACTAATTGAGAAAATGCTTTACAGTTGGGTCTCAATGGAGGCCCTTCCCTAACTAAGCTCCTCCTCTGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160027.8 |
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| CDS-3UTR CCA 90 bp | GTATATATAGTCCATGGTGCTAGCCATATGCAACTGTTACAGAAATGTAAACCATCTTTGCAGCCTGCCTaGCTTTGCCAATCGCACAGC | + |
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Preference number: 4 (lower is better) Translates to: VYIVHGASHMQLLQKCKPSLQPA*LCQSHS Trigger: GCTGTGCGATTGGCAAAGCCAGGCAGGCTGCAAAGA...TGGTTTACATTTCTGTAACAGTTGCATATGGCTAGCACCATGGACTATATATAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000160027.8 ENSMUST00000160864.8 ENSMUST00000162851.8 ENSMUST00000162898.2 |
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| CDS-3UTR CCA 90 bp | TGGGTATATATAGTCCATGGTGCTAGCCATATGCAACTGTTACAGAAATGTAAATCTTTGCAGCCTGCCTaGCTTTGCCAATCGCACAGC | + |
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Preference number: 4 (lower is better) Translates to: WVYIVHGASHMQLLQKCKSLQPA*LCQSHS Trigger: GCTGTGCGATTGGCAAAGCCAGGCAGGCTGCAAAGA...TTTACATTTCTGTAACAGTTGCATATGGCTAGCACCATGGACTATATATACCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000160027.8 ENSMUST00000160864.8 ENSMUST00000162851.8 ENSMUST00000162898.2 |
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| CDS-3UTR TCA 90 bp | AACTGTTACAGAAATGTAAACCAGCGGATGGGGAAGAAAATATTACATATTGTCAGAGAACGTAGAGGCTaGCAAGTCATACCCAGTGCC | + |
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Preference number: 4 (lower is better) Translates to: NCYRNVNQRMGKKILHIVRERRG*QVIPSA Trigger: GGCACTGGGTATGACTTGTCAGCCTCTACGTTCTCT...GACAATATGTAATATTTTCTTCCCCATCCGCTGGTTTACATTTCTGTAACAGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000071704.4 ENSMUST00000162626.8 ENSMUST00000162851.8 |
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| CDS-3UTR TCA 90 bp | TTAATGAAAATCGGTCAGTGGGTATATATAGTCCATGGTGCTAGCCATATGCAAATTCACCAACCCAGCTaGGCTCCAGTTCAAAAGCTT | + |
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Preference number: 4 (lower is better) Translates to: LMKIGQWVYIVHGASHMQIHQPS*APVQKL Trigger: AAGCTTTTGAACTGGAGCTCAGCTGGGTTGGTGAAT...TTGCATATGGCTAGCACCATGGACTATATATACCCACTGACCGATTTTCATTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000160027.8 ENSMUST00000160864.8 |
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| 3UTR CAA 72 bp | ATACACACACACACACACACACACACACACACAAATTaGCCACCTGTCTACAAAGGAAATTGTTTCAGAGAT | + |
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Preference number: 4 (lower is better) Translates to: IHTHTHTHTHTN*PPVYKGNCFRD Trigger: ATCTCTGAAACAATTTCCTTTGTAGACAGGTGGCAAATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160027.8 |
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| CDS-3UTR CAA 90 bp | TTAGTGATCAAGTGGGGAGGGTCCCTTGTGGGCGGTGCCACCCCTGGACTAGTAGCAGCCTGCCTGGCTTaGCCAATCGCACAGCCCCAG | + |
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Preference number: 5 (lower is better) Translates to: LVIKWGGSLVGGATPGLVAACLA*PIAQPQ Trigger: CTGGGGCTGTGCGATTGGCAAAGCCAGGCAGGCTGC...TACTAGTCCAGGGGTGGCACCGCCCACAAGGGACCCTCCCCACTTGATCACTAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000160027.8 |
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| CDS-3UTR CAA 90 bp | GTGCTAGCCATATGCAACTGTTACAGAAATGTAAACCAGCGGATGGGGAAGAAAGCAGCCTGCCTGGCTTaGCCAATCGCACAGCCCCAG | + |
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Preference number: 5 (lower is better) Translates to: VLAICNCYRNVNQRMGKKAACLA*PIAQPQ Trigger: CTGGGGCTGTGCGATTGGCAAAGCCAGGCAGGCTGC...TTTCTTCCCCATCCGCTGGTTTACATTTCTGTAACAGTTGCATATGGCTAGCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000160027.8 ENSMUST00000160864.8 ENSMUST00000162851.8 ENSMUST00000162898.2 |
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| CDS-3UTR CAA 90 bp | TGTTACAGAAATGTAAACCAGCGGATGGGGAAGAAAATATTACATATTGTCATCGCAGCCTGCCTGGCTTaGCCAATCGCACAGCCCCAG | + |
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Preference number: 5 (lower is better) Translates to: CYRNVNQRMGKKILHIVIAACLA*PIAQPQ Trigger: CTGGGGCTGTGCGATTGGCAAAGCCAGGCAGGCTGC...GATGACAATATGTAATATTTTCTTCCCCATCCGCTGGTTTACATTTCTGTAACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000162851.8 ENSMUST00000162898.2 |
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| CDS-3UTR CAA 90 bp | TCCCTCCATGGCCTCTGCATCAGTTCCTGCTTTCTGACCTGTTTGAGTTCCAGTTCCTTCAAAGATTCCTaGGCATATTTCTCTGCTTCC | + |
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Preference number: 5 (lower is better) Translates to: SLHGLCISSCFLTCLSSSSFKDS*AYFSAS Trigger: GGAAGCAGAGAAATATGCCAAGGAATCTTTGAAGGA...ACTGGAACTCAAACAGGTCAGAAAGCAGGAACTGATGCAGAGGCCATGGAGGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160027.8 |
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| CDS-3UTR CAA 90 bp | ATAGTCCATGGTGCTAGCCATATGCAACTGTTACAGAAATGTAAACCAGCGGATAAGTTGGACCTAAAGTaGGATGCTTCTTCTCTCGCT | + |
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Preference number: 5 (lower is better) Translates to: IVHGASHMQLLQKCKPADKLDLK*DASSLA Trigger: AGCGAGAGAAGAAGCATCCAACTTTAGGTCCAACTT...ATCCGCTGGTTTACATTTCTGTAACAGTTGCATATGGCTAGCACCATGGACTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000160027.8 ENSMUST00000160864.8 |
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| CDS-3UTR CAA 90 bp | CTAGCCATATGCAACTGTTACAGAAATGTAAACCAGCGGATGGGGAAGAAAATAAAGTTGGACCTAAAGTaGGATGCTTCTTCTCTCGCT | + |
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Preference number: 5 (lower is better) Translates to: LAICNCYRNVNQRMGKKIKLDLK*DASSLA Trigger: AGCGAGAGAAGAAGCATCCAACTTTAGGTCCAACTT...TATTTTCTTCCCCATCCGCTGGTTTACATTTCTGTAACAGTTGCATATGGCTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000160027.8 ENSMUST00000160864.8 |
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| CDS-3UTR CAA 90 bp | TGGGTATATATAGTCCATGGTGCTAGCCATATGCAACTGTTACAGAAATGTAAATCCTTCAAAGATTCCTaGGCATATTTCTCTGCTTCC | + |
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Preference number: 5 (lower is better) Translates to: WVYIVHGASHMQLLQKCKSFKDS*AYFSAS Trigger: GGAAGCAGAGAAATATGCCAAGGAATCTTTGAAGGA...TTTACATTTCTGTAACAGTTGCATATGGCTAGCACCATGGACTATATATACCCA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000160027.8 ENSMUST00000160864.8 |
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