Pregenerated sensors for PSIP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028484Ensembl transcript IDs: ENSMUST00000030207.15, ENSMUST00000107214.9, ENSMUST00000107215.9, ENSMUST00000126706.8
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AAGTCACTTTCCAATGGAATTCCAAAGCCTAAGGATGAACTATCCTaGCTGATAAAAACCAACAGCTGGCCTGATCGCTCAGAACACCTG | + |
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Preference number: 1 (lower is better) Translates to: KSLSNGIPKPKDELS*LIKTNSWPDRSEHL Trigger: CAGGTGTTCTGAGCGATCAGGCCAGCTGTTGGTTTTTATCAGGCAGGATAGTTCATCCTTAGGCTTTGGAATTCCATTGGAAAGTGACTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| 3UTR CCA 90 bp | TTACTTTGGAAAGTAAACAAATTTGTACCTTCTATAACAACCTGGTaGCTATCTAGCTGTCATACAGACTACGCATTATTACAAAGAGGC | + |
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Preference number: 1 (lower is better) Translates to: LLWKVNKFVPSITTW*LSSCHTDYALLQRG Trigger: GCCTCTTTGTAATAATGCGTAGTCTGTATGACAGCTAGATAGCCACCAGGTTGTTATAGAAGGTACAAATTTGTTTACTTTCCAAAGTAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| 3UTR-3UTR GCA 90 bp | GGGCACACCTGCCCCAGTTTTCAAGAACGTAATAGCTACTCCAGTTTAATACCTTGTCAAGGGCACACCTaGCCCAGTTTTCAAGAACGT | + |
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Preference number: 2 (lower is better) Translates to: GHTCPSFQERNSYSSLIPCQGHT*PSFQER Trigger: ACGTTCTTGAAAACTGGGGCAGGTGTGCCCTTGACA...AGGTATTAAACTGGAGTAGCTATTACGTTCTTGAAAACTGGGGCAGGTGTGCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000107214.9 ENSMUST00000107215.9 ENSMUST00000126706.8 |
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| 3UTR-3UTR GCA 90 bp | TCTGAGAAATCAAGAACATATTTAATCACATCGCACAAAAACCCTGGTATGAAGAAGGATGAACTATCCTaGCTGATAAAAACCAACAGC | + |
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Preference number: 2 (lower is better) Translates to: SEKSRTYLITSHKNPGMKKDELS*LIKTNS Trigger: GCTGTTGGTTTTTATCAGGCAGGATAGTTCATCCTT...CTTCATACCAGGGTTTTTGTGCGATGTGATTAAATATGTTCTTGATTTCTCAGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| 3UTR-3UTR TCA 90 bp | TCTGAGAAATCAAGAACATATTTAATCACATCGCACAAAAACCCTGGTATGAAGCCTAAGTATTTCAAATaGAGTCACTCACAAGACTTC | + |
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Preference number: 2 (lower is better) Translates to: SEKSRTYLITSHKNPGMKPKYFK*SHSQDF Trigger: GAAGTCTTGTGAGTGACTTCATTTGAAATACTTAGG...CTTCATACCAGGGTTTTTGTGCGATGTGATTAAATATGTTCTTGATTTCTCAGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| 3UTR-3UTR CAA 90 bp | GGGCACACCTGCCCCAGTTTTCAAGAACGTAATAGCTACTCCAGTTTAATACCTACTGTAGATTACATGTaGTTTGGCTGGGAATACAAT | + |
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Preference number: 3 (lower is better) Translates to: GHTCPSFQERNSYSSLIPTVDYM*FGWEYN Trigger: ATTGTATTCCCAGCCAAACAACATGTAATCTACAGT...AGGTATTAAACTGGAGTAGCTATTACGTTCTTGAAAACTGGGGCAGGTGTGCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107214.9 |
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| 3UTR-3UTR CAA 90 bp | TCTGAGAAATCAAGAACATATTTAATCACATCGCACAAAAACCCTGGTATGAAGAGTGATAGTTCATGTTaGTGTGTGTGGACTATCTGG | + |
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Preference number: 3 (lower is better) Translates to: SEKSRTYLITSHKNPGMKSDSSC*CVWTIW Trigger: CCAGATAGTCCACACACACAAACATGAACTATCACT...CTTCATACCAGGGTTTTTGTGCGATGTGATTAAATATGTTCTTGATTTCTCAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| 3UTR CCA 72 bp | TGGAAAGTAAACAAATTTGTACCTTCTATAACAACCTaGTGGCTATCTAGCTGTCATACAGACTACGCATTA | + |
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Preference number: 3 (lower is better) Translates to: WKVNKFVPSITT*WLSSCHTDYAL Trigger: TAATGCGTAGTCTGTATGACAGCTAGATAGCCACCAGGTTGTTATAGAAGGTACAAATTTGTTTACTTTCCA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| 3UTR-3UTR CAA 90 bp | TCTGAGAAATCAAGAACATATTTAATCACATCGCACAAAAACCCTGGTATGAAGCAAAACCCACGGTATTaGGGAAAGATTTATACAAGT | + |
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Preference number: 3 (lower is better) Translates to: SEKSRTYLITSHKNPGMKQNPRY*GKIYTS Trigger: ACTTGTATAAATCTTTCCCAAATACCGTGGGTTTTG...CTTCATACCAGGGTTTTTGTGCGATGTGATTAAATATGTTCTTGATTTCTCAGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| 3UTR CCA 72 bp | AAAGTAAACAAATTTGTACCTTCTATAACAACCTGGTaGCTATCTAGCTGTCATACAGACTACGCATTATTA | + |
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Preference number: 3 (lower is better) Translates to: KVNKFVPSITTW*LSSCHTDYALL Trigger: TAATAATGCGTAGTCTGTATGACAGCTAGATAGCCACCAGGTTGTTATAGAAGGTACAAATTTGTTTACTTT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| CDS-3UTR GCA 90 bp | GGGCACACCTGCCCCAGTTTTCAAGAACGTAATAGCTACTCCAGTTTAATACCTCACATTAGAAGCGGTTaGTGCAGTCACCATTCCCGC | + |
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Preference number: 4 (lower is better) Translates to: GHTCPSFQERNSYSSLIPHIRSG*CSHHSR Trigger: GCGGGAATGGTGACTGCAGCAACCGCTTCTAATGTG...AGGTATTAAACTGGAGTAGCTATTACGTTCTTGAAAACTGGGGCAGGTGTGCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000107214.9 ENSMUST00000107215.9 |
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| CDS-3UTR GCA 90 bp | GGGCACACCTGCCCCAGTTTTCAAGAACGTAATAGCTACTCCAGTTTAATACCTTTTGTTCCTCCTGCTTaGGTTTCCGATCTCCAGCTT | + |
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Preference number: 4 (lower is better) Translates to: GHTCPSFQERNSYSSLIPFVPPA*VSDLQL Trigger: AAGCTGGAGATCGGAAACGCAAGCAGGAGGAACAAA...AGGTATTAAACTGGAGTAGCTATTACGTTCTTGAAAACTGGGGCAGGTGTGCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000107214.9 ENSMUST00000107215.9 ENSMUST00000126706.8 |
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| CDS-3UTR GCA 90 bp | GGGCACACCTGCCCCAGTTTTCAAGAACGTAATAGCTACTCCAGTTTAATACCTTCCATTTGTTCCTCCTaGTTGCGTTTCCGATCTCCA | + |
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Preference number: 4 (lower is better) Translates to: GHTCPSFQERNSYSSLIPSICSS*LRFRSP Trigger: TGGAGATCGGAAACGCAAGCAGGAGGAACAAATGGA...AGGTATTAAACTGGAGTAGCTATTACGTTCTTGAAAACTGGGGCAGGTGTGCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000107214.9 ENSMUST00000107215.9 ENSMUST00000126706.8 |
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| CDS-3UTR CCA 90 bp | GGGCACACCTGCCCCAGTTTTCAAGAACGTAATAGCTACTCCAGTTTAATACCTTCACATCCTCATTGCTaGCCTTTTCTTCCTGATCAG | + |
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Preference number: 4 (lower is better) Translates to: GHTCPSFQERNSYSSLIPSHPHC*PFLPDQ Trigger: CTGATCAGGAAGAAAAGGCCAGCAATGAGGATGTGA...AGGTATTAAACTGGAGTAGCTATTACGTTCTTGAAAACTGGGGCAGGTGTGCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000107214.9 ENSMUST00000107215.9 |
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| CDS-3UTR TCA 90 bp | GGGCACACCTGCCCCAGTTTTCAAGAACGTAATAGCTACTCCAGTTTAATACCTTTCTTTTCACCCTCTTaGTCGTCTTCGTCTTCTGAA | + |
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Preference number: 4 (lower is better) Translates to: GHTCPSFQERNSYSSLIPFFSPS*SSSSSE Trigger: TTCAGAAGACGAAGACGATCAAGAGGGTGAAAAGAA...AGGTATTAAACTGGAGTAGCTATTACGTTCTTGAAAACTGGGGCAGGTGTGCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000107214.9 ENSMUST00000107215.9 ENSMUST00000126706.8 |
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| CDS-3UTR GCA 90 bp | GGGCACACCTGCCCCAGTTTTCAAGAACGTAATAGCTACTCCAGTTTAATACCTTCCTCTCTTAGGACTTaGTTTCACATTAGAAGCGGT | + |
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Preference number: 4 (lower is better) Translates to: GHTCPSFQERNSYSSLIPSSLRT*FHIRSG Trigger: ACCGCTTCTAATGTGAAAGCAAGTCCTAAGAGAGGA...AGGTATTAAACTGGAGTAGCTATTACGTTCTTGAAAACTGGGGCAGGTGTGCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000107214.9 ENSMUST00000107215.9 |
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| CDS-3UTR TCA 90 bp | GGGCACACCTGCCCCAGTTTTCAAGAACGTAATAGCTACTCCAGTTTAATACCTATCAGTGTCTTCCTTTaGAACGTTAGTCTCTTTTTC | + |
|
Preference number: 4 (lower is better) Translates to: GHTCPSFQERNSYSSLIPISVFL*NVSLFF Trigger: GAAAAAGAGACTAACGTTTCAAAGGAAGACACTGAT...AGGTATTAAACTGGAGTAGCTATTACGTTCTTGAAAACTGGGGCAGGTGTGCCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000107214.9 ENSMUST00000107215.9 |
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| CDS-3UTR TCA 90 bp | TCTGAGAAATCAAGAACATATTTAATCACATCGCACAAAAACCCTGGTATGAAGAGCATGTTCCTCCTGTaGGCAGCCTGGAAGTTCCTT | + |
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Preference number: 4 (lower is better) Translates to: SEKSRTYLITSHKNPGMKSMFLL*AAWKFL Trigger: AAGGAACTTCCAGGCTGCTCACAGGAGGAACATGCT...CTTCATACCAGGGTTTTTGTGCGATGTGATTAAATATGTTCTTGATTTCTCAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| CDS-3UTR GCA 90 bp | TCTGAGAAATCAAGAACATATTTAATCACATCGCACAAAAACCCTGGTATGAAGCACATTAGAAGCGGTTaGTGCAGTCACCATTCCCGC | + |
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Preference number: 4 (lower is better) Translates to: SEKSRTYLITSHKNPGMKHIRSG*CSHHSR Trigger: GCGGGAATGGTGACTGCAGCAACCGCTTCTAATGTG...CTTCATACCAGGGTTTTTGTGCGATGTGATTAAATATGTTCTTGATTTCTCAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| CDS-3UTR GCA 90 bp | GGGCACACCTGCCCCAGTTTTCAAGAACGTAATAGCTACTCCAGTTTAATACCTTTACATGTTGTTTGGTaGTCAGTTTCCATTTGTTCC | + |
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Preference number: 4 (lower is better) Translates to: GHTCPSFQERNSYSSLIPLHVVW*SVSICS Trigger: GGAACAAATGGAAACTGAGCACCAAACAACATGTAA...AGGTATTAAACTGGAGTAGCTATTACGTTCTTGAAAACTGGGGCAGGTGTGCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107215.9 |
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| CDS-3UTR GCA 90 bp | TCTGAGAAATCAAGAACATATTTAATCACATCGCACAAAAACCCTGGTATGAAGCTTGACTTCAGTAGCTaGAGGTCGTCCTCTCTTAGG | + |
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Preference number: 4 (lower is better) Translates to: SEKSRTYLITSHKNPGMKLDFSS*RSSSLR Trigger: CCTAAGAGAGGACGACCTGCAGCTACTGAAGTCAAG...CTTCATACCAGGGTTTTTGTGCGATGTGATTAAATATGTTCTTGATTTCTCAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| CDS-3UTR CCA 90 bp | TCTGAGAAATCAAGAACATATTTAATCACATCGCACAAAAACCCTGGTATGAAGTCTCTCTTCTCCAGGTaGCTTTGTCTTACTGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: SEKSRTYLITSHKNPGMKSLFSR*LCLTAG Trigger: GCCAGCAGTAAGACAAAGCCACCTGGAGAAGAGAGA...CTTCATACCAGGGTTTTTGTGCGATGTGATTAAATATGTTCTTGATTTCTCAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| CDS-3UTR CCA 90 bp | GGGCACACCTGCCCCAGTTTTCAAGAACGTAATAGCTACTCCAGTTTAATACCTAGATTACATGTTGTTTaGTGCTCAGTTTCCATTTGT | + |
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Preference number: 4 (lower is better) Translates to: GHTCPSFQERNSYSSLIPRLHVV*CSVSIC Trigger: ACAAATGGAAACTGAGCACCAAACAACATGTAATCT...AGGTATTAAACTGGAGTAGCTATTACGTTCTTGAAAACTGGGGCAGGTGTGCCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107215.9 |
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| CDS-3UTR TCA 90 bp | TCTGAGAAATCAAGAACATATTTAATCACATCGCACAAAAACCCTGGTATGAAGTGCTGCATTGTTACCTaGAGTGAAGCGAGTTCATCC | + |
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Preference number: 4 (lower is better) Translates to: SEKSRTYLITSHKNPGMKCCIVT*SEASSS Trigger: GGATGAACTCGCTTCACTTCAGGTAACAATGCAGCA...CTTCATACCAGGGTTTTTGTGCGATGTGATTAAATATGTTCTTGATTTCTCAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| CDS-3UTR TCA 90 bp | TCTGAGAAATCAAGAACATATTTAATCACATCGCACAAAAACCCTGGTATGAAGCACTTGGGTGATGACTaGATCTCCTTCACCAACCAA | + |
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Preference number: 4 (lower is better) Translates to: SEKSRTYLITSHKNPGMKHLGDD*ISFTNQ Trigger: TTGGTTGGTGAAGGAGATTCAGTCATCACCCAAGTG...CTTCATACCAGGGTTTTTGTGCGATGTGATTAAATATGTTCTTGATTTCTCAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| CDS-3UTR GCA 90 bp | TCTGAGAAATCAAGAACATATTTAATCACATCGCACAAAAACCCTGGTATGAAGTTTGTTCCTCCTGCTTaGGTTTCCGATCTCCAGCTT | + |
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Preference number: 4 (lower is better) Translates to: SEKSRTYLITSHKNPGMKFVPPA*VSDLQL Trigger: AAGCTGGAGATCGGAAACGCAAGCAGGAGGAACAAA...CTTCATACCAGGGTTTTTGTGCGATGTGATTAAATATGTTCTTGATTTCTCAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| CDS-3UTR GCA 90 bp | TCTGAGAAATCAAGAACATATTTAATCACATCGCACAAAAACCCTGGTATGAAGTCCATTTGTTCCTCCTaGTTGCGTTTCCGATCTCCA | + |
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Preference number: 4 (lower is better) Translates to: SEKSRTYLITSHKNPGMKSICSS*LRFRSP Trigger: TGGAGATCGGAAACGCAAGCAGGAGGAACAAATGGA...CTTCATACCAGGGTTTTTGTGCGATGTGATTAAATATGTTCTTGATTTCTCAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| CDS-3UTR TCA 90 bp | TCTGAGAAATCAAGAACATATTTAATCACATCGCACAAAAACCCTGGTATGAAGGGCCCTTTCTTCCCCTaGTCTTTGGTTTTATTTGCT | + |
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Preference number: 4 (lower is better) Translates to: SEKSRTYLITSHKNPGMKGPFFP*SLVLFA Trigger: AGCAAATAAAACCAAAGATCAGGGGAAGAAAGGGCC...CTTCATACCAGGGTTTTTGTGCGATGTGATTAAATATGTTCTTGATTTCTCAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| CDS-3UTR CCA 90 bp | TCTGAGAAATCAAGAACATATTTAATCACATCGCACAAAAACCCTGGTATGAAGTCACATCCTCATTGCTaGCCTTTTCTTCCTGATCAG | + |
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Preference number: 4 (lower is better) Translates to: SEKSRTYLITSHKNPGMKSHPHC*PFLPDQ Trigger: CTGATCAGGAAGAAAAGGCCAGCAATGAGGATGTGA...CTTCATACCAGGGTTTTTGTGCGATGTGATTAAATATGTTCTTGATTTCTCAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| CDS-3UTR TCA 90 bp | TCTGAGAAATCAAGAACATATTTAATCACATCGCACAAAAACCCTGGTATGAAGTTCTTTTCACCCTCTTaGTCGTCTTCGTCTTCTGAA | + |
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Preference number: 4 (lower is better) Translates to: SEKSRTYLITSHKNPGMKFFSPS*SSSSSE Trigger: TTCAGAAGACGAAGACGATCAAGAGGGTGAAAAGAA...CTTCATACCAGGGTTTTTGTGCGATGTGATTAAATATGTTCTTGATTTCTCAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| CDS-3UTR TCA 90 bp | TCTGAGAAATCAAGAACATATTTAATCACATCGCACAAAAACCCTGGTATGAAGAAGTCGAGAATCCATTaGTGTTTCTCGCTTCTTCTC | + |
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Preference number: 4 (lower is better) Translates to: SEKSRTYLITSHKNPGMKKSRIH*CFSLLL Trigger: GAGAAGAAGCGAGAAACATCAATGGATTCTCGACTT...CTTCATACCAGGGTTTTTGTGCGATGTGATTAAATATGTTCTTGATTTCTCAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| CDS-3UTR TCA 90 bp | TCTGAGAAATCAAGAACATATTTAATCACATCGCACAAAAACCCTGGTATGAAGTTTTCCATGATAACTTaGCTGACTTTGAACCGCCGT | + |
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Preference number: 4 (lower is better) Translates to: SEKSRTYLITSHKNPGMKFSMIT*LTLNRR Trigger: ACGGCGGTTCAAAGTCAGTCAAGTTATCATGGAAAA...CTTCATACCAGGGTTTTTGTGCGATGTGATTAAATATGTTCTTGATTTCTCAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| CDS-3UTR GCA 90 bp | TCTGAGAAATCAAGAACATATTTAATCACATCGCACAAAAACCCTGGTATGAAGTCCTCTCTTAGGACTTaGTTTCACATTAGAAGCGGT | + |
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Preference number: 4 (lower is better) Translates to: SEKSRTYLITSHKNPGMKSSLRT*FHIRSG Trigger: ACCGCTTCTAATGTGAAAGCAAGTCCTAAGAGAGGA...CTTCATACCAGGGTTTTTGTGCGATGTGATTAAATATGTTCTTGATTTCTCAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| CDS-3UTR CCA 90 bp | TCTGAGAAATCAAGAACATATTTAATCACATCGCACAAAAACCCTGGTATGAAGGATTTGTTCAGCACTTaGGTGATGACTGAATCTCCT | + |
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Preference number: 4 (lower is better) Translates to: SEKSRTYLITSHKNPGMKDLFST*VMTESP Trigger: AGGAGATTCAGTCATCACCCAAGTGCTGAACAAATC...CTTCATACCAGGGTTTTTGTGCGATGTGATTAAATATGTTCTTGATTTCTCAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| CDS-3UTR TCA 90 bp | TCTGAGAAATCAAGAACATATTTAATCACATCGCACAAAAACCCTGGTATGAAGTCAGCATGTATCCTTTaGAGTCGAGAATCCATTGAT | + |
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Preference number: 4 (lower is better) Translates to: SEKSRTYLITSHKNPGMKSACIL*SRESID Trigger: ATCAATGGATTCTCGACTTCAAAGGATACATGCTGA...CTTCATACCAGGGTTTTTGTGCGATGTGATTAAATATGTTCTTGATTTCTCAGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| CDS-3UTR CCA 90 bp | TCTGAGAAATCAAGAACATATTTAATCACATCGCACAAAAACCCTGGTATGAAGATCACCATTATGCTGTaGATGATTACTCTCTTGAGC | + |
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Preference number: 4 (lower is better) Translates to: SEKSRTYLITSHKNPGMKITIML*MITLLS Trigger: GCTCAAGAGAGTAATCATCCACAGCATAATGGTGAT...CTTCATACCAGGGTTTTTGTGCGATGTGATTAAATATGTTCTTGATTTCTCAGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| CDS-3UTR TCA 90 bp | TCTGAGAAATCAAGAACATATTTAATCACATCGCACAAAAACCCTGGTATGAAGATCAGTGTCTTCCTTTaGAACGTTAGTCTCTTTTTC | + |
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Preference number: 4 (lower is better) Translates to: SEKSRTYLITSHKNPGMKISVFL*NVSLFF Trigger: GAAAAAGAGACTAACGTTTCAAAGGAAGACACTGAT...CTTCATACCAGGGTTTTTGTGCGATGTGATTAAATATGTTCTTGATTTCTCAGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| CDS-3UTR CCA 90 bp | TCTGAGAAATCAAGAACATATTTAATCACATCGCACAAAAACCCTGGTATGAAGTCTTCCCCTGATCTTTaGTTTTATTTGCTTCCTCAT | + |
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Preference number: 4 (lower is better) Translates to: SEKSRTYLITSHKNPGMKSSPDL*FYLLPH Trigger: ATGAGGAAGCAAATAAAACCAAAGATCAGGGGAAGA...CTTCATACCAGGGTTTTTGTGCGATGTGATTAAATATGTTCTTGATTTCTCAGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| CDS GCA 90 bp | GAGATATTTCAGCCTCTCTCTCTTCTCCAGGTGGCTTTGTCTTACTaGTGGCCTCGCGGCTGTCTTTGCCGTCTTCGTTACTATCACCAT | + |
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Preference number: 5 (lower is better) Translates to: EIFQPLSLLQVALSY*WPRGCLCRLRYYHH Trigger: ATGGTGATAGTAACGAAGACGGCAAAGACAGCCGCGAGGCCAGCAGTAAGACAAAGCCACCTGGAGAAGAGAGAGAGGCTGAAATATCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| CDS TCA 90 bp | GCAGCCTGGAAGTTCCTTCCACCCTTTCTCTTCTTTTCACCCTCTTaGTCGTCTTCGTCTTCTGAATCAGAGGTTGATGTAACCCCTGGT | + |
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Preference number: 5 (lower is better) Translates to: AAWKFLPPFLFFSPS*SSSSSESEVDVTPG Trigger: ACCAGGGGTTACATCAACCTCTGATTCAGAAGACGAAGACGATCAAGAGGGTGAAAAGAAGAGAAAGGGTGGAAGGAACTTCCAGGCTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030207.15 ENSMUST00000107214.9 ENSMUST00000107215.9 |
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| CDS CCA 90 bp | ATATTTCAGCCTCTCTCTCTTCTCCAGGTGGCTTTGTCTTACTGCTaGCCTCGCGGCTGTCTTTGCCGTCTTCGTTACTATCACCATTAT | + |
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Preference number: 5 (lower is better) Translates to: IFQPLSLLQVALSYC*PRGCLCRLRYYHHY Trigger: ATAATGGTGATAGTAACGAAGACGGCAAAGACAGCCGCGAGGCCAGCAGTAAGACAAAGCCACCTGGAGAAGAGAGAGAGGCTGAAATAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| CDS-3UTR CAA 90 bp | GGGCACACCTGCCCCAGTTTTCAAGAACGTAATAGCTACTCCAGTTTAATACCTCTTGGTTTGGGAATCTaGACTTCAGTAGCTGCAGGT | + |
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Preference number: 5 (lower is better) Translates to: GHTCPSFQERNSYSSLIPLGLGI*TSVAAG Trigger: ACCTGCAGCTACTGAAGTCAAGATTCCCAAACCAAG...AGGTATTAAACTGGAGTAGCTATTACGTTCTTGAAAACTGGGGCAGGTGTGCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000107214.9 ENSMUST00000107215.9 |
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| CDS-3UTR CAA 90 bp | GGGCACACCTGCCCCAGTTTTCAAGAACGTAATAGCTACTCCAGTTTAATACCTACATCAGACGATGCATaGGATTGTTTAGTTGATGCC | + |
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Preference number: 5 (lower is better) Translates to: GHTCPSFQERNSYSSLIPTSDDA*DCLVDA Trigger: GGCATCAACTAAACAATCCAATGCATCGTCTGATGT...AGGTATTAAACTGGAGTAGCTATTACGTTCTTGAAAACTGGGGCAGGTGTGCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000107214.9 ENSMUST00000107215.9 |
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| CDS-3UTR CAA 90 bp | GGGCACACCTGCCCCAGTTTTCAAGAACGTAATAGCTACTCCAGTTTAATACCTACTGTAGATTACATGTaGTTTGGTGCTCAGTTTCCA | + |
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Preference number: 5 (lower is better) Translates to: GHTCPSFQERNSYSSLIPTVDYM*FGAQFP Trigger: TGGAAACTGAGCACCAAACAACATGTAATCTACAGT...AGGTATTAAACTGGAGTAGCTATTACGTTCTTGAAAACTGGGGCAGGTGTGCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107215.9 |
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| CDS-3UTR CAA 90 bp | TCTGAGAAATCAAGAACATATTTAATCACATCGCACAAAAACCCTGGTATGAAGCTTGGTTTGGGAATCTaGACTTCAGTAGCTGCAGGT | + |
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Preference number: 5 (lower is better) Translates to: SEKSRTYLITSHKNPGMKLGLGI*TSVAAG Trigger: ACCTGCAGCTACTGAAGTCAAGATTCCCAAACCAAG...CTTCATACCAGGGTTTTTGTGCGATGTGATTAAATATGTTCTTGATTTCTCAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| CDS-3UTR CAA 90 bp | TCTGAGAAATCAAGAACATATTTAATCACATCGCACAAAAACCCTGGTATGAAGTCCTTCTCTAGCTTTTaGTTTGGCCCTTTCTTCCCC | + |
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Preference number: 5 (lower is better) Translates to: SEKSRTYLITSHKNPGMKSFSSF*FGPFFP Trigger: GGGGAAGAAAGGGCCAAACAAAAAGCTAGAGAAGGA...CTTCATACCAGGGTTTTTGTGCGATGTGATTAAATATGTTCTTGATTTCTCAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| CDS-3UTR CAA 90 bp | TCTGAGAAATCAAGAACATATTTAATCACATCGCACAAAAACCCTGGTATGAAGGGCTCTTCGTACCTGTaGGTTCCTTCTCTAGCTTTT | + |
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Preference number: 5 (lower is better) Translates to: SEKSRTYLITSHKNPGMKGSSYL*VPSLAF Trigger: AAAAGCTAGAGAAGGAACCAACAGGTACGAAGAGCC...CTTCATACCAGGGTTTTTGTGCGATGTGATTAAATATGTTCTTGATTTCTCAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| CDS-3UTR CAA 90 bp | TCTGAGAAATCAAGAACATATTTAATCACATCGCACAAAAACCCTGGTATGAAGTGTGTGTTTCTGAGCTaGCTGCATTGTTACCTGAAG | + |
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Preference number: 5 (lower is better) Translates to: SEKSRTYLITSHKNPGMKCVFLS*LHCYLK Trigger: CTTCAGGTAACAATGCAGCAAGCTCAGAAACACACA...CTTCATACCAGGGTTTTTGTGCGATGTGATTAAATATGTTCTTGATTTCTCAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| CDS-3UTR CAA 90 bp | TCTGAGAAATCAAGAACATATTTAATCACATCGCACAAAAACCCTGGTATGAAGTCTCTAGCTTTTTGTTaGGCCCTTTCTTCCCCTGAT | + |
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Preference number: 5 (lower is better) Translates to: SEKSRTYLITSHKNPGMKSLAFC*ALSSPD Trigger: ATCAGGGGAAGAAAGGGCCAAACAAAAAGCTAGAGA...CTTCATACCAGGGTTTTTGTGCGATGTGATTAAATATGTTCTTGATTTCTCAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| CDS-3UTR CAA 90 bp | TCTGAGAAATCAAGAACATATTTAATCACATCGCACAAAAACCCTGGTATGAAGACATCAGACGATGCATaGGATTGTTTAGTTGATGCC | + |
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Preference number: 5 (lower is better) Translates to: SEKSRTYLITSHKNPGMKTSDDA*DCLVDA Trigger: GGCATCAACTAAACAATCCAATGCATCGTCTGATGT...CTTCATACCAGGGTTTTTGTGCGATGTGATTAAATATGTTCTTGATTTCTCAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| CDS-3UTR CAA 90 bp | TCTGAGAAATCAAGAACATATTTAATCACATCGCACAAAAACCCTGGTATGAAGGAAGTCGAGAATCCATaGATGTTTCTCGCTTCTTCT | + |
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Preference number: 5 (lower is better) Translates to: SEKSRTYLITSHKNPGMKEVENP*MFLASS Trigger: AGAAGAAGCGAGAAACATCAATGGATTCTCGACTTC...CTTCATACCAGGGTTTTTGTGCGATGTGATTAAATATGTTCTTGATTTCTCAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| CDS-3UTR CAA 90 bp | TCTGAGAAATCAAGAACATATTTAATCACATCGCACAAAAACCCTGGTATGAAGTGGATGATTACTCTCTaGAGCATCAGATCCACCATT | + |
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Preference number: 5 (lower is better) Translates to: SEKSRTYLITSHKNPGMKWMITL*SIRSTI Trigger: AATGGTGGATCTGATGCTCAAGAGAGTAATCATCCA...CTTCATACCAGGGTTTTTGTGCGATGTGATTAAATATGTTCTTGATTTCTCAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| CDS GCA 72 bp | CAGCCTCTCTCTCTTCTCCAGGTGGCTTTGTCTTACTaGTGGCCTCGCGGCTGTCTTTGCCGTCTTCGTTAC | + |
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Preference number: 6 (lower is better) Translates to: QPLSLLQVALSY*WPRGCLCRLRY Trigger: GTAACGAAGACGGCAAAGACAGCCGCGAGGCCAGCAGTAAGACAAAGCCACCTGGAGAAGAGAGAGAGGCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030207.15 |
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| CDS TCA 72 bp | TTTACTTTTATCTTCATCAATAACCATGTCACCGTCTaGAGGACAAGGCTGCTTTACCACTTTAGGTCTGCC | + |
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Preference number: 6 (lower is better) Translates to: FTFIFINNHVTV*RTRLLYHFRSA Trigger: GGCAGACCTAAAGTGGTAAAGCAGCCTTGTCCTTCAGACGGTGACATGGTTATTGATGAAGATAAAAGTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030207.15 ENSMUST00000107214.9 ENSMUST00000107215.9 |
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