Pregenerated sensors for PSMA2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000015671Ensembl transcript IDs: ENSMUST00000170836.4, ENSMUST00000221168.2
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTAAGAGGACTTTATTGTTCTACTGCACTGGGGTCGTCCCAGACCTaGAGGAGATGCCGCAATAGCCTTTCTGCGAGTTTTTATATGTTT | + |
|
Preference number: 1 (lower is better) Translates to: VRGLYCSTALGSSQT*RRCRNSLSASFYMF Trigger: AAACATATAAAAACTCGCAGAAAGGCTATTGCGGCATCTCCTTCAGGTCTGGGACGACCCCAGTGCAGTAGAACAATAAAGTCCTCTTAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000221168.2 |
||
| 3UTR GCA 90 bp | GCTCTGGGTTCAAGTGATACATCACTGGTACCCAATAAACACACGTaGTCATACCCACACCACAGATATACAATAAATACACGAGTAACT | + |
|
Preference number: 1 (lower is better) Translates to: ALGSSDTSLVPNKHT*SYPHHRYTINTRVT Trigger: AGTTACTCGTGTATTTATTGTATATCTGTGGTGTGGGTATGAGCACGTGTGTTTATTGGGTACCAGTGATGTATCACTTGAACCCAGAGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170836.4 |
||
| 3UTR TCA 90 bp | TTCTTTGACTGTTGTGTCAGTGTTTGCTATGGTATCTTCTGCACCTaGAATTCTCTCTTCTATCTCTTGTATTCTGATAGTGATGCTTGC | + |
|
Preference number: 1 (lower is better) Translates to: FFDCCVSVCYGIFCT*NSLFYLLYSDSDAC Trigger: GCAAGCATCACTATCAGAATACAAGAGATAGAAGAGAGAATTTCAGGTGCAGAAGATACCATAGCAAACACTGACACAACAGTCAAAGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221168.2 |
||
| 3UTR-3UTR TCA 90 bp | AAATGTGAGACCTGGAGGATGGACACAGAACACCCACACAAATGTGGGGCAGCTAACCACATCCATTCATaGATCCAACCACGCTCTTTT | + |
|
Preference number: 2 (lower is better) Translates to: KCETWRMDTEHPHKCGAANHIHS*IQPRSF Trigger: AAAAGAGCGTGGTTGGATTCATGAATGGATGTGGTT...AGCTGCCCCACATTTGTGTGGGTGTTCTGTGTCCATCCTCCAGGTCTCACATTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170836.4 |
||
| 3UTR-3UTR TCA 90 bp | AAATGTGAGACCTGGAGGATGGACACAGAACACCCACACAAATGTGGGGCAGCTGAGACCAATTTTGTTTaGCACTCCATTGCTACAGTA | + |
|
Preference number: 2 (lower is better) Translates to: KCETWRMDTEHPHKCGAAETNFV*HSIATV Trigger: TACTGTAGCAATGGAGTGTCAAACAAAATTGGTCTC...AGCTGCCCCACATTTGTGTGGGTGTTCTGTGTCCATCCTCCAGGTCTCACATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170836.4 |
||
| 3UTR-3UTR TCA 90 bp | CCCAGACCTGAAGGAGATGCCGCAATAGCCTTTCTGCGAGTTTTTATATGTTTTCCAATGGCTCTGAGCTaGCCTCTTCAACCTTTTTCC | + |
|
Preference number: 2 (lower is better) Translates to: PRPEGDAAIAFLRVFICFPMALS*PLQPFS Trigger: GGAAAAAGGTTGAAGAGGTCAGCTCAGAGCCATTGG...AAAACATATAAAAACTCGCAGAAAGGCTATTGCGGCATCTCCTTCAGGTCTGGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000221168.2 |
||
| 3UTR-3UTR CCA 90 bp | CTGGTGGAATTTTCCAATGGCTCTGAGCTGACCTCTTCAACCTTTTTCCCTTACTCCTCATCTCTTTCCTaGGTTTTCTATCTCCAGGAT | + |
|
Preference number: 2 (lower is better) Translates to: LVEFSNGSELTSSTFFPYSSSLS*VFYLQD Trigger: ATCCTGGAGATAGAAAACCCAGGAAAGAGATGAGGA...GTAAGGGAAAAAGGTTGAAGAGGTCAGCTCAGAGCCATTGGAAAATTCCACCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000221168.2 |
||
| 3UTR-3UTR CCA 90 bp | GGACTCAAATACATCAAGGCGAATCTAGAGAGATTATTAATAATACTCAAGACCGTGAGACCTGGAGGATaGACACAGAACACCCACACA | + |
|
Preference number: 2 (lower is better) Translates to: GLKYIKANLERLLIILKTVRPGG*TQNTHT Trigger: TGTGTGGGTGTTCTGTGTCCATCCTCCAGGTCTCAC...GGTCTTGAGTATTATTAATAATCTCTCTAGATTCGCCTTGATGTATTTGAGTCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170836.4 |
||
| 3UTR CAA 90 bp | TGCAGAAACACACAGGATCTAACACACCATGATTTACTTACTCACTaGTCTCCTAGGAGACCAATTTTGTTTGACACTCCATTGCTACAG | + |
|
Preference number: 2 (lower is better) Translates to: CRNTQDLTHHDLLTH*SPRRPILFDTPLLQ Trigger: CTGTAGCAATGGAGTGTCAAACAAAATTGGTCTCCTAGGAGACAAGTGAGTAAGTAAATCATGGTGTGTTAGATCCTGTGTGTTTCTGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170836.4 |
||
| 3UTR-3UTR GCA 90 bp | GGACTCAAATACATCAAGGCGAATCTAGAGAGATTATTAATAATACTCAAGACCAGTACAACTACAGAATaGTCCCAGGCCCTGCTGAAC | + |
|
Preference number: 2 (lower is better) Translates to: GLKYIKANLERLLIILKTSTTTE*SQALLN Trigger: GTTCAGCAGGGCCTGGGAGCATTCTGTAGTTGTACT...GGTCTTGAGTATTATTAATAATCTCTCTAGATTCGCCTTGATGTATTTGAGTCC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170836.4 |
||
| 3UTR-3UTR CCA 90 bp | TTTGGTCTTCTCATTGTGTCCTGGATTTCCTGGATGTTTTGGGTTAGGAGCTTTTGTCAGTGTTTGCTATaGTATCTTCTGCACCTGAAA | + |
|
Preference number: 2 (lower is better) Translates to: FGLLIVSWISWMFWVRSFCQCLL*YLLHLK Trigger: TTTCAGGTGCAGAAGATACCATAGCAAACACTGACA...AAAGCTCCTAACCCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000221168.2 |
||
| 3UTR CAA 90 bp | GCATCATACTTCCACAAAGGAAATGGGTTTAAATGCCCCAAGTACTaGTTTGCTCTAAGGACTTACAGTGAAGGCTCTTCTCTCATTAAT | + |
|
Preference number: 2 (lower is better) Translates to: ASYFHKGNGFKCPKY*FALRTYSEGSSLIN Trigger: ATTAATGAGAGAAGAGCCTTCACTGTAAGTCCTTAGAGCAAACAAGTACTTGGGGCATTTAAACCCATTTCCTTTGTGGAAGTATGATGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170836.4 |
||
| 3UTR-3UTR GCA 90 bp | GCTAACAGAAATCCTACCTTTCCAACAATATCAAATTTACTTACACACACACACCGAGTACACTGTAGCTaGCTTCAAACACACCAGAAG | + |
|
Preference number: 2 (lower is better) Translates to: ANRNPTFPTISNLLTHTHRVHCS*LQTHQK Trigger: CTTCTGGTGTGTTTGAAGGCAGCTACAGTGTACTCG...GTGTGTGTGTGTAAGTAAATTTGATATTGTTGGAAAGGTAGGATTTCTGTTAGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170836.4 |
||
| 3UTR-3UTR TCA 90 bp | ATTTACTTACACACACACACACACACACTCACCAATGTAAGGGAGAAACCTTTTCCAAACAAAGCCTTATaGTTAATACTGTGCTGGACT | + |
|
Preference number: 2 (lower is better) Translates to: IYLHTHTHTLTNVREKPFPNKAL*LILCWT Trigger: AGTCCAGCACAGTATTAATCATAAGGCTTTGTTTGG...AAAAGGTTTCTCCCTTACATTGGTGAGTGTGTGTGTGTGTGTGTGTAAGTAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170836.4 |
||
| 3UTR-3UTR GCA 90 bp | GGACTCAAATACATCAAGGCGAATCTAGAGAGATTATTAATAATACTCAAGACCGGAAATGGGTTTAAATaGCCCAAGTACTTGTTTGCT | + |
|
Preference number: 2 (lower is better) Translates to: GLKYIKANLERLLIILKTGNGFK*PKYLFA Trigger: AGCAAACAAGTACTTGGGGCATTTAAACCCATTTCC...GGTCTTGAGTATTATTAATAATCTCTCTAGATTCGCCTTGATGTATTTGAGTCC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170836.4 |
||
| 3UTR TCA 72 bp | ATGACCACTGAAAGAACAGTCAGAGCTCTTAACCGCTaGGCCATCTCTCCAGCCCCAACTTTAATTTTGCTG | + |
|
Preference number: 3 (lower is better) Translates to: MTTERTVRALNR*AISPAPTLILL Trigger: CAGCAAAATTAAAGTTGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCTCTGACTGTTCTTTCAGTGGTCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170836.4 |
||
| 3UTR TCA 72 bp | GAATGCTCCCAGGCCCTGCTGAACCACATCCATTCATaGATCCAACCACGCTCTTTTCAGGAATTTATCAAA | + |
|
Preference number: 3 (lower is better) Translates to: ECSQALLNHIHS*IQPRSFQEFIK Trigger: TTTGATAAATTCCTGAAAAGAGCGTGGTTGGATTCATGAATGGATGTGGTTCAGCAGGGCCTGGGAGCATTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170836.4 |
||
| 3UTR-3UTR CAA 90 bp | CTGGTGGAATTTTCCAATGGCTCTGAGCTGACCTCTTCAACCTTTTTCCCTTACTGTGCATTTGGTGTTTaGACTATTATGAGACAGGAG | + |
|
Preference number: 3 (lower is better) Translates to: LVEFSNGSELTSSTFFPYCAFGV*TIMRQE Trigger: CTCCTGTCTCATAATAGTCAAAACACCAAATGCACA...GTAAGGGAAAAAGGTTGAAGAGGTCAGCTCAGAGCCATTGGAAAATTCCACCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000221168.2 |
||
| 3UTR CCA 72 bp | AGTGATGCTTGCATCTATGACTCCTCATCTCTTTCCTaGGTTTTCTATCTCCAGGATTGTCCAGATAGATTT | + |
|
Preference number: 3 (lower is better) Translates to: SDACIYDSSSLS*VFYLQDCPDRF Trigger: AAATCTATCTGGACAATCCTGGAGATAGAAAACCCAGGAAAGAGATGAGGAGTCATAGATGCAAGCATCACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221168.2 |
||
| 3UTR-3UTR CAA 90 bp | CCCAGACCTGAAGGAGATGCCGCAATAGCCTTTCTGCGAGTTTTTATATGTTTTTCTCTCTTCTATCTCTaGTATTCTGATAGTGATGCT | + |
|
Preference number: 3 (lower is better) Translates to: PRPEGDAAIAFLRVFICFSLFYL*YSDSDA Trigger: AGCATCACTATCAGAATACAAGAGATAGAAGAGAGA...AAAACATATAAAAACTCGCAGAAAGGCTATTGCGGCATCTCCTTCAGGTCTGGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000221168.2 |
||
| 3UTR-3UTR CAA 90 bp | GTTCTGTGGACTTCTTTTATGTTTATGGGCATCTTTTTCTTTAGGTTAGGGAAGAGTTTGGTCTTCTCATaGTGTCCTGGATTTCCTGGA | + |
|
Preference number: 3 (lower is better) Translates to: VLWTSFMFMGIFFFRLGKSLVFS*CPGFPG Trigger: TCCAGGAAATCCAGGACACAATGAGAAGACCAAACT...CTTCCCTAACCTAAAGAAAAAGATGCCCATAAACATAAAAGAAGTCCACAGAAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000221168.2 |
||
| 3UTR GCA 72 bp | CATGCATCATACTTCCACAAAGGAAATGGGTTTAAATaGCCCAAGTACTTGTTTGCTCTAAGGACTTACAGT | + |
|
Preference number: 3 (lower is better) Translates to: HASYFHKGNGFK*PKYLFALRTYS Trigger: ACTGTAAGTCCTTAGAGCAAACAAGTACTTGGGGCATTTAAACCCATTTCCTTTGTGGAAGTATGATGCATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170836.4 |
||
| 3UTR CCA 72 bp | CTTATTATCCTTAAGTTTGGTCTTCTCATTGTGTCCTaGATTTCCTGGATGTTTTGGGTTAGGAGCTTTTTG | + |
|
Preference number: 3 (lower is better) Translates to: LIILKFGLLIVS*ISWMFWVRSFL Trigger: CAAAAAGCTCCTAACCCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAACTTAAGGATAATAAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000221168.2 |
||
| 3UTR CCA 72 bp | GAGACAGGAGGAATTTCTTTTCTAGTCCAGTCTATTTaGAGTTCTGTGGACTTCTTTTATGTTTATGGGCAT | + |
|
Preference number: 3 (lower is better) Translates to: ETGGISFLVQSI*SSVDFFYVYGH Trigger: ATGCCCATAAACATAAAAGAAGTCCACAGAACTCCAAATAGACTGGACTAGAAAAGAAATTCCTCCTGTCTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000221168.2 |
||
| 3UTR GCA 72 bp | TTAAGATTTATTTTATTTATTCGAGTACACTGTAGCTaGCTTCAAACACACCAGAAGAGGGCATCAGATTCC | + |
|
Preference number: 3 (lower is better) Translates to: LRFILFIRVHCS*LQTHQKRASDS Trigger: GGAATCTGATGCCCTCTTCTGGTGTGTTTGAAGGCAGCTACAGTGTACTCGAATAAATAAAATAAATCTTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170836.4 |
||
| 3UTR-3UTR CAA 90 bp | GGACTCAAATACATCAAGGCGAATCTAGAGAGATTATTAATAATACTCAAGACCTTGTGTTTTATCTGCTaGTATGTTGTCCATATGTGC | + |
|
Preference number: 3 (lower is better) Translates to: GLKYIKANLERLLIILKTLCFIC*YVVHMC Trigger: GCACATATGGACAACATACAAGCAGATAAAACACAA...GGTCTTGAGTATTATTAATAATCTCTCTAGATTCGCCTTGATGTATTTGAGTCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170836.4 |
||
| CDS-3UTR CCA 90 bp | GATGCTTGCATCTATGACTCCTCATCTCTTTCCTGGGTTTTCTATCTCCAGGATATCCCTCACTTCAGTTaGAGTGAGCCTCCTAAAGCC | + |
|
Preference number: 4 (lower is better) Translates to: DACIYDSSSLSWVFYLQDIPHFS*SEPPKA Trigger: GGCTTTAGGAGGCTCACTCCAACTGAAGTGAGGGAT...ATCCTGGAGATAGAAAACCCAGGAAAGAGATGAGGAGTCATAGATGCAAGCATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221168.2 |
||
| 3UTR CAA 72 bp | TTGTCTCCTAGGAGACCAATTTTGTTTGACACTCCATaGCTACAGTACAACTACAGAATGCTCCCAGGCCCT | + |
|
Preference number: 4 (lower is better) Translates to: LSPRRPILFDTP*LQYNYRMLPGP Trigger: AGGGCCTGGGAGCATTCTGTAGTTGTACTGTAGCAATGGAGTGTCAAACAAAATTGGTCTCCTAGGAGACAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170836.4 |
||
| CDS-3UTR GCA 90 bp | ATTTACTTACACACACACACACACACACTCACCAATGTAAGGGAGAAACCTTTTCGAACACCACCTGACTaGGTGTACTCCTGCATCACA | + |
|
Preference number: 4 (lower is better) Translates to: IYLHTHTHTLTNVREKPFRTPPD*VYSCIT Trigger: TGTGATGCAGGAGTACACGCAGTCAGGTGGTGTTCG...AAAAGGTTTCTCCCTTACATTGGTGAGTGTGTGTGTGTGTGTGTGTAAGTAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170836.4 |
||
| CDS-3UTR TCA 90 bp | TTTGGTCTTCTCATTGTGTCCTGGATTTCCTGGATGTTTTGGGTTAGGAGCTTTGTTAAGATGGCTGTATaGATGGCATCCTCCAGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: FGLLIVSWISWMFWVRSFVKMAV*MASSSS Trigger: AGAACTGGAGGATGCCATTCATACAGCCATCTTAAC...AAAGCTCCTAACCCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221168.2 |
||
| CDS-3UTR GCA 90 bp | CTTATTATCCTTAAGTTTGGTCTTCTCATTGTGTCCTGGATTTCCTGGATGTTTCGAACACCACCTGACTaGGTGTACTCCTGCATCACA | + |
|
Preference number: 4 (lower is better) Translates to: LIILKFGLLIVSWISWMFRTPPD*VYSCIT Trigger: TGTGATGCAGGAGTACACGCAGTCAGGTGGTGTTCG...AAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAACTTAAGGATAATAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221168.2 |
||
| CDS-3UTR CCA 90 bp | ATTTACTTACACACACACACACACACACTCACCAATGTAAGGGAGAAACCTTTTTCTTTCCCATTGCTGTaGCCTTCCAGGCAAAGTAAG | + |
|
Preference number: 4 (lower is better) Translates to: IYLHTHTHTLTNVREKPFSFPLL*PSRQSK Trigger: CTTACTTTGCCTGGAAGGCCACAGCAATGGGAAAGA...AAAAGGTTTCTCCCTTACATTGGTGAGTGTGTGTGTGTGTGTGTGTAAGTAAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170836.4 |
||
| CDS-3UTR CCA 90 bp | CATCCATTCATGAATCCAACCACGCTCTTTTCAGGAATTTATCAAAGTACAGATATCCCTCACTTCAGTTaGAGTGAGCCTCCTAAAGCC | + |
|
Preference number: 4 (lower is better) Translates to: HPFMNPTTLFSGIYQSTDIPHFS*SEPPKA Trigger: GGCTTTAGGAGGCTCACTCCAACTGAAGTGAGGGAT...ATCTGTACTTTGATAAATTCCTGAAAAGAGCGTGGTTGGATTCATGAATGGATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170836.4 |
||
| CDS-3UTR CCA 90 bp | GTTCTGTGGACTTCTTTTATGTTTATGGGCATCTTTTTCTTTAGGTTAGGGAAGTCTTTCCCATTGCTGTaGCCTTCCAGGCAAAGTAAG | + |
|
Preference number: 4 (lower is better) Translates to: VLWTSFMFMGIFFFRLGKSFPLL*PSRQSK Trigger: CTTACTTTGCCTGGAAGGCCACAGCAATGGGAAAGA...CTTCCCTAACCTAAAGAAAAAGATGCCCATAAACATAAAAGAAGTCCACAGAAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000221168.2 |
||
| 3UTR CAA 72 bp | ACACAGGATCTAACACACCATGATTTACTTACTCACTaGTCTCCTAGGAGACCAATTTTGTTTGACACTCCA | + |
|
Preference number: 4 (lower is better) Translates to: TQDLTHHDLLTH*SPRRPILFDTP Trigger: TGGAGTGTCAAACAAAATTGGTCTCCTAGGAGACAAGTGAGTAAGTAAATCATGGTGTGTTAGATCCTGTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170836.4 |
||
| CDS-3UTR TCA 90 bp | GCTAACAGAAATCCTACCTTTCCAACAATATCAAATTTACTTACACACACACACGTTAAGATGGCTGTATaGATGGCATCCTCCAGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: ANRNPTFPTISNLLTHTHVKMAV*MASSSS Trigger: AGAACTGGAGGATGCCATTCATACAGCCATCTTAAC...GTGTGTGTGTGTAAGTAAATTTGATATTGTTGGAAAGGTAGGATTTCTGTTAGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170836.4 |
||
| 3UTR CAA 72 bp | GATTTACTTACTCACTTGTCTCCTAGGAGACCAATTTaGTTTGACACTCCATTGCTACAGTACAACTACAGA | + |
|
Preference number: 4 (lower is better) Translates to: DLLTHLSPRRPI*FDTPLLQYNYR Trigger: TCTGTAGTTGTACTGTAGCAATGGAGTGTCAAACAAAATTGGTCTCCTAGGAGACAAGTGAGTAAGTAAATC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170836.4 |
||
| CDS-3UTR TCA 90 bp | TATTATGAGACAGGAGGAATTTCTTTTCTAGTCCAGTCTATTTGGAGTTCTGTGCATTCCACCCACAAATaGGTAAAGAAACACCAAATG | + |
|
Preference number: 4 (lower is better) Translates to: YYETGGISFLVQSIWSSVHSTHK*VKKHQM Trigger: CATTTGGTGTTTCTTTACTCATTTGTGGGTGGAATG...CACAGAACTCCAAATAGACTGGACTAGAAAAGAAATTCCTCCTGTCTCATAATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221168.2 |
||
| CDS-3UTR GCA 90 bp | ATTTACTTACACACACACACACACACACTCACCAATGTAAGGGAGAAACCTTTTTACAGGATGGATTTCTaGTTTTTCTCGGTTGCTAAT | + |
|
Preference number: 4 (lower is better) Translates to: IYLHTHTHTLTNVREKPFYRMDF*FFSVAN Trigger: ATTAGCAACCGAGAAAAAGCAGAAATCCATCCTGTA...AAAAGGTTTCTCCCTTACATTGGTGAGTGTGTGTGTGTGTGTGTGTAAGTAAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000170836.4 |
||
| 3UTR CAA 72 bp | CTTCTATACTTATTATCCTTAAGTTTGGTCTTCTCATaGTGTCCTGGATTTCCTGGATGTTTTGGGTTAGGA | + |
|
Preference number: 4 (lower is better) Translates to: LLYLLSLSLVFS*CPGFPGCFGLG Trigger: TCCTAACCCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAACTTAAGGATAATAAGTATAGAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221168.2 |
||
| CDS-3UTR TCA 90 bp | GCTAACAGAAATCCTACCTTTCCAACAATATCAAATTTACTTACACACACACACCATTCCACCCACAAATaGGTAAAGAAACACCAAATG | + |
|
Preference number: 4 (lower is better) Translates to: ANRNPTFPTISNLLTHTHHSTHK*VKKHQM Trigger: CATTTGGTGTTTCTTTACTCATTTGTGGGTGGAATG...GTGTGTGTGTGTAAGTAAATTTGATATTGTTGGAAAGGTAGGATTTCTGTTAGC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170836.4 |
||
| CDS-3UTR CAA 90 bp | GAGGGAGATGCAGCTCTGACCTTAGTTATATTACCACTATTTATATTTAACCTTTCTGCTTTTTCTCGGTaGCTAATACTACGCCATTTG | + |
|
Preference number: 5 (lower is better) Translates to: EGDAALTLVILPLFIFNLSAFSR*LILRHL Trigger: CAAATGGCGTAGTATTAGCAACCGAGAAAAAGCAGA...AAGGTTAAATATAAATAGTGGTAATATAACTAAGGTCAGAGCTGCATCTCCCTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170836.4 |
||