Pregenerated sensors for PSG18 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000003505Ensembl transcript IDs: ENSMUST00000003597.15, ENSMUST00000098783.5, ENSMUST00000182983.2
Found 100 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGGCCTGGGATCCCAGATTGTCCTCTCCAGCAATGCATTCCTGGGTaGGTCTCTGTGGAAGATGTCCAGGGTAACTATCATAACTGTGGC | + |
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Preference number: 1 (lower is better) Translates to: GPGIPDCPLQQCIPG*VSVEDVQGNYHNCG Trigger: GCCACAGTTATGATAGTTACCCTGGACATCTTCCACAGAGACTCACCCAGGAATGCATTGCTGGAGAGGACAATCTGGGATCCCAGGCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| 3UTR GCA 90 bp | CTGCAGGAAAGAATTCCAGAAGGTGGACATCAGAGGACATACACTTaGCAAAAGGACCTGTGTCCTTTGTCCATCACTATGGAGACACTG | + |
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Preference number: 1 (lower is better) Translates to: LQERIPEGGHQRTYT*QKDLCPLSITMETL Trigger: CAGTGTCTCCATAGTGATGGACAAAGGACACAGGTCCTTTTGGCAAGTGTATGTCCTCTGATGTCCACCTTCTGGAATTCTTTCCTGCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| 3UTR TCA 90 bp | CAACGGAATTTCACCTCTTTCTGGATGCTCTTAAGGTGGCAACTCTaGAATGTTTGCCTGCAGGAAAGAATTCCAGAAGGTGGACATCAG | + |
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Preference number: 1 (lower is better) Translates to: QRNFTSFWMLLRWQL*NVCLQERIPEGGHQ Trigger: CTGATGTCCACCTTCTGGAATTCTTTCCTGCAGGCAAACATTTCAGAGTTGCCACCTTAAGAGCATCCAGAAAGAGGTGAAATTCCGTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| 3UTR CCA 90 bp | AACCCAGTACCAAAATGGAATGCATGGTATGTACTCTCTTATAAGTaGACATTAGCCATAAAATACAGAATACACACACTACACTACACA | + |
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Preference number: 1 (lower is better) Translates to: NPVPKWNAWYVLSYK*TLAIKYRIHTLHYT Trigger: TGTGTAGTGTAGTGTGTGTATTCTGTATTTTATGGCTAATGTCCACTTATAAGAGAGTACATACCATGCATTCCATTTTGGTACTGGGTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000182983.2 |
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| 3UTR-3UTR GCA 90 bp | TATGCTACCTCCACAGAGGGAGTCTATATTAGGGATATAGGCATGGTGAGAGTCGGTACAGCCCATGTGTaGCCTGCAGCAAGTGCCCAA | + |
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Preference number: 2 (lower is better) Translates to: YATSTEGVYIRDIGMVRVGTAHV*PAASAQ Trigger: TTGGGCACTTGCTGCAGGGCACACATGGGCTGTACC...GACTCTCACCATGCCTATATCCCTAATATAGACTCCCTCTGTGGAGGTAGCATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| 3UTR-3UTR TCA 90 bp | GCTTCCTCAGCTAGAGCTTATGCTACCTCCACAGAGGGAGTCTATATTAGGGATCCCAAGGGTCAATGCTaGGTCTCACATTCTTGGGCT | + |
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Preference number: 2 (lower is better) Translates to: ASSARAYATSTEGVYIRDPKGQC*VSHSWA Trigger: AGCCCAAGAATGTGAGACTCAGCATTGACCCTTGGG...ATCCCTAATATAGACTCCCTCTGTGGAGGTAGCATAAGCTCTAGCTGAGGAAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| 3UTR CAA 90 bp | CCTGCAGGAAAGAATTCCAGAAGGTGGACATCAGAGGACATACACTaGCCAAAAGGACCTGTGTCCTTTGTCCATCACTATGGAGACACT | + |
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Preference number: 2 (lower is better) Translates to: PAGKNSRRWTSEDIH*PKGPVSFVHHYGDT Trigger: AGTGTCTCCATAGTGATGGACAAAGGACACAGGTCCTTTTGGCAAGTGTATGTCCTCTGATGTCCACCTTCTGGAATTCTTTCCTGCAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| 3UTR-3UTR GCA 90 bp | CTTCCTCAGCTAGAGCTTATGCTACCTCCACAGAGGGAGTCTATATTAGGGATAGTGCCCTGCAGCAAGTaGCCAAATACCAATGTGATG | + |
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Preference number: 2 (lower is better) Translates to: LPQLELMLPPQRESILGIVPCSK*PNTNVM Trigger: CATCACATTGGTATTTGGGCACTTGCTGCAGGGCAC...TATCCCTAATATAGACTCCCTCTGTGGAGGTAGCATAAGCTCTAGCTGAGGAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| 3UTR-3UTR TCA 90 bp | TGGAAGATGTCCAGGGTAACTATCATAACTGTGGCTCCTGACAGTGCACTGGATCTCACATTCTTGGGCTaGGTTTTTCCAGCACATGAT | + |
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Preference number: 2 (lower is better) Translates to: WKMSRVTIITVAPDSALDLTFLG*VFPAHD Trigger: ATCATGTGCTGGAAAAACTCAGCCCAAGAATGTGAG...ATCCAGTGCACTGTCAGGAGCCACAGTTATGATAGTTACCCTGGACATCTTCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| 3UTR-3UTR CCA 90 bp | TCTGAAATGTTTGCCTGCAGGAAAGAATTCCAGAAGGTGGACATCAGAGGACATCTTTGTCCATCACTATaGAGACACTGGCCTTCCTGT | + |
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Preference number: 2 (lower is better) Translates to: SEMFACRKEFQKVDIRGHLCPSL*RHWPSC Trigger: ACAGGAAGGCCAGTGTCTCCATAGTGATGGACAAAG...ATGTCCTCTGATGTCCACCTTCTGGAATTCTTTCCTGCAGGCAAACATTTCAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| 3UTR CAA 90 bp | TTTCACCTCTTTCTGGATGCTCTTAAGGTGGCAACTCTGAAATGTTaGCCTGCAGGAAAGAATTCCAGAAGGTGGACATCAGAGGACATA | + |
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Preference number: 2 (lower is better) Translates to: FHLFLDALKVATLKC*PAGKNSRRWTSEDI Trigger: TATGTCCTCTGATGTCCACCTTCTGGAATTCTTTCCTGCAGGCAAACATTTCAGAGTTGCCACCTTAAGAGCATCCAGAAAGAGGTGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| 3UTR-3UTR GCA 90 bp | CTTCCTCAGCTAGAGCTTATGCTACCTCCACAGAGGGAGTCTATATTAGGGATACAATGTGATGAAAAATaGAGTGGAGGAGATAGCAGG | + |
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Preference number: 2 (lower is better) Translates to: LPQLELMLPPQRESILGIQCDEK*SGGDSR Trigger: CCTGCTATCTCCTCCACTGCATTTTTCATCACATTG...TATCCCTAATATAGACTCCCTCTGTGGAGGTAGCATAAGCTCTAGCTGAGGAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| 3UTR-3UTR CCA 90 bp | GAATTTCACCTCTTTCTGGATGCTCTTAAGGTGGCAACTCTGAAATGTTTGCCTCTCCTGACAGTGCACTaGATGTTGACACAAGTTAGA | + |
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Preference number: 2 (lower is better) Translates to: EFHLFLDALKVATLKCLPLLTVH*MLTQVR Trigger: TCTAACTTGTGTCAACATCCAGTGCACTGTCAGGAG...AGGCAAACATTTCAGAGTTGCCACCTTAAGAGCATCCAGAAAGAGGTGAAATTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| 3UTR-3UTR CCA 90 bp | ACATTAGCCATAAAATACAGAATACACACACTACACTACACAGATCCTAAGAAGGAGGGATGGGAGAGATaGCAAATTGGCCATGACAAT | + |
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Preference number: 2 (lower is better) Translates to: TLAIKYRIHTLHYTDPKKEGWER*QIGHDN Trigger: ATTGTCATGGCCAATTTGCCATCTCTCCCATCCCTC...CTTCTTAGGATCTGTGTAGTGTAGTGTGTGTATTCTGTATTTTATGGCTAATGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182983.2 |
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| 3UTR-3UTR CCA 90 bp | GCCATAAAATACAGAATACACACACTACACTACACAGATCCTAAGAAGATAAACGAATGTGGGAGAAAATaGAGGGATTCAGGATCAGGT | + |
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Preference number: 2 (lower is better) Translates to: AIKYRIHTLHYTDPKKINECGRK*RDSGSG Trigger: ACCTGATCCTGAATCCCTCCATTTTCTCCCACATTC...GTTTATCTTCTTAGGATCTGTGTAGTGTAGTGTGTGTATTCTGTATTTTATGGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000182983.2 |
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| 3UTR TCA 72 bp | GGATATAGGCATGGTGAGAGTCCCAAGGGTCAATGCTaGGTCTCACATTCTTGGGCTGAGTTTTTCCAGCAC | + |
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Preference number: 3 (lower is better) Translates to: GYRHGESPKGQC*VSHSWAEFFQH Trigger: GTGCTGGAAAAACTCAGCCCAAGAATGTGAGACTCAGCATTGACCCTTGGGACTCTCACCATGCCTATATCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| 3UTR CCA 72 bp | GTCCTCTCCAGCAATGCATTCCTGGGTGAGTCTCTGTaGAAGATGTCCAGGGTAACTATCATAACTGTGGCT | + |
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Preference number: 3 (lower is better) Translates to: VLSSNAFLGESL*KMSRVTIITVA Trigger: AGCCACAGTTATGATAGTTACCCTGGACATCTTCCACAGAGACTCACCCAGGAATGCATTGCTGGAGAGGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| 3UTR TCA 72 bp | ATCCCAGATTGTCCTCTCCAGCAATGCATTCCTGGGTaGGTCTCTGTGGAAGATGTCCAGGGTAACTATCAT | + |
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Preference number: 3 (lower is better) Translates to: IPDCPLQQCIPG*VSVEDVQGNYH Trigger: ATGATAGTTACCCTGGACATCTTCCACAGAGACTCACCCAGGAATGCATTGCTGGAGAGGACAATCTGGGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| 3UTR TCA 72 bp | CCTTTGTCCATCACTATGGAGACACTGGCCTTCCTGTaGAGCCTAATAAGGCCATCCAAACAGCTAGTTAGG | + |
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Preference number: 3 (lower is better) Translates to: PLSITMETLAFL*SLIRPSKQLVR Trigger: CCTAACTAGCTGTTTGGATGGCCTTATTAGGCTTCACAGGAAGGCCAGTGTCTCCATAGTGATGGACAAAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| 3UTR GCA 72 bp | CTGCAGCAAGTGCCCAAATACCAATGTGATGAAAAATaGAGTGGAGGAGATAGCAGGCACAACCAACTCCTT | + |
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Preference number: 3 (lower is better) Translates to: LQQVPKYQCDEK*SGGDSRHNQLL Trigger: AAGGAGTTGGTTGTGCCTGCTATCTCCTCCACTGCATTTTTCATCACATTGGTATTTGGGCACTTGCTGCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| 3UTR CCA 72 bp | CTGAAATGTTTGCCTGCAGGAAAGAATTCCAGAAGGTaGACATCAGAGGACATACACTTGCCAAAAGGACCT | + |
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Preference number: 3 (lower is better) Translates to: LKCLPAGKNSRR*TSEDIHLPKGP Trigger: AGGTCCTTTTGGCAAGTGTATGTCCTCTGATGTCCACCTTCTGGAATTCTTTCCTGCAGGCAAACATTTCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| 3UTR CCA 72 bp | CCAAAATGGAATGCATGGTATGTACTCTCTTATAAGTaGACATTAGCCATAAAATACAGAATACACACACTA | + |
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Preference number: 3 (lower is better) Translates to: PKWNAWYVLSYK*TLAIKYRIHTL Trigger: TAGTGTGTGTATTCTGTATTTTATGGCTAATGTCCACTTATAAGAGAGTACATACCATGCATTCCATTTTGG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000182983.2 |
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| CDS-3UTR GCA 90 bp | CTCTCCAGCAATGCATTCCTGGGTGAGTCTCTGTGGAAGATGTCCAGGGTAACTGTGAGGAGAACCCTCTaGCAGGAGGTACACCCGTTG | + |
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Preference number: 4 (lower is better) Translates to: LSSNAFLGESLWKMSRVTVRRTL*QEVHPL Trigger: CAACGGGTGTACCTCCTGGCAGAGGGTTCTCCTCAC...AGTTACCCTGGACATCTTCCACAGAGACTCACCCAGGAATGCATTGCTGGAGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| CDS-3UTR CCA 90 bp | TCCACAGAGGGAGTCTATATTAGGGATATAGGCATGGTGAGAGTCCCAAGGGTCCTCAGCAGCGTGCCGTaGCACTGGATCAATGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: STEGVYIRDIGMVRVPRVLSSVP*HWINAE Trigger: CTCAGCATTGATCCAGTGCCACGGCACGCTGCTGAG...GACCCTTGGGACTCTCACCATGCCTATATCCCTAATATAGACTCCCTCTGTGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| 3UTR CAA 72 bp | ATGAAAAGAAAGGTGAAGGGTTCTGACCTCATGGTGTaGGTACAGCCCATGTGTGCCCTGCAGCAAGTGCCC | + |
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Preference number: 4 (lower is better) Translates to: MKRKVKGSDLMV*VQPMCALQQVP Trigger: GGGCACTTGCTGCAGGGCACACATGGGCTGTACCAACACCATGAGGTCAGAACCCTTCACCTTTCTTTTCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| CDS-3UTR GCA 90 bp | AGGACATACACTTGCCAAAAGGACCTGTGTCCTTTGTCCATCACTATGGAGACACCTCCCTCAGCAGCGTaGCGTGGCACTGGATCAATG | + |
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Preference number: 4 (lower is better) Translates to: RTYTCQKDLCPLSITMETPPSAA*RGTGSM Trigger: CATTGATCCAGTGCCACGGCACGCTGCTGAGGGAGG...TGTCTCCATAGTGATGGACAAAGGACACAGGTCCTTTTGGCAAGTGTATGTCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| CDS-3UTR CCA 90 bp | TATGGATATCTCAATACAGAAATGCCCCCACCCTCCTATAGCATAAGAGGAGGGCTCAGCAGCGTGCCGTaGCACTGGATCAATGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: YGYLNTEMPPPSYSIRGGLSSVP*HWINAE Trigger: CTCAGCATTGATCCAGTGCCACGGCACGCTGCTGAG...CCCTCCTCTTATGCTATAGGAGGGTGGGGGCATTTCTGTATTGAGATATCCATA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000182983.2 |
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| CDS-3UTR TCA 90 bp | TCCACAGCTTCCTCAGCTAGAGCTTATGCTACCTCCACAGAGGGAGTCTATATTCTGTGTCTTTCCAGGTaGCATTCTGGAGCAGCAGTG | + |
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Preference number: 4 (lower is better) Translates to: STASSARAYATSTEGVYILCLSR*HSGAAV Trigger: CACTGCTGCTCCAGAATGTCACCTGGAAAGACACAG...AATATAGACTCCCTCTGTGGAGGTAGCATAAGCTCTAGCTGAGGAAGCTGTGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| CDS-3UTR GCA 90 bp | TGTGCCCTGCAGCAAGTGCCCAAATACCAATGTGATGAAAAATGCAGTGGAGGAGAACAAGGAGAAGAATaGTTCCCCCTGCAGCAACGC | + |
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Preference number: 4 (lower is better) Translates to: CALQQVPKYQCDEKCSGGEQGEE*FPLQQR Trigger: GCGTTGCTGCAGGGGGAAGCATTCTTCTCCTTGTTC...TCCTCCACTGCATTTTTCATCACATTGGTATTTGGGCACTTGCTGCAGGGCACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| CDS-3UTR GCA 90 bp | TGTGCCCTGCAGCAAGTGCCCAAATACCAATGTGATGAAAAATGCAGTGGAGGACTCTCTTCTGCTGTGTaGACGGCCTCTGATGATGGA | + |
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Preference number: 4 (lower is better) Translates to: CALQQVPKYQCDEKCSGGLSSAV*TASDDG Trigger: TCCATCATCAGAGGCCGTGCACACAGCAGAAGAGAG...TCCTCCACTGCATTTTTCATCACATTGGTATTTGGGCACTTGCTGCAGGGCACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| CDS-3UTR CCA 90 bp | TCCACAGAGGGAGTCTATATTAGGGATATAGGCATGGTGAGAGTCCCAAGGGTCGGATCAATGCTGAGTTaGGCAGAGTCGAGAGTGTCA | + |
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Preference number: 4 (lower is better) Translates to: STEGVYIRDIGMVRVPRVGSMLS*AESRVS Trigger: TGACACTCTCGACTCTGCCCAACTCAGCATTGATCC...GACCCTTGGGACTCTCACCATGCCTATATCCCTAATATAGACTCCCTCTGTGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| CDS-3UTR CCA 90 bp | GCTTCCTCAGCTAGAGCTTATGCTACCTCCACAGAGGGAGTCTATATTAGGGATTTCTCAGTGACATCCTaGAGCAGCAGGGATCCGTTG | + |
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Preference number: 4 (lower is better) Translates to: ASSARAYATSTEGVYIRDFSVTS*SSRDPL Trigger: CAACGGATCCCTGCTGCTCCAGGATGTCACTGAGAA...ATCCCTAATATAGACTCCCTCTGTGGAGGTAGCATAAGCTCTAGCTGAGGAAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| CDS-3UTR TCA 90 bp | AGGCACAACCAACTCCTTAGAGTTGACTTATTAGGTACAATAAGCCACACCCAGCAGAGTCTTTCTCAGTaGCATCCTGGAGCAGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: RHNQLLRVDLLGTISHTQQSLSQ*HPGAAG Trigger: CCCTGCTGCTCCAGGATGTCACTGAGAAAGACTCTG...CTGGGTGTGGCTTATTGTACCTAATAAGTCAACTCTAAGGAGTTGGTTGTGCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| CDS-3UTR TCA 90 bp | TATGGATATCTCAATACAGAAATGCCCCCACCCTCCTATAGCATAAGAGGAGGGGGGTCATCCTCTCTGTaGGCTGAAGACGCTGATTGT | + |
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Preference number: 4 (lower is better) Translates to: YGYLNTEMPPPSYSIRGGGSSSL*AEDADC Trigger: ACAATCAGCGTCTTCAGCTCACAGAGAGGATGACCC...CCCTCCTCTTATGCTATAGGAGGGTGGGGGCATTTCTGTATTGAGATATCCATA 49% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENSMUST00000182983.2 |
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| CDS-3UTR CCA 90 bp | TATGCTACCTCCACAGAGGGAGTCTATATTAGGGATATAGGCATGGTGAGAGTCGGCAGATTATGGACCTaGAGAAGAACACTTCCTCCC | + |
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Preference number: 4 (lower is better) Translates to: YATSTEGVYIRDIGMVRVGRLWT*RRTLPP Trigger: GGGAGGAAGTGTTCTTCTCCAGGTCCATAATCTGCC...GACTCTCACCATGCCTATATCCCTAATATAGACTCCCTCTGTGGAGGTAGCATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| CDS-3UTR TCA 90 bp | TGTGCCCTGCAGCAAGTGCCCAAATACCAATGTGATGAAAAATGCAGTGGAGGAAGGTACACCCGTTGCTaGAAAGTTCAGATGACAACT | + |
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Preference number: 4 (lower is better) Translates to: CALQQVPKYQCDEKCSGGRYTRC*KVQMTT Trigger: AGTTGTCATCTGAACTTTTCAGCAACGGGTGTACCT...TCCTCCACTGCATTTTTCATCACATTGGTATTTGGGCACTTGCTGCAGGGCACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| CDS-3UTR GCA 90 bp | CCAAAAGGACCTGTGTCCTTTGTCCATCACTATGGAGACACTGGCCTTCCTGTGTACCAGGAAAAGGTTTaGACATCTTCTGGCAGATTA | + |
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Preference number: 4 (lower is better) Translates to: PKGPVSFVHHYGDTGLPVYQEKV*TSSGRL Trigger: TAATCTGCCAGAAGATGTGCAAACCTTTTCCTGGTA...CACAGGAAGGCCAGTGTCTCCATAGTGATGGACAAAGGACACAGGTCCTTTTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| CDS-3UTR GCA 90 bp | TCCACAGCTTCCTCAGCTAGAGCTTATGCTACCTCCACAGAGGGAGTCTATATTCTCAACCTTGTTAAATaGAATCAGCCCTTTGTACCA | + |
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Preference number: 4 (lower is better) Translates to: STASSARAYATSTEGVYILNLVK*NQPFVP Trigger: TGGTACAAAGGGCTGATTGCATTTAACAAGGTTGAG...AATATAGACTCCCTCTGTGGAGGTAGCATAAGCTCTAGCTGAGGAAGCTGTGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| CDS-3UTR GCA 90 bp | ACAGCCTTGTACCGTGTCAGCTCCAACAGGAATTCAAAGCCAAGCAAAAACAAAGCAGCAGTGATCCATTaGTATACACTGTCTCTCTAC | + |
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Preference number: 4 (lower is better) Translates to: TALYRVSSNRNSKPSKNKAAVIH*YTLSLY Trigger: GTAGAGAGACAGTGTATAGCAATGGATCACTGCTGC...TTTGTTTTTGCTTGGCTTTGAATTCCTGTTGGAGCTGACACGGTACAAGGCTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| 3UTR CAA 72 bp | AAGAATTCCAGAAGGTGGACATCAGAGGACATACACTaGCCAAAAGGACCTGTGTCCTTTGTCCATCACTAT | + |
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Preference number: 4 (lower is better) Translates to: KNSRRWTSEDIH*PKGPVSFVHHY Trigger: ATAGTGATGGACAAAGGACACAGGTCCTTTTGGCAAGTGTATGTCCTCTGATGTCCACCTTCTGGAATTCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| CDS-3UTR CCA 90 bp | ACGGAATTTCACCTCTTTCTGGATGCTCTTAAGGTGGCAACTCTGAAATGTTTGGTTCCCCTGAATTCTTaGCTGTTCTGTATCGAGCAA | + |
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Preference number: 4 (lower is better) Translates to: TEFHLFLDALKVATLKCLVPLNS*LFCIEQ Trigger: TTGCTCGATACAGAACAGCCAAGAATTCAGGGGAAC...CAAACATTTCAGAGTTGCCACCTTAAGAGCATCCAGAAAGAGGTGAAATTCCGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| CDS-3UTR CCA 90 bp | ACAGCCTTGTACCGTGTCAGCTCCAACAGGAATTCAAAGCCAAGCAAAAACAAACGATGGATGTTGACTTaGACATGTGCTGTTACAACT | + |
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Preference number: 4 (lower is better) Translates to: TALYRVSSNRNSKPSKNKRWMLT*TCAVTT Trigger: AGTTGTAACAGCACATGTCCAAGTCAACATCCATCG...TTTGTTTTTGCTTGGCTTTGAATTCCTGTTGGAGCTGACACGGTACAAGGCTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| CDS-3UTR TCA 90 bp | AGAATACACACACTACACTACACAGATCCTAAGAAGATAAACAAGTTAGAAGGCGAAGACGCTGATTGTTaGAGAGCCAACGGATGGAGA | + |
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Preference number: 4 (lower is better) Translates to: RIHTLHYTDPKKINKLEGEDADC*RANGWR Trigger: TCTCCATCCGTTGGCTCTTCAACAATCAGCGTCTTC...GCCTTCTAACTTGTTTATCTTCTTAGGATCTGTGTAGTGTAGTGTGTGTATTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000182983.2 |
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| CDS-3UTR TCA 90 bp | ACATTAGCCATAAAATACAGAATACACACACTACACTACACAGATCCTAAGAAGTCATCACAGTCAGGCTaGCTGGGAGACTGGTCTTTG | + |
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Preference number: 4 (lower is better) Translates to: TLAIKYRIHTLHYTDPKKSSQSG*LGDWSL Trigger: CAAAGACCAGTCTCCCAGTCAGCCTGACTGTGATGA...CTTCTTAGGATCTGTGTAGTGTAGTGTGTGTATTCTGTATTTTATGGCTAATGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182983.2 |
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| CDS-3UTR TCA 90 bp | ACGGAATTTCACCTCTTTCTGGATGCTCTTAAGGTGGCAACTCTGAAATGTTTGGCAATTTTAAAGTCCTaGGTACTAAGCACACCTTTG | + |
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Preference number: 4 (lower is better) Translates to: TEFHLFLDALKVATLKCLAILKS*VLSTPL Trigger: CAAAGGTGTGCTTAGTACTCAGGACTTTAAAATTGC...CAAACATTTCAGAGTTGCCACCTTAAGAGCATCCAGAAAGAGGTGAAATTCCGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| CDS-3UTR CCA 90 bp | ACATTAGCCATAAAATACAGAATACACACACTACACTACACAGATCCTAAGAAGGGATCAATGCTGAGTTaGGCAGAGTCGAGAGTGTCA | + |
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Preference number: 4 (lower is better) Translates to: TLAIKYRIHTLHYTDPKKGSMLS*AESRVS Trigger: TGACACTCTCGACTCTGCCCAACTCAGCATTGATCC...CTTCTTAGGATCTGTGTAGTGTAGTGTGTGTATTCTGTATTTTATGGCTAATGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182983.2 |
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| CDS-3UTR CCA 90 bp | GCCATAAAATACAGAATACACACACTACACTACACAGATCCTAAGAAGATAAACGGCAGATTATGGACCTaGAGAAGAACACTTCCTCCC | + |
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Preference number: 4 (lower is better) Translates to: AIKYRIHTLHYTDPKKINGRLWT*RRTLPP Trigger: GGGAGGAAGTGTTCTTCTCCAGGTCCATAATCTGCC...GTTTATCTTCTTAGGATCTGTGTAGTGTAGTGTGTGTATTCTGTATTTTATGGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182983.2 |
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| CDS-3UTR TCA 90 bp | ACATTAGCCATAAAATACAGAATACACACACTACACTACACAGATCCTAAGAAGGCAAGTGAAGACAACTaGGCTCTGTACTCGAACTGT | + |
|
Preference number: 4 (lower is better) Translates to: TLAIKYRIHTLHYTDPKKASEDN*ALYSNC Trigger: ACAGTTCGAGTACAGAGCTCAGTTGTCTTCACTTGC...CTTCTTAGGATCTGTGTAGTGTAGTGTGTGTATTCTGTATTTTATGGCTAATGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182983.2 |
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| CDS-3UTR GCA 90 bp | GAATTTCACCTCTTTCTGGATGCTCTTAAGGTGGCAACTCTGAAATGTTTGCCTGATGATGGACTTCGTTaGTATGCTATATTCTGCAAT | + |
|
Preference number: 4 (lower is better) Translates to: EFHLFLDALKVATLKCLPDDGLR*YAIFCN Trigger: ATTGCAGAATATAGCATAGCAACGAAGTCCATCATC...AGGCAAACATTTCAGAGTTGCCACCTTAAGAGCATCCAGAAAGAGGTGAAATTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| CDS-3UTR CCA 90 bp | AGAATACACACACTACACTACACAGATCCTAAGAAGATAAACAAGTTAGAAGGCGTATGTATCCTGAGTTaGCATTTTGATGGGGACAGG | + |
|
Preference number: 4 (lower is better) Translates to: RIHTLHYTDPKKINKLEGVCILS*HFDGDR Trigger: CCTGTCCCCATCAAAATGCCAACTCAGGATACATAC...GCCTTCTAACTTGTTTATCTTCTTAGGATCTGTGTAGTGTAGTGTGTGTATTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000182983.2 |
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| CDS-3UTR TCA 90 bp | GCCATAAAATACAGAATACACACACTACACTACACAGATCCTAAGAAGATAAACTGTCTGAGAAGCAAGTaGAGACAACTGAGCTCTGTA | + |
|
Preference number: 4 (lower is better) Translates to: AIKYRIHTLHYTDPKKINCLRSK*RQLSSV Trigger: TACAGAGCTCAGTTGTCTTCACTTGCTTCTCAGACA...GTTTATCTTCTTAGGATCTGTGTAGTGTAGTGTGTGTATTCTGTATTTTATGGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182983.2 |
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| CDS-3UTR GCA 90 bp | AGAATACACACACTACACTACACAGATCCTAAGAAGATAAACAAGTTAGAAGGCTACCAGGAAAAGGTTTaGACATCTTCTGGCAGATTA | + |
|
Preference number: 4 (lower is better) Translates to: RIHTLHYTDPKKINKLEGYQEKV*TSSGRL Trigger: TAATCTGCCAGAAGATGTGCAAACCTTTTCCTGGTA...GCCTTCTAACTTGTTTATCTTCTTAGGATCTGTGTAGTGTAGTGTGTGTATTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182983.2 |
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| CDS GCA 90 bp | GGCAGATTATGGACCTGGAGAAGAACACTTCCTCCCTCAGCAGCGTaGCGTGGCACTGGATCAATGCTGAGTTGGGCAGAGTCGAGAGTG | + |
|
Preference number: 5 (lower is better) Translates to: GRLWTWRRTLPPSAA*RGTGSMLSWAESRV Trigger: CACTCTCGACTCTGCCCAACTCAGCATTGATCCAGTGCCACGGCACGCTGCTGAGGGAGGAAGTGTTCTTCTCCAGGTCCATAATCTGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000003597.15 ENSMUST00000098783.5 ENSMUST00000182983.2 |
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| CDS CCA 90 bp | ACACCTTTGTACCAGGAAAAGGTTTGCACATCTTCTGGCAGATTATaGACCTGGAGAAGAACACTTCCTCCCTCAGCAGCGTGCCGTGGC | + |
|
Preference number: 5 (lower is better) Translates to: TPLYQEKVCTSSGRL*TWRRTLPPSAACRG Trigger: GCCACGGCACGCTGCTGAGGGAGGAAGTGTTCTTCTCCAGGTCCATAATCTGCCAGAAGATGTGCAAACCTTTTCCTGGTACAAAGGTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003597.15 ENSMUST00000098783.5 |
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| CDS CCA 90 bp | AGCTCTTTGTACCAGGAAAAGGTTTGCACATCTTCTGGCAGATTATaGACCTGGAGAAGAACACTTCCTCCCTCAGCAGCGTGCCGTGGC | + |
|
Preference number: 5 (lower is better) Translates to: SSLYQEKVCTSSGRL*TWRRTLPPSAACRG Trigger: GCCACGGCACGCTGCTGAGGGAGGAAGTGTTCTTCTCCAGGTCCATAATCTGCCAGAAGATGTGCAAACCTTTTCCTGGTACAAAGAGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182983.2 |
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| CDS-3UTR CAA 90 bp | CATCCAGGCCTCATAGTGCTCTGTGTGGGGACTCCACAGCTTCCTCAGCTAGAGCACTTACGATGGATGTaGACTTGGACATGTGCTGTT | + |
|
Preference number: 5 (lower is better) Translates to: HPGLIVLCVGTPQLPQLEHLRWM*TWTCAV Trigger: AACAGCACATGTCCAAGTCAACATCCATCGTAAGTG...CTCTAGCTGAGGAAGCTGTGGAGTCCCCACACAGAGCACTATGAGGCCTGGATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| CDS TCA 90 bp | TCCAGCATCCTCCTTCCTCACAGTATGTATCCTGAGTTGGCATTTTaGTGGGGACAGGGTCATCCTCTCTGTGAGCTGAAGACGCTGATT | + |
|
Preference number: 5 (lower is better) Translates to: SSILLPHSMYPELAF*WGQGHPLCELKTLI Trigger: AATCAGCGTCTTCAGCTCACAGAGAGGATGACCCTGTCCCCATCAAAATGCCAACTCAGGATACATACTGTGAGGAAGGAGGATGCTGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003597.15 ENSMUST00000182983.2 |
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| CDS-3UTR CAA 90 bp | TTCCTGGGTGAGTCTCTGTGGAAGATGTCCAGGGTAACTATCATAACTGTGGCTTGGATCAATGCTGAGTaGGGCAGAGTCGAGAGTGTC | + |
|
Preference number: 5 (lower is better) Translates to: FLGESLWKMSRVTIITVAWINAE*GRVESV Trigger: GACACTCTCGACTCTGCCCAACTCAGCATTGATCCA...AGCCACAGTTATGATAGTTACCCTGGACATCTTCCACAGAGACTCACCCAGGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| CDS-3UTR CAA 90 bp | TTCCTGGGTGAGTCTCTGTGGAAGATGTCCAGGGTAACTATCATAACTGTGGCTAGCAGCAGGGATCCGTaGGTGTACCCTATCTCTCTT | + |
|
Preference number: 5 (lower is better) Translates to: FLGESLWKMSRVTIITVASSRDP*VYPISL Trigger: AAGAGAGATAGGGTACACCAACGGATCCCTGCTGCT...AGCCACAGTTATGATAGTTACCCTGGACATCTTCCACAGAGACTCACCCAGGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| CDS-3UTR CAA 90 bp | CCAAAAGGACCTGTGTCCTTTGTCCATCACTATGGAGACACTGGCCTTCCTGTGCGAGCAATCTCAACCTaGTTAAATGCAATCAGCCCT | + |
|
Preference number: 5 (lower is better) Translates to: PKGPVSFVHHYGDTGLPVRAIST*LNAISP Trigger: AGGGCTGATTGCATTTAACAAGGTTGAGATTGCTCG...CACAGGAAGGCCAGTGTCTCCATAGTGATGGACAAAGGACACAGGTCCTTTTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| CDS-3UTR CAA 90 bp | GCTTCCTCAGCTAGAGCTTATGCTACCTCCACAGAGGGAGTCTATATTAGGGATGGTTCCCCTGAATTCTaGGCTGTTCTGTATCGAGCA | + |
|
Preference number: 5 (lower is better) Translates to: ASSARAYATSTEGVYIRDGSPEF*AVLYRA Trigger: TGCTCGATACAGAACAGCCAAGAATTCAGGGGAACC...ATCCCTAATATAGACTCCCTCTGTGGAGGTAGCATAAGCTCTAGCTGAGGAAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| CDS TCA 90 bp | CGAACTGTGCTATCTGTGACTCTCATGGCAGGCTGTGTCACAAGCTaGTGGATGTTGACTTGGACATGTGCTGTTACAACTCTCACATTG | + |
|
Preference number: 5 (lower is better) Translates to: RTVLSVTLMAGCVTS*WMLTWTCAVTTLTL Trigger: CAATGTGAGAGTTGTAACAGCACATGTCCAAGTCAACATCCATCAGCTTGTGACACAGCCTGCCATGAGAGTCACAGATAGCACAGTTCG 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003597.15 |
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| CDS-3UTR CAA 90 bp | TCCACAGAGGGAGTCTATATTAGGGATATAGGCATGGTGAGAGTCCCAAGGGTCGTACTAAGCACACCTTaGTACCAGGAAAAGGTTTGC | + |
|
Preference number: 5 (lower is better) Translates to: STEGVYIRDIGMVRVPRVVLSTP*YQEKVC Trigger: GCAAACCTTTTCCTGGTACAAAGGTGTGCTTAGTAC...GACCCTTGGGACTCTCACCATGCCTATATCCCTAATATAGACTCCCTCTGTGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| CDS-3UTR CAA 90 bp | AGATTTCCATCCAGGCCTCATAGTGCTCTGTGTGGGGACTCCACAGCTTCCTCAGCGATTGAAGATACTTaGGAATATTGTGAACAAGGA | + |
|
Preference number: 5 (lower is better) Translates to: RFPSRPHSALCGDSTASSAIEDT*EYCEQG Trigger: TCCTTGTTCACAATATTCCAAAGTATCTTCAATCGC...TGAGGAAGCTGTGGAGTCCCCACACAGAGCACTATGAGGCCTGGATGGAAATCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| CDS GCA 90 bp | GTGTGCACGGCCTCTGATGATGGACTTCGTTGCTATGCTATATTCTaGAATTTTAAAGTCCTGAGTACTAAGCACACCTTTGTACCAGGA | + |
|
Preference number: 5 (lower is better) Translates to: VCTASDDGLRCYAIF*NFKVLSTKHTFVPG Trigger: TCCTGGTACAAAGGTGTGCTTAGTACTCAGGACTTTAAAATTGCAGAATATAGCATAGCAACGAAGTCCATCATCAGAGGCCGTGCACAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003597.15 ENSMUST00000098783.5 |
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| CDS GCA 90 bp | ATTCAGCCCCTTCACCATTACACTATAGTAGTACAGCCAATGCTGTaGAATTGCTTGCCACAAATTTGTCATTCCTCTGTACCAGCCAAA | + |
|
Preference number: 5 (lower is better) Translates to: IQPLHHYTIVVQPML*NCLPQICHSSVPAK Trigger: TTTGGCTGGTACAGAGGAATGACAAATTTGTGGCAAGCAATTGCACAGCATTGGCTGTACTACTATAGTGTAATGGTGAAGGGGCTGAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003597.15 |
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| CDS-3UTR CAA 90 bp | ACATTAGCCATAAAATACAGAATACACACACTACACTACACAGATCCTAAGAAGTGGATCAATGCTGAGTaGGGCAGAGTCGAGAGTGTC | + |
|
Preference number: 5 (lower is better) Translates to: TLAIKYRIHTLHYTDPKKWINAE*GRVESV Trigger: GACACTCTCGACTCTGCCCAACTCAGCATTGATCCA...CTTCTTAGGATCTGTGTAGTGTAGTGTGTGTATTCTGTATTTTATGGCTAATGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182983.2 |
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| CDS GCA 90 bp | ATAAGGGTAGTAGGACGCACACAGATGAAAAGAGAGGAGTACACGTaGAAGTACAGGGATGTATTTGATACTATTTCTCCTCGTTTACTT | + |
|
Preference number: 5 (lower is better) Translates to: IRVVGRTQMKREEYT*KYRDVFDTISPRLL Trigger: AAGTAAACGAGGAGAAATAGTATCAAATACATCCCTGTACTTGCACGTGTACTCCTCTCTTTTCATCTGTGTGCGTCCTACTACCCTTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003597.15 |
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| CDS-3UTR CAA 90 bp | AGAATACACACACTACACTACACAGATCCTAAGAAGATAAACAAGTTAGAAGGCTGTGTCACAAGCTCTTaGTACCAGGAAAAGGTTTGC | + |
|
Preference number: 5 (lower is better) Translates to: RIHTLHYTDPKKINKLEGCVTSS*YQEKVC Trigger: GCAAACCTTTTCCTGGTACAAAGAGCTTGTGACACA...GCCTTCTAACTTGTTTATCTTCTTAGGATCTGTGTAGTGTAGTGTGTGTATTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182983.2 |
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| CDS TCA 90 bp | ATGATGGACTTCGTTGCTATGCTATATTCTGCAATTTTAAAGTCCTaGGTACTAAGCACACCTTTGTACCAGGAAAAGGTTTGCACATCT | + |
|
Preference number: 5 (lower is better) Translates to: MMDFVAMLYSAILKS*VLSTPLYQEKVCTS Trigger: AGATGTGCAAACCTTTTCCTGGTACAAAGGTGTGCTTAGTACTCAGGACTTTAAAATTGCAGAATATAGCATAGCAACGAAGTCCATCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003597.15 ENSMUST00000098783.5 |
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| CDS TCA 72 bp | TGGTGGGCAGGAGCCAGCAGGTTAAGAGGGAGGCTGTaGGGAGAACCCTCTGCCAGGAGGTACACCCGTTGC | + |
|
Preference number: 6 (lower is better) Translates to: WWAGASRLRGRL*GEPSARRYTRC Trigger: GCAACGGGTGTACCTCCTGGCAGAGGGTTCTCCTCACAGCCTCCCTCTTAACCTGCTGGCTCCTGCCCACCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003597.15 |
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| CDS TCA 72 bp | CTCCCTCAGCAGCGTGCCGTGGCACTGGATCAATGCTaGGTTGGGCAGAGTCGAGAGTGTCACAGCACAAGG | + |
|
Preference number: 6 (lower is better) Translates to: LPQQRAVALDQC*VGQSRECHSTR Trigger: CCTTGTGCTGTGACACTCTCGACTCTGCCCAACTCAGCATTGATCCAGTGCCACGGCACGCTGCTGAGGGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003597.15 ENSMUST00000098783.5 |
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| CDS GCA 72 bp | TGGACCTGGAGAAGAACACTTCCTCCCTCAGCAGCGTaGCGTGGCACTGGATCAATGCTGAGTTGGGCAGAG | + |
|
Preference number: 6 (lower is better) Translates to: WTWRRTLPPSAA*RGTGSMLSWAE Trigger: CTCTGCCCAACTCAGCATTGATCCAGTGCCACGGCACGCTGCTGAGGGAGGAAGTGTTCTTCTCCAGGTCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000003597.15 ENSMUST00000098783.5 ENSMUST00000182983.2 |
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| CDS CAA 90 bp | AAGCCAGAGTCTTTCTCAGTGACATCCTGGAGCAGCAGGGATCCGTaGGTGTACCCTATCTCTCTTCTGCTGTGTGCACGGCCTCTGATG | + |
|
Preference number: 6 (lower is better) Translates to: KPESFSVTSWSSRDP*VYPISLLLCARPLM Trigger: CATCAGAGGCCGTGCACACAGCAGAAGAGAGATAGGGTACACCAACGGATCCCTGCTGCTCCAGGATGTCACTGAGAAAGACTCTGGCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003597.15 ENSMUST00000098783.5 |
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| CDS TCA 72 bp | TGTCTCTCTACCGCTGTGGGCCGGACCAGGTTCCCCTaGATTCTTGGCTGTTCTGTATCGAGCAATCTCAAC | + |
|
Preference number: 6 (lower is better) Translates to: CLSTAVGRTRFP*ILGCSVSSNLN Trigger: GTTGAGATTGCTCGATACAGAACAGCCAAGAATTCAGGGGAACCTGGTCCGGCCCACAGCGGTAGAGAGACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003597.15 ENSMUST00000098783.5 |
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| CDS CAA 72 bp | TCTTTCTCAGTGACATCCTGGAGCAGCAGGGATCCGTaGGTGTACCCTATCTCTCTTCTGCTGTGTGCACGG | + |
|
Preference number: 6 (lower is better) Translates to: SFSVTSWSSRDP*VYPISLLLCAR Trigger: CCGTGCACACAGCAGAAGAGAGATAGGGTACACCAACGGATCCCTGCTGCTCCAGGATGTCACTGAGAAAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003597.15 ENSMUST00000098783.5 |
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| CDS CCA 72 bp | GAAAAGGTTTGCACATCTTCTGGCAGATTATGGACCTaGAGAAGAACACTTCCTCCCTCAGCAGCGTGCCGT | + |
|
Preference number: 6 (lower is better) Translates to: EKVCTSSGRLWT*RRTLPPSAACR Trigger: ACGGCACGCTGCTGAGGGAGGAAGTGTTCTTCTCCAGGTCCATAATCTGCCAGAAGATGTGCAAACCTTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003597.15 ENSMUST00000098783.5 ENSMUST00000182983.2 |
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| CDS TCA 72 bp | AGACAACTGAGCTCTGTACTCGAACTGTGCTATCTGTaGCTCTCATGGCAGGCTGTGTCACAAGCTGATGGA | + |
|
Preference number: 6 (lower is better) Translates to: RQLSSVLELCYL*LSWQAVSQADG Trigger: TCCATCAGCTTGTGACACAGCCTGCCATGAGAGTCACAGATAGCACAGTTCGAGTACAGAGCTCAGTTGTCT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003597.15 |
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| CDS GCA 72 bp | ACACAGATGAAAAGAGAGGCTGTGAGGAGAACCCTCTaGCAGGAGGTACACCCGTTGCTGAAAAGTTCAGAT | + |
|
Preference number: 6 (lower is better) Translates to: TQMKREAVRRTL*QEVHPLLKSSD Trigger: ATCTGAACTTTTCAGCAACGGGTGTACCTCCTGGCAGAGGGTTCTCCTCACAGCCTCTCTTTTCATCTGTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098783.5 |
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| CDS CCA 72 bp | TACCAGGAAAAGGTTTGCACATCTTCTGGCAGATTATaGACCTGGAGAAGAACACTTCCTCCCTCAGCAGCG | + |
|
Preference number: 6 (lower is better) Translates to: YQEKVCTSSGRL*TWRRTLPPSAA Trigger: CGCTGCTGAGGGAGGAAGTGTTCTTCTCCAGGTCCATAATCTGCCAGAAGATGTGCAAACCTTTTCCTGGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003597.15 ENSMUST00000098783.5 ENSMUST00000182983.2 |
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| CDS TCA 72 bp | AACGGATGGAGACCCCAGTGTTGTCTGAGAAGCAAGTaGAGACAACTGAGCTCTGTACTCGAACTGTGCTAT | + |
|
Preference number: 6 (lower is better) Translates to: NGWRPQCCLRSK*RQLSSVLELCY Trigger: ATAGCACAGTTCGAGTACAGAGCTCAGTTGTCTTCACTTGCTTCTCAGACAACACTGGGGTCTCCATCCGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003597.15 ENSMUST00000182983.2 |
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| CDS TCA 72 bp | AGACAACTGAGCTCTGTACTCGAACTGTGCTATCTGTaGCTCTCATGGCAGGCTGTGTCACAAGCTCTTTGT | + |
|
Preference number: 6 (lower is better) Translates to: RQLSSVLELCYL*LSWQAVSQALC Trigger: ACAAAGAGCTTGTGACACAGCCTGCCATGAGAGTCACAGATAGCACAGTTCGAGTACAGAGCTCAGTTGTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000182983.2 |
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| CDS TCA 72 bp | TTGTTATTAGTGTGTATAAGCCAGAGTCTTTCTCAGTaGCATCCTGGAGCAGCAGGGATCCGTTGGTGTACC | + |
|
Preference number: 6 (lower is better) Translates to: LLLVCISQSLSQ*HPGAAGIRWCT Trigger: GGTACACCAACGGATCCCTGCTGCTCCAGGATGTCACTGAGAAAGACTCTGGCTTATACACACTAATAACAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003597.15 ENSMUST00000098783.5 |
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| CDS GCA 72 bp | GGCTGTGTCACAAGCTCTTTGTACCAGGAAAAGGTTTaGACATCTTCTGGCAGATTATGGACCTGGAGAAGA | + |
|
Preference number: 6 (lower is better) Translates to: GCVTSSLYQEKV*TSSGRLWTWRR Trigger: TCTTCTCCAGGTCCATAATCTGCCAGAAGATGTGCAAACCTTTTCCTGGTACAAAGAGCTTGTGACACAGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182983.2 |
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| CDS CCA 72 bp | CACACCTTTGTACCAGGAAAAGGTTTGCACATCTTCTaGCAGATTATGGACCTGGAGAAGAACACTTCCTCC | + |
|
Preference number: 6 (lower is better) Translates to: HTFVPGKGLHIF*QIMDLEKNTSS Trigger: GGAGGAAGTGTTCTTCTCCAGGTCCATAATCTGCCAGAAGATGTGCAAACCTTTTCCTGGTACAAAGGTGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003597.15 ENSMUST00000098783.5 |
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| CDS CAA 72 bp | AGGCTGTGTCACAAGCTCTTTGTACCAGGAAAAGGTTaGCACATCTTCTGGCAGATTATGGACCTGGAGAAG | + |
|
Preference number: 6 (lower is better) Translates to: RLCHKLFVPGKG*HIFWQIMDLEK Trigger: CTTCTCCAGGTCCATAATCTGCCAGAAGATGTGCAAACCTTTTCCTGGTACAAAGAGCTTGTGACACAGCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182983.2 |
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| CDS GCA 72 bp | GAAGATACTTTGGAATATTGTGAACAAGGAGAAGAATaGTTCCCCCTGCAGCAACGCTGGCTGGCACTAATT | + |
|
Preference number: 6 (lower is better) Translates to: EDTLEYCEQGEE*FPLQQRWLALI Trigger: AATTAGTGCCAGCCAGCGTTGCTGCAGGGGGAAGCATTCTTCTCCTTGTTCACAATATTCCAAAGTATCTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000003597.15 ENSMUST00000098783.5 |
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| CDS GCA 72 bp | CAAGGAATGGGAGGTGTCCACCTGAAGGTAAATGTGTaGGAATTCCATTTTCTGATATCGAGTCAGAGTTCG | + |
|
Preference number: 6 (lower is better) Translates to: QGMGGVHLKVNV*EFHFLISSQSS Trigger: CGAACTCTGACTCGATATCAGAAAATGGAATTCGCACACATTTACCTTCAGGTGGACACCTCCCATTCCTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003597.15 ENSMUST00000098783.5 |
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| CDS CCA 72 bp | AAGCTCTTTGTACCAGGAAAAGGTTTGCACATCTTCTaGCAGATTATGGACCTGGAGAAGAACACTTCCTCC | + |
|
Preference number: 6 (lower is better) Translates to: KLFVPGKGLHIF*QIMDLEKNTSS Trigger: GGAGGAAGTGTTCTTCTCCAGGTCCATAATCTGCCAGAAGATGTGCAAACCTTTTCCTGGTACAAAGAGCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182983.2 |
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| CDS CAA 72 bp | CTGAGTACTAAGCACACCTTTGTACCAGGAAAAGGTTaGCACATCTTCTGGCAGATTATGGACCTGGAGAAG | + |
|
Preference number: 6 (lower is better) Translates to: LSTKHTFVPGKG*HIFWQIMDLEK Trigger: CTTCTCCAGGTCCATAATCTGCCAGAAGATGTGCAAACCTTTTCCTGGTACAAAGGTGTGCTTAGTACTCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003597.15 ENSMUST00000098783.5 |
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| CDS GCA 72 bp | TCTGCTGTGTGCACGGCCTCTGATGATGGACTTCGTTaGTATGCTATATTCTGCAATTTTAAAGTCCTGAGT | + |
|
Preference number: 6 (lower is better) Translates to: SAVCTASDDGLR*YAIFCNFKVLS Trigger: ACTCAGGACTTTAAAATTGCAGAATATAGCATAGCAACGAAGTCCATCATCAGAGGCCGTGCACACAGCAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003597.15 ENSMUST00000098783.5 |
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| CDS GCA 72 bp | CATTACACTATAGTAGTACAGCCAATGCTGTGCAATTaGTTGCCACAAATTTGTCATTCCTCTGTACCAGCC | + |
|
Preference number: 6 (lower is better) Translates to: HYTIVVQPMLCN*LPQICHSSVPA Trigger: GGCTGGTACAGAGGAATGACAAATTTGTGGCAAGCAATTGCACAGCATTGGCTGTACTACTATAGTGTAATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003597.15 |
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| CDS GCA 72 bp | GGCTGTTCTGTATCGAGCAATCTCAACCTTGTTAAATaGAATCAGCCCTTTGTACCAGAAAAGCGATTGAAG | + |
|
Preference number: 6 (lower is better) Translates to: GCSVSSNLNLVK*NQPFVPEKRLK Trigger: CTTCAATCGCTTTTCTGGTACAAAGGGCTGATTGCATTTAACAAGGTTGAGATTGCTCGATACAGAACAGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003597.15 ENSMUST00000098783.5 |
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| CDS CAA 72 bp | AGTACAGCCAATGCTGTGCAATTGCTTGCCACAAATTaGTCATTCCTCTGTACCAGCCAAACACTAGAAGAT | + |
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Preference number: 6 (lower is better) Translates to: STANAVQLLATN*SFLCTSQTLED Trigger: ATCTTCTAGTGTTTGGCTGGTACAGAGGAATGACAAATTTGTGGCAAGCAATTGCACAGCATTGGCTGTACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003597.15 |
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| CDS CAA 72 bp | CCATTACACTATAGTAGTACAGCCAATGCTGTGCAATaGCTTGCCACAAATTTGTCATTCCTCTGTACCAGC | + |
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Preference number: 6 (lower is better) Translates to: PLHYSSTANAVQ*LATNLSFLCTS Trigger: GCTGGTACAGAGGAATGACAAATTTGTGGCAAGCAATTGCACAGCATTGGCTGTACTACTATAGTGTAATGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003597.15 |
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| CDS GCA 72 bp | CTGTGTCACAAGCTGATGGATGTTGACTTGGACATGTaGTGTTACAACTCTCACATTGCTGTCTATTGTTAT | + |
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Preference number: 6 (lower is better) Translates to: LCHKLMDVDLDM*CYNSHIAVYCY Trigger: ATAACAATAGACAGCAATGTGAGAGTTGTAACAGCACATGTCCAAGTCAACATCCATCAGCTTGTGACACAG 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003597.15 |
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| CDS CAA 72 bp | TACACTATAGTAGTACAGCCAATGCTGTGCAATTGCTaGCCACAAATTTGTCATTCCTCTGTACCAGCCAAA | + |
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Preference number: 6 (lower is better) Translates to: YTIVVQPMLCNC*PQICHSSVPAK Trigger: TTTGGCTGGTACAGAGGAATGACAAATTTGTGGCAAGCAATTGCACAGCATTGGCTGTACTACTATAGTGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003597.15 |
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| CDS GCA 72 bp | CTTCACCATTACACTATAGTAGTACAGCCAATGCTGTaGAATTGCTTGCCACAAATTTGTCATTCCTCTGTA | + |
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Preference number: 6 (lower is better) Translates to: LHHYTIVVQPML*NCLPQICHSSV Trigger: TACAGAGGAATGACAAATTTGTGGCAAGCAATTGCACAGCATTGGCTGTACTACTATAGTGTAATGGTGAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003597.15 |
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| CDS CAA 72 bp | GGACATGTGCTGTTACAACTCTCACATTGCTGTCTATaGTTATTAGTGTGTATAAGCCAGAGTCTTTCTCAG | + |
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Preference number: 6 (lower is better) Translates to: GHVLLQLSHCCL*LLVCISQSLSQ Trigger: CTGAGAAAGACTCTGGCTTATACACACTAATAACAATAGACAGCAATGTGAGAGTTGTAACAGCACATGTCC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003597.15 ENSMUST00000098783.5 |
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| CDS TCA 72 bp | AAGAGAGGAGTACACGTGCAAGTACAGGGATGTATTTaGTACTATTTCTCCTCGTTTACTTATGGTTTGAAA | + |
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Preference number: 6 (lower is better) Translates to: KRGVHVQVQGCI*YYFSSFTYGLK Trigger: TTTCAAACCATAAGTAAACGAGGAGAAATAGTATCAAATACATCCCTGTACTTGCACGTGTACTCCTCTCTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003597.15 |
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