RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PSENEN (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036835

Ensembl transcript IDs: ENSMUST00000043898.8, ENSMUST00000207031.2, ENSMUST00000207747.2, ENSMUST00000208628.2

Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp TCAGGGTCTGAGGGAAAGCCTAGAGCAGAGAAGCCTTCATCCTGGGAGAAAGAACTGCTCTGTGTAGGCTaGGGCGAGGAACGCCTCTCT +
Preference number: 4 (lower is better)
Translates to: SGSEGKPRAEKPSSWEKELLCVG*GEERLS
Trigger: AGAGAGGCGTTCCTCGCCCCAGCCTACACAGAGCAG...TTCTTTCTCCCAGGATGAAGGCTTCTCTGCTCTAGGCTTTCCCTCAGACCCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043898.8
ENSMUST00000207747.2
CDS-3UTR TCA 90 bp CAGATGTCTTCAGGGTCTGAGGGAAAGCCTAGAGCAGAGAAGCCTTCATCCTGGGAGGAAGCCCACAGCTaGGCGCCAAACATAGCCTTT +
Preference number: 4 (lower is better)
Translates to: QMSSGSEGKPRAEKPSSWEEAHS*APNIAF
Trigger: AAAGGCTATGTTTGGCGCTCAGCTGTGGGCTTCCTC...CCAGGATGAAGGCTTCTCTGCTCTAGGCTTTCCCTCAGACCCTGAAGACATCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043898.8
ENSMUST00000207747.2
CDS-3UTR CCA 90 bp AAGCCTAGAGCAGAGAAGCCTTCATCCTGGGAGAAAGAACAGATCAGCAGCTTACTGCTCTGTGTAGGCTaGGGCGAGGAACGCCTCTCT +
Preference number: 4 (lower is better)
Translates to: KPRAEKPSSWEKEQISSLLLCVG*GEERLS
Trigger: AGAGAGGCGTTCCTCGCCCCAGCCTACACAGAGCAG...TAAGCTGCTGATCTGTTCTTTCTCCCAGGATGAAGGCTTCTCTGCTCTAGGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043898.8
ENSMUST00000207747.2
CDS-3UTR TCA 90 bp AGGGAAAGCCTAGAGCAGAGAAGCCTTCATCCTGGGAGAAAGAACAGATCAGCAGAGGAAGCCCACAGCTaGGCGCCAAACATAGCCTTT +
Preference number: 4 (lower is better)
Translates to: RESLEQRSLHPGRKNRSAEEAHS*APNIAF
Trigger: AAAGGCTATGTTTGGCGCTCAGCTGTGGGCTTCCTC...TGCTGATCTGTTCTTTCTCCCAGGATGAAGGCTTCTCTGCTCTAGGCTTTCCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043898.8
ENSMUST00000207747.2
CDS-3UTR TCA 90 bp AGCAGAGAAGCCTTCATCCTGGGAGAAAGAACAGATCAGCAGCTTATGAAGTTGTGCCCAGGGGAATGGTaGAGGAGAGGTAGTCCCCAA +
Preference number: 4 (lower is better)
Translates to: SREAFILGERTDQQLMKLCPGEW*RRGSPQ
Trigger: TTGGGGACTACCTCTCCTTCACCATTCCCCTGGGCA...CAACTTCATAAGCTGCTGATCTGTTCTTTCTCCCAGGATGAAGGCTTCTCTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043898.8
ENSMUST00000207747.2
CDS-3UTR TCA 90 bp GTTAGGGTCCTTTATTGGGGCAGATGGGAAATGAGAAACAGATGTCTTCAGGGTTCCAGGTGGCGAGAATaGTCACCCAGAAGAGGAAGC +
Preference number: 4 (lower is better)
Translates to: VRVLYWGRWEMRNRCLQGSRWRE*SPRRGS
Trigger: GCTTCCTCTTCTGGGTGATCATTCTCGCCACCTGGA...ACCCTGAAGACATCTGTTTCTCATTTCCCATCTGCCCCAATAAAGGACCCTAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043898.8
ENSMUST00000207747.2
CDS-3UTR CCA 90 bp TCAGGGTCTGAGGGAAAGCCTAGAGCAGAGAAGCCTTCATCCTGGGAGAAAGAATCAACTTCTCCTCATTaGATACCCGCTCCAAGTTCA +
Preference number: 4 (lower is better)
Translates to: SGSEGKPRAEKPSSWEKESTSPH*IPAPSS
Trigger: TGAACTTGGAGCGGGTATCCAATGAGGAGAAGTTGA...TTCTTTCTCCCAGGATGAAGGCTTCTCTGCTCTAGGCTTTCCCTCAGACCCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043898.8
ENSMUST00000207747.2
CDS-3UTR CCA 90 bp AACAGATGTCTTCAGGGTCTGAGGGAAAGCCTAGAGCAGAGAAGCCTTCATCCTTCAACTTCTCCTCATTaGATACCCGCTCCAAGTTCA +
Preference number: 4 (lower is better)
Translates to: NRCLQGLRESLEQRSLHPSTSPH*IPAPSS
Trigger: TGAACTTGGAGCGGGTATCCAATGAGGAGAAGTTGA...AGGATGAAGGCTTCTCTGCTCTAGGCTTTCCCTCAGACCCTGAAGACATCTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043898.8
ENSMUST00000207747.2
CDS-3UTR TCA 90 bp GGAAAGCCTAGAGCAGAGAAGCCTTCATCCTGGGAGAAAGAACAGATCAGCAGCAGAACCAGAAAATGTTaGCTAACCAAAGAAAAGGCA +
Preference number: 4 (lower is better)
Translates to: GKPRAEKPSSWEKEQISSRTRKC*LTKEKA
Trigger: TGCCTTTTCTTTGGTTAGTCAACATTTTCTGGTTCT...GCTGCTGATCTGTTCTTTCTCCCAGGATGAAGGCTTCTCTGCTCTAGGCTTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043898.8
ENSMUST00000207747.2
CDS-3UTR TCA 90 bp GTTAGGGTCCTTTATTGGGGCAGATGGGAAATGAGAAACAGATGTCTTCAGGGTAGAACCAGAAAATGTTaGCTAACCAAAGAAAAGGCA +
Preference number: 4 (lower is better)
Translates to: VRVLYWGRWEMRNRCLQGRTRKC*LTKEKA
Trigger: TGCCTTTTCTTTGGTTAGTCAACATTTTCTGGTTCT...ACCCTGAAGACATCTGTTTCTCATTTCCCATCTGCCCCAATAAAGGACCCTAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043898.8
ENSMUST00000207747.2
CDS-3UTR CAA 90 bp TCTTCAGGGTCTGAGGGAAAGCCTAGAGCAGAGAAGCCTTCATCCTGGGAGAAATTCAACTTCTCCTCATaGGATACCCGCTCCAAGTTC +
Preference number: 5 (lower is better)
Translates to: SSGSEGKPRAEKPSSWEKFNFSS*DTRSKF
Trigger: GAACTTGGAGCGGGTATCCAATGAGGAGAAGTTGAA...TTTCTCCCAGGATGAAGGCTTCTCTGCTCTAGGCTTTCCCTCAGACCCTGAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043898.8
ENSMUST00000207747.2
CDS-3UTR CAA 90 bp AGCCTAGAGCAGAGAAGCCTTCATCCTGGGAGAAAGAACAGATCAGCAGCTTATTTCAACTTCTCCTCATaGGATACCCGCTCCAAGTTC +
Preference number: 5 (lower is better)
Translates to: SLEQRSLHPGRKNRSAAYFNFSS*DTRSKF
Trigger: GAACTTGGAGCGGGTATCCAATGAGGAGAAGTTGAA...ATAAGCTGCTGATCTGTTCTTTCTCCCAGGATGAAGGCTTCTCTGCTCTAGGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043898.8
ENSMUST00000207747.2
CDS-3UTR CAA 90 bp GAGCAGAGAAGCCTTCATCCTGGGAGAAAGAACAGATCAGCAGCTTATGAAGTTAACATAGCCTTTGATTaGGCTCTGCTCTGTGTAGGC +
Preference number: 5 (lower is better)
Translates to: EQRSLHPGRKNRSAAYEVNIAFD*ALLCVG
Trigger: GCCTACACAGAGCAGAGCCAAATCAAAGGCTATGTT...AACTTCATAAGCTGCTGATCTGTTCTTTCTCCCAGGATGAAGGCTTCTCTGCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043898.8
ENSMUST00000207747.2
CDS-3UTR CAA 90 bp GAGGGAAAGCCTAGAGCAGAGAAGCCTTCATCCTGGGAGAAAGAACAGATCAGCAAGAACCAGAAAATGTaGACTAACCAAAGAAAAGGC +
Preference number: 5 (lower is better)
Translates to: EGKPRAEKPSSWEKEQISKNQKM*TNQRKG
Trigger: GCCTTTTCTTTGGTTAGTCAACATTTTCTGGTTCTT...GCTGATCTGTTCTTTCTCCCAGGATGAAGGCTTCTCTGCTCTAGGCTTTCCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043898.8
ENSMUST00000207747.2
CDS-3UTR CAA 90 bp AGCCTAGAGCAGAGAAGCCTTCATCCTGGGAGAAAGAACAGATCAGCAGCTTATAAGAACCAGAAAATGTaGACTAACCAAAGAAAAGGC +
Preference number: 5 (lower is better)
Translates to: SLEQRSLHPGRKNRSAAYKNQKM*TNQRKG
Trigger: GCCTTTTCTTTGGTTAGTCAACATTTTCTGGTTCTT...ATAAGCTGCTGATCTGTTCTTTCTCCCAGGATGAAGGCTTCTCTGCTCTAGGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043898.8
ENSMUST00000207747.2
CDS TCA 72 bp GGCGAGAATGATCACCCAGAAGAGGAAGCCCACAGCTaGGCGCCAAACATAGCCTTTGATTTGGCTCTGCTC +
Preference number: 6 (lower is better)
Translates to: GENDHPEEEAHS*APNIAFDLALL
Trigger: GAGCAGAGCCAAATCAAAGGCTATGTTTGGCGCTCAGCTGTGGGCTTCCTCTTCTGGGTGATCATTCTCGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043898.8
ENSMUST00000207747.2
ENSMUST00000208628.2
CDS TCA 72 bp GGCGAGAATGATCACCCAGAAGAGGAAGCCCACAGCTaGGCGCCAAACATCAAGATAGTACTTCCGGCACAG +
Preference number: 6 (lower is better)
Translates to: GENDHPEEEAHS*APNIKIVLPAQ
Trigger: CTGTGCCGGAAGTACTATCTTGATGTTTGGCGCTCAGCTGTGGGCTTCCTCTTCTGGGTGATCATTCTCGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207031.2