RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PSG28 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030373

Ensembl transcript IDs: ENSMUST00000019291.7

Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR GCA 90 bp TATGGGGGTAGGTATGGGCATCTGAATACAGAAATGCCCCCACCCTCCTATAGCGTTAGGAGAACCCTCTaGCAGGAGGTACACCCGTTG +
Preference number: 4 (lower is better)
Translates to: YGGRYGHLNTEMPPPSYSVRRTL*QEVHPL
Trigger: CAACGGGTGTACCTCCTGGCAGAGGGTTCTCCTAAC...GCTATAGGAGGGTGGGGGCATTTCTGTATTCAGATGCCCATACCTACCCCCATA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS-3UTR TCA 90 bp GTATGGTACAGAATGAAAGCATTTCTAAGAGGAAAACTCATAGCTCTGAGTGCCAGGACCAGGTTCCCTTaGTTTCTTGGCTCTTCTGTA +
Preference number: 4 (lower is better)
Translates to: VWYRMKAFLRGKLIALSARTRFP*FLGSSV
Trigger: TACAGAAGAGCCAAGAAATCAAGGGAACCTGGTCCT...GGCACTCAGAGCTATGAGTTTTCCTCTTAGAAATGCTTTCATTCTGTACCATAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS-3UTR GCA 90 bp CAAACTCAGGGCCAAAATCAACCTACTGGAAACAAAAAGAAGGGTAGAATAGCCTACCAGGAAAAGGTTTaGAGACCTTCTGGCAGATTA +
Preference number: 4 (lower is better)
Translates to: QTQGQNQPTGNKKKGRIAYQEKV*RPSGRL
Trigger: TAATCTGCCAGAAGGTCTGCAAACCTTTTCCTGGTA...GGCTATTCTACCCTTCTTTTTGTTTCCAGTAGGTTGATTTTGGCCCTGAGTTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS-3UTR CCA 90 bp ATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGTACATATACTAGTAGCTGGTCTCCTTCAACCACTTaGGGTGGAAAGGATTCAATG +
Preference number: 4 (lower is better)
Translates to: IALSASKKKLESTYTSSWSPSTT*GGKDSM
Trigger: CATTGAATCCTTTCCACCCCAAGTGGTTGAAGGAGA...CCAGCTACTAGTATATGTACTCTCTAGTTTCTTTTTGGAGGCACTCAGAGCTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS-3UTR CCA 90 bp AATCAAACTCAGGGCCAAAATCAACCTACTGGAAACAAAAAGAAGGGTAGAATATCCTGTGTGACATTTTaGATCCACAGGGACCCGTTG +
Preference number: 4 (lower is better)
Translates to: NQTQGQNQPTGNKKKGRISCVTF*IHRDPL
Trigger: CAACGGGTCCCTGTGGATCCAAAATGTCACACAGGA...TATTCTACCCTTCTTTTTGTTTCCAGTAGGTTGATTTTGGCCCTGAGTTTGATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS-3UTR CCA 90 bp CAGGATATAATCAAACTCAGGGCCAAAATCAACCTACTGGAAACAAAAAGAAGGTTCAACCACTTGGGGTaGAAAGGATTCAATGGTGAC +
Preference number: 4 (lower is better)
Translates to: QDIIKLRAKINLLETKRRFNHLG*KGFNGD
Trigger: GTCACCATTGAATCCTTTCCACCCCAAGTGGTTGAA...CCTTCTTTTTGTTTCCAGTAGGTTGATTTTGGCCCTGAGTTTGATTATATCCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS-3UTR CCA 90 bp AAAGCATTTCTAAGAGGAAAACTCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGGTTTGCAGACCTTCTaGCAGATTATAGACCTGGAG +
Preference number: 4 (lower is better)
Translates to: KAFLRGKLIALSASKKKLGLQTF*QIIDLE
Trigger: CTCCAGGTCTATAATCTGCCAGAAGGTCTGCAAACC...TAGTTTCTTTTTGGAGGCACTCAGAGCTATGAGTTTTCCTCTTAGAAATGCTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS-3UTR GCA 90 bp CAGGATATAATCAAACTCAGGGCCAAAATCAACCTACTGGAAACAAAAAGAAGGGTTGACTTGGACGTGTaGTGTTACAACTCTCATATT +
Preference number: 4 (lower is better)
Translates to: QDIIKLRAKINLLETKRRVDLDV*CYNSHI
Trigger: AATATGAGAGTTGTAACAGCACACGTCCAAGTCAAC...CCTTCTTTTTGTTTCCAGTAGGTTGATTTTGGCCCTGAGTTTGATTATATCCTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS TCA 90 bp GAACACTTCCCCCTTCAGCAGCGTGCTGTGGCACTGGATCAATGCTaGGTTGGGCAGAGTCAAGAGTGTCACAGCACAAGGAAAGGGAGG +
Preference number: 5 (lower is better)
Translates to: EHFPLQQRAVALDQC*VGQSQECHSTRKGR
Trigger: CCTCCCTTTCCTTGTGCTGTGACACTCTTGACTCTGCCCAACTCAGCATTGATCCAGTGCCACAGCACGCTGCTGAAGGGGGAAGTGTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS-3UTR CAA 90 bp TATGGGGGTAGGTATGGGCATCTGAATACAGAAATGCCCCCACCCTCCTATAGCCTCCTGTGTGACATTTaGGATCCACAGGGACCCGTT +
Preference number: 5 (lower is better)
Translates to: YGGRYGHLNTEMPPPSYSLLCDI*DPQGPV
Trigger: AACGGGTCCCTGTGGATCCAAAATGTCACACAGGAG...GCTATAGGAGGGTGGGGGCATTTCTGTATTCAGATGCCCATACCTACCCCCATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS GCA 90 bp GAGCAGCAGGGATCCATTGGTGTACCCTATCTCTCTTCTGCTGTGTaGACGGCCTCTGATGATGGACTTCGTTGCTATGCTATATTCTGC +
Preference number: 5 (lower is better)
Translates to: EQQGSIGVPYLSSAV*TASDDGLRCYAIFC
Trigger: GCAGAATATAGCATAGCAACGAAGTCCATCATCAGAGGCCGTGCACACAGCAGAAGAGAGATAGGGTACACCAATGGATCCCTGCTGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS TCA 90 bp TCCAGCATCCTCCTTCCTCACAGTATGTATCCTGAGTTGGCATTTTaGTGGGGACAGGGTCATCCTCTCTGTGAGCTGCAGATTCTGATT +
Preference number: 5 (lower is better)
Translates to: SSILLPHSMYPELAF*WGQGHPLCELQILI
Trigger: AATCAGAATCTGCAGCTCACAGAGAGGATGACCCTGTCCCCATCAAAATGCCAACTCAGGATACATACTGTGAGGAAGGAGGATGCTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS TCA 90 bp CATTTTGATGGGGACAGGGTCATCCTCTCTGTGAGCTGCAGATTCTaGTTGTTGAAGAGCCAACGGATGGAGATTCCAGTGTTGTATGAG +
Preference number: 5 (lower is better)
Translates to: HFDGDRVILSVSCRF*LLKSQRMEIPVLYE
Trigger: CTCATACAACACTGGAATCTCCATCCGTTGGCTCTTCAACAATCAGAATCTGCAGCTCACAGAGAGGATGACCCTGTCCCCATCAAAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS CCA 90 bp ATTGTTACTAGTGTGTACAATCCAGAGTCTTTCTCAGTGACATCCTaGAGCAGCAGGGATCCATTGGTGTACCCTATCTCTCTTCTGCTG +
Preference number: 5 (lower is better)
Translates to: IVTSVYNPESFSVTS*SSRDPLVYPISLLL
Trigger: CAGCAGAAGAGAGATAGGGTACACCAATGGATCCCTGCTGCTCCAGGATGTCACTGAGAAAGACTCTGGATTGTACACACTAGTAACAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS GCA 90 bp GTGTGCACGGCCTCTGATGATGGACTTCGTTGCTATGCTATATTCTaGAATTTTAAAGTCCTGAGTGCTAAGCACACCTTTGTACCAGGA +
Preference number: 5 (lower is better)
Translates to: VCTASDDGLRCYAIF*NFKVLSAKHTFVPG
Trigger: TCCTGGTACAAAGGTGTGCTTAGCACTCAGGACTTTAAAATTGCAGAATATAGCATAGCAACGAAGTCCATCATCAGAGGCCGTGCACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS-3UTR CAA 90 bp CAAACTCAGGGCCAAAATCAACCTACTGGAAACAAAAAGAAGGGTAGAATAGCCGGTTCCCTTGATTTCTaGGCTCTTCTGTATCGAGCA +
Preference number: 5 (lower is better)
Translates to: QTQGQNQPTGNKKKGRIAGSLDF*ALLYRA
Trigger: TGCTCGATACAGAAGAGCCAAGAAATCAAGGGAACC...GGCTATTCTACCCTTCTTTTTGTTTCCAGTAGGTTGATTTTGGCCCTGAGTTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS-3UTR CAA 90 bp GTATGGTACAGAATGAAAGCATTTCTAAGAGGAAAACTCATAGCTCTGAGTGCCTGGATCAATGCTGAGTaGGGCAGAGTCAAGAGTGTC +
Preference number: 5 (lower is better)
Translates to: VWYRMKAFLRGKLIALSAWINAE*GRVKSV
Trigger: GACACTCTTGACTCTGCCCAACTCAGCATTGATCCA...GGCACTCAGAGCTATGAGTTTTCCTCTTAGAAATGCTTTCATTCTGTACCATAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS-3UTR CAA 90 bp CCCAAAGTATGGTACAGAATGAAAGCATTTCTAAGAGGAAAACTCATAGCTCTGCAGGACCAGGTTCCCTaGATTTCTTGGCTCTTCTGT +
Preference number: 5 (lower is better)
Translates to: PKVWYRMKAFLRGKLIALQDQVP*ISWLFC
Trigger: ACAGAAGAGCCAAGAAATCAAGGGAACCTGGTCCTG...CAGAGCTATGAGTTTTCCTCTTAGAAATGCTTTCATTCTGTACCATACTTTGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS-3UTR CAA 90 bp AAAGCATTTCTAAGAGGAAAACTCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGTGCTAAGCACACCTTaGTACCAGGAAAAGGTTTGC +
Preference number: 5 (lower is better)
Translates to: KAFLRGKLIALSASKKKLVLSTP*YQEKVC
Trigger: GCAAACCTTTTCCTGGTACAAAGGTGTGCTTAGCAC...TAGTTTCTTTTTGGAGGCACTCAGAGCTATGAGTTTTCCTCTTAGAAATGCTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS-3UTR CAA 90 bp GTATGGTACAGAATGAAAGCATTTCTAAGAGGAAAACTCATAGCTCTGAGTGCCATGGAGATTCCAGTGTaGTATGAGAAGCAAGTGAAG +
Preference number: 5 (lower is better)
Translates to: VWYRMKAFLRGKLIALSAMEIPV*YEKQVK
Trigger: CTTCACTTGCTTCTCATACAACACTGGAATCTCCAT...GGCACTCAGAGCTATGAGTTTTCCTCTTAGAAATGCTTTCATTCTGTACCATAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS-3UTR CAA 90 bp CAGGATATAATCAAACTCAGGGCCAAAATCAACCTACTGGAAACAAAAAGAAGGCGAGCAATCTCAACCTaGTTAAATACAATCAGCCCT +
Preference number: 5 (lower is better)
Translates to: QDIIKLRAKINLLETKRRRAIST*LNTISP
Trigger: AGGGCTGATTGTATTTAACAAGGTTGAGATTGCTCG...CCTTCTTTTTGTTTCCAGTAGGTTGATTTTGGCCCTGAGTTTGATTATATCCTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS-3UTR CAA 90 bp CAGAATGAAAGCATTTCTAAGAGGAAAACTCATAGCTCTGAGTGCCTCCAAAAAAGTACAGGGATGTATTaGATACCATTTCTCCTTGTT +
Preference number: 5 (lower is better)
Translates to: QNESISKRKTHSSECLQKSTGMY*IPFLLV
Trigger: AACAAGGAGAAATGGTATCAAATACATCCCTGTACT...TTTTTGGAGGCACTCAGAGCTATGAGTTTTCCTCTTAGAAATGCTTTCATTCTG
38% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS TCA 90 bp ACAGATGAAAAGAGAGGAGTACACGTGCAAGTACAGGGATGTATTTaGTACCATTTCTCCTTGTTTACTTATGGTTTGAAAGGTGTAATA +
Preference number: 5 (lower is better)
Translates to: TDEKRGVHVQVQGCI*YHFSLFTYGLKGVI
Trigger: TATTACACCTTTCAAACCATAAGTAAACAAGGAGAAATGGTATCAAATACATCCCTGTACTTGCACGTGTACTCCTCTCTTTTCATCTGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS CCA 72 bp CTGGAGAAGAACACTTCCCCCTTCAGCAGCGTGCTGTaGCACTGGATCAATGCTGAGTTGGGCAGAGTCAAG +
Preference number: 6 (lower is better)
Translates to: LEKNTSPFSSVL*HWINAELGRVK
Trigger: CTTGACTCTGCCCAACTCAGCATTGATCCAGTGCCACAGCACGCTGCTGAAGGGGGAAGTGTTCTTCTCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS CCA 72 bp TCAGCAGCGTGCTGTGGCACTGGATCAATGCTGAGTTaGGCAGAGTCAAGAGTGTCACAGCACAAGGAAAGG +
Preference number: 6 (lower is better)
Translates to: SAACCGTGSMLS*AESRVSQHKER
Trigger: CCTTTCCTTGTGCTGTGACACTCTTGACTCTGCCCAACTCAGCATTGATCCAGTGCCACAGCACGCTGCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS CCA 72 bp AAGAACACTTCCCCCTTCAGCAGCGTGCTGTGGCACTaGATCAATGCTGAGTTGGGCAGAGTCAAGAGTGTC +
Preference number: 6 (lower is better)
Translates to: KNTSPFSSVLWH*INAELGRVKSV
Trigger: GACACTCTTGACTCTGCCCAACTCAGCATTGATCCAGTGCCACAGCACGCTGCTGAAGGGGGAAGTGTTCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS TCA 72 bp GGGGACAGGGTCATCCTCTCTGTGAGCTGCAGATTCTaGTTGTTGAAGAGCCAACGGATGGAGATTCCAGTG +
Preference number: 6 (lower is better)
Translates to: GDRVILSVSCRF*LLKSQRMEIPV
Trigger: CACTGGAATCTCCATCCGTTGGCTCTTCAACAATCAGAATCTGCAGCTCACAGAGAGGATGACCCTGTCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS CAA 72 bp TTCAGCAGCGTGCTGTGGCACTGGATCAATGCTGAGTaGGGCAGAGTCAAGAGTGTCACAGCACAAGGAAAG +
Preference number: 6 (lower is better)
Translates to: FSSVLWHWINAE*GRVKSVTAQGK
Trigger: CTTTCCTTGTGCTGTGACACTCTTGACTCTGCCCAACTCAGCATTGATCCAGTGCCACAGCACGCTGCTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS CAA 72 bp TCTTTCTCAGTGACATCCTGGAGCAGCAGGGATCCATaGGTGTACCCTATCTCTCTTCTGCTGTGTGCACGG +
Preference number: 6 (lower is better)
Translates to: SFSVTSWSSRDP*VYPISLLLCAR
Trigger: CCGTGCACACAGCAGAAGAGAGATAGGGTACACCAATGGATCCCTGCTGCTCCAGGATGTCACTGAGAAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS CAA 90 bp TATCCTGTGTCCTCCTGTGTGACATTTTGGATCCACAGGGACCCGTaGATGTATAATGTCTCTCTGCCGCTGTGCTTCAGCCCCTTCGCT +
Preference number: 6 (lower is better)
Translates to: YPVSSCVTFWIHRDP*MYNVSLPLCFSPFA
Trigger: AGCGAAGGGGCTGAAGCACAGCGGCAGAGAGACATTATACATCAACGGGTCCCTGTGGATCCAAAATGTCACACAGGAGGACACAGGATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS CAA 90 bp AATCCAGAGTCTTTCTCAGTGACATCCTGGAGCAGCAGGGATCCATaGGTGTACCCTATCTCTCTTCTGCTGTGTGCACGGCCTCTGATG +
Preference number: 6 (lower is better)
Translates to: NPESFSVTSWSSRDP*VYPISLLLCARPLM
Trigger: CATCAGAGGCCGTGCACACAGCAGAAGAGAGATAGGGTACACCAATGGATCCCTGCTGCTCCAGGATGTCACTGAGAAAGACTCTGGATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS CAA 72 bp TCCTCCTGTGTGACATTTTGGATCCACAGGGACCCGTaGATGTATAATGTCTCTCTGCCGCTGTGCTTCAGC +
Preference number: 6 (lower is better)
Translates to: SSCVTFWIHRDP*MYNVSLPLCFS
Trigger: GCTGAAGCACAGCGGCAGAGAGACATTATACATCAACGGGTCCCTGTGGATCCAAAATGTCACACAGGAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS CAA 72 bp CTGTCCGTGACTCTCATGGCAGGCTGTGTCACAAGCTaGTGGATGTTGACTTGGACGTGTGCTGTTACAACT +
Preference number: 6 (lower is better)
Translates to: LSVTLMAGCVTS*WMLTWTCAVTT
Trigger: AGTTGTAACAGCACACGTCCAAGTCAACATCCACAAGCTTGTGACACAGCCTGCCATGAGAGTCACGGACAG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS TCA 72 bp TGTCTCTCTACCACTGTGGGCAGGACCAGGTTCCCTTaGTTTCTTGGCTCTTCTGTATCGAGCAATCTCAAC +
Preference number: 6 (lower is better)
Translates to: CLSTTVGRTRFP*FLGSSVSSNLN
Trigger: GTTGAGATTGCTCGATACAGAAGAGCCAAGAAATCAAGGGAACCTGGTCCTGCCCACAGTGGTAGAGAGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS CAA 72 bp CTGTCTCTCTACCACTGTGGGCAGGACCAGGTTCCCTaGATTTCTTGGCTCTTCTGTATCGAGCAATCTCAA +
Preference number: 6 (lower is better)
Translates to: LSLYHCGQDQVP*ISWLFCIEQSQ
Trigger: TTGAGATTGCTCGATACAGAAGAGCCAAGAAATCAAGGGAACCTGGTCCTGCCCACAGTGGTAGAGAGACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS CCA 72 bp AGTGTGTACAATCCAGAGTCTTTCTCAGTGACATCCTaGAGCAGCAGGGATCCATTGGTGTACCCTATCTCT +
Preference number: 6 (lower is better)
Translates to: SVYNPESFSVTS*SSRDPLVYPIS
Trigger: AGAGATAGGGTACACCAATGGATCCCTGCTGCTCCAGGATGTCACTGAGAAAGACTCTGGATTGTACACACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS CAA 72 bp CTACCACTGTGGGCAGGACCAGGTTCCCTTGATTTCTaGGCTCTTCTGTATCGAGCAATCTCAACCTTGTTA +
Preference number: 6 (lower is better)
Translates to: LPLWAGPGSLDF*ALLYRAISTLL
Trigger: TAACAAGGTTGAGATTGCTCGATACAGAAGAGCCAAGAAATCAAGGGAACCTGGTCCTGCCCACAGTGGTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS CAA 90 bp ACTGTCTCTCTACCACTGTGGGCAGGACCAGGTTCCCTTGATTTCTaGGCTCTTCTGTATCGAGCAATCTCAACCTTGTTAAATACAATC +
Preference number: 6 (lower is better)
Translates to: TVSLPLWAGPGSLDF*ALLYRAISTLLNTI
Trigger: GATTGTATTTAACAAGGTTGAGATTGCTCGATACAGAAGAGCCAAGAAATCAAGGGAACCTGGTCCTGCCCACAGTGGTAGAGAGACAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS CAA 90 bp CGCTGTGCTTCAGCCCCTTCGCTGTTAAACTATAGTACAGTGCAATaGCATGTCTCAAATTTGTCATTCCTCTGTACCAGCCAAACACTA +
Preference number: 6 (lower is better)
Translates to: RCASAPSLLNYSTVQ*HVSNLSFLCTSQTL
Trigger: TAGTGTTTGGCTGGTACAGAGGAATGACAAATTTGAGACATGCAATTGCACTGTACTATAGTTTAACAGCGAAGGGGCTGAAGCACAGCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS GCA 72 bp GTAGATCGCCCACAGATGAAAAGAGAGGAGTACACGTaGAAGTACAGGGATGTATTTGATACCATTTCTCCT +
Preference number: 6 (lower is better)
Translates to: VDRPQMKREEYT*KYRDVFDTISP
Trigger: AGGAGAAATGGTATCAAATACATCCCTGTACTTGCACGTGTACTCCTCTCTTTTCATCTGTGGGCGATCTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS GCA 72 bp CTGTGTCACAAGCTTGTGGATGTTGACTTGGACGTGTaGTGTTACAACTCTCATATTGCTGTCTATTGTTAC +
Preference number: 6 (lower is better)
Translates to: LCHKLVDVDLDV*CYNSHIAVYCY
Trigger: GTAACAATAGACAGCAATATGAGAGTTGTAACAGCACACGTCCAAGTCAACATCCACAAGCTTGTGACACAG
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS CAA 72 bp TCAGCCCCTTCGCTGTTAAACTATAGTACAGTGCAATaGCATGTCTCAAATTTGTCATTCCTCTGTACCAGC +
Preference number: 6 (lower is better)
Translates to: SAPSLLNYSTVQ*HVSNLSFLCTS
Trigger: GCTGGTACAGAGGAATGACAAATTTGAGACATGCAATTGCACTGTACTATAGTTTAACAGCGAAGGGGCTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS TCA 72 bp TTCGTTGCTATGCTATATTCTGCAATTTTAAAGTCCTaGGTGCTAAGCACACCTTTGTACCAGGAAAAGGTT +
Preference number: 6 (lower is better)
Translates to: FVAMLYSAILKS*VLSTPLYQEKV
Trigger: AACCTTTTCCTGGTACAAAGGTGTGCTTAGCACTCAGGACTTTAAAATTGCAGAATATAGCATAGCAACGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS CAA 72 bp GATTTCTTGGCTCTTCTGTATCGAGCAATCTCAACCTaGTTAAATACAATCAGCCCTTTGTACCAGAAAAGT +
Preference number: 6 (lower is better)
Translates to: DFLALLYRAIST*LNTISPLYQKS
Trigger: ACTTTTCTGGTACAAAGGGCTGATTGTATTTAACAAGGTTGAGATTGCTCGATACAGAAGAGCCAAGAAATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS CAA 72 bp AAAGAGAGGAGTACACGTGCAAGTACAGGGATGTATTaGATACCATTTCTCCTTGTTTACTTATGGTTTGAA +
Preference number: 6 (lower is better)
Translates to: KERSTRASTGMY*IPFLLVYLWFE
Trigger: TTCAAACCATAAGTAAACAAGGAGAAATGGTATCAAATACATCCCTGTACTTGCACGTGTACTCCTCTCTTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7
CDS CAA 72 bp TTAAACTATAGTACAGTGCAATTGCATGTCTCAAATTaGTCATTCCTCTGTACCAGCCAAACACTAGAAGAT +
Preference number: 6 (lower is better)
Translates to: LNYSTVQLHVSN*SFLCTSQTLED
Trigger: ATCTTCTAGTGTTTGGCTGGTACAGAGGAATGACAAATTTGAGACATGCAATTGCACTGTACTATAGTTTAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019291.7