RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PSG23 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000074359

Ensembl transcript IDs: ENSMUST00000057810.7

Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAATGTGGGGGCGGCTCCCAACATGGAGGGGTTCAGGATCAGGTATaGGGAAGGATAGGAGACATGGCCAACTGTCCATGGGAAAGAATG +
Preference number: 1 (lower is better)
Translates to: ECGGGSQHGGVQDQV*GRIGDMANCPWERM
Trigger: CATTCTTTCCCATGGACAGTTGGCCATGTCTCCTATCCTTCCCCATACCTGATCCTGAACCCCTCCATGTTGGGAGCCGCCCCCACATTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
3UTR-3UTR CCA 90 bp GGCGGCTCCCAACATGGAGGGGTTCAGGATCAGGTATGGGGAAGGATAGGAGACGTCCATGGGAAAGAATaGAAATCTGTAACTGGCAGG +
Preference number: 2 (lower is better)
Translates to: GGSQHGGVQDQVWGRIGDVHGKE*KSVTGR
Trigger: CCTGCCAGTTACAGATTTCCATTCTTTCCCATGGAC...GTCTCCTATCCTTCCCCATACCTGATCCTGAACCCCTCCATGTTGGGAGCCGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
3UTR-3UTR GCA 90 bp TCCCAACATGGAGGGGTTCAGGATCAGGTATGGGGAAGGATAGGAGACATGGCCATCTCAATACAGAAATaGCTCTGCCCTGCTATAGTA +
Preference number: 2 (lower is better)
Translates to: SQHGGVQDQVWGRIGDMAISIQK*LCPAIV
Trigger: TACTATAGCAGGGCAGAGGCATTTCTGTATTGAGAT...GGCCATGTCTCCTATCCTTCCCCATACCTGATCCTGAACCCCTCCATGTTGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
3UTR TCA 72 bp GGAGGAGTTATCCTTCGCTTAGGACGCATCACTCCCTaGTTGGCTGCAGCCCATGGCCGAGCTGACGTCACG +
Preference number: 3 (lower is better)
Translates to: GGVILRLGRITP*LAAAHGRADVT
Trigger: CGTGACGTCAGCTCGGCCATGGGCTGCAGCCAATCAGGGAGTGATGCGTCCTAAGCGAAGGATAACTCCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
3UTR CCA 72 bp GGCGGCTCCCAACATGGAGGGGTTCAGGATCAGGTATaGGGAAGGATAGGAGACATGGCCAACTGTCCATGG +
Preference number: 3 (lower is better)
Translates to: GGSQHGGVQDQV*GRIGDMANCPW
Trigger: CCATGGACAGTTGGCCATGTCTCCTATCCTTCCCCATACCTGATCCTGAACCCCTCCATGTTGGGAGCCGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
3UTR TCA 72 bp TTACCACTTAGAACACAGGATGTCAGCGCCATCTTGTaGCGGCGAATGTGGGGGCGGCTCCCAACATGGAGG +
Preference number: 3 (lower is better)
Translates to: LPLRTQDVSAIL*RRMWGRLPTWR
Trigger: CCTCCATGTTGGGAGCCGCCCCCACATTCGCCGTCACAAGATGGCGCTGACATCCTGTGTTCTAAGTGGTAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS-3UTR TCA 90 bp CAAGCGAGCAGGCGCCAGAGCCAGAGAGAGAATGGCGGAAACCCCGTCCCCTTTCTGTGTCCTCCTGTGTaGCATTTTGGATCCATAGGG +
Preference number: 4 (lower is better)
Translates to: QASRRQSQRENGGNPVPFLCPPV*HFGSIG
Trigger: CCCTATGGATCCAAAATGTCACACAGGAGGACACAG...AAAGGGGACGGGGTTTCCGCCATTCTCTCTCTGGCTCTGGCGCCTGCTCGCTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS-3UTR TCA 90 bp CAAGCGAGCAGGCGCCAGAGCCAGAGAGAGAATGGCGGAAACCCCGTCCCCTTTGTATGTATCCTGAGTTaGCACTTTGACGGGGACAGG +
Preference number: 4 (lower is better)
Translates to: QASRRQSQRENGGNPVPFVCILS*HFDGDR
Trigger: CCTGTCCCCGTCAAAGTGTCAACTCAGGATACATAC...AAAGGGGACGGGGTTTCCGCCATTCTCTCTCTGGCTCTGGCGCCTGCTCGCTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
3UTR CAA 72 bp GCCAGAGCGCGCCAGAGCGCCAGAGCAAGAGCTCTATaGTTTACATCTTTAGGAGCAAGCGAGCAGGCGCCA +
Preference number: 4 (lower is better)
Translates to: ARARQSARARAL*FTSLGASEQAP
Trigger: TGGCGCCTGCTCGCTTGCTCCTAAAGATGTAAACAATAGAGCTCTTGCTCTGGCGCTCTGGCGCGCTCTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS-3UTR TCA 90 bp AGCAGGCGCCAGAGCCAGAGAGAGAATGGCGGAAACCCCGTCCCCTTTAAGGAGGCAGACTCTGCTTATTaGAGAGCCAACGGATGGAGA +
Preference number: 4 (lower is better)
Translates to: SRRQSQRENGGNPVPFKEADSAY*RANGWR
Trigger: TCTCCATCCGTTGGCTCTTCAATAAGCAGAGTCTGC...CTCCTTAAAGGGGACGGGGTTTCCGCCATTCTCTCTCTGGCTCTGGCGCCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS-3UTR TCA 90 bp GCCAGAGCCAGAGAGAGAATGGCGGAAACCCCGTCCCCTTTAAGGAGGAGTTATAACGCTGGGCGGCACTaGTTCAATAGTGAGCTTGGC +
Preference number: 4 (lower is better)
Translates to: ARARERMAETPSPLRRSYNAGRH*FNSELG
Trigger: GCCAAGCTCACTATTGAATCAGTGCCGCCCAGCGTT...ATAACTCCTCCTTAAAGGGGACGGGGTTTCCGCCATTCTCTCTCTGGCTCTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS-3UTR GCA 90 bp AGCAGGCGCCAGAGCCAGAGAGAGAATGGCGGAAACCCCGTCCCCTTTAAGGAGGCAGCAGGGATCCATTaGTGTACACTATCTCTCTAC +
Preference number: 4 (lower is better)
Translates to: SRRQSQRENGGNPVPFKEAAGIH*CTLSLY
Trigger: GTAGAGAGATAGTGTACAGCAATGGATCCCTGCTGC...CTCCTTAAAGGGGACGGGGTTTCCGCCATTCTCTCTCTGGCTCTGGCGCCTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS-3UTR GCA 90 bp GGCGGCTCCCAACATGGAGGGGTTCAGGATCAGGTATGGGGAAGGATAGGAGACGTGAGCTGCAGACTCTaGTTATTGAAGAGCCAACGG +
Preference number: 4 (lower is better)
Translates to: GGSQHGGVQDQVWGRIGDVSCRL*LLKSQR
Trigger: CCGTTGGCTCTTCAATAAGCAGAGTCTGCAGCTCAC...GTCTCCTATCCTTCCCCATACCTGATCCTGAACCCCTCCATGTTGGGAGCCGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS-3UTR CCA 90 bp AGCAGGCGCCAGAGCCAGAGAGAGAATGGCGGAAACCCCGTCCCCTTTAAGGAGTTCTCAGTGACATCCTaGAGCAGCAGGGATCCATTA +
Preference number: 4 (lower is better)
Translates to: SRRQSQRENGGNPVPFKEFSVTS*SSRDPL
Trigger: TAATGGATCCCTGCTGCTCCAGGATGTCACTGAGAA...CTCCTTAAAGGGGACGGGGTTTCCGCCATTCTCTCTCTGGCTCTGGCGCCTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS-3UTR TCA 90 bp CGAGCAGGCGCCAGAGCCAGAGAGAGAATGGCGGAAACCCCGTCCCCTTTAAGGGATCGCTTAAATTCTTaGGTGTTCTGTACCGGACAA +
Preference number: 4 (lower is better)
Translates to: RAGARARERMAETPSPLRDRLNS*VFCTGQ
Trigger: TTGTCCGGTACAGAACACTCAAGAATTTAAGCGATC...CCTTAAAGGGGACGGGGTTTCCGCCATTCTCTCTCTGGCTCTGGCGCCTGCTCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS-3UTR TCA 90 bp GGCTCCCAACATGGAGGGGTTCAGGATCAGGTATGGGGAAGGATAGGAGACATGTTTCCGAGACTCTCATaGCAGGCTGTGTCACAAGCT +
Preference number: 4 (lower is better)
Translates to: GSQHGGVQDQVWGRIGDMFPRLS*QAVSQA
Trigger: AGCTTGTGACACAGCCTGTCATGAGAGTCTCGGAAA...CATGTCTCCTATCCTTCCCCATACCTGATCCTGAACCCCTCCATGTTGGGAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS-3UTR CCA 90 bp CAAGCGAGCAGGCGCCAGAGCCAGAGAGAGAATGGCGGAAACCCCGTCCCCTTTTACAATTTGAAAGGATaGAGTGCTATCCACACCCTT +
Preference number: 4 (lower is better)
Translates to: QASRRQSQRENGGNPVPFYNLKG*SAIHTL
Trigger: AAGGGTGTGGATAGCACTCCATCCTTTCAAATTGTA...AAAGGGGACGGGGTTTCCGCCATTCTCTCTCTGGCTCTGGCGCCTGCTCGCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS-3UTR TCA 90 bp GGCTCCCAACATGGAGGGGTTCAGGATCAGGTATGGGGAAGGATAGGAGACATGTACTCTGGAAGATTGTaGACACGGAGAAGAACGCTT +
Preference number: 4 (lower is better)
Translates to: GSQHGGVQDQVWGRIGDMYSGRL*TRRRTL
Trigger: AAGCGTTCTTCTCCGTGTTCACAATCTTCCAGAGTA...CATGTCTCCTATCCTTCCCCATACCTGATCCTGAACCCCTCCATGTTGGGAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS-3UTR CCA 90 bp CGAGCAGGCGCCAGAGCCAGAGAGAGAATGGCGGAAACCCCGTCCCCTTTAAGGAGACCTGAAGAAATGTaGATGTATTTGATTCCAGTT +
Preference number: 4 (lower is better)
Translates to: RAGARARERMAETPSPLRRPEEM*MYLIPV
Trigger: AACTGGAATCAAATACATCCACATTTCTTCAGGTCT...CCTTAAAGGGGACGGGGTTTCCGCCATTCTCTCTCTGGCTCTGGCGCCTGCTCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS-3UTR CCA 90 bp GGCTCCCAACATGGAGGGGTTCAGGATCAGGTATGGGGAAGGATAGGAGACATGGGTAGATTATGGACCTaGAGAAGAACACTTTCCCCT +
Preference number: 4 (lower is better)
Translates to: GSQHGGVQDQVWGRIGDMGRLWT*RRTLSP
Trigger: AGGGGAAAGTGTTCTTCTCCAGGTCCATAATCTACC...CATGTCTCCTATCCTTCCCCATACCTGATCCTGAACCCCTCCATGTTGGGAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS-3UTR TCA 90 bp ATACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGGATGTCTCAAGAGGGAGGCTGTaGACAGGACCCTCTGCCAAG +
Preference number: 4 (lower is better)
Translates to: IPLAHAQIICLPLRTQDVSRGRL*TGPSAK
Trigger: CTTGGCAGAGGGTCCTGTTCACAGCCTCCCTCTTGA...GACATCCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGGTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS-3UTR CCA 90 bp GGGCGGCTCCCAACATGGAGGGGTTCAGGATCAGGTATGGGGAAGGATAGGAGACTCCATGGTTACTTATaGTTTGAAGAGTGTAATATC +
Preference number: 4 (lower is better)
Translates to: GRLPTWRGSGSGMGKDRRLHGYL*FEECNI
Trigger: GATATTACACTCTTCAAACCATAAGTAACCATGGAG...TCTCCTATCCTTCCCCATACCTGATCCTGAACCCCTCCATGTTGGGAGCCGCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS-3UTR CCA 90 bp GGTAGGTGTGGACATCTCAATACAGAAATGCCTCTGCCCTGCTATAGTATGAGAGGATCGATCCTGAGTTaGGCAGAGTCAAGAGGGTCA +
Preference number: 4 (lower is better)
Translates to: GRCGHLNTEMPLPCYSMRGSILS*AESRGS
Trigger: TGACCCTCTTGACTCTGCCCAACTCAGGATCGATCC...TCTCATACTATAGCAGGGCAGAGGCATTTCTGTATTGAGATGTCCACACCTACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS-3UTR TCA 90 bp TCCCAACATGGAGGGGTTCAGGATCAGGTATGGGGAAGGATAGGAGACATGGCCAAATGTGGATGTATTTaGTTCCAGTTCTCCATGGTT +
Preference number: 4 (lower is better)
Translates to: SQHGGVQDQVWGRIGDMAKCGCI*FQFSMV
Trigger: AACCATGGAGAACTGGAATCAAATACATCCACATTT...GGCCATGTCTCCTATCCTTCCCCATACCTGATCCTGAACCCCTCCATGTTGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS-3UTR TCA 90 bp ATACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGGATGTCTTGAAGGCCTCACATTaGTACTCTCCACCATCCTCC +
Preference number: 4 (lower is better)
Translates to: IPLAHAQIICLPLRTQDVLKASH*YSPPSS
Trigger: GGAGGATGGTGGAGAGTATCAATGTGAGGCCTTCAA...GACATCCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGGTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS-3UTR GCA 90 bp ATACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGGATGTCATCCTCTCTGTGAGCTaGAGACTCTGCTTATTGAAG +
Preference number: 4 (lower is better)
Translates to: IPLAHAQIICLPLRTQDVILSVS*RLCLLK
Trigger: CTTCAATAAGCAGAGTCTGCAGCTCACAGAGAGGAT...GACATCCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGGTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS-3UTR CCA 90 bp AAATACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGGATGTCTTCTGGTAGATTATaGACCTGGAGAAGAACACTT +
Preference number: 4 (lower is better)
Translates to: KYPWHMRRLFVYHLEHRMSSGRL*TWRRTL
Trigger: AAGTGTTCTTCTCCAGGTCCATAATCTACCAGAAGA...CATCCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGGTATTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS-3UTR CAA 90 bp AGCAAGCGAGCAGGCGCCAGAGCCAGAGAGAGAATGGCGGAAACCCCGTCCCCTGTTGAAGGCCTCACATaGATACTCTCCACCATCCTC +
Preference number: 5 (lower is better)
Translates to: SKRAGARARERMAETPSPVEGLT*ILSTIL
Trigger: GAGGATGGTGGAGAGTATCAATGTGAGGCCTTCAAC...AGGGGACGGGGTTTCCGCCATTCTCTCTCTGGCTCTGGCGCCTGCTCGCTTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS TCA 90 bp AACACGGAGAAGAACGCTTCCTCCTTCAGCAACGCTGGGCGGCACTaGTTCAATAGTGAGCTTGGCAGGGAAGGAAGGACGCCCACAGGT +
Preference number: 5 (lower is better)
Translates to: NTEKNASSFSNAGRH*FNSELGREGRTPTG
Trigger: ACCTGTGGGCGTCCTTCCTTCCCTGCCAAGCTCACTATTGAATCAGTGCCGCCCAGCGTTGCTGAAGGAGGAAGCGTTCTTCTCCGTGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS GCA 90 bp CACTTTGACGGGGACAGGCTCATCCTCTCTGTGAGCTGCAGACTCTaGTTATTGAAGAGCCAACGGATGGAGACCCCAGTGTTGTCTGAG +
Preference number: 5 (lower is better)
Translates to: HFDGDRLILSVSCRL*LLKSQRMETPVLSE
Trigger: CTCAGACAACACTGGGGTCTCCATCCGTTGGCTCTTCAATAAGCAGAGTCTGCAGCTCACAGAGAGGATGAGCCTGTCCCCGTCAAAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS TCA 90 bp TCCACCATCCTCCTTCCTCACAGTATGTATCCTGAGTTGACACTTTaGCGGGGACAGGCTCATCCTCTCTGTGAGCTGCAGACTCTGCTT +
Preference number: 5 (lower is better)
Translates to: STILLPHSMYPELTL*RGQAHPLCELQTLL
Trigger: AAGCAGAGTCTGCAGCTCACAGAGAGGATGAGCCTGTCCCCGTCAAAGTGTCAACTCAGGATACATACTGTGAGGAAGGAGGATGGTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS-3UTR CAA 90 bp CTGGCAGGGGTAGGTAGGTGTGGACATCTCAATACAGAAATGCCTCTGCCCTGCGGATCGCTTAAATTCTaGAGTGTTCTGTACCGGACA +
Preference number: 5 (lower is better)
Translates to: LAGVGRCGHLNTEMPLPCGSLKF*SVLYRT
Trigger: TGTCCGGTACAGAACACTCAAGAATTTAAGCGATCC...GCAGGGCAGAGGCATTTCTGTATTGAGATGTCCACACCTACCTACCCCTGCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS TCA 90 bp ACTGGGAGACTGGTCTTAGAGTTGGCTGGGTTGAAGGCCTCACATTaGTACTCTCCACCATCCTCCTTCCTCACAGTATGTATCCTGAGT +
Preference number: 5 (lower is better)
Translates to: TGRLVLELAGLKASH*YSPPSSFLTVCILS
Trigger: ACTCAGGATACATACTGTGAGGAAGGAGGATGGTGGAGAGTATCAATGTGAGGCCTTCAACCCAGCCAACTCTAAGACCAGTCTCCCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS GCA 90 bp GAGCAGCAGGGATCCATTAGTGTACCCTATCTCTCTTCGGCTGTATaGACTGCCGCTGATGATGGACTTCATTGCTTTGCTATATTCTAC +
Preference number: 5 (lower is better)
Translates to: EQQGSISVPYLSSAV*TAADDGLHCFAIFY
Trigger: GTAGAATATAGCAAAGCAATGAAGTCCATCATCAGCGGCAGTGCATACAGCCGAAGAGAGATAGGGTACACTAATGGATCCCTGCTGCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS TCA 90 bp GCCCTGTCATACTTGTGCTATAGTCCAGTAAATACACAGCAATTGTaGGCCTCCAATTTGTCAGTCCTCTGTACCAGGCAAAAGCTAGAA +
Preference number: 5 (lower is better)
Translates to: ALSYLCYSPVNTQQL*ASNLSVLCTRQKLE
Trigger: TTCTAGCTTTTGCCTGGTACAGAGGACTGACAAATTGGAGGCTCACAATTGCTGTGTATTTACTGGACTATAGCACAAGTATGACAGGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS TCA 90 bp GGTTACTTATGGTTTGAAGAGTGTAATATCCTGTGTCCTCCTGTGTaGCATTTTGGATCCATAGGGACCCGTTGCTGTACAATATCTCTC +
Preference number: 5 (lower is better)
Translates to: GYLWFEECNILCPPV*HFGSIGTRCCTISL
Trigger: GAGAGATATTGTACAGCAACGGGTCCCTATGGATCCAAAATGTCACACAGGAGGACACAGGATATTACACTCTTCAAACCATAAGTAACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS-3UTR CAA 90 bp ATACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGGATGTCGAAATGTGGATGTATTaGATTCCAGTTCTCCATGGT +
Preference number: 5 (lower is better)
Translates to: IPLAHAQIICLPLRTQDVEMWMY*IPVLHG
Trigger: ACCATGGAGAACTGGAATCAAATACATCCACATTTC...GACATCCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGGTAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS TCA 90 bp ACAGGTGAAATGAGACGAGTAGACCTGAAGAAATGTGGATGTATTTaGTTCCAGTTCTCCATGGTTACTTATGGTTTGAAGAGTGTAATA +
Preference number: 5 (lower is better)
Translates to: TGEMRRVDLKKCGCI*FQFSMVTYGLKSVI
Trigger: TATTACACTCTTCAAACCATAAGTAACCATGGAGAACTGGAATCAAATACATCCACATTTCTTCAGGTCTACTCGTCTCATTTCACCTGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS CCA 72 bp TCAGCAGCATGCGGAGTCACTGGATCGATCCTGAGTTaGGCAGAGTCAAGAGGGTCACAGCACGGGGTGTCC +
Preference number: 6 (lower is better)
Translates to: SAACGVTGSILS*AESRGSQHGVS
Trigger: GGACACCCCGTGCTGTGACCCTCTTGACTCTGCCCAACTCAGGATCGATCCAGTGACTCCGCATGCTGCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS GCA 72 bp GGGGACAGGCTCATCCTCTCTGTGAGCTGCAGACTCTaGTTATTGAAGAGCCAACGGATGGAGACCCCAGTG +
Preference number: 6 (lower is better)
Translates to: GDRLILSVSCRL*LLKSQRMETPV
Trigger: CACTGGGGTCTCCATCCGTTGGCTCTTCAATAAGCAGAGTCTGCAGCTCACAGAGAGGATGAGCCTGTCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS TCA 72 bp AAGAACGCTTCCTCCTTCAGCAACGCTGGGCGGCACTaGTTCAATAGTGAGCTTGGCAGGGAAGGAAGGACG +
Preference number: 6 (lower is better)
Translates to: KNASSFSNAGRH*FNSELGREGRT
Trigger: CGTCCTTCCTTCCCTGCCAAGCTCACTATTGAATCAGTGCCGCCCAGCGTTGCTGAAGGAGGAAGCGTTCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS CAA 90 bp GACGGGGACAGGCTCATCCTCTCTGTGAGCTGCAGACTCTGCTTATaGAAGAGCCAACGGATGGAGACCCCAGTGTTGTCTGAGAAGCAA +
Preference number: 6 (lower is better)
Translates to: DGDRLILSVSCRLCL*KSQRMETPVLSEKQ
Trigger: TTGCTTCTCAGACAACACTGGGGTCTCCATCCGTTGGCTCTTCAATAAGCAGAGTCTGCAGCTCACAGAGAGGATGAGCCTGTCCCCGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS GCA 72 bp CACTTTGACGGGGACAGGCTCATCCTCTCTGTGAGCTaGAGACTCTGCTTATTGAAGAGCCAACGGATGGAG +
Preference number: 6 (lower is better)
Translates to: HFDGDRLILSVS*RLCLLKSQRME
Trigger: CTCCATCCGTTGGCTCTTCAATAAGCAGAGTCTGCAGCTCACAGAGAGGATGAGCCTGTCCCCGTCAAAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS TCA 72 bp CTCCTTCCTCACAGTATGTATCCTGAGTTGACACTTTaGCGGGGACAGGCTCATCCTCTCTGTGAGCTGCAG +
Preference number: 6 (lower is better)
Translates to: LLPHSMYPELTL*RGQAHPLCELQ
Trigger: CTGCAGCTCACAGAGAGGATGAGCCTGTCCCCGTCAAAGTGTCAACTCAGGATACATACTGTGAGGAAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS CAA 72 bp AGGCTCATCCTCTCTGTGAGCTGCAGACTCTGCTTATaGAAGAGCCAACGGATGGAGACCCCAGTGTTGTCT +
Preference number: 6 (lower is better)
Translates to: RLILSVSCRLCL*KSQRMETPVLS
Trigger: AGACAACACTGGGGTCTCCATCCGTTGGCTCTTCAATAAGCAGAGTCTGCAGCTCACAGAGAGGATGAGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS CAA 90 bp GACTGGGAGACTGGTCTTAGAGTTGGCTGGGTTGAAGGCCTCACATaGATACTCTCCACCATCCTCCTTCCTCACAGTATGTATCCTGAG +
Preference number: 6 (lower is better)
Translates to: DWETGLRVGWVEGLT*ILSTILLPHSMYPE
Trigger: CTCAGGATACATACTGTGAGGAAGGAGGATGGTGGAGAGTATCAATGTGAGGCCTTCAACCCAGCCAACTCTAAGACCAGTCTCCCAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS TCA 72 bp ACTCTCCACCATCCTCCTTCCTCACAGTATGTATCCTaGGTTGACACTTTGACGGGGACAGGCTCATCCTCT +
Preference number: 6 (lower is better)
Translates to: TLHHPPSSQYVS*VDTLTGTGSSS
Trigger: AGAGGATGAGCCTGTCCCCGTCAAAGTGTCAACTCAGGATACATACTGTGAGGAAGGAGGATGGTGGAGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS TCA 72 bp CTGGTCTTAGAGTTGGCTGGGTTGAAGGCCTCACATTaGTACTCTCCACCATCCTCCTTCCTCACAGTATGT +
Preference number: 6 (lower is better)
Translates to: LVLELAGLKASH*YSPPSSFLTVC
Trigger: ACATACTGTGAGGAAGGAGGATGGTGGAGAGTATCAATGTGAGGCCTTCAACCCAGCCAACTCTAAGACCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS CCA 72 bp AGGGATCCATTGCTGTACACTATCTCTCTACCGCTGTaGGCAGGGCCTGGATCGCTTAAATTCTTGAGTGTT +
Preference number: 6 (lower is better)
Translates to: RDPLLYTISLPL*AGPGSLKFLSV
Trigger: AACACTCAAGAATTTAAGCGATCCAGGCCCTGCCCACAGCGGTAGAGAGATAGTGTACAGCAATGGATCCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS CAA 72 bp TGCTTATTGAAGAGCCAACGGATGGAGACCCCAGTGTaGTCTGAGAAGCAAGTGAAGACCACTGAGCTCTGT +
Preference number: 6 (lower is better)
Translates to: CLLKSQRMETPV*SEKQVKTTELC
Trigger: ACAGAGCTCAGTGGTCTTCACTTGCTTCTCAGACAACACTGGGGTCTCCATCCGTTGGCTCTTCAATAAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS CAA 72 bp ACTGGTCTTAGAGTTGGCTGGGTTGAAGGCCTCACATaGATACTCTCCACCATCCTCCTTCCTCACAGTATG +
Preference number: 6 (lower is better)
Translates to: TGLRVGWVEGLT*ILSTILLPHSM
Trigger: CATACTGTGAGGAAGGAGGATGGTGGAGAGTATCAATGTGAGGCCTTCAACCCAGCCAACTCTAAGACCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS CAA 90 bp TGCAGACTCTGCTTATTGAAGAGCCAACGGATGGAGACCCCAGTGTaGTCTGAGAAGCAAGTGAAGACCACTGAGCTCTGTACTCTAACT +
Preference number: 6 (lower is better)
Translates to: CRLCLLKSQRMETPV*SEKQVKTTELCTLT
Trigger: AGTTAGAGTACAGAGCTCAGTGGTCTTCACTTGCTTCTCAGACAACACTGGGGTCTCCATCCGTTGGCTCTTCAATAAGCAGAGTCTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS CAA 90 bp TATCCTGTGTCCTCCTGTGTGACATTTTGGATCCATAGGGACCCGTaGCTGTACAATATCTCTCTATCACTGTGCTCAGGCCCTGTCATA +
Preference number: 6 (lower is better)
Translates to: YPVSSCVTFWIHRDP*LYNISLSLCSGPVI
Trigger: TATGACAGGGCCTGAGCACAGTGATAGAGAGATATTGTACAGCAACGGGTCCCTATGGATCCAAAATGTCACACAGGAGGACACAGGATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS GCA 72 bp GGAGTGCTATCCACACCCTTGTACCAGGAAAAGGTTTaGAGATCTTCTGGTAGATTATGGACCTGGAGAAGA +
Preference number: 6 (lower is better)
Translates to: GVLSTPLYQEKV*RSSGRLWTWRR
Trigger: TCTTCTCCAGGTCCATAATCTACCAGAAGATCTGCAAACCTTTTCCTGGTACAAGGGTGTGGATAGCACTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS TCA 72 bp TGGTTTGAAGAGTGTAATATCCTGTGTCCTCCTGTGTaGCATTTTGGATCCATAGGGACCCGTTGCTGTACA +
Preference number: 6 (lower is better)
Translates to: WFEECNILCPPV*HFGSIGTRCCT
Trigger: TGTACAGCAACGGGTCCCTATGGATCCAAAATGTCACACAGGAGGACACAGGATATTACACTCTTCAAACCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS TCA 72 bp TACTTGTGCTATAGTCCAGTAAATACACAGCAATTGTaGGCCTCCAATTTGTCAGTCCTCTGTACCAGGCAA +
Preference number: 6 (lower is better)
Translates to: YLCYSPVNTQQL*ASNLSVLCTRQ
Trigger: TTGCCTGGTACAGAGGACTGACAAATTGGAGGCTCACAATTGCTGTGTATTTACTGGACTATAGCACAAGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS CAA 90 bp GTCAGTCCTCTGTACCAGGCAAAAGCTAGAAGATTCTCTGGCAGATaGTCAACTTGTAGAAGAATATTCTCTCCTTCAACTACGTGTTGT +
Preference number: 6 (lower is better)
Translates to: VSPLYQAKARRFSGR*STCRRIFSPSTTCC
Trigger: ACAACACGTAGTTGAAGGAGAGAATATTCTTCTACAAGTTGACAATCTGCCAGAGAATCTTCTAGCTTTTGCCTGGTACAGAGGACTGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS GCA 72 bp TTGCTTTGCTATATTCTACAATTTGAAAGGATGGAGTaGTATCCACACCCTTGTACCAGGAAAAGGTTTGCA +
Preference number: 6 (lower is better)
Translates to: LLCYILQFERME*YPHPCTRKRFA
Trigger: TGCAAACCTTTTCCTGGTACAAGGGTGTGGATAGCACTCCATCCTTTCAAATTGTAGAATATAGCAAAGCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7
CDS CAA 72 bp AATGAGACGAGTAGACCTGAAGAAATGTGGATGTATTaGATTCCAGTTCTCCATGGTTACTTATGGTTTGAA +
Preference number: 6 (lower is better)
Translates to: NETSRPEEMWMY*IPVLHGYLWFE
Trigger: TTCAAACCATAAGTAACCATGGAGAACTGGAATCAAATACATCCACATTTCTTCAGGTCTACTCGTCTCATT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057810.7