Pregenerated sensors for PSG20 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000063305Ensembl transcript IDs: ENSMUST00000076677.4, ENSMUST00000108482.8
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAGGTGTGGGGAGGGATGGGAGAGATGGCCAACTGGCCATTCAAATaGATTGAAATCTGTAACTGGCAGGGGTGGGTAGGTGTGGACATC | + |
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Preference number: 1 (lower is better) Translates to: QVWGGMGEMANWPFK*IEICNWQGWVGVDI Trigger: GATGTCCACACCTACCCACCCCTGCCAGTTACAGATTTCAATTCATTTGAATGGCCAGTTGGCCATCTCTCCCATCCCTCCCCACACCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108482.8 |
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| 3UTR CCA 90 bp | ATATGGGAGAAAATGGAGGGATTCAGGATCAGGTGTGGGGAGGGATaGGAGAGATGGCCAACTGGCCATTCAAATGAATTGAAATCTGTA | + |
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Preference number: 1 (lower is better) Translates to: IWEKMEGFRIRCGEG*ERWPTGHSNELKSV Trigger: TACAGATTTCAATTCATTTGAATGGCCAGTTGGCCATCTCTCCCATCCCTCCCCACACCTGATCCTGAATCCCTCCATTTTCTCCCATAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108482.8 |
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| 3UTR TCA 72 bp | GGAGGGATGGGAGAGATGGCCAACTGGCCATTCAAATaGATTGAAATCTGTAACTGGCAGGGGTGGGTAGGT | + |
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Preference number: 3 (lower is better) Translates to: GGMGEMANWPFK*IEICNWQGWVG Trigger: ACCTACCCACCCCTGCCAGTTACAGATTTCAATTCATTTGAATGGCCAGTTGGCCATCTCTCCCATCCCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108482.8 |
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| CDS-3UTR TCA 90 bp | AACTGGCAGGGGTGGGTAGGTGTGGACATCTCAATACAGAAATGTCCCCACCCTTCATCACGGCCAGGCTaGCTGGGAGACTGGTCTTTG | + |
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Preference number: 4 (lower is better) Translates to: NWQGWVGVDISIQKCPHPSSRPG*LGDWSL Trigger: CAAAGACCAGTCTCCCAGTCAGCCTGGCCGTGATGA...AGGGTGGGGACATTTCTGTATTGAGATGTCCACACCTACCCACCCCTGCCAGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108482.8 |
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| CDS-3UTR TCA 90 bp | AACTGGCAGGGGTGGGTAGGTGTGGACATCTCAATACAGAAATGTCCCCACCCTCTGTGTCCTCCTGGGTaGCATTTTGGATCCACAGGG | + |
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Preference number: 4 (lower is better) Translates to: NWQGWVGVDISIQKCPHPLCPPG*HFGSTG Trigger: CCCTGTGGATCCAAAATGTCACCCAGGAGGACACAG...AGGGTGGGGACATTTCTGTATTGAGATGTCCACACCTACCCACCCCTGCCAGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000108482.8 |
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| CDS-3UTR TCA 90 bp | AACTGGCAGGGGTGGGTAGGTGTGGACATCTCAATACAGAAATGTCCCCACCCTCAGTGTCTTTCCAGGTaGCATTCTGGAGCAGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: NWQGWVGVDISIQKCPHPQCLSR*HSGAAG Trigger: CCCTGCTGCTCCAGAATGTCACCTGGAAAGACACTG...AGGGTGGGGACATTTCTGTATTGAGATGTCCACACCTACCCACCCCTGCCAGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108482.8 |
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| CDS-3UTR TCA 90 bp | AACTGGCAGGGGTGGGTAGGTGTGGACATCTCAATACAGAAATGTCCCCACCCTTCACTGGATCAATCCTaGGTCGGGCAGAGTCAGGAG | + |
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Preference number: 4 (lower is better) Translates to: NWQGWVGVDISIQKCPHPSLDQS*VGQSQE Trigger: CTCCTGACTCTGCCCGACTCAGGATTGATCCAGTGA...AGGGTGGGGACATTTCTGTATTGAGATGTCCACACCTACCCACCCCTGCCAGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108482.8 |
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| CDS-3UTR TCA 90 bp | AACTGGCAGGGGTGGGTAGGTGTGGACATCTCAATACAGAAATGTCCCCACCCTGGGTCATCCTCTCTGTaGGCTGAAGACTCTGATTGT | + |
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Preference number: 4 (lower is better) Translates to: NWQGWVGVDISIQKCPHPGSSSL*AEDSDC Trigger: ACAATCAGAGTCTTCAGCTCACAGAGAGGATGACCC...AGGGTGGGGACATTTCTGTATTGAGATGTCCACACCTACCCACCCCTGCCAGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108482.8 |
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| CDS-3UTR TCA 90 bp | AACTGGCAGGGGTGGGTAGGTGTGGACATCTCAATACAGAAATGTCCCCACCCTCAAGCTTGTGGACGTTaGCTTGTGCATGCACTGTTT | + |
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Preference number: 4 (lower is better) Translates to: NWQGWVGVDISIQKCPHPQACGR*LVHALF Trigger: AAACAGTGCATGCACAAGTCAACGTCCACAAGCTTG...AGGGTGGGGACATTTCTGTATTGAGATGTCCACACCTACCCACCCCTGCCAGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108482.8 |
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| CDS-3UTR GCA 90 bp | AACTGGCAGGGGTGGGTAGGTGTGGACATCTCAATACAGAAATGTCCCCACCCTAGGGACCCGTTGCTGTaGAATATCTCTCTATCACTG | + |
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Preference number: 4 (lower is better) Translates to: NWQGWVGVDISIQKCPHPRDPLL*NISLSL Trigger: CAGTGATAGAGAGATATTGCACAGCAACGGGTCCCT...AGGGTGGGGACATTTCTGTATTGAGATGTCCACACCTACCCACCCCTGCCAGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108482.8 |
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| CDS-3UTR GCA 90 bp | AACTGGCAGGGGTGGGTAGGTGTGGACATCTCAATACAGAAATGTCCCCACCCTCTCTCTTCTGCTGTGTaGGTAGCCACTGAAAATGGA | + |
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Preference number: 4 (lower is better) Translates to: NWQGWVGVDISIQKCPHPLSSAV*VATENG Trigger: TCCATTTTCAGTGGCTACGCACACAGCAGAAGAGAG...AGGGTGGGGACATTTCTGTATTGAGATGTCCACACCTACCCACCCCTGCCAGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000108482.8 |
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| CDS-3UTR TCA 90 bp | GAGAGATGGCCAACTGGCCATTCAAATGAATTGAAATCTGTAACTGGCAGGGGTAACTCTGGGCGGCACTaGTTCAATAGTGAGCTTGGC | + |
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Preference number: 4 (lower is better) Translates to: ERWPTGHSNELKSVTGRGNSGRH*FNSELG Trigger: GCCAAGCTCACTATTGAATCAGTGCCGCCCAGAGTT...ACCCCTGCCAGTTACAGATTTCAATTCATTTGAATGGCCAGTTGGCCATCTCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108482.8 |
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| CDS-3UTR CCA 90 bp | AACTGGCAGGGGTGGGTAGGTGTGGACATCTCAATACAGAAATGTCCCCACCCTTACTCTGGAAGATTGTaGACAAGGAGAAGAACGCTT | + |
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Preference number: 4 (lower is better) Translates to: NWQGWVGVDISIQKCPHPYSGRL*TRRRTL Trigger: AAGCGTTCTTCTCCTTGTCCACAATCTTCCAGAGTA...AGGGTGGGGACATTTCTGTATTGAGATGTCCACACCTACCCACCCCTGCCAGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108482.8 |
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| CDS-3UTR CCA 90 bp | GAGAGATGGCCAACTGGCCATTCAAATGAATTGAAATCTGTAACTGGCAGGGGTGTATGTATCCTGAGTTaGCACTTTGACGGGGACAGG | + |
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Preference number: 4 (lower is better) Translates to: ERWPTGHSNELKSVTGRGVCILS*HFDGDR Trigger: CCTGTCCCCGTCAAAGTGCCAACTCAGGATACATAC...ACCCCTGCCAGTTACAGATTTCAATTCATTTGAATGGCCAGTTGGCCATCTCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108482.8 |
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| CDS-3UTR TCA 90 bp | GAGGGATGGGAGAGATGGCCAACTGGCCATTCAAATGAATTGAAATCTGTAACTAGGTACACCCATTGCTaGGAAGAAGCTCAGAGGACA | + |
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Preference number: 4 (lower is better) Translates to: EGWERWPTGHSNELKSVTRYTHC*EEAQRT Trigger: TGTCCTCTGAGCTTCTTCTCAGCAATGGGTGTACCT...AGTTACAGATTTCAATTCATTTGAATGGCCAGTTGGCCATCTCTCCCATCCCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108482.8 |
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| CDS-3UTR TCA 90 bp | GAGGGATGGGAGAGATGGCCAACTGGCCATTCAAATGAATTGAAATCTGTAACTTGTGTGCGTAGCCACTaGAAATGGACTTCATCGCTT | + |
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Preference number: 4 (lower is better) Translates to: EGWERWPTGHSNELKSVTCVRSH*KWTSSL Trigger: AAGCGATGAAGTCCATTTTCAGTGGCTACGCACACA...AGTTACAGATTTCAATTCATTTGAATGGCCAGTTGGCCATCTCTCCCATCCCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108482.8 |
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| CDS-3UTR TCA 90 bp | GAGGGATGGGAGAGATGGCCAACTGGCCATTCAAATGAATTGAAATCTGTAACTGAAGACTCTGATTGTTaGAGAGCCAACGGATGGAGA | + |
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Preference number: 4 (lower is better) Translates to: EGWERWPTGHSNELKSVTEDSDC*RANGWR Trigger: TCTCCATCCGTTGGCTCTTCAACAATCAGAGTCTTC...AGTTACAGATTTCAATTCATTTGAATGGCCAGTTGGCCATCTCTCCCATCCCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108482.8 |
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| CDS-3UTR CCA 90 bp | GAGGGATGGGAGAGATGGCCAACTGGCCATTCAAATGAATTGAAATCTGTAACTTTCTCAGTCACATCCTaGAGCAGCAGGGATCCATTA | + |
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Preference number: 4 (lower is better) Translates to: EGWERWPTGHSNELKSVTFSVTS*SSRDPL Trigger: TAATGGATCCCTGCTGCTCCAGGATGTGACTGAGAA...AGTTACAGATTTCAATTCATTTGAATGGCCAGTTGGCCATCTCTCCCATCCCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108482.8 |
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| CDS-3UTR GCA 90 bp | GAGAGATGGCCAACTGGCCATTCAAATGAATTGAAATCTGTAACTGGCAGGGGTTTATACTCCACTAAATaGAGTGCAATTGCGACCCTC | + |
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Preference number: 4 (lower is better) Translates to: ERWPTGHSNELKSVTGRGLYSTK*SAIATL Trigger: GAGGGTCGCAATTGCACTGCATTTAGTGGAGTATAA...ACCCCTGCCAGTTACAGATTTCAATTCATTTGAATGGCCAGTTGGCCATCTCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108482.8 |
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| CDS-3UTR GCA 90 bp | GAGAGATGGCCAACTGGCCATTCAAATGAATTGAAATCTGTAACTGGCAGGGGTACGTTGACTTGTGCATaGACTGTTTCAACTTTCACA | + |
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Preference number: 4 (lower is better) Translates to: ERWPTGHSNELKSVTGRGTLTCA*TVSTFT Trigger: TGTGAAAGTTGAAACAGTGCATGCACAAGTCAACGT...ACCCCTGCCAGTTACAGATTTCAATTCATTTGAATGGCCAGTTGGCCATCTCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108482.8 |
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| CDS-3UTR CCA 90 bp | GAGAGATGGCCAACTGGCCATTCAAATGAATTGAAATCTGTAACTGGCAGGGGTACACCTGAAGAAATGTaGATGTATTTGATACCAGTT | + |
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Preference number: 4 (lower is better) Translates to: ERWPTGHSNELKSVTGRGTPEEM*MYLIPV Trigger: AACTGGTATCAAATACATCCACATTTCTTCAGGTGT...ACCCCTGCCAGTTACAGATTTCAATTCATTTGAATGGCCAGTTGGCCATCTCTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108482.8 |
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| CDS TCA 90 bp | TCCAGCATCCTCCTTCCTCACAGTATGTATCCTGAGTTGGCACTTTaGCGGGGACAGGGTCATCCTCTCTGTGAGCTGAAGACTCTGATT | + |
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Preference number: 5 (lower is better) Translates to: SSILLPHSMYPELAL*RGQGHPLCELKTLI Trigger: AATCAGAGTCTTCAGCTCACAGAGAGGATGACCCTGTCCCCGTCAAAGTGCCAACTCAGGATACATACTGTGAGGAAGGAGGATGCTGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076677.4 ENSMUST00000108482.8 |
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| CDS-3UTR CAA 90 bp | AACTGGCAGGGGTGGGTAGGTGTGGACATCTCAATACAGAAATGTCCCCACCCTGTGCTATCCACACCTTaGTACCAGGAAAAGGTTTGC | + |
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Preference number: 5 (lower is better) Translates to: NWQGWVGVDISIQKCPHPVLSTP*YQEKVC Trigger: GCAAACCTTTTCCTGGTACAAAGGTGTGGATAGCAC...AGGGTGGGGACATTTCTGTATTGAGATGTCCACACCTACCCACCCCTGCCAGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000108482.8 |
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| CDS CCA 90 bp | ACTCGTAGAAAAACGTTTTGTCCTTCAACCACTTGGAGCGGTGAATaGATAGTGACCTTGGCAGTGGTGGACAGAAGCCAGCAGGTAAAG | + |
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Preference number: 5 (lower is better) Translates to: TRRKTFCPSTTWSGE*IVTLAVVDRSQQVK Trigger: CTTTACCTGCTGGCTTCTGTCCACCACTGCCAAGGTCACTATCCATTCACCGCTCCAAGTGGTTGAAGGACAAAACGTTTTTCTACGAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000076677.4 ENSMUST00000108482.8 |
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| CDS-3UTR CAA 90 bp | GAGAGATGGCCAACTGGCCATTCAAATGAATTGAAATCTGTAACTGGCAGGGGTGAATACTCTGGAAGATaGTGGACAAGGAGAAGAACG | + |
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Preference number: 5 (lower is better) Translates to: ERWPTGHSNELKSVTGRGEYSGR*WTRRRT Trigger: CGTTCTTCTCCTTGTCCACAATCTTCCAGAGTATTC...ACCCCTGCCAGTTACAGATTTCAATTCATTTGAATGGCCAGTTGGCCATCTCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108482.8 |
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| CDS-3UTR CAA 90 bp | GAGAGATGGCCAACTGGCCATTCAAATGAATTGAAATCTGTAACTGGCAGGGGTTCACATGGCTGTCTATaGTTAATAGTGTGTAGAAGC | + |
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Preference number: 5 (lower is better) Translates to: ERWPTGHSNELKSVTGRGSHGCL*LIVCRS Trigger: GCTTCTACACACTATTAACAATAGACAGCCATGTGA...ACCCCTGCCAGTTACAGATTTCAATTCATTTGAATGGCCAGTTGGCCATCTCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108482.8 |
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| CDS-3UTR CAA 90 bp | GAGAGATGGCCAACTGGCCATTCAAATGAATTGAAATCTGTAACTGGCAGGGGTGGATCGCTTAAATTCTaGGCTATTTTGTATTCAGCA | + |
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Preference number: 5 (lower is better) Translates to: ERWPTGHSNELKSVTGRGGSLKF*AILYSA Trigger: TGCTGAATACAAAATAGCCAAGAATTTAAGCGATCC...ACCCCTGCCAGTTACAGATTTCAATTCATTTGAATGGCCAGTTGGCCATCTCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108482.8 |
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| CDS-3UTR CAA 90 bp | GAGAGATGGCCAACTGGCCATTCAAATGAATTGAAATCTGTAACTGGCAGGGGTATGGACTTCATCGCTTaGCTGTATTCTACAATTCTA | + |
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Preference number: 5 (lower is better) Translates to: ERWPTGHSNELKSVTGRGMDFIA*LYSTIL Trigger: TAGAATTGTAGAATACAGCAAAGCGATGAAGTCCAT...ACCCCTGCCAGTTACAGATTTCAATTCATTTGAATGGCCAGTTGGCCATCTCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108482.8 |
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| CDS TCA 90 bp | ACAGGTGAAAAGAGCGGAGTACACCTGAAGAAATGTGGATGTATTTaGTACCAGTTTTCCATGTTTACTTATGGTTTGAAGAGTATAATA | + |
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Preference number: 5 (lower is better) Translates to: TGEKSGVHLKKCGCI*YQFSMFTYGLKSII Trigger: TATTATACTCTTCAAACCATAAGTAAACATGGAAAACTGGTATCAAATACATCCACATTTCTTCAGGTGTACTCCGCTCTTTTCACCTGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076677.4 ENSMUST00000108482.8 |
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| CDS TCA 72 bp | AAGAACGCTTCCCCCTTCAGCAACTCTGGGCGGCACTaGTTCAATAGTGAGCTTGGCAGGGGAGGTAGGACG | + |
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Preference number: 6 (lower is better) Translates to: KNASPFSNSGRH*FNSELGRGGRT Trigger: CGTCCTACCTCCCCTGCCAAGCTCACTATTGAATCAGTGCCGCCCAGAGTTGCTGAAGGGGGAAGCGTTCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000076677.4 ENSMUST00000108482.8 |
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| CDS GCA 72 bp | CAGCAGGTAAAGAGGGAGGCTGTGAGCAGAACCCTCTaGCTGGAGGTACACCCATTGCTGAGAAGAAGCTCA | + |
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Preference number: 6 (lower is better) Translates to: QQVKREAVSRTL*LEVHPLLRRSS Trigger: TGAGCTTCTTCTCAGCAATGGGTGTACCTCCAGGCAGAGGGTTCTGCTCACAGCCTCCCTCTTTACCTGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076677.4 ENSMUST00000108482.8 |
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| CDS CCA 72 bp | AAGAACACTTCCCCCTTCAGCAGCATGACATGTCACTaGATCAATCCTGAGTCGGGCAGAGTCAGGAGGGTC | + |
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Preference number: 6 (lower is better) Translates to: KNTSPFSSMTCH*INPESGRVRRV Trigger: GACCCTCCTGACTCTGCCCGACTCAGGATTGATCCAGTGACATGTCATGCTGCTGAAGGGGGAAGTGTTCTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000076677.4 ENSMUST00000108482.8 |
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| CDS CCA 72 bp | AAAACGTTTTGTCCTTCAACCACTTGGAGCGGTGAATaGATAGTGACCTTGGCAGTGGTGGACAGAAGCCAG | + |
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Preference number: 6 (lower is better) Translates to: KTFCPSTTWSGE*IVTLAVVDRSQ Trigger: CTGGCTTCTGTCCACCACTGCCAAGGTCACTATCCATTCACCGCTCCAAGTGGTTGAAGGACAAAACGTTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076677.4 ENSMUST00000108482.8 |
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| CDS CCA 72 bp | AGGGATCCATTGCTGAACACTATCTCTCTACCGCTGTaGGCAGGGCCTGGATCGCTTAAATTCTTGGCTATT | + |
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Preference number: 6 (lower is better) Translates to: RDPLLNTISLPL*AGPGSLKFLAI Trigger: AATAGCCAAGAATTTAAGCGATCCAGGCCCTGCCCACAGCGGTAGAGAGATAGTGTTCAGCAATGGATCCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076677.4 ENSMUST00000108482.8 |
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| CDS CAA 72 bp | CTGTCCGTGACTCTCACAACAGGCTGTGTCACAAGCTaGTGGACGTTGACTTGTGCATGCACTGTTTCAACT | + |
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Preference number: 6 (lower is better) Translates to: LSVTLTTGCVTS*WTLTCACTVST Trigger: AGTTGAAACAGTGCATGCACAAGTCAACGTCCACAAGCTTGTGACACAGCCTGTTGTGAGAGTCACGGACAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076677.4 ENSMUST00000108482.8 |
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| CDS TCA 72 bp | TGGTTTGAAGAGTATAATATCCTGTGTCCTCCTGGGTaGCATTTTGGATCCACAGGGACCCGTTGCTGTGCA | + |
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Preference number: 6 (lower is better) Translates to: WFEEYNILCPPG*HFGSTGTRCCA Trigger: TGCACAGCAACGGGTCCCTGTGGATCCAAAATGTCACCCAGGAGGACACAGGATATTATACTCTTCAAACCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076677.4 ENSMUST00000108482.8 |
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| CDS TCA 72 bp | CTCTCACAACAGGCTGTGTCACAAGCTTGTGGACGTTaGCTTGTGCATGCACTGTTTCAACTTTCACATGGC | + |
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Preference number: 6 (lower is better) Translates to: LSQQAVSQACGR*LVHALFQLSHG Trigger: GCCATGTGAAAGTTGAAACAGTGCATGCACAAGTCAACGTCCACAAGCTTGTGACACAGCCTGTTGTGAGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076677.4 ENSMUST00000108482.8 |
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| CDS GCA 72 bp | AGGGACCCGTTGCTGTGCAATATCTCTCTATCACTGTaGTCAGGCCCTGTCATACTTGCATTATACTCCACT | + |
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Preference number: 6 (lower is better) Translates to: RDPLLCNISLSL*SGPVILALYST Trigger: AGTGGAGTATAATGCAAGTATGACAGGGCCTGAGCACAGTGATAGAGAGATATTGCACAGCAACGGGTCCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076677.4 ENSMUST00000108482.8 |
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| CDS CCA 72 bp | TACCAGGAAAAGGTTTGCACATCTTCTGGCAGATTATaGACCTGGAGAAGAACACTTCCCCCTTCAGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: YQEKVCTSSGRL*TWRRTLPPSAA Trigger: TGCTGCTGAAGGGGGAAGTGTTCTTCTCCAGGTCCATAATCTGCCAGAAGATGTGCAAACCTTTTCCTGGTA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000076677.4 ENSMUST00000108482.8 |
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| CDS CCA 72 bp | CACACCTTTGTACCAGGAAAAGGTTTGCACATCTTCTaGCAGATTATGGACCTGGAGAAGAACACTTCCCCC | + |
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Preference number: 6 (lower is better) Translates to: HTFVPGKGLHIF*QIMDLEKNTSP Trigger: GGGGGAAGTGTTCTTCTCCAGGTCCATAATCTGCCAGAAGATGTGCAAACCTTTTCCTGGTACAAAGGTGTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076677.4 ENSMUST00000108482.8 |
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| CDS CCA 72 bp | TCCGTGACTCTCACAACAGGCTGTGTCACAAGCTTGTaGACGTTGACTTGTGCATGCACTGTTTCAACTTTC | + |
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Preference number: 6 (lower is better) Translates to: SVTLTTGCVTSL*TLTCACTVSTF Trigger: GAAAGTTGAAACAGTGCATGCACAAGTCAACGTCCACAAGCTTGTGACACAGCCTGTTGTGAGAGTCACGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076677.4 ENSMUST00000108482.8 |
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| CDS GCA 72 bp | GGAGTGCTATCCACACCTTTGTACCAGGAAAAGGTTTaGACATCTTCTGGCAGATTATGGACCTGGAGAAGA | + |
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Preference number: 6 (lower is better) Translates to: GVLSTPLYQEKV*TSSGRLWTWRR Trigger: TCTTCTCCAGGTCCATAATCTGCCAGAAGATGTGCAAACCTTTTCCTGGTACAAAGGTGTGGATAGCACTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076677.4 ENSMUST00000108482.8 |
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| CDS CCA 72 bp | TCAACTCGTAGAAAAACGTTTTGTCCTTCAACCACTTaGAGCGGTGAATGGATAGTGACCTTGGCAGTGGTG | + |
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Preference number: 6 (lower is better) Translates to: STRRKTFCPSTT*SGEWIVTLAVV Trigger: CACCACTGCCAAGGTCACTATCCATTCACCGCTCCAAGTGGTTGAAGGACAAAACGTTTTTCTACGAGTTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000076677.4 ENSMUST00000108482.8 |
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| CDS CAA 72 bp | TGGAGTGCTATCCACACCTTTGTACCAGGAAAAGGTTaGCACATCTTCTGGCAGATTATGGACCTGGAGAAG | + |
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Preference number: 6 (lower is better) Translates to: WSAIHTFVPGKG*HIFWQIMDLEK Trigger: CTTCTCCAGGTCCATAATCTGCCAGAAGATGTGCAAACCTTTTCCTGGTACAAAGGTGTGGATAGCACTCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076677.4 ENSMUST00000108482.8 |
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| CDS CAA 72 bp | ACTCTCACAACAGGCTGTGTCACAAGCTTGTGGACGTaGACTTGTGCATGCACTGTTTCAACTTTCACATGG | + |
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Preference number: 6 (lower is better) Translates to: TLTTGCVTSLWT*TCACTVSTFTW Trigger: CCATGTGAAAGTTGAAACAGTGCATGCACAAGTCAACGTCCACAAGCTTGTGACACAGCCTGTTGTGAGAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076677.4 ENSMUST00000108482.8 |
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| CDS TCA 72 bp | TGTACCCTGTCTCTCTTCTGCTGTGTGCGTAGCCACTaGAAATGGACTTCATCGCTTTGCTGTATTCTACAA | + |
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Preference number: 6 (lower is better) Translates to: CTLSLFCCVRSH*KWTSSLCCILQ Trigger: TTGTAGAATACAGCAAAGCGATGAAGTCCATTTTCAGTGGCTACGCACACAGCAGAAGAGAGACAGGGTACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076677.4 ENSMUST00000108482.8 |
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| CDS GCA 72 bp | TCAGGCCCTGTCATACTTGCATTATACTCCACTAAATaGAGTGCAATTGCGACCCTCCAATTTCTCAGTCCT | + |
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Preference number: 6 (lower is better) Translates to: SGPVILALYSTK*SAIATLQFLSP Trigger: AGGACTGAGAAATTGGAGGGTCGCAATTGCACTGCATTTAGTGGAGTATAATGCAAGTATGACAGGGCCTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076677.4 ENSMUST00000108482.8 |
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| CDS GCA 72 bp | GGCTGTGTCACAAGCTTGTGGACGTTGACTTGTGCATaGACTGTTTCAACTTTCACATGGCTGTCTATTGTT | + |
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Preference number: 6 (lower is better) Translates to: GCVTSLWTLTCA*TVSTFTWLSIV Trigger: AACAATAGACAGCCATGTGAAAGTTGAAACAGTGCATGCACAAGTCAACGTCCACAAGCTTGTGACACAGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076677.4 ENSMUST00000108482.8 |
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| CDS CAA 72 bp | CTACCGCTGTGGGCAGGGCCTGGATCGCTTAAATTCTaGGCTATTTTGTATTCAGCAATCTCAACCTCATTA | + |
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Preference number: 6 (lower is better) Translates to: LPLWAGPGSLKF*AILYSAISTSL Trigger: TAATGAGGTTGAGATTGCTGAATACAAAATAGCCAAGAATTTAAGCGATCCAGGCCCTGCCCACAGCGGTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076677.4 ENSMUST00000108482.8 |
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| CDS CAA 72 bp | ATATCTCTCTATCACTGTGCTCAGGCCCTGTCATACTaGCATTATACTCCACTAAATGCAGTGCAATTGCGA | + |
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Preference number: 6 (lower is better) Translates to: ISLYHCAQALSY*HYTPLNAVQLR Trigger: TCGCAATTGCACTGCATTTAGTGGAGTATAATGCAAGTATGACAGGGCCTGAGCACAGTGATAGAGAGATAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076677.4 ENSMUST00000108482.8 |
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| CDS CAA 72 bp | GTGCATGCACTGTTTCAACTTTCACATGGCTGTCTATaGTTAATAGTGTGTAGAAGCCAGTGTCTTTCTCAG | + |
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Preference number: 6 (lower is better) Translates to: VHALFQLSHGCL*LIVCRSQCLSQ Trigger: CTGAGAAAGACACTGGCTTCTACACACTATTAACAATAGACAGCCATGTGAAAGTTGAAACAGTGCATGCAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076677.4 ENSMUST00000108482.8 |
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