RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PSD (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037126

Ensembl transcript IDs: ENSMUST00000041391.5, ENSMUST00000096029.12, ENSMUST00000224447.2, ENSMUST00000224556.2, ENSMUST00000225323.2, ENSMUST00000225781.2

Found 463 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp CCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTCCGTGTATGTCATCATaGAGGTGCCCAGCGGGCACT +
Preference number: 2 (lower is better)
Translates to: PGHRVRRGRALDQEALVAPCMSS*RCPAGT
Trigger: AGTGCCCGCTGGGCACCTGCATGATGACATACACGG...AGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
3UTR-3UTR TCA 90 bp GCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTTGGCCCGAGGCTAGCTaGGCTCAGGCAGGACCGTGT +
Preference number: 2 (lower is better)
Translates to: AGRATPACGWGLKVDALPWPEAS*AQAGPC
Trigger: ACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCA...AGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
3UTR-3UTR GCA 90 bp GCCCACCAAAGAAGGGAAGCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCATGTCATCATGCAGGTaGCCAGCGGGCACTGCCCCC +
Preference number: 2 (lower is better)
Translates to: AHQRREAGRATPACGWGLMSSCR*PAGTAP
Trigger: GGGGGCAGTGCCCGCTGGGCACCTGCATGATGACAT...GAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGCTTCCCTTCTTTGGTGGGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
3UTR-3UTR TCA 90 bp CAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCCAAAAAGGGGGTCTCTaGGAGGCCCTCAGCCTAGGC +
Preference number: 2 (lower is better)
Translates to: QAVPPQPVDGASKWMPFLQKGGL*EALSLG
Trigger: GCCTAGGCTGAGGGCCTCTCAGAGACCCCCTTTTTG...GAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
3UTR-3UTR CCA 90 bp GGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGCTCAGCCCCAACTCCTaGCTTCTGTCTGAGCCAGGC +
Preference number: 2 (lower is better)
Translates to: GRATPACGWGLKVDALPLLSPNS*LLSEPG
Trigger: GCCTGGCTCAGACAGAAGCCAGGAGTTGGGGCTGAG...CAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
3UTR-3UTR CCA 90 bp GCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTAGAGAGGTGAGCCCTTaGGGAGGAATAGGGGGACCA +
Preference number: 2 (lower is better)
Translates to: AGRATPACGWGLKVDALPREVSP*GGIGGP
Trigger: TGGTCCCCCTATTCCTCCCCAAGGGCTCACCTCTCT...AGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
3UTR-3UTR TCA 90 bp ATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGTGAGCCCTCAGCCTAGGCTCTaGGGCCCGGCTCAGCCCTGC +
Preference number: 2 (lower is better)
Translates to: MGPQSGCPSSVSAKREVSPQPRL*GPAQPC
Trigger: GCAGGGCTGAGCCGGGCCTCAGAGCCTAGGCTGAGG...GCTCACCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
3UTR-3UTR CCA 90 bp TGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTAGCCAGGCCCCAGGATaGAGGGGTGTTGCTGGTGTA +
Preference number: 2 (lower is better)
Translates to: CHPSLWMGPQSGCPSSVSSQAPG*RGVAGV
Trigger: TACACCAGCAACACCCCTCCATCCTGGGGCCTGGCT...AGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
3UTR-3UTR GCA 90 bp AGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAATGTCATCATGCAGGTaGCCAGCGGGCACTGCCCCC +
Preference number: 2 (lower is better)
Translates to: SLWMGPQSGCPSSVSAKRMSSCR*PAGTAP
Trigger: GGGGGCAGTGCCCGCTGGGCACCTGCATGATGACAT...TCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
3UTR-3UTR CCA 90 bp ATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGTGAGCCTCAGCCCCAACTCCTaGCTTCTGTCTGAGCCAGGC +
Preference number: 2 (lower is better)
Translates to: MGPQSGCPSSVSAKREVSLSPNS*LLSEPG
Trigger: GCCTGGCTCAGACAGAAGCCAGGAGTTGGGGCTGAG...GCTCACCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
3UTR-3UTR CCA 90 bp TGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGCTCAGCCCCAACTCCTaGCTTCTGTCTGAGCCAGGC +
Preference number: 2 (lower is better)
Translates to: CGWGLKVDALPLSLQRERLSPNS*LLSEPG
Trigger: GCCTGGCTCAGACAGAAGCCAGGAGTTGGGGCTGAG...CCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
3UTR-3UTR GCA 90 bp AGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGACCGTGTATGTCATCATaGAGGTGCCCAGCGGGCACT +
Preference number: 2 (lower is better)
Translates to: SLWMGPQSGCPSSVSAKRPCMSS*RCPAGT
Trigger: AGTGCCCGCTGGGCACCTGCATGATGACATACACGG...TCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
3UTR-3UTR GCA 90 bp ATTCAGAGCAGTTTTAATGAGGGTGGAGGCTGTACAAAGGGTAGGGCCCACCAACCGTGTATGTCATCATaGAGGTGCCCAGCGGGCACT +
Preference number: 2 (lower is better)
Translates to: IQSSFNEGGGCTKGRAHQPCMSS*RCPAGT
Trigger: AGTGCCCGCTGGGCACCTGCATGATGACATACACGG...TTGGTGGGCCCTACCCTTTGTACAGCCTCCACCCTCATTAAAACTGCTCTGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
3UTR-3UTR CAA 90 bp GCCCACCAAAGAAGGGAAGCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCGAGAGAGGTGAGCCCTaGGGGAGGAATAGGGGGACC +
Preference number: 3 (lower is better)
Translates to: AHQRREAGRATPACGWGLERGEP*GRNRGT
Trigger: GGTCCCCCTATTCCTCCCCAAGGGCTCACCTCTCTC...GAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGCTTCCCTTCTTTGGTGGGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
3UTR TCA 72 bp GGACCAGGAGGCCCTCGTGGCTGGCCCGAGGCTAGCTaGGCTCAGGCAGGACCGTGTATGTCATCATGCAGG +
Preference number: 3 (lower is better)
Translates to: GPGGPRGWPEAS*AQAGPCMSSCR
Trigger: CCTGCATGATGACATACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTCCTGGTCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
3UTR-3UTR CAA 90 bp CAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCGCAGAAAGCAGAAACTaGATCAGGCCTCCCCCACGA +
Preference number: 3 (lower is better)
Translates to: QAVPPQPVDGASKWMPFLAESRN*IRPPPR
Trigger: TCGTGGGGGAGGCCTGATCAAGTTTCTGCTTTCTGC...GAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
3UTR CCA 72 bp AGAAGGGAAGCAGGCCGTGCCACCCCAGCCTGTGGATaGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTG +
Preference number: 3 (lower is better)
Translates to: RREAGRATPACG*GLKVDALPLSL
Trigger: CAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGCTTCCCTTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
3UTR CCA 72 bp CCAAAGAAGGGAAGCAGGCCGTGCCACCCCAGCCTGTaGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTC +
Preference number: 3 (lower is better)
Translates to: PKKGSRPCHPSL*MGPQSGCPSSV
Trigger: GACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGCTTCCCTTCTTTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
3UTR CCA 72 bp CCAACTCCTGGCTTCTGTCTGAGCCAGGCCCCAGGATaGAGGGGTGTTGCTGGTGTAAGGGTGAGGTGGTCT +
Preference number: 3 (lower is better)
Translates to: PTPGFCLSQAPG*RGVAGVRVRWS
Trigger: AGACCACCTCACCCTTACACCAGCAACACCCCTCCATCCTGGGGCCTGGCTCAGACAGAAGCCAGGAGTTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
3UTR GCA 72 bp TGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATaGCCTTCCTCTGTCTCTGCAAAGAGAGAGGTGAGC +
Preference number: 3 (lower is better)
Translates to: CHPSLWMGPQSG*PSSVSAKREVS
Trigger: GCTCACCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
3UTR-3UTR CAA 90 bp GCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGTGAGCCCTTGGCAGAAAGCAGAAACTaGATCAGGCCTCCCCCACGA +
Preference number: 3 (lower is better)
Translates to: ASKWMPFLCLCKERGEPLAESRN*IRPPPR
Trigger: TCGTGGGGGAGGCCTGATCAAGTTTCTGCTTTCTGC...CAAGGGCTCACCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR CCA 90 bp CCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTAGGCATGTGGTCCCCTaGCCGGGCCCCCTCCGAGGC +
Preference number: 4 (lower is better)
Translates to: PGHRVRRGRALDQEALVARHVVP*PGPLRG
Trigger: GCCTCGGAGGGGGCCCGGCCAGGGGACCACATGCCT...AGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGG
78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp TGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGCCCGGGGCTGGCTGGTaGGCTTGGGCCGCAGGGAAG +
Preference number: 4 (lower is better)
Translates to: CPGHRVRRGRALDQEALVPGAGW*AWAAGK
Trigger: CTTCCCTGCGGCCCAAGCCCACCAGCCAGCCCCGGG...CACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCA
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGCCCGGGGCTGGCTGGTaGGCTTGGGCCGCAGGGAAG +
Preference number: 4 (lower is better)
Translates to: PDTASGAVGPWTRRPSWLPGAGW*AWAAGK
Trigger: CTTCCCTGCGGCCCAAGCCCACCAGCCAGCCCCGGG...CAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp CCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGTCAGGCCCATCCGCTaGGGGGCTGGTCCCAAGCAG +
Preference number: 4 (lower is better)
Translates to: PGHRVRRGRALDQEALVAVRPIR*GAGPKQ
Trigger: CTGCTTGGGACCAGCCCCTCAGCGGATGGGCCTGAC...AGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp TGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGGCAAGTGGGGCAGGTaGAGGTGGGTCAGGCCTGGG +
Preference number: 4 (lower is better)
Translates to: CPGHRVRRGRALDQEALVGKWGR*RWVRPG
Trigger: CCCAGGCCTGACCCACCTGCACCTGCCCCACTTGCC...CACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCA
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp TGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGGCATCCATCCTCCGTaGTCCCAGCCTGGGCCAGGG +
Preference number: 4 (lower is better)
Translates to: CPGHRVRRGRALDQEALVGIHPP*SQPGPG
Trigger: CCCTGGCCCAGGCTGGGAGCACGGAGGATGGATGCC...CACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCA
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp CTCAGCCCTGCCCTGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGCATCCATCCTCCGTaGTCCCAGCCTGGGCCAGGG +
Preference number: 4 (lower is better)
Translates to: LSPALPRTPRPARSGPGPGIHPP*SQPGPG
Trigger: CCCTGGCCCAGGCTGGGAGCACGGAGGATGGATGCC...TGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCAGGGCAGGGCTGAG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp TGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGGGACTTTGGGGCACTaGGCCTTCGGGGAGCCAGCG +
Preference number: 4 (lower is better)
Translates to: CPGHRVRRGRALDQEALVGTLGH*AFGEPA
Trigger: CGCTGGCTCCCCGAAGGCCCAGTGCCCCAAAGTCCC...CACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCA
76% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CTCAGCCCTGCCCTGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCACGTGAGGCAGGTGGTTaGGCAGTGCCATGGGGGCCC +
Preference number: 4 (lower is better)
Translates to: LSPALPRTPRPARSGPGPREAGG*AVPWGP
Trigger: GGGCCCCCATGGCACTGCCCAACCACCTGCCTCACG...TGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCAGGGCAGGGCTGAG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTTGGGGCAGGTGCAGGTaGGTCAGGCCTGGGAGCTGG +
Preference number: 4 (lower is better)
Translates to: PGHRVRRGRALDQEALVAWGRCR*VRPGSW
Trigger: CCAGCTCCCAGGCCTGACCCACCTGCACCTGCCCCA...AGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGGGCTGGCTGGTGGGCTTaGGCCGCAGGGAAGGACTGG +
Preference number: 4 (lower is better)
Translates to: RTPRPARSGPGPGGPRGWAGWWA*AAGKDW
Trigger: CCAGTCCTTCCCTGCGGCCCAAGCCCACCAGCCAGC...CCAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCG
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp CCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGCCCCTGGTGGAGGCTaGCCAGTGGGTGAAGAGGGT +
Preference number: 4 (lower is better)
Translates to: PGHRVRRGRALDQEALVAAPGGG*PVGEEG
Trigger: ACCCTCTTCACCCACTGGGCAGCCTCCACCAGGGGC...AGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp AGCCCTGCCCTGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGACAGGTGGTTGGGCAGTaGCATGGGGGCCCTCAGAGC +
Preference number: 4 (lower is better)
Translates to: SPALPRTPRPARSGPGPGQVVGQ*HGGPQS
Trigger: GCTCTGAGGGCCCCCATGGCACTGCCCAACCACCTG...TCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCAGGGCAGGGCT
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGGCCGGCCTCGAGGACCTaGGCCCACCACTCGTCGTAT +
Preference number: 4 (lower is better)
Translates to: RTPRPARSGPGPGGPRGWPASRT*AHHSSY
Trigger: ATACGACGAGTGGTGGGCCCAGGTCCTCGAGGCCGG...CCAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGTGGAGGCTGCCCAGTaGGTGAAGAGGGTCCCCAGG +
Preference number: 4 (lower is better)
Translates to: PGHRVRRGRALDQEALVAVEAAQ*VKRVPR
Trigger: CCTGGGGACCCTCTTCACCCACTGGGCAGCCTCCAC...AGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGGTCCAAGGGCTGGGGTaGGCCTGGGGGCAGAAATCC +
Preference number: 4 (lower is better)
Translates to: PDTASGAVGPWTRRPSWLVQGLG*AWGQKS
Trigger: GGATTTCTGCCCCCAGGCCCACCCCAGCCCTTGGAC...CAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGGAGGAAGCTCCTTCCTTaGGGCCAGCGTGGCCCCAGC +
Preference number: 4 (lower is better)
Translates to: RTPRPARSGPGPGGPRGWRKLLP*GQRGPS
Trigger: GCTGGGGCCACGCTGGCCCCAAGGAAGGAGCTTCCT...CCAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGAGGAAGCTCCTTCCTTaGGGCCAGCGTGGCCCCAGC +
Preference number: 4 (lower is better)
Translates to: PDTASGAVGPWTRRPSWLRKLLP*GQRGPS
Trigger: GCTGGGGCCACGCTGGCCCCAAGGAAGGAGCTTCCT...CAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTCTCACCTGCTCCTCCTaGGAGAGGCGGGTGGCAGCA +
Preference number: 4 (lower is better)
Translates to: PGHRVRRGRALDQEALVALTCSS*ERRVAA
Trigger: TGCTGCCACCCGCCTCTCCCAGGAGGAGCAGGTGAG...AGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp TGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCCGCAGGGAAGGACTaGAGTGAGGCGGAGGGCATC +
Preference number: 4 (lower is better)
Translates to: CPGHRVRRGRALDQEALVAAGKD*SEAEGI
Trigger: GATGCCCTCCGCCTCACTCCAGTCCTTCCCTGCGGC...CACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGGGCCGCAGGGAAGGACTaGAGTGAGGCGGAGGGCATC +
Preference number: 4 (lower is better)
Translates to: RTPRPARSGPGPGGPRGWAAGKD*SEAEGI
Trigger: GATGCCCTCCGCCTCACTCCAGTCCTTCCCTGCGGC...CCAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp AGCCCTGCCCTGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGCACAGGTCAGCGTGTaGGCACCGTCCTCTGAGGAC +
Preference number: 4 (lower is better)
Translates to: SPALPRTPRPARSGPGPGAQVSV*APSSED
Trigger: GTCCTCAGAGGACGGTGCTCACACGCTGACCTGTGC...TCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCAGGGCAGGGCT
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp TGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGAGGGAAGGACTGGAGTaGGGCGGAGGGCATCCATCC +
Preference number: 4 (lower is better)
Translates to: CPGHRVRRGRALDQEALVREGLE*GGGHPS
Trigger: GGATGGATGCCCTCCGCCTCACTCCAGTCCTTCCCT...CACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCA
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp CGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGGGCCGCAACTTCCGGTTaGAGCCAGGTCCAAGGGCTG +
Preference number: 4 (lower is better)
Translates to: RTPRPARSGPGPGGPRGWAATSG*SQVQGL
Trigger: CAGCCCTTGGACCTGGCTGCAACCGGAAGTTGCGGC...CCAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCG
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp TGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGGGCCAGCCGCTCTGTaGTGTCCAGCTCTGAGTCTG +
Preference number: 4 (lower is better)
Translates to: CPGHRVRRGRALDQEALVGPAAL*CPALSL
Trigger: CAGACTCAGAGCTGGACAGCACAGAGCGGCTGGCCC...CACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCA
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp CGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGGAGCCTGGGCCAGGGCTaGCTCTATGGTGTCCAGCTC +
Preference number: 4 (lower is better)
Translates to: RTPRPARSGPGPGGPRGWSLGQG*LYGVQL
Trigger: GAGCTGGACACCATAGAGGCAGCCCTGGCCCAGGCT...CCAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCG
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp TGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGAGCCTGGGCCAGGGCTaGCTCTATGGTGTCCAGCTC +
Preference number: 4 (lower is better)
Translates to: CPGHRVRRGRALDQEALVSLGQG*LYGVQL
Trigger: GAGCTGGACACCATAGAGGCAGCCCTGGCCCAGGCT...CACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCA
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CTCAGCCCTGCCCTGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGTCCTCGGAAGTGCATaGCCAGGTGCTCAGGGGTCC +
Preference number: 4 (lower is better)
Translates to: LSPALPRTPRPARSGPGPVLGSA*PGAQGS
Trigger: GGACCCCTGAGCACCTGGCCATGCACTTCCGAGGAC...TGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCAGGGCAGGGCTGAG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGGGGGGGCCCTCAGAGCTaGGCTGACTCTCAATGGCAG +
Preference number: 4 (lower is better)
Translates to: RTPRPARSGPGPGGPRGWGGPQS*ADSQWQ
Trigger: CTGCCATTGAGAGTCAGCCCAGCTCTGAGGGCCCCC...CCAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCG
73% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CTCAGCCCTGCCCTGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCACCCTTGAGGATCCCGTaGAAGCTCTTCCAGCCCCGC +
Preference number: 4 (lower is better)
Translates to: LSPALPRTPRPARSGPGPPLRIP*KLFQPR
Trigger: GCGGGGCTGGAAGAGCTTCCACGGGATCCTCAAGGG...TGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCAGGGCAGGGCTGAG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp CCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGCCCTCAGAGCTGGGCTaGCTCTCAATGGCAGAGTCG +
Preference number: 4 (lower is better)
Translates to: PDTASGAVGPWTRRPSWLPSELG*LSMAES
Trigger: CGACTCTGCCATTGAGAGTCAGCCCAGCTCTGAGGG...CAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp TGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGCGTGGCCCCAGCATCTaGCTCTTCCACCTCCCTTCT +
Preference number: 4 (lower is better)
Translates to: CPGHRVRRGRALDQEALVRGPSI*LFHLPS
Trigger: AGAAGGGAGGTGGAAGAGTCAGATGCTGGGGCCACG...CACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp CTCAGCCCTGCCCTGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCACACGTGAGGGGTCCCTaGTGCCAGGAAGAACAGAGC +
Preference number: 4 (lower is better)
Translates to: LSPALPRTPRPARSGPGPHVRGP*CQEEQS
Trigger: GCTCTGTTCTTCCTGGCAGCAGGGACCCCTCACGTG...TGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCAGGGCAGGGCTGAG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp CGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGGCACGTGAGGGGTCCCTaGTGCCAGGAAGAACAGAGC +
Preference number: 4 (lower is better)
Translates to: RTPRPARSGPGPGGPRGWHVRGP*CQEEQS
Trigger: GCTCTGTTCTTCCTGGCAGCAGGGACCCCTCACGTG...CCAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp CGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGGGGAGTAAAGCCCATCTaGCCCGATCTGGGGTGGGAC +
Preference number: 4 (lower is better)
Translates to: RTPRPARSGPGPGGPRGWGVKPI*PDLGWD
Trigger: GTCCCACCCCAGATCGGGGCAGATGGGCTTTACTCC...CCAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp CTCAGCCCTGCCCTGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGTAAAGCCCATCTaGCCCGATCTGGGGTGGGAC +
Preference number: 4 (lower is better)
Translates to: LSPALPRTPRPARSGPGPGVKPI*PDLGWD
Trigger: GTCCCACCCCAGATCGGGGCAGATGGGCTTTACTCC...TGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCAGGGCAGGGCTGAG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp TGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGTGCTTGTAGACAGCTaGCCCGGGCTCAGGAGTCAG +
Preference number: 4 (lower is better)
Translates to: CPGHRVRRGRALDQEALVVLVDS*PGLRSQ
Trigger: CTGACTCCTGAGCCCGGGGCAGCTGTCTACAAGCAC...CACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp CTCAGCCCTGCCCTGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCACCTGCAGTCAGGGTCTaGGTGCACCTTTCGCACCAG +
Preference number: 4 (lower is better)
Translates to: LSPALPRTPRPARSGPGPPAVRV*VHLSHQ
Trigger: CTGGTGCGAAAGGTGCACGCAGACCCTGACTGCAGG...TGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCAGGGCAGGGCTGAG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp CTCAGCCCTGCCCTGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCATTCTTCTTGCGGCTCTaGAGGCGGCTGACCACCAGG +
Preference number: 4 (lower is better)
Translates to: LSPALPRTPRPARSGPGPFFLRL*RRLTTR
Trigger: CCTGGTGGTCAGCCGCCTGCAGAGCCGCAAGAAGAA...TGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCAGGGCAGGGCTGAG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224556.2
CDS-3UTR CCA 90 bp CTCAGCCCTGCCCTGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAACGAGGACATCGTGGTaGGGAGATGGCACAGTCGCC +
Preference number: 4 (lower is better)
Translates to: LSPALPRTPRPARSGPGPTRTSW*GDGTVA
Trigger: GGCGACTGTGCCATCTCCCCACCACGATGTCCTCGT...TGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCAGGGCAGGGCTGAG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp TGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGCTGTCTCGGAGTACTTaGCTGCTCGCCCCACAGCCA +
Preference number: 4 (lower is better)
Translates to: CPGHRVRRGRALDQEALVLSRST*LLAPQP
Trigger: TGGCTGTGGGGCGAGCAGCCAAGTACTCCGAGACAG...CACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp AGCCCTGCCCTGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGACTGTCTCGGAGTACTTaGCTGCTCGCCCCACAGCCA +
Preference number: 4 (lower is better)
Translates to: SPALPRTPRPARSGPGPGLSRST*LLAPQP
Trigger: TGGCTGTGGGGCGAGCAGCCAAGTACTCCGAGACAG...TCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCAGGGCAGGGCT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGGTGGGCTGACTCTCAATaGCAGAGTCGGCCTCCTCCC +
Preference number: 4 (lower is better)
Translates to: RTPRPARSGPGPGGPRGWWADSQ*QSRPPP
Trigger: GGGAGGAGGCCGACTCTGCCATTGAGAGTCAGCCCA...CCAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp AGCCCTGCCCTGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGATGCCACTGCCCAGACTaGAAGAAGGGCCAGGGCATG +
Preference number: 4 (lower is better)
Translates to: SPALPRTPRPARSGPGPGCHCPD*KKGQGM
Trigger: CATGCCCTGGCCCTTCTTCCAGTCTGGGCAGTGGCA...TCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCAGGGCAGGGCT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGTCCTTGGGGCCAGCGTaGCCCCAGCATCTGACTCTT +
Preference number: 4 (lower is better)
Translates to: PDTASGAVGPWTRRPSWLSLGPA*PQHLTL
Trigger: AAGAGTCAGATGCTGGGGCCACGCTGGCCCCAAGGA...CAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGGACACGCTCCCGCTCCTaGGTCTCACCCATTAAGGCC +
Preference number: 4 (lower is better)
Translates to: RTPRPARSGPGPGGPRGWTRSRS*VSPIKA
Trigger: GGCCTTAATGGGTGAGACCCAGGAGCGGGAGCGTGT...CCAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGACACGCTCCCGCTCCTaGGTCTCACCCATTAAGGCC +
Preference number: 4 (lower is better)
Translates to: PDTASGAVGPWTRRPSWLTRSRS*VSPIKA
Trigger: GGCCTTAATGGGTGAGACCCAGGAGCGGGAGCGTGT...CAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp TGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGTATCGCTGGGAGAAGTaGGCCAGTACACGCTCCCGC +
Preference number: 4 (lower is better)
Translates to: CPGHRVRRGRALDQEALVYRWEK*ASTRSR
Trigger: GCGGGAGCGTGTACTGGCCCACTTCTCCCAGCGATA...CACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp CCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGTGAGCACCGTCCTCTaGGGACAGGGCTTCAGGATT +
Preference number: 4 (lower is better)
Translates to: PGHRVRRGRALDQEALVAVSTVL*GQGFRI
Trigger: AATCCTGAAGCCCTGTCCTCAGAGGACGGTGCTCAC...AGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp AGCCCTGCCCTGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGTGAGCACCGTCCTCTaGGGACAGGGCTTCAGGATT +
Preference number: 4 (lower is better)
Translates to: SPALPRTPRPARSGPGPGVSTVL*GQGFRI
Trigger: AATCCTGAAGCCCTGTCCTCAGAGGACGGTGCTCAC...TCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCAGGGCAGGGCT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp CTCAGCCCTGCCCTGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAAGTCGCCACCATCATTaGGGCCCTCCAGGTTTCCGA +
Preference number: 4 (lower is better)
Translates to: LSPALPRTPRPARSGPGPSRHHH*GPPGFR
Trigger: TCGGAAACCTGGAGGGCCTCAATGATGGTGGCGACT...TGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCAGGGCAGGGCTGAG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp TGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGAGAGCCTTCCCAGGCTaGTACTCCTCCTTCTGCAGG +
Preference number: 4 (lower is better)
Translates to: CPGHRVRRGRALDQEALVRAFPG*YSSFCR
Trigger: CCTGCAGAAGGAGGAGTATCAGCCTGGGAAGGCTCT...CACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp TGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGGCTACTATAGGAGGTaGCCTTGGCCCGGTGTGACT +
Preference number: 4 (lower is better)
Translates to: CPGHRVRRGRALDQEALVGYYRR*PWPGVT
Trigger: AGTCACACCGGGCCAAGGGCACCTCCTATAGTAGCC...CACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp CCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGGGCTACTATAGGAGGTaGCCTTGGCCCGGTGTGACT +
Preference number: 4 (lower is better)
Translates to: PDTASGAVGPWTRRPSWLGYYRR*PWPGVT
Trigger: AGTCACACCGGGCCAAGGGCACCTCCTATAGTAGCC...CAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp CGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGGCTTGCCCAGATGCCGTaGCACATCGGCCTTCCTGAA +
Preference number: 4 (lower is better)
Translates to: RTPRPARSGPGPGGPRGWLAQMP*HIGLPE
Trigger: TTCAGGAAGGCCGATGTGGCACGGCATCTGGGCAAG...CCAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp CCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGCACGAGGTGTCTTCCTaGAGTCAGGGTCTGCGTGCA +
Preference number: 4 (lower is better)
Translates to: PDTASGAVGPWTRRPSWLHEVSS*SQGLRA
Trigger: TGCACGCAGACCCTGACTGCAGGAAGACACCTCGTG...CAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp TGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGCACGAGGTGTCTTCCTaGAGTCAGGGTCTGCGTGCA +
Preference number: 4 (lower is better)
Translates to: CPGHRVRRGRALDQEALVHEVSS*SQGLRA
Trigger: TGCACGCAGACCCTGACTGCAGGAAGACACCTCGTG...CACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CTCAGCCCTGCCCTGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGTCGGTATAGCCTCTTaGCTAGGCGCTGTGCAGCCT +
Preference number: 4 (lower is better)
Translates to: LSPALPRTPRPARSGPGPVGIAS*LGAVQP
Trigger: AGGCTGCACAGCGCCTAGCCAAGAGGCTATACCGAC...TGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCAGGGCAGGGCTGAG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CTCAGCCCTGCCCTGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCACGGGTAGCCAGGGCGTaGTGGATGCTGATAGCATTC +
Preference number: 4 (lower is better)
Translates to: LSPALPRTPRPARSGPGPRVARA*WMLIAF
Trigger: GAATGCTATCAGCATCCACCACGCCCTGGCTACCCG...TGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCAGGGCAGGGCTGAG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGCCATGGCCTTCAGCTTaGCCTCATGGGTCCTCACCT +
Preference number: 4 (lower is better)
Translates to: PDTASGAVGPWTRRPSWLPWPSA*PHGSSP
Trigger: AGGTGAGGACCCATGAGGCCAAGCTGAAGGCCATGG...CAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGTCAGCTCGCTGGCCATaGCCTTCAGCTTGGCCTCAT +
Preference number: 4 (lower is better)
Translates to: PDTASGAVGPWTRRPSWLSARWP*PSAWPH
Trigger: ATGAGGCCAAGCTGAAGGCCATGGCCAGCGAGCTGA...CAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp CCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTAGGGTACTGGTGACTTaGGAAGCCCAGAGTGAGGCA +
Preference number: 4 (lower is better)
Translates to: PGHRVRRGRALDQEALVARVLVT*EAQSEA
Trigger: TGCCTCACTCTGGGCTTCTCAAGTCACCAGTACCCT...AGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp CGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGGGCCCTTGGCCCGGTGTaGCTCCAAGATAGCTTCAAA +
Preference number: 4 (lower is better)
Translates to: RTPRPARSGPGPGGPRGWALGPV*LQDSFK
Trigger: TTTGAAGCTATCTTGGAGTCACACCGGGCCAAGGGC...CCAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp CGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGGGAGTCGGATACCAGCTaGCTTAGGGGTGGTTCACTG +
Preference number: 4 (lower is better)
Translates to: RTPRPARSGPGPGGPRGWESDTS*LRGGSL
Trigger: CAGTGAACCACCCCTAAGTCAGCTGGTATCCGACTC...CCAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp AGCCCTGCCCTGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAAGAGGATCATGCCCTTaGGGATCCCGTGGAAGCTCT +
Preference number: 4 (lower is better)
Translates to: SPALPRTPRPARSGPGPGRGSCP*GSRGSS
Trigger: AGAGCTTCCACGGGATCCTCAAGGGCATGATCCTCT...TCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCAGGGCAGGGCT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp TGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGTTGTTCTTGCCCAGATaGCGTGCCACATCGGCCTTC +
Preference number: 4 (lower is better)
Translates to: CPGHRVRRGRALDQEALVLFLPR*RATSAF
Trigger: GAAGGCCGATGTGGCACGGCATCTGGGCAAGAACAA...CACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp TGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGCGAGTGATCCAGGACTaGATTTGCTCCAGGCTCGGA +
Preference number: 4 (lower is better)
Translates to: CPGHRVRRGRALDQEALVRVIQD*ICSRLG
Trigger: TCCGAGCCTGGAGCAAATGCAGTCCTGGATCACTCG...CACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp CCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTCTTGACTCGAAGCAGTaGTGCATAGGTGCCGTAGCG +
Preference number: 4 (lower is better)
Translates to: PGHRVRRGRALDQEALVALDSKQ*CIGAVA
Trigger: CGCTACGGCACCTATGCAGCACTGCTTCGAGTCAAG...AGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGGGGAGTGGGTCTGATGTaGATGCCTCTAGCCGCAACT +
Preference number: 4 (lower is better)
Translates to: RTPRPARSGPGPGGPRGWGVGLM*MPLAAT
Trigger: AGTTGCGGCTAGAGGCATCCACATCAGACCCACTCC...CCAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGGGAGTGGGTCTGATGTaGATGCCTCTAGCCGCAACT +
Preference number: 4 (lower is better)
Translates to: PDTASGAVGPWTRRPSWLGVGLM*MPLAAT
Trigger: AGTTGCGGCTAGAGGCATCCACATCAGACCCACTCC...CAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp CTCAGCCCTGCCCTGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCACTTCAAACACACAACTaGAGGAGTCAGGCCCATCCG +
Preference number: 4 (lower is better)
Translates to: LSPALPRTPRPARSGPGPLQTHN*RSQAHP
Trigger: CGGATGGGCCTGACTCCTTCAGTTGTGTGTTTGAAG...TGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCAGGGCAGGGCTGAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp CAGGAGGCCCTCGTGGCTGGCCCGAGGCTAGCTGAGCTCAGGCAGGACCGTGTAGGCAAGTGGGGCAGGTaGAGGTGGGTCAGGCCTGGG +
Preference number: 4 (lower is better)
Translates to: QEALVAGPRLAELRQDRVGKWGR*RWVRPG
Trigger: CCCAGGCCTGACCCACCTGCACCTGCCCCACTTGCC...TACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTCCTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CAGGAGGCCCTCGTGGCTGGCCCGAGGCTAGCTGAGCTCAGGCAGGACCGTGTAGGGACTTTGGGGCACTaGGCCTTCGGGGAGCCAGCG +
Preference number: 4 (lower is better)
Translates to: QEALVAGPRLAELRQDRVGTLGH*AFGEPA
Trigger: CGCTGGCTCCCCGAAGGCCCAGTGCCCCAAAGTCCC...TACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTCCTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp AGCCCTGCCCTGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGATCAGTGGCCTCACACTaGCCTTCTCCACAAAACGGA +
Preference number: 4 (lower is better)
Translates to: SPALPRTPRPARSGPGPGSVASH*PSPQNG
Trigger: TCCGTTTTGTGGAGAAGGCCAGTGTGAGGCCACTGA...TCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCAGGGCAGGGCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp AGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGAGGCATGTGGTCCCCTaGCCGGGCCCCCTCCGAGGC +
Preference number: 4 (lower is better)
Translates to: RQDRVCHHAGAQRALPPSRHVVP*PGPLRG
Trigger: GCCTCGGAGGGGGCCCGGCCAGGGGACCACATGCCT...CGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp AGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCCCGGGGCTGGCTGGTaGGCTTGGGCCGCAGGGAAG +
Preference number: 4 (lower is better)
Translates to: RQDRVCHHAGAQRALPPSPGAGW*AWAAGK
Trigger: CTTCCCTGCGGCCCAAGCCCACCAGCCAGCCCCGGG...CGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp TGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGATCCTCTTCACCTCCTaGCTCATCATCTTCGTTGCC +
Preference number: 4 (lower is better)
Translates to: CPGHRVRRGRALDQEALVILFTS*LIIFVA
Trigger: GGCAACGAAGATGATGAGGCAGGAGGTGAAGAGGAT...CACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp GAGGCCCTCGTGGCTGGCCCGAGGCTAGCTGAGCTCAGGCAGGACCGTGTATGTGGCATCCATCCTCCGTaGTCCCAGCCTGGGCCAGGG +
Preference number: 4 (lower is better)
Translates to: EALVAGPRLAELRQDRVCGIHPP*SQPGPG
Trigger: CCCTGGCCCAGGCTGGGAGCACGGAGGATGGATGCC...ACATACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp GGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGGGGACTTTGGGGCACTaGGCCTTCGGGGAGCCAGCG +
Preference number: 4 (lower is better)
Translates to: GRATPACGWGLKVDALPLGTLGH*AFGEPA
Trigger: CGCTGGCTCCCCGAAGGCCCAGTGCCCCAAAGTCCC...CAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp AGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGGGGCTGGGGTGGGCCTaGGGGCAGAAATCCCGCCCA +
Preference number: 4 (lower is better)
Translates to: RQDRVCHHAGAQRALPPSGLGWA*GQKSRP
Trigger: TGGGCGGGATTTCTGCCCCCAGGCCCACCCCAGCCC...CGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CTCAGCCCTGCCCTGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAAGAAGAATTCCCACTTaGCTCGAGCGATTCTCTGGG +
Preference number: 4 (lower is better)
Translates to: LSPALPRTPRPARSGPGPRRIPT*LERFSG
Trigger: CCCAGAGAATCGCTCGAGCCAAGTGGGAATTCTTCT...TGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCAGGGCAGGGCTGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGGGGCAGGTGCAGGTaGGTCAGGCCTGGGAGCTGG +
Preference number: 4 (lower is better)
Translates to: QAVPPQPVDGASKWMPFLWGRCR*VRPGSW
Trigger: CCAGCTCCCAGGCCTGACCCACCTGCACCTGCCCCA...GAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp CCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGCATCAGCAGCAGAGCTaGTGCCAGAATCAGGTTCAA +
Preference number: 4 (lower is better)
Translates to: PDTASGAVGPWTRRPSWLHQQQS*CQNQVQ
Trigger: TTGAACCTGATTCTGGCACCAGCTCTGCTGCTGATG...CAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp TGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGCACTGGAAATATCGCTaGGAGAAGTGGGCCAGTACA +
Preference number: 4 (lower is better)
Translates to: CPGHRVRRGRALDQEALVHWKYR*EKWAST
Trigger: TGTACTGGCCCACTTCTCCCAGCGATATTTCCAGTG...CACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp GAGCTCAGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCGTCAGGCCCATCCGCTaGGGGGCTGGTCCCAAGCAG +
Preference number: 4 (lower is better)
Translates to: ELRQDRVCHHAGAQRALPVRPIR*GAGPKQ
Trigger: CTGCTTGGGACCAGCCCCTCAGCGGATGGGCCTGAC...GGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCTGAGCTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp CTCAGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCACTGGGTTGGGCCAGGTaGGGCCAGTGCCTCCAGGGA +
Preference number: 4 (lower is better)
Translates to: LRQDRVCHHAGAQRALPPLGWAR*GQCLQG
Trigger: TCCCTGGAGGCACTGGCCTCACCTGGCCCAACCCAG...TGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCTGAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp CCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGCAGCCACCAATTTGCTaGAGTCATTGTTCTTGCCCA +
Preference number: 4 (lower is better)
Translates to: PDTASGAVGPWTRRPSWLQPPIC*SHCSCP
Trigger: TGGGCAAGAACAATGACTTCAGCAAATTGGTGGCTG...CAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp CGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGGCAGCCACCAATTTGCTaGAGTCATTGTTCTTGCCCA +
Preference number: 4 (lower is better)
Translates to: RTPRPARSGPGPGGPRGWQPPIC*SHCSCP
Trigger: TGGGCAAGAACAATGACTTCAGCAAATTGGTGGCTG...CCAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp CGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGGCCTTTAGAAATACCCTaGGAGCTTGGTCCAGAGTCA +
Preference number: 4 (lower is better)
Translates to: RTPRPARSGPGPGGPRGWPLEIP*ELGPES
Trigger: TGACTCTGGACCAAGCTCTCAGGGTATTTCTAAAGG...CCAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp GGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTGTAGAGCACGGGCTTaGGACTGCGCGAGCGCTGCG +
Preference number: 4 (lower is better)
Translates to: GRATPACGWGLKVDALPLCRARA*DCASAA
Trigger: CGCAGCGCTCGCGCAGTCTCAAGCCCGTGCTCTACA...CAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224556.2
CDS-3UTR TCA 90 bp GAGGCCCTCGTGGCTGGCCCGAGGCTAGCTGAGCTCAGGCAGGACCGTGTATGTGGCTCTGCAGGCGGCTaGCCACCAGGTCGGTGTAGA +
Preference number: 4 (lower is better)
Translates to: EALVAGPRLAELRQDRVCGSAGG*PPGRCR
Trigger: TCTACACCGACCTGGTGGTCAGCCGCCTGCAGAGCC...ACATACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224556.2
CDS-3UTR GCA 90 bp AGGGAAGCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCGCCCCTGGTGGAGGCTaGCCAGTGGGTGAAGAGGGT +
Preference number: 4 (lower is better)
Translates to: REAGRATPACGWGLKVDAAPGGG*PVGEEG
Trigger: ACCCTCTTCACCCACTGGGCAGCCTCCACCAGGGGC...GGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGCTTCCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR GCA 90 bp AGGGAAGCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTCGGAGTACTTGGCTaGTCGCCCCACAGCCACCCC +
Preference number: 4 (lower is better)
Translates to: REAGRATPACGWGLKVDALGVLG*SPHSHP
Trigger: GGGGTGGCTGTGGGGCGAGCAGCCAAGTACTCCGAG...GGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGCTTCCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR GCA 90 bp GCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCAGGTGGTTGGGCAGTaGCATGGGGGCCCTCAGAGC +
Preference number: 4 (lower is better)
Translates to: AGRATPACGWGLKVDALPQVVGQ*HGGPQS
Trigger: GCTCTGAGGGCCCCCATGGCACTGCCCAACCACCTG...AGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR GCA 90 bp GCCCACCAAAGAAGGGAAGCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCGCCTCCTTCTGCCGCTaGTCATCCGCCTCCTTGCCT +
Preference number: 4 (lower is better)
Translates to: AHQRREAGRATPACGWGLASFCR*SSASLP
Trigger: AGGCAAGGAGGCGGATGAGCAGCGGCAGAAGGAGGC...GAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGCTTCCCTTCTTTGGTGGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR GCA 90 bp GCCCACCAAAGAAGGGAAGCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAGCCTGGGCCAGGGCTaGCTCTATGGTGTCCAGCTC +
Preference number: 4 (lower is better)
Translates to: AHQRREAGRATPACGWGLSLGQG*LYGVQL
Trigger: GAGCTGGACACCATAGAGGCAGCCCTGGCCCAGGCT...GAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGCTTCCCTTCTTTGGTGGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR GCA 90 bp CTCAGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCAGGCATCCATCCTCCGTaGTCCCAGCCTGGGCCAGGG +
Preference number: 4 (lower is better)
Translates to: LRQDRVCHHAGAQRALPPGIHPP*SQPGPG
Trigger: CCCTGGCCCAGGCTGGGAGCACGGAGGATGGATGCC...TGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCTGAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp TGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTAGGCATGTGGTCCCCTaGCCGGGCCCCCTCCGAGGC +
Preference number: 4 (lower is better)
Translates to: CHPSLWMGPQSGCPSSVSRHVVP*PGPLRG
Trigger: GCCTCGGAGGGGGCCCGGCCAGGGGACCACATGCCT...AGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp CAGGAGGCCCTCGTGGCTGGCCCGAGGCTAGCTGAGCTCAGGCAGGACCGTGTACCCTTGAGGATCCCGTaGAAGCTCTTCCAGCCCCGC +
Preference number: 4 (lower is better)
Translates to: QEALVAGPRLAELRQDRVPLRIP*KLFQPR
Trigger: GCGGGGCTGGAAGAGCTTCCACGGGATCCTCAAGGG...TACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTCCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCCTCACCTGCTCCTCCTaGGAGAGGCGGGTGGCAGCA +
Preference number: 4 (lower is better)
Translates to: QAVPPQPVDGASKWMPFLLTCSS*ERRVAA
Trigger: TGCTGCCACCCGCCTCTCCCAGGAGGAGCAGGTGAG...GAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR CCA 90 bp CTCAGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCAGCTGGCTGGTGGGCTTaGGCCGCAGGGAAGGACTGG +
Preference number: 4 (lower is better)
Translates to: LRQDRVCHHAGAQRALPPAGWWA*AAGKDW
Trigger: CCAGTCCTTCCCTGCGGCCCAAGCCCACCAGCCAGC...TGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCTGAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp GGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCCGCCCCGCGCTGCTGTaGATGCTGTTGACGCCGATC +
Preference number: 4 (lower is better)
Translates to: GRTVYVIMQVPSGHCPHRRPALL*MLLTPI
Trigger: GATCGGCGTCAACAGCATCCACAGCAGCGCGGGGCG...GCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000224556.2
CDS-3UTR TCA 90 bp GAGGCCCTCGTGGCTGGCCCGAGGCTAGCTGAGCTCAGGCAGGACCGTGTATGTGGCACAGTCGCCTTCTaGGCAGAAGCGCATGGCACC +
Preference number: 4 (lower is better)
Translates to: EALVAGPRLAELRQDRVCGTVAF*AEAHGT
Trigger: GGTGCCATGCGCTTCTGCTCAGAAGGCGACTGTGCC...ACATACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp GCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTGGCACAGTCGCCTTCTaGGCAGAAGCGCATGGCACC +
Preference number: 4 (lower is better)
Translates to: AGRATPACGWGLKVDALPGTVAF*AEAHGT
Trigger: GGTGCCATGCGCTTCTGCTCAGAAGGCGACTGTGCC...AGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR TCA 90 bp GGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGGCGATTCTCTGGGCATaGGAGGAGACTTCCCGGGGG +
Preference number: 4 (lower is better)
Translates to: GRATPACGWGLKVDALPLAILWA*EETSRG
Trigger: CCCCCGGGAAGTCTCCTCTCATGCCCAGAGAATCGC...CAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR TCA 90 bp GACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTACTGGGTTGGGCCAGGTaGGGCCAGTGCCTCCAGGGA +
Preference number: 4 (lower is better)
Translates to: DRVCHHAGAQRALPPSLLLGWAR*GQCLQG
Trigger: TCCCTGGAGGCACTGGCCTCACCTGGCCCAACCCAG...TAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp GGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGGCACAGGTCAGCGTGTaGGCACCGTCCTCTGAGGAC +
Preference number: 4 (lower is better)
Translates to: GRATPACGWGLKVDALPLAQVSV*APSSED
Trigger: GTCCTCAGAGGACGGTGCTCACACGCTGACCTGTGC...CAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR TCA 90 bp GGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCGCACAGGTCAGCGTGTaGGCACCGTCCTCTGAGGAC +
Preference number: 4 (lower is better)
Translates to: GRTVYVIMQVPSGHCPHRAQVSV*APSSED
Trigger: GTCCTCAGAGGACGGTGCTCACACGCTGACCTGTGC...GCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp GGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGAGGGAAGGACTGGAGTaGGGCGGAGGGCATCCATCC +
Preference number: 4 (lower is better)
Translates to: GRATPACGWGLKVDALPLREGLE*GGGHPS
Trigger: GGATGGATGCCCTCCGCCTCACTCCAGTCCTTCCCT...CAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR GCA 90 bp GGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCGCCGCAACTTCCGGTTaGAGCCAGGTCCAAGGGCTG +
Preference number: 4 (lower is better)
Translates to: GRTVYVIMQVPSGHCPHRAATSG*SQVQGL
Trigger: CAGCCCTTGGACCTGGCTGCAACCGGAAGTTGCGGC...GCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp CAGGAGGCCCTCGTGGCTGGCCCGAGGCTAGCTGAGCTCAGGCAGGACCGTGTAGTGAGGGGTCCCTGCTaGCAGGAAGAACAGAGCCTC +
Preference number: 4 (lower is better)
Translates to: QEALVAGPRLAELRQDRVVRGPC*QEEQSL
Trigger: GAGGCTCTGTTCTTCCTGGCAGCAGGGACCCCTCAC...TACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp CTCAGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCACTCGGAGTACTTGGCTaGTCGCCCCACAGCCACCCC +
Preference number: 4 (lower is better)
Translates to: LRQDRVCHHAGAQRALPPLGVLG*SPHSHP
Trigger: GGGGTGGCTGTGGGGCGAGCAGCCAAGTACTCCGAG...TGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCTGAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp CAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCGGGCCAGCCGCTCTGTaGTGTCCAGCTCTGAGTCTG +
Preference number: 4 (lower is better)
Translates to: QAVPPQPVDGASKWMPFLGPAAL*CPALSL
Trigger: CAGACTCAGAGCTGGACAGCACAGAGCGGCTGGCCC...GAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR GCA 90 bp CCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTTGCAGCCTCCAAATCTaGTTTCTGTCCATTGGACAA +
Preference number: 4 (lower is better)
Translates to: PGHRVRRGRALDQEALVACSLQI*FLSIGQ
Trigger: TTGTCCAATGGACAGAAAGCAGATTTGGAGGCTGCA...AGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp AGCCCTGCCCTGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGATGCAGCCTCCAAATCTaGTTTCTGTCCATTGGACAA +
Preference number: 4 (lower is better)
Translates to: SPALPRTPRPARSGPGPGCSLQI*FLSIGQ
Trigger: TTGTCCAATGGACAGAAAGCAGATTTGGAGGCTGCA...TCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCAGGGCAGGGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp GCCCACCAAAGAAGGGAAGCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCGTGCTTGTAGACAGCTaGCCCGGGCTCAGGAGTCAG +
Preference number: 4 (lower is better)
Translates to: AHQRREAGRATPACGWGLVLVDS*PGLRSQ
Trigger: CTGACTCCTGAGCCCGGGGCAGCTGTCTACAAGCAC...GAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGCTTCCCTTCTTTGGTGGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR GCA 90 bp GCCCACCAAAGAAGGGAAGCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCTCTTCCAGCCCCGCTTaGCACGAGGTGTCTTCCTGC +
Preference number: 4 (lower is better)
Translates to: AHQRREAGRATPACGWGLSSSPA*HEVSSC
Trigger: GCAGGAAGACACCTCGTGGCAAGCGGGGCTGGAAGA...GAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGCTTCCCTTCTTTGGTGGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR GCA 90 bp CAGGAGGCCCTCGTGGCTGGCCCGAGGCTAGCTGAGCTCAGGCAGGACCGTGTAGCTCATCCGCCTCCTTaGCTCGGGCCTTCTTTCCCA +
Preference number: 4 (lower is better)
Translates to: QEALVAGPRLAELRQDRVAHPPP*LGPSFP
Trigger: TGGGAAAGAAGGCCCGAGGCAAGGAGGCGGATGAGC...TACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTCCTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp GGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCGCCTCCTTCTGCCGCTaGTCATCCGCCTCCTTGCCT +
Preference number: 4 (lower is better)
Translates to: GRTVYVIMQVPSGHCPHRASFCR*SSASLP
Trigger: AGGCAAGGAGGCGGATGAGCAGCGGCAGAAGGAGGC...GCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp AGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCCGGCCTCGAGGACCTaGGCCCACCACTCGTCGTAT +
Preference number: 4 (lower is better)
Translates to: RQDRVCHHAGAQRALPPSPASRT*AHHSSY
Trigger: ATACGACGAGTGGTGGGCCCAGGTCCTCGAGGCCGG...CGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCGGTGAGGGAGCTATATaGGGTGAGGGAGGGGCTCGC +
Preference number: 4 (lower is better)
Translates to: QAVPPQPVDGASKWMPFLGEGAI*GEGGAR
Trigger: GCGAGCCCCTCCCTCACCCCATATAGCTCCCTCACC...GAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp GAGGCCCTCGTGGCTGGCCCGAGGCTAGCTGAGCTCAGGCAGGACCGTGTATGTAGAACTCTGTGCCCCTaGTGGAGGCTGCCCAGTGGG +
Preference number: 4 (lower is better)
Translates to: EALVAGPRLAELRQDRVCRTLCP*WRLPSG
Trigger: CCCACTGGGCAGCCTCCACCAGGGGCACAGAGTTCT...ACATACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CTCAGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCAGTCCAAGGGCTGGGGTaGGCCTGGGGGCAGAAATCC +
Preference number: 4 (lower is better)
Translates to: LRQDRVCHHAGAQRALPPVQGLG*AWGQKS
Trigger: GGATTTCTGCCCCCAGGCCCACCCCAGCCCTTGGAC...TGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCTGAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp GCCCACCAAAGAAGGGAAGCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCTGGGCTGACTCTCAATaGCAGAGTCGGCCTCCTCCC +
Preference number: 4 (lower is better)
Translates to: AHQRREAGRATPACGWGLWADSQ*QSRPPP
Trigger: GGGAGGAGGCCGACTCTGCCATTGAGAGTCAGCCCA...GAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGCTTCCCTTCTTTGGTGGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp GCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTGTGAAGAAGGGGCTCTaGGTTGGGCCAGGTGAGGCC +
Preference number: 4 (lower is better)
Translates to: AGRATPACGWGLKVDALPVKKGL*VGPGEA
Trigger: GGCCTCACCTGGCCCAACCCAGAGCCCCTTCTTCAC...AGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp TGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTTCAGGATTACACTaGAAATATCGCTGGGAGAAG +
Preference number: 4 (lower is better)
Translates to: CPGHRVRRGRALDQEALVASGLH*KYRWEK
Trigger: CTTCTCCCAGCGATATTTCCAGTGTAATCCTGAAGC...CACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCCCCTTGAGGATCCCGTaGAAGCTCTTCCAGCCCCGC +
Preference number: 4 (lower is better)
Translates to: QAVPPQPVDGASKWMPFLPLRIP*KLFQPR
Trigger: GCGGGGCTGGAAGAGCTTCCACGGGATCCTCAAGGG...GAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR CCA 90 bp CGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGGCAGGTAGAAGACGTGTaGTCTCTTGCTATAATCGCT +
Preference number: 4 (lower is better)
Translates to: RTPRPARSGPGPGGPRGWQVEDV*SLAIIA
Trigger: AGCGATTATAGCAAGAGACCACACGTCTTCTACCTG...CCAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGCAGGTAGAAGACGTGTaGTCTCTTGCTATAATCGCT +
Preference number: 4 (lower is better)
Translates to: PDTASGAVGPWTRRPSWLQVEDV*SLAIIA
Trigger: AGCGATTATAGCAAGAGACCACACGTCTTCTACCTG...CAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp GACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTAGCTGGCTGGTGGGCTTaGGCCGCAGGGAAGGACTGG +
Preference number: 4 (lower is better)
Translates to: DRVCHHAGAQRALPPSLLAGWWA*AAGKDW
Trigger: CCAGTCCTTCCCTGCGGCCCAAGCCCACCAGCCAGC...TAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp TATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATGCCCTGGCTGGCTGGTGGGCTTaGGCCGCAGGGAAGGACTGG +
Preference number: 4 (lower is better)
Translates to: YVIMQVPSGHCPHRSYALAGWWA*AAGKDW
Trigger: CCAGTCCTTCCCTGCGGCCCAAGCCCACCAGCCAGC...CAGGGCATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp GGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGCCCTCAGAGCTGGGCTaGCTCTCAATGGCAGAGTCG +
Preference number: 4 (lower is better)
Translates to: GRATPACGWGLKVDALPLPSELG*LSMAES
Trigger: CGACTCTGCCATTGAGAGTCAGCCCAGCTCTGAGGG...CAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR TCA 90 bp CAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCCGTGGCCCCAGCATCTaGCTCTTCCACCTCCCTTCT +
Preference number: 4 (lower is better)
Translates to: QAVPPQPVDGASKWMPFLRGPSI*LFHLPS
Trigger: AGAAGGGAGGTGGAAGAGTCAGATGCTGGGGCCACG...GAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR TCA 90 bp CAGGAGGCCCTCGTGGCTGGCCCGAGGCTAGCTGAGCTCAGGCAGGACCGTGTAAGCTGTACAAGGCCTTaGGCAGCTCCCTGGGGAAGT +
Preference number: 4 (lower is better)
Translates to: QEALVAGPRLAELRQDRVSCTRP*AAPWGS
Trigger: ACTTCCCCAGGGAGCTGCTCAAGGCCTTGTACAGCT...TACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp CAGGAGGCCCTCGTGGCTGGCCCGAGGCTAGCTGAGCTCAGGCAGGACCGTGTACTGTGCTGCCATACATaGTGGCTGGGGGACTTTGGG +
Preference number: 4 (lower is better)
Translates to: QEALVAGPRLAELRQDRVLCCHT*WLGDFG
Trigger: CCCAAAGTCCCCCAGCCAGCATGTATGGCAGCACAG...TACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTCCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp GGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGGTGAGGGGTCCCTGCTaGCAGGAAGAACAGAGCCTC +
Preference number: 4 (lower is better)
Translates to: GRATPACGWGLKVDALPLVRGPC*QEEQSL
Trigger: GAGGCTCTGTTCTTCCTGGCAGCAGGGACCCCTCAC...CAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR GCA 90 bp GAGGCCCTCGTGGCTGGCCCGAGGCTAGCTGAGCTCAGGCAGGACCGTGTATGTCACGTGAGGGGTCCCTaGTGCCAGGAAGAACAGAGC +
Preference number: 4 (lower is better)
Translates to: EALVAGPRLAELRQDRVCHVRGP*CQEEQS
Trigger: GCTCTGTTCTTCCTGGCAGCAGGGACCCCTCACGTG...ACATACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp GACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTACTCGGAGTACTTGGCTaGTCGCCCCACAGCCACCCC +
Preference number: 4 (lower is better)
Translates to: DRVCHHAGAQRALPPSLLLGVLG*SPHSHP
Trigger: GGGGTGGCTGTGGGGCGAGCAGCCAAGTACTCCGAG...TAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp GGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTGGACAAGGTGTCTGTaGTTCCCAGGGCCAGCCGCT +
Preference number: 4 (lower is better)
Translates to: GRTVYVIMQVPSGHCPHRWTRCL*FPGPAA
Trigger: AGCGGCTGGCCCTGGGAAGCACAGACACCTTGTCCA...GCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp GAGCTCAGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCAGCCTGGGCCAGGGCTaGCTCTATGGTGTCCAGCTC +
Preference number: 4 (lower is better)
Translates to: ELRQDRVCHHAGAQRALPSLGQG*LYGVQL
Trigger: GAGCTGGACACCATAGAGGCAGCCCTGGCCCAGGCT...GGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCTGAGCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp GGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGACGAGGACATCGTGGTaGGGAGATGGCACAGTCGCC +
Preference number: 4 (lower is better)
Translates to: GRATPACGWGLKVDALPLTRTSW*GDGTVA
Trigger: GGCGACTGTGCCATCTCCCCACCACGATGTCCTCGT...CAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp GAGGCCCTCGTGGCTGGCCCGAGGCTAGCTGAGCTCAGGCAGGACCGTGTATGTGCGACGAGGACATCGTaGTGGGGAGATGGCACAGTC +
Preference number: 4 (lower is better)
Translates to: EALVAGPRLAELRQDRVCATRTS*WGDGTV
Trigger: GACTGTGCCATCTCCCCACCACGATGTCCTCGTCGC...ACATACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp TGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATGCCCGTGGAGGCTGCCCAGTaGGTGAAGAGGGTCCCCAGG +
Preference number: 4 (lower is better)
Translates to: CMSSCRCPAGTAPIAPMPVEAAQ*VKRVPR
Trigger: CCTGGGGACCCTCTTCACCCACTGGGCAGCCTCCAC...GGGCATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CTCAGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCAAGAACTCTGTGCCCCTaGTGGAGGCTGCCCAGTGGG +
Preference number: 4 (lower is better)
Translates to: LRQDRVCHHAGAQRALPPRTLCP*WRLPSG
Trigger: CCCACTGGGCAGCCTCCACCAGGGGCACAGAGTTCT...TGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCTGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp GAGCTCAGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCAGAACTCTGTGCCCCTaGTGGAGGCTGCCCAGTGGG +
Preference number: 4 (lower is better)
Translates to: ELRQDRVCHHAGAQRALPRTLCP*WRLPSG
Trigger: CCCACTGGGCAGCCTCCACCAGGGGCACAGAGTTCT...GGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCTGAGCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp GAGCTCAGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCGTCCTCGGAAGTGCATaGCCAGGTGCTCAGGGGTCC +
Preference number: 4 (lower is better)
Translates to: ELRQDRVCHHAGAQRALPVLGSA*PGAQGS
Trigger: GGACCCCTGAGCACCTGGCCATGCACTTCCGAGGAC...GGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCTGAGCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp TGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTCGTGAGGCAGGTGGTTaGGCAGTGCCATGGGGGCCC +
Preference number: 4 (lower is better)
Translates to: CHPSLWMGPQSGCPSSVSREAGG*AVPWGP
Trigger: GGGCCCCCATGGCACTGCCCAACCACCTGCCTCACG...AGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp AACTCCTGGCTTCTGTCTGAGCCAGGCCCCAGGATGGAGGGGTGTTGCTGGTGTTGGGGCAGGTGCAGGTaGGTCAGGCCTGGGAGCTGG +
Preference number: 4 (lower is better)
Translates to: NSWLLSEPGPRMEGCCWCWGRCR*VRPGSW
Trigger: CCAGCTCCCAGGCCTGACCCACCTGCACCTGCCCCA...ACACCAGCAACACCCCTCCATCCTGGGGCCTGGCTCAGACAGAAGCCAGGAGTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp GGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCCTTGGGGCCAGCGTaGCCCCAGCATCTGACTCTT +
Preference number: 4 (lower is better)
Translates to: GRATPACGWGLKVDALPLSLGPA*PQHLTL
Trigger: AAGAGTCAGATGCTGGGGCCACGCTGGCCCCAAGGA...CAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp TGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATGCCCAGGAAGCTCCTTCCTTaGGGCCAGCGTGGCCCCAGC +
Preference number: 4 (lower is better)
Translates to: CMSSCRCPAGTAPIAPMPRKLLP*GQRGPS
Trigger: GCTGGGGCCACGCTGGCCCCAAGGAAGGAGCTTCCT...GGGCATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp GGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGACACGCTCCCGCTCCTaGGTCTCACCCATTAAGGCC +
Preference number: 4 (lower is better)
Translates to: GRATPACGWGLKVDALPLTRSRS*VSPIKA
Trigger: GGCCTTAATGGGTGAGACCCAGGAGCGGGAGCGTGT...CAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp GAGGCCCTCGTGGCTGGCCCGAGGCTAGCTGAGCTCAGGCAGGACCGTGTATGTTATCGCTGGGAGAAGTaGGCCAGTACACGCTCCCGC +
Preference number: 4 (lower is better)
Translates to: EALVAGPRLAELRQDRVCYRWEK*ASTRSR
Trigger: GCGGGAGCGTGTACTGGCCCACTTCTCCCAGCGATA...ACATACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp GAGGCCCTCGTGGCTGGCCCGAGGCTAGCTGAGCTCAGGCAGGACCGTGTATGTGCTCTCTCAGCTCGCTaGCCATGGCCTTCAGCTTGG +
Preference number: 4 (lower is better)
Translates to: EALVAGPRLAELRQDRVCALSAR*PWPSAW
Trigger: CCAAGCTGAAGGCCATGGCCAGCGAGCTGAGAGAGC...ACATACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp AGGGAAGCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCGCTCTCTCAGCTCGCTaGCCATGGCCTTCAGCTTGG +
Preference number: 4 (lower is better)
Translates to: REAGRATPACGWGLKVDAALSAR*PWPSAW
Trigger: CCAAGCTGAAGGCCATGGCCAGCGAGCTGAGAGAGC...GGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGCTTCCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR TCA 90 bp TGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATGCCCGGCACAGTCGCCTTCTaGGCAGAAGCGCATGGCACC +
Preference number: 4 (lower is better)
Translates to: CMSSCRCPAGTAPIAPMPGTVAF*AEAHGT
Trigger: GGTGCCATGCGCTTCTGCTCAGAAGGCGACTGTGCC...GGGCATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp TGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATGCCCGCGATTCTCTGGGCATaGGAGGAGACTTCCCGGGGG +
Preference number: 4 (lower is better)
Translates to: CMSSCRCPAGTAPIAPMPAILWA*EETSRG
Trigger: CCCCCGGGAAGTCTCCTCTCATGCCCAGAGAATCGC...GGGCATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp CAGGAGGCCCTCGTGGCTGGCCCGAGGCTAGCTGAGCTCAGGCAGGACCGTGTAGCCCTTGGCCCGGTGTaGCTCCAAGATAGCTTCAAA +
Preference number: 4 (lower is better)
Translates to: QEALVAGPRLAELRQDRVALGPV*LQDSFK
Trigger: TTTGAAGCTATCTTGGAGTCACACCGGGCCAAGGGC...TACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTCCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp GCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTGTGAGCACCGTCCTCTaGGGACAGGGCTTCAGGATT +
Preference number: 4 (lower is better)
Translates to: AGRATPACGWGLKVDALPVSTVL*GQGFRI
Trigger: AATCCTGAAGCCCTGTCCTCAGAGGACGGTGCTCAC...AGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR TCA 90 bp GGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCAGTCGCCACCATCATTaGGGCCCTCCAGGTTTCCGA +
Preference number: 4 (lower is better)
Translates to: GRTVYVIMQVPSGHCPHRSRHHH*GPPGFR
Trigger: TCGGAAACCTGGAGGGCCTCAATGATGGTGGCGACT...GCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp AGGGAAGCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCAGCTGTACAAGGCCTTaGGCAGCTCCCTGGGGAAGT +
Preference number: 4 (lower is better)
Translates to: REAGRATPACGWGLKVDASCTRP*AAPWGS
Trigger: ACTTCCCCAGGGAGCTGCTCAAGGCCTTGTACAGCT...GGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGCTTCCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR TCA 90 bp CAGGAGGCCCTCGTGGCTGGCCCGAGGCTAGCTGAGCTCAGGCAGGACCGTGTAAGAGGATCATGCCCTTaGGGATCCCGTGGAAGCTCT +
Preference number: 4 (lower is better)
Translates to: QEALVAGPRLAELRQDRVRGSCP*GSRGSS
Trigger: AGAGCTTCCACGGGATCCTCAAGGGCATGATCCTCT...TACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTCCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp GGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCAGAGCCTTCCCAGGCTaGTACTCCTCCTTCTGCAGG +
Preference number: 4 (lower is better)
Translates to: GRTVYVIMQVPSGHCPHRRAFPG*YSSFCR
Trigger: CCTGCAGAAGGAGGAGTATCAGCCTGGGAAGGCTCT...GCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp GAGGCCCTCGTGGCTGGCCCGAGGCTAGCTGAGCTCAGGCAGGACCGTGTATGTAGAGCCTTCCCAGGCTaGTACTCCTCCTTCTGCAGG +
Preference number: 4 (lower is better)
Translates to: EALVAGPRLAELRQDRVCRAFPG*YSSFCR
Trigger: CCTGCAGAAGGAGGAGTATCAGCCTGGGAAGGCTCT...ACATACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp TGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATGCCCAGGGAAGGACTGGAGTaGGGCGGAGGGCATCCATCC +
Preference number: 4 (lower is better)
Translates to: CMSSCRCPAGTAPIAPMPREGLE*GGGHPS
Trigger: GGATGGATGCCCTCCGCCTCACTCCAGTCCTTCCCT...GGGCATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp GCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTGCTGCCATACATaGTGGCTGGGGGACTTTGGG +
Preference number: 4 (lower is better)
Translates to: AGRATPACGWGLKVDALPLCCHT*WLGDFG
Trigger: CCCAAAGTCCCCCAGCCAGCATGTATGGCAGCACAG...AGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR GCA 90 bp ACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATGCCCCTGGTGGAGGCTaGCCAGTGGGTGAAGAGGGT +
Preference number: 4 (lower is better)
Translates to: TVYVIMQVPSGHCPHRSYAPGGG*PVGEEG
Trigger: ACCCTCTTCACCCACTGGGCAGCCTCCACCAGGGGC...ATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp GACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTAGACCACAGAACTCTGTaGCCCTGGTGGAGGCTGCCC +
Preference number: 4 (lower is better)
Translates to: DRVCHHAGAQRALPPSLLDHRTL*PWWRLP
Trigger: GGGCAGCCTCCACCAGGGGCACAGAGTTCTGTGGTC...TAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp CTCAGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCAGTGAGGGGTCCCTGCTaGCAGGAAGAACAGAGCCTC +
Preference number: 4 (lower is better)
Translates to: LRQDRVCHHAGAQRALPPVRGPC*QEEQSL
Trigger: GAGGCTCTGTTCTTCCTGGCAGCAGGGACCCCTCAC...TGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCTGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp GAGCTCAGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCGGAGTAAAGCCCATCTaGCCCGATCTGGGGTGGGAC +
Preference number: 4 (lower is better)
Translates to: ELRQDRVCHHAGAQRALPGVKPI*PDLGWD
Trigger: GTCCCACCCCAGATCGGGGCAGATGGGCTTTACTCC...GGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCTGAGCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp GCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTGGCTACTATAGGAGGTaGCCTTGGCCCGGTGTGACT +
Preference number: 4 (lower is better)
Translates to: AGRATPACGWGLKVDALPGYYRR*PWPGVT
Trigger: AGTCACACCGGGCCAAGGGCACCTCCTATAGTAGCC...AGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR GCA 90 bp GAGCTCAGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCTGGACAAGGTGTCTGTaGTTCCCAGGGCCAGCCGCT +
Preference number: 4 (lower is better)
Translates to: ELRQDRVCHHAGAQRALPWTRCL*FPGPAA
Trigger: AGCGGCTGGCCCTGGGAAGCACAGACACCTTGTCCA...GGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCTGAGCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp GACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTACAGTCAGGGTCTGCGTaGACCTTTCGCACCAGGGCC +
Preference number: 4 (lower is better)
Translates to: DRVCHHAGAQRALPPSLLQSGSA*TFRTRA
Trigger: GGCCCTGGTGCGAAAGGTGCACGCAGACCCTGACTG...TAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp CTCAGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCTTCCAGCCCCGCTTaGCACGAGGTGTCTTCCTGC +
Preference number: 4 (lower is better)
Translates to: LRQDRVCHHAGAQRALPPSSSPA*HEVSSC
Trigger: GCAGGAAGACACCTCGTGGCAAGCGGGGCTGGAAGA...TGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCTGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp GAGGCCCTCGTGGCTGGCCCGAGGCTAGCTGAGCTCAGGCAGGACCGTGTATGTATCCAGGACTGCATTTaGTCCAGGCTCGGAGCCTGG +
Preference number: 4 (lower is better)
Translates to: EALVAGPRLAELRQDRVCIQDCI*SRLGAW
Trigger: CCAGGCTCCGAGCCTGGAGCAAATGCAGTCCTGGAT...ACATACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp GGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCATCCAGGACTGCATTTaGTCCAGGCTCGGAGCCTGG +
Preference number: 4 (lower is better)
Translates to: GRTVYVIMQVPSGHCPHRIQDCI*SRLGAW
Trigger: CCAGGCTCCGAGCCTGGAGCAAATGCAGTCCTGGAT...GCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp CAGGAGGCCCTCGTGGCTGGCCCGAGGCTAGCTGAGCTCAGGCAGGACCGTGTACGAGTGATCCAGGACTaGATTTGCTCCAGGCTCGGA +
Preference number: 4 (lower is better)
Translates to: QEALVAGPRLAELRQDRVRVIQD*ICSRLG
Trigger: TCCGAGCCTGGAGCAAATGCAGTCCTGGATCACTCG...TACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTCCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp GACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTAGCCTCCTTCTGCCGCTaGTCATCCGCCTCCTTGCCT +
Preference number: 4 (lower is better)
Translates to: DRVCHHAGAQRALPPSLLASFCR*SSASLP
Trigger: AGGCAAGGAGGCGGATGAGCAGCGGCAGAAGGAGGC...TAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp GAGCTCAGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCGCCATACATGCTGGCTaGGGGACTTTGGGGCACTGG +
Preference number: 4 (lower is better)
Translates to: ELRQDRVCHHAGAQRALPAIHAG*GTLGHW
Trigger: CCAGTGCCCCAAAGTCCCCCAGCCAGCATGTATGGC...GGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCTGAGCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp GACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTAGGTGAGGGAGCTATATaGGGTGAGGGAGGGGCTCGC +
Preference number: 4 (lower is better)
Translates to: DRVCHHAGAQRALPPSLLGEGAI*GEGGAR
Trigger: GCGAGCCCCTCCCTCACCCCATATAGCTCCCTCACC...TAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp ACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATGTGGAGGCTGCCCAGTaGGTGAAGAGGGTCCCCAGG +
Preference number: 4 (lower is better)
Translates to: TVYVIMQVPSGHCPHRSYVEAAQ*VKRVPR
Trigger: CCTGGGGACCCTCTTCACCCACTGGGCAGCCTCCAC...ATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp ACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATGTCCAAGGGCTGGGGTaGGCCTGGGGGCAGAAATCC +
Preference number: 4 (lower is better)
Translates to: TVYVIMQVPSGHCPHRSYVQGLG*AWGQKS
Trigger: GGATTTCTGCCCCCAGGCCCACCCCAGCCCTTGGAC...ATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp GACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTAGGGGGCCCTCAGAGCTaGGCTGACTCTCAATGGCAG +
Preference number: 4 (lower is better)
Translates to: DRVCHHAGAQRALPPSLLGGPQS*ADSQWQ
Trigger: CTGCCATTGAGAGTCAGCCCAGCTCTGAGGGCCCCC...TAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp TATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATGCCCTGGGGGGCCCTCAGAGCTaGGCTGACTCTCAATGGCAG +
Preference number: 4 (lower is better)
Translates to: YVIMQVPSGHCPHRSYALGGPQS*ADSQWQ
Trigger: CTGCCATTGAGAGTCAGCCCAGCTCTGAGGGCCCCC...CAGGGCATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATA
63% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp GAGCTCAGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCTGCCACTGCCCAGACTaGAAGAAGGGCCAGGGCATG +
Preference number: 4 (lower is better)
Translates to: ELRQDRVCHHAGAQRALPCHCPD*KKGQGM
Trigger: CATGCCCTGGCCCTTCTTCCAGTCTGGGCAGTGGCA...GGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCTGAGCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp TGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATGCCCGTGAAGAAGGGGCTCTaGGTTGGGCCAGGTGAGGCC +
Preference number: 4 (lower is better)
Translates to: CMSSCRCPAGTAPIAPMPVKKGL*VGPGEA
Trigger: GGCCTCACCTGGCCCAACCCAGAGCCCCTTCTTCAC...GGGCATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp TATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATGCCCTGCCCTTGAGGATCCCGTaGAAGCTCTTCCAGCCCCGC +
Preference number: 4 (lower is better)
Translates to: YVIMQVPSGHCPHRSYALPLRIP*KLFQPR
Trigger: GCGGGGCTGGAAGAGCTTCCACGGGATCCTCAAGGG...CAGGGCATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp GAGGCCCTCGTGGCTGGCCCGAGGCTAGCTGAGCTCAGGCAGGACCGTGTATGTCGGGTAGCCAGGGCGTaGTGGATGCTGATAGCATTC +
Preference number: 4 (lower is better)
Translates to: EALVAGPRLAELRQDRVCRVARA*WMLIAF
Trigger: GAATGCTATCAGCATCCACCACGCCCTGGCTACCCG...ACATACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp AGGGAAGCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCGGGTAGCCAGGGCGTaGTGGATGCTGATAGCATTC +
Preference number: 4 (lower is better)
Translates to: REAGRATPACGWGLKVDARVARA*WMLIAF
Trigger: GAATGCTATCAGCATCCACCACGCCCTGGCTACCCG...GGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGCTTCCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR CCA 90 bp TGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATGCCCTCCAGGCTCGGAGCCTaGAAGAGGAAGACCCGCCAG +
Preference number: 4 (lower is better)
Translates to: CMSSCRCPAGTAPIAPMPSRLGA*KRKTRQ
Trigger: CTGGCGGGTCTTCCTCTTCCAGGCTCCGAGCCTGGA...GGGCATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp ACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATCTCACCTGCTCCTCCTaGGAGAGGCGGGTGGCAGCA +
Preference number: 4 (lower is better)
Translates to: TVYVIMQVPSGHCPHRSYLTCSS*ERRVAA
Trigger: TGCTGCCACCCGCCTCTCCCAGGAGGAGCAGGTGAG...ATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp GAGGCCCTCGTGGCTGGCCCGAGGCTAGCTGAGCTCAGGCAGGACCGTGTATGTTTCAGCTTGGCCTCATaGGTCCTCACCTGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: EALVAGPRLAELRQDRVCFSLAS*VLTCSS
Trigger: GGAGGAGCAGGTGAGGACCCATGAGGCCAAGCTGAA...ACATACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp GGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTTCAGCTTGGCCTCATaGGTCCTCACCTGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: GRTVYVIMQVPSGHCPHRFSLAS*VLTCSS
Trigger: GGAGGAGCAGGTGAGGACCCATGAGGCCAAGCTGAA...GCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp AGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGGCTCTCTCAGCTCGCTaGCCATGGCCTTCAGCTTGG +
Preference number: 4 (lower is better)
Translates to: RQDRVCHHAGAQRALPPSALSAR*PWPSAW
Trigger: CCAAGCTGAAGGCCATGGCCAGCGAGCTGAGAGAGC...CGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp AGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGACCCGGGGCTGGCTGGTaGGCTTGGGCCGCAGGGAAG +
Preference number: 4 (lower is better)
Translates to: SLWMGPQSGCPSSVSAKRPGAGW*AWAAGK
Trigger: CTTCCCTGCGGCCCAAGCCCACCAGCCAGCCCCGGG...TCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR TCA 90 bp GACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTACCCTCAGAGCTGGGCTaGCTCTCAATGGCAGAGTCG +
Preference number: 4 (lower is better)
Translates to: DRVCHHAGAQRALPPSLLPSELG*LSMAES
Trigger: CGACTCTGCCATTGAGAGTCAGCCCAGCTCTGAGGG...TAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp CAGGAGGCCCTCGTGGCTGGCCCGAGGCTAGCTGAGCTCAGGCAGGACCGTGTACTTCAAACACACAACTaGAGGAGTCAGGCCCATCCG +
Preference number: 4 (lower is better)
Translates to: QEALVAGPRLAELRQDRVLQTHN*RSQAHP
Trigger: CGGATGGGCCTGACTCCTTCAGTTGTGTGTTTGAAG...TACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp AGGGAAGCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCCACATCGGCCTTCCTaGAGCCATCGAGTCGGTATA +
Preference number: 4 (lower is better)
Translates to: REAGRATPACGWGLKVDAPHRPS*SHRVGI
Trigger: TATACCGACTCGATGGCTTCAGGAAGGCCGATGTGG...GGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGCTTCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR TCA 90 bp TGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTAGGGAAGGACTGGAGTaGGGCGGAGGGCATCCATCC +
Preference number: 4 (lower is better)
Translates to: CHPSLWMGPQSGCPSSVSREGLE*GGGHPS
Trigger: GGATGGATGCCCTCCGCCTCACTCCAGTCCTTCCCT...AGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR GCA 90 bp CAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGGGCAAGTGGGGCAGGTaGAGGTGGGTCAGGCCTGGG +
Preference number: 4 (lower is better)
Translates to: QPVDGASKWMPFLCLCKEGKWGR*RWVRPG
Trigger: CCCAGGCCTGACCCACCTGCACCTGCCCCACTTGCC...CTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR GCA 90 bp TATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATGCCCTGGTGCTTGTAGACAGCTaGCCCGGGCTCAGGAGTCAG +
Preference number: 4 (lower is better)
Translates to: YVIMQVPSGHCPHRSYALVLVDS*PGLRSQ
Trigger: CTGACTCCTGAGCCCGGGGCAGCTGTCTACAAGCAC...CAGGGCATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp ACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATCAGTCAGGGTCTGCGTaGACCTTTCGCACCAGGGCC +
Preference number: 4 (lower is better)
Translates to: TVYVIMQVPSGHCPHRSYQSGSA*TFRTRA
Trigger: GGCCCTGGTGCGAAAGGTGCACGCAGACCCTGACTG...ATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp TGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTCAGTCAGGGTCTGCGTaGACCTTTCGCACCAGGGCC +
Preference number: 4 (lower is better)
Translates to: CHPSLWMGPQSGCPSSVSQSGSA*TFRTRA
Trigger: GGCCCTGGTGCGAAAGGTGCACGCAGACCCTGACTG...AGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR GCA 90 bp TGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATGCCCTCTTCCAGCCCCGCTTaGCACGAGGTGTCTTCCTGC +
Preference number: 4 (lower is better)
Translates to: CMSSCRCPAGTAPIAPMPSSSPA*HEVSSC
Trigger: GCAGGAAGACACCTCGTGGCAAGCGGGGCTGGAAGA...GGGCATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp TGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATGCCCGCTCATCCGCCTCCTTaGCTCGGGCCTTCTTTCCCA +
Preference number: 4 (lower is better)
Translates to: CMSSCRCPAGTAPIAPMPAHPPP*LGPSFP
Trigger: TGGGAAAGAAGGCCCGAGGCAAGGAGGCGGATGAGC...GGGCATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp AACTCCTGGCTTCTGTCTGAGCCAGGCCCCAGGATGGAGGGGTGTTGCTGGTGTGCCTCCTTCTGCCGCTaGTCATCCGCCTCCTTGCCT +
Preference number: 4 (lower is better)
Translates to: NSWLLSEPGPRMEGCCWCASFCR*SSASLP
Trigger: AGGCAAGGAGGCGGATGAGCAGCGGCAGAAGGAGGC...ACACCAGCAACACCCCTCCATCCTGGGGCCTGGCTCAGACAGAAGCCAGGAGTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR CCA 90 bp AGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGATCGTGGTGGGGAGATaGCACAGTCGCCTTCTGAGC +
Preference number: 4 (lower is better)
Translates to: RQDRVCHHAGAQRALPPSIVVGR*HSRLLS
Trigger: GCTCAGAAGGCGACTGTGCCATCTCCCCACCACGAT...CGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CTCAGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATGCTGCCATACATGCTaGCTGGGGGACTTTGGGGCA +
Preference number: 4 (lower is better)
Translates to: LRQDRVCHHAGAQRALPPCCHTC*LGDFGA
Trigger: TGCCCCAAAGTCCCCCAGCCAGCATGTATGGCAGCA...TGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCTGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp TGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGGGGCTGGGGTGGGCCTaGGGGCAGAAATCCCGCCCA +
Preference number: 4 (lower is better)
Translates to: CGWGLKVDALPLSLQRERGLGWA*GQKSRP
Trigger: TGGGCGGGATTTCTGCCCCCAGGCCCACCCCAGCCC...CCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp GGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGGGAGTGGGTCTGATGTaGATGCCTCTAGCCGCAACT +
Preference number: 4 (lower is better)
Translates to: GRATPACGWGLKVDALPLGVGLM*MPLAAT
Trigger: AGTTGCGGCTAGAGGCATCCACATCAGACCCACTCC...CAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp TATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATGCCCTGCTGTCTCGGAGTACTTaGCTGCTCGCCCCACAGCCA +
Preference number: 4 (lower is better)
Translates to: YVIMQVPSGHCPHRSYALLSRST*LLAPQP
Trigger: TGGCTGTGGGGCGAGCAGCCAAGTACTCCGAGACAG...CAGGGCATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp GCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGCGTGAGGCAGGTGGTTaGGCAGTGCCATGGGGGCCC +
Preference number: 4 (lower is better)
Translates to: ACGWGLKVDALPLSLQREREAGG*AVPWGP
Trigger: GGGCCCCCATGGCACTGCCCAACCACCTGCCTCACG...CTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp GGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTATAGGAGGTGCCCTTaGCCCGGTGTGACTCCAAGA +
Preference number: 4 (lower is better)
Translates to: GRTVYVIMQVPSGHCPHRYRRCP*PGVTPR
Trigger: TCTTGGAGTCACACCGGGCCAAGGGCACCTCCTATA...GCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp AGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCGGGTAGCCAGGGCGTaGTGGATGCTGATAGCATTC +
Preference number: 4 (lower is better)
Translates to: RQDRVCHHAGAQRALPPSRVARA*WMLIAF
Trigger: GAATGCTATCAGCATCCACCACGCCCTGGCTACCCG...CGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CAGGAGGCCCTCGTGGCTGGCCCGAGGCTAGCTGAGCTCAGGCAGGACCGTGTACGGCTGAATTTCTTCTaGGAGCTAACAGCAGCTGGG +
Preference number: 4 (lower is better)
Translates to: QEALVAGPRLAELRQDRVRLNFF*ELTAAG
Trigger: CCCAGCTGCTGTTAGCTCCCAGAAGAAATTCAGCCG...TACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CTCAGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCACCATGGCCTTCAGCTTaGCCTCATGGGTCCTCACCT +
Preference number: 4 (lower is better)
Translates to: LRQDRVCHHAGAQRALPPPWPSA*PHGSSP
Trigger: AGGTGAGGACCCATGAGGCCAAGCTGAAGGCCATGG...TGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCTGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp CTCAGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCAAGGGTACTGGTGACTTaGGAAGCCCAGAGTGAGGCA +
Preference number: 4 (lower is better)
Translates to: LRQDRVCHHAGAQRALPPRVLVT*EAQSEA
Trigger: TGCCTCACTCTGGGCTTCTCAAGTCACCAGTACCCT...TGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCTGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp TGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGGTCAGGCCCATCCGCTaGGGGGCTGGTCCCAAGCAG +
Preference number: 4 (lower is better)
Translates to: CGWGLKVDALPLSLQRERVRPIR*GAGPKQ
Trigger: CTGCTTGGGACCAGCCCCTCAGCGGATGGGCCTGAC...CCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR TCA 90 bp TGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTCGTGGCCCCAGCATCTaGCTCTTCCACCTCCCTTCT +
Preference number: 4 (lower is better)
Translates to: CHPSLWMGPQSGCPSSVSRGPSI*LFHLPS
Trigger: AGAAGGGAGGTGGAAGAGTCAGATGCTGGGGCCACG...AGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR TCA 90 bp GAGCTCAGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCACATCGGCCTTCCTaGAGCCATCGAGTCGGTATA +
Preference number: 4 (lower is better)
Translates to: ELRQDRVCHHAGAQRALPPHRPS*SHRVGI
Trigger: TATACCGACTCGATGGCTTCAGGAAGGCCGATGTGG...GGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCTGAGCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp TGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATGCCCAGTCGCCACCATCATTaGGGCCCTCCAGGTTTCCGA +
Preference number: 4 (lower is better)
Translates to: CMSSCRCPAGTAPIAPMPSRHHH*GPPGFR
Trigger: TCGGAAACCTGGAGGGCCTCAATGATGGTGGCGACT...GGGCATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp TGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATGCCCAGCTGTACAAGGCCTTaGGCAGCTCCCTGGGGAAGT +
Preference number: 4 (lower is better)
Translates to: CMSSCRCPAGTAPIAPMPSCTRP*AAPWGS
Trigger: ACTTCCCCAGGGAGCTGCTCAAGGCCTTGTACAGCT...GGGCATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp CTCAGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCAAGAGGATCATGCCCTTaGGGATCCCGTGGAAGCTCT +
Preference number: 4 (lower is better)
Translates to: LRQDRVCHHAGAQRALPPRGSCP*GSRGSS
Trigger: AGAGCTTCCACGGGATCCTCAAGGGCATGATCCTCT...TGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCTGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp ACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATTGGACAAGGTGTCTGTaGTTCCCAGGGCCAGCCGCT +
Preference number: 4 (lower is better)
Translates to: TVYVIMQVPSGHCPHRSYWTRCL*FPGPAA
Trigger: AGCGGCTGGCCCTGGGAAGCACAGACACCTTGTCCA...ATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp TGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGTGCTTGTAGACAGCTaGCCCGGGCTCAGGAGTCAG +
Preference number: 4 (lower is better)
Translates to: CHPSLWMGPQSGCPSSVSVLVDS*PGLRSQ
Trigger: CTGACTCCTGAGCCCGGGGCAGCTGTCTACAAGCAC...AGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR GCA 90 bp AACTCCTGGCTTCTGTCTGAGCCAGGCCCCAGGATGGAGGGGTGTTGCTGGTGTCCTGCAGTCAGGGTCTaGGTGCACCTTTCGCACCAG +
Preference number: 4 (lower is better)
Translates to: NSWLLSEPGPRMEGCCWCPAVRV*VHLSHQ
Trigger: CTGGTGCGAAAGGTGCACGCAGACCCTGACTGCAGG...ACACCAGCAACACCCCTCCATCCTGGGGCCTGGCTCAGACAGAAGCCAGGAGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR GCA 90 bp GAGCTCAGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCGAGTGATCCAGGACTaGATTTGCTCCAGGCTCGGA +
Preference number: 4 (lower is better)
Translates to: ELRQDRVCHHAGAQRALPRVIQD*ICSRLG
Trigger: TCCGAGCCTGGAGCAAATGCAGTCCTGGATCACTCG...GGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCTGAGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp AGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTTGACTCGAAGCAGTaGTGCATAGGTGCCGTAGCG +
Preference number: 4 (lower is better)
Translates to: RQDRVCHHAGAQRALPPSLDSKQ*CIGAVA
Trigger: CGCTACGGCACCTATGCAGCACTGCTTCGAGTCAAG...CGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp GACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTAATCGTGGTGGGGAGATaGCACAGTCGCCTTCTGAGC +
Preference number: 4 (lower is better)
Translates to: DRVCHHAGAQRALPPSLLIVVGR*HSRLLS
Trigger: GCTCAGAAGGCGACTGTGCCATCTCCCCACCACGAT...TAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp TGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCCATACATGCTGGCTaGGGGACTTTGGGGCACTGG +
Preference number: 4 (lower is better)
Translates to: CHPSLWMGPQSGCPSSVSAIHAG*GTLGHW
Trigger: CCAGTGCCCCAAAGTCCCCCAGCCAGCATGTATGGC...AGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp CAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGCCGGCCTCGAGGACCTaGGCCCACCACTCGTCGTAT +
Preference number: 4 (lower is better)
Translates to: QPVDGASKWMPFLCLCKEPASRT*AHHSSY
Trigger: ATACGACGAGTGGTGGGCCCAGGTCCTCGAGGCCGG...CTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp GGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCAGTGGCCTCACACTaGCCTTCTCCACAAAACGGA +
Preference number: 4 (lower is better)
Translates to: GRTVYVIMQVPSGHCPHRSVASH*PSPQNG
Trigger: TCCGTTTTGTGGAGAAGGCCAGTGTGAGGCCACTGA...GCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp TGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATGCCCTTCAGCTTGGCCTCATaGGTCCTCACCTGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: CMSSCRCPAGTAPIAPMPFSLAS*VLTCSS
Trigger: GGAGGAGCAGGTGAGGACCCATGAGGCCAAGCTGAA...GGGCATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp TGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATGCCCCCATGGCCTTCAGCTTaGCCTCATGGGTCCTCACCT +
Preference number: 4 (lower is better)
Translates to: CMSSCRCPAGTAPIAPMPPWPSA*PHGSSP
Trigger: AGGTGAGGACCCATGAGGCCAAGCTGAAGGCCATGG...GGGCATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp GACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATCAGCTCGCTGGCCATaGCCTTCAGCTTGGCCTCAT +
Preference number: 4 (lower is better)
Translates to: DRVCHHAGAQRALPPSLLSARWP*PSAWPH
Trigger: ATGAGGCCAAGCTGAAGGCCATGGCCAGCGAGCTGA...TAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR TCA 90 bp TGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTAGAGCCTTCCCAGGCTaGTACTCCTCCTTCTGCAGG +
Preference number: 4 (lower is better)
Translates to: CHPSLWMGPQSGCPSSVSRAFPG*YSSFCR
Trigger: CCTGCAGAAGGAGGAGTATCAGCCTGGGAAGGCTCT...AGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR GCA 90 bp CTCAGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCACCTCATCATCTTCGTTaGCACTGCCCAGACTGGAAG +
Preference number: 4 (lower is better)
Translates to: LRQDRVCHHAGAQRALPPPHHLR*HCPDWK
Trigger: CTTCCAGTCTGGGCAGTGGCAACGAAGATGATGAGG...TGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCTGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp GAGCTCAGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCTCATCATCTTCGTTaGCACTGCCCAGACTGGAAG +
Preference number: 4 (lower is better)
Translates to: ELRQDRVCHHAGAQRALPPHHLR*HCPDWK
Trigger: CTTCCAGTCTGGGCAGTGGCAACGAAGATGATGAGG...GGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCTGAGCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp TGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTATCCAGGACTGCATTTaGTCCAGGCTCGGAGCCTGG +
Preference number: 4 (lower is better)
Translates to: CHPSLWMGPQSGCPSSVSIQDCI*SRLGAW
Trigger: CCAGGCTCCGAGCCTGGAGCAAATGCAGTCCTGGAT...AGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR GCA 90 bp ACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATATCCAGGACTGCATTTaGTCCAGGCTCGGAGCCTGG +
Preference number: 4 (lower is better)
Translates to: TVYVIMQVPSGHCPHRSYIQDCI*SRLGAW
Trigger: CCAGGCTCCGAGCCTGGAGCAAATGCAGTCCTGGAT...ATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp GACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTACGAGTGATCCAGGACTaGATTTGCTCCAGGCTCGGA +
Preference number: 4 (lower is better)
Translates to: DRVCHHAGAQRALPPSLLRVIQD*ICSRLG
Trigger: TCCGAGCCTGGAGCAAATGCAGTCCTGGATCACTCG...TAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR GCA 90 bp TGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATGCCCCTTGACTCGAAGCAGTaGTGCATAGGTGCCGTAGCG +
Preference number: 4 (lower is better)
Translates to: CMSSCRCPAGTAPIAPMPLDSKQ*CIGAVA
Trigger: CGCTACGGCACCTATGCAGCACTGCTTCGAGTCAAG...GGGCATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp ACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATTGCTGCCATACATGCTaGCTGGGGGACTTTGGGGCA +
Preference number: 4 (lower is better)
Translates to: TVYVIMQVPSGHCPHRSYCCHTC*LGDFGA
Trigger: TGCCCCAAAGTCCCCCAGCCAGCATGTATGGCAGCA...ATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp CAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGGGTGAGGGAGCTATATaGGGTGAGGGAGGGGCTCGC +
Preference number: 4 (lower is better)
Translates to: QPVDGASKWMPFLCLCKEGEGAI*GEGGAR
Trigger: GCGAGCCCCTCCCTCACCCCATATAGCTCCCTCACC...CTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp GGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCAGAAGAATTCCCACTTaGCTCGAGCGATTCTCTGGG +
Preference number: 4 (lower is better)
Translates to: GRTVYVIMQVPSGHCPHRRRIPT*LERFSG
Trigger: CCCAGAGAATCGCTCGAGCCAAGTGGGAATTCTTCT...GCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp GCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTAGAAGAATTCCCACTTaGCTCGAGCGATTCTCTGGG +
Preference number: 4 (lower is better)
Translates to: AGRATPACGWGLKVDALPRRIPT*LERFSG
Trigger: CCCAGAGAATCGCTCGAGCCAAGTGGGAATTCTTCT...AGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp TATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATGCCCTGTATAGGAGGTGCCCTTaGCCCGGTGTGACTCCAAGA +
Preference number: 4 (lower is better)
Translates to: YVIMQVPSGHCPHRSYALYRRCP*PGVTPR
Trigger: TCTTGGAGTCACACCGGGCCAAGGGCACCTCCTATA...CAGGGCATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp GCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGGTGAAGAAGGGGCTCTaGGTTGGGCCAGGTGAGGCC +
Preference number: 4 (lower is better)
Translates to: ACGWGLKVDALPLSLQREVKKGL*VGPGEA
Trigger: GGCCTCACCTGGCCCAACCCAGAGCCCCTTCTTCAC...CTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp GAGGCCCTCGTGGCTGGCCCGAGGCTAGCTGAGCTCAGGCAGGACCGTGTATGTCATCAGCAGCAGAGCTaGTGCCAGAATCAGGTTCAA +
Preference number: 4 (lower is better)
Translates to: EALVAGPRLAELRQDRVCHQQQS*CQNQVQ
Trigger: TTGAACCTGATTCTGGCACCAGCTCTGCTGCTGATG...ACATACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp AACTCCTGGCTTCTGTCTGAGCCAGGCCCCAGGATGGAGGGGTGTTGCTGGTGTGTCGGTATAGCCTCTTaGCTAGGCGCTGTGCAGCCT +
Preference number: 4 (lower is better)
Translates to: NSWLLSEPGPRMEGCCWCVGIAS*LGAVQP
Trigger: AGGCTGCACAGCGCCTAGCCAAGAGGCTATACCGAC...ACACCAGCAACACCCCTCCATCCTGGGGCCTGGCTCAGACAGAAGCCAGGAGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp GCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCACTGGAAATATCGCTaGGAGAAGTGGGCCAGTACA +
Preference number: 4 (lower is better)
Translates to: AGRATPACGWGLKVDALPHWKYR*EKWAST
Trigger: TGTACTGGCCCACTTCTCCCAGCGATATTTCCAGTG...AGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp CAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGTCCAGGCTCGGAGCCTaGAAGAGGAAGACCCGCCAG +
Preference number: 4 (lower is better)
Translates to: QPVDGASKWMPFLCLCKESRLGA*KRKTRQ
Trigger: CTGGCGGGTCTTCCTCTTCCAGGCTCCGAGCCTGGA...CTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR CCA 90 bp GCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGTCCAGGCTCGGAGCCTaGAAGAGGAAGACCCGCCAG +
Preference number: 4 (lower is better)
Translates to: ACGWGLKVDALPLSLQRESRLGA*KRKTRQ
Trigger: CTGGCGGGTCTTCCTCTTCCAGGCTCCGAGCCTGGA...CTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR CCA 90 bp TGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGGCCGCAGGGAAGGACTaGAGTGAGGCGGAGGGCATC +
Preference number: 4 (lower is better)
Translates to: CGWGLKVDALPLSLQRERAAGKD*SEAEGI
Trigger: GATGCCCTCCGCCTCACTCCAGTCCTTCCCTGCGGC...CCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR GCA 90 bp ATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGTGAGCGACCACAGAACTCTGTaGCCCTGGTGGAGGCTGCCC +
Preference number: 4 (lower is better)
Translates to: MGPQSGCPSSVSAKREVSDHRTL*PWWRLP
Trigger: GGGCAGCCTCCACCAGGGGCACAGAGTTCTGTGGTC...GCTCACCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR GCA 90 bp TGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGGCCGCAACTTCCGGTTaGAGCCAGGTCCAAGGGCTG +
Preference number: 4 (lower is better)
Translates to: CGWGLKVDALPLSLQRERAATSG*SQVQGL
Trigger: CAGCCCTTGGACCTGGCTGCAACCGGAAGTTGCGGC...CCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR GCA 90 bp AGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGGGCCAGCCGCTCTGTaGTGTCCAGCTCTGAGTCTG +
Preference number: 4 (lower is better)
Translates to: SLWMGPQSGCPSSVSAKRGPAAL*CPALSL
Trigger: CAGACTCAGAGCTGGACAGCACAGAGCGGCTGGCCC...TCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp CAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGGCCATACATGCTGGCTaGGGGACTTTGGGGCACTGG +
Preference number: 4 (lower is better)
Translates to: QPVDGASKWMPFLCLCKEAIHAG*GTLGHW
Trigger: CCAGTGCCCCAAAGTCCCCCAGCCAGCATGTATGGC...CTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp ATTCAGAGCAGTTTTAATGAGGGTGGAGGCTGTACAAAGGGTAGGGCCCACCAAGGGCTGGGGTGGGCCTaGGGGCAGAAATCCCGCCCA +
Preference number: 4 (lower is better)
Translates to: IQSSFNEGGGCTKGRAHQGLGWA*GQKSRP
Trigger: TGGGCGGGATTTCTGCCCCCAGGCCCACCCCAGCCC...TTGGTGGGCCCTACCCTTTGTACAGCCTCCACCCTCATTAAAACTGCTCTGAAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp TGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGGTCCTCGGAAGTGCATaGCCAGGTGCTCAGGGGTCC +
Preference number: 4 (lower is better)
Translates to: CGWGLKVDALPLSLQRERVLGSA*PGAQGS
Trigger: GGACCCCTGAGCACCTGGCCATGCACTTCCGAGGAC...CCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp CAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGTCCTTGGGGCCAGCGTaGCCCCAGCATCTGACTCTT +
Preference number: 4 (lower is better)
Translates to: QPVDGASKWMPFLCLCKESLGPA*PQHLTL
Trigger: AAGAGTCAGATGCTGGGGCCACGCTGGCCCCAAGGA...CTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp AGGGAAGCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTGCTTTCTGTCCATTaGACAAGGTGTCTGTGCTTC +
Preference number: 4 (lower is better)
Translates to: REAGRATPACGWGLKVDALLSVH*TRCLCF
Trigger: GAAGCACAGACACCTTGTCCAATGGACAGAAAGCAG...GGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGCTTCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp GCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCGCTTCCCAATGTTATaGCCATGGAGATCTGTGTTG +
Preference number: 4 (lower is better)
Translates to: AGRATPACGWGLKVDALPRFPML*PWRSVL
Trigger: CAACACAGATCTCCATGGCCATAACATTGGGAAGCG...AGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp GGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCCGCTTCCCAATGTTATaGCCATGGAGATCTGTGTTG +
Preference number: 4 (lower is better)
Translates to: GRTVYVIMQVPSGHCPHRRFPML*PWRSVL
Trigger: CAACACAGATCTCCATGGCCATAACATTGGGAAGCG...GCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp TGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGTCCAGGCTCGGAGCCTaGAAGAGGAAGACCCGCCAG +
Preference number: 4 (lower is better)
Translates to: CGWGLKVDALPLSLQRERSRLGA*KRKTRQ
Trigger: CTGGCGGGTCTTCCTCTTCCAGGCTCCGAGCCTGGA...CCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR CCA 90 bp GCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGGCTCTCTCAGCTCGCTaGCCATGGCCTTCAGCTTGG +
Preference number: 4 (lower is better)
Translates to: ACGWGLKVDALPLSLQREALSAR*PWPSAW
Trigger: CCAAGCTGAAGGCCATGGCCAGCGAGCTGAGAGAGC...CTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR GCA 90 bp CAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGCTGTGCTGCCATACATaGTGGCTGGGGGACTTTGGG +
Preference number: 4 (lower is better)
Translates to: QPVDGASKWMPFLCLCKELCCHT*WLGDFG
Trigger: CCCAAAGTCCCCCAGCCAGCATGTATGGCAGCACAG...CTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR GCA 90 bp AACTCCTGGCTTCTGTCTGAGCCAGGCCCCAGGATGGAGGGGTGTTGCTGGTGTCCTCATCATCTTCGTTaGCACTGCCCAGACTGGAAG +
Preference number: 4 (lower is better)
Translates to: NSWLLSEPGPRMEGCCWCPHHLR*HCPDWK
Trigger: CTTCCAGTCTGGGCAGTGGCAACGAAGATGATGAGG...ACACCAGCAACACCCCTCCATCCTGGGGCCTGGCTCAGACAGAAGCCAGGAGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR GCA 90 bp GCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTTGCAGCCTCCAAATCTaGTTTCTGTCCATTGGACAA +
Preference number: 4 (lower is better)
Translates to: AGRATPACGWGLKVDALPCSLQI*FLSIGQ
Trigger: TTGTCCAATGGACAGAAAGCAGATTTGGAGGCTGCA...AGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR GCA 90 bp GCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGTGAGCCCTTGCCTGCAGTCAGGGTCTaGGTGCACCTTTCGCACCAG +
Preference number: 4 (lower is better)
Translates to: ASKWMPFLCLCKERGEPLPAVRV*VHLSHQ
Trigger: CTGGTGCGAAAGGTGCACGCAGACCCTGACTGCAGG...CAAGGGCTCACCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR GCA 90 bp AGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGCTCATCCGCCTCCTTaGCTCGGGCCTTCTTTCCCA +
Preference number: 4 (lower is better)
Translates to: SLWMGPQSGCPSSVSAKRAHPPP*LGPSFP
Trigger: TGGGAAAGAAGGCCCGAGGCAAGGAGGCGGATGAGC...TCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR GCA 90 bp TGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGGCTCATCCGCCTCCTTaGCTCGGGCCTTCTTTCCCA +
Preference number: 4 (lower is better)
Translates to: CGWGLKVDALPLSLQRERAHPPP*LGPSFP
Trigger: TGGGAAAGAAGGCCCGAGGCAAGGAGGCGGATGAGC...CCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR CCA 90 bp ATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGTGAGCGCGACGAGGACATCGTaGTGGGGAGATGGCACAGTC +
Preference number: 4 (lower is better)
Translates to: MGPQSGCPSSVSAKREVSATRTS*WGDGTV
Trigger: GACTGTGCCATCTCCCCACCACGATGTCCTCGTCGC...GCTCACCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp AGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGATGCCACTGCCCAGACTaGAAGAAGGGCCAGGGCATG +
Preference number: 4 (lower is better)
Translates to: SLWMGPQSGCPSSVSAKRCHCPD*KKGQGM
Trigger: CATGCCCTGGCCCTTCTTCCAGTCTGGGCAGTGGCA...TCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp GCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTGCTTCAGGATTACACTaGAAATATCGCTGGGAGAAG +
Preference number: 4 (lower is better)
Translates to: AGRATPACGWGLKVDALPASGLH*KYRWEK
Trigger: CTTCTCCCAGCGATATTTCCAGTGTAATCCTGAAGC...AGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp AGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCGCTTCCCAATGTTATaGCCATGGAGATCTGTGTTG +
Preference number: 4 (lower is better)
Translates to: RQDRVCHHAGAQRALPPSRFPML*PWRSVL
Trigger: CAACACAGATCTCCATGGCCATAACATTGGGAAGCG...CGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp AGGGAAGCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCGCTCCTCCTCGTCTATaGCCCATTGCAATTTTTCAT +
Preference number: 4 (lower is better)
Translates to: REAGRATPACGWGLKVDAAPPRL*PIAIFH
Trigger: ATGAAAAATTGCAATGGGCCATAGACGAGGAGGAGC...GGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGCTTCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR CCA 90 bp GGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCGCTCCTCCTCGTCTATaGCCCATTGCAATTTTTCAT +
Preference number: 4 (lower is better)
Translates to: GRTVYVIMQVPSGHCPHRAPPRL*PIAIFH
Trigger: ATGAAAAATTGCAATGGGCCATAGACGAGGAGGAGC...GCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp GCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTGCTCCTCCTCGTCTATaGCCCATTGCAATTTTTCAT +
Preference number: 4 (lower is better)
Translates to: AGRATPACGWGLKVDALPAPPRL*PIAIFH
Trigger: ATGAAAAATTGCAATGGGCCATAGACGAGGAGGAGC...AGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR CCA 90 bp GAGGCCCTCGTGGCTGGCCCGAGGCTAGCTGAGCTCAGGCAGGACCGTGTATGTGCTCCTCCTCGTCTATaGCCCATTGCAATTTTTCAT +
Preference number: 4 (lower is better)
Translates to: EALVAGPRLAELRQDRVCAPPRL*PIAIFH
Trigger: ATGAAAAATTGCAATGGGCCATAGACGAGGAGGAGC...ACATACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp AACTCCTGGCTTCTGTCTGAGCCAGGCCCCAGGATGGAGGGGTGTTGCTGGTGTCGGCTGAATTTCTTCTaGGAGCTAACAGCAGCTGGG +
Preference number: 4 (lower is better)
Translates to: NSWLLSEPGPRMEGCCWCRLNFF*ELTAAG
Trigger: CCCAGCTGCTGTTAGCTCCCAGAAGAAATTCAGCCG...ACACCAGCAACACCCCTCCATCCTGGGGCCTGGCTCAGACAGAAGCCAGGAGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR TCA 90 bp GCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGGTACTGGTGACTTaGGAAGCCCAGAGTGAGGCA +
Preference number: 4 (lower is better)
Translates to: ACGWGLKVDALPLSLQRERVLVT*EAQSEA
Trigger: TGCCTCACTCTGGGCTTCTCAAGTCACCAGTACCCT...CTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR TCA 90 bp CAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGGCCCTTGGCCCGGTGTaGCTCCAAGATAGCTTCAAA +
Preference number: 4 (lower is better)
Translates to: QPVDGASKWMPFLCLCKEALGPV*LQDSFK
Trigger: TTTGAAGCTATCTTGGAGTCACACCGGGCCAAGGGC...CTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR TCA 90 bp GCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGGAGTCGGATACCAGCTaGCTTAGGGGTGGTTCACTG +
Preference number: 4 (lower is better)
Translates to: ACGWGLKVDALPLSLQREESDTS*LRGGSL
Trigger: CAGTGAACCACCCCTAAGTCAGCTGGTATCCGACTC...CTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR GCA 90 bp CAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGCAGAGGGGTACAAGGTaGTGTCACACGTCCCAGATC +
Preference number: 4 (lower is better)
Translates to: QPVDGASKWMPFLCLCKEQRGTR*CHTSQI
Trigger: GATCTGGGACGTGTGACAGCACCTTGTACCCCTCTG...CTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR GCA 90 bp AACTCCTGGCTTCTGTCTGAGCCAGGCCCCAGGATGGAGGGGTGTTGCTGGTGTATCCTCTTCACCTCCTaGCTCATCATCTTCGTTGCC +
Preference number: 4 (lower is better)
Translates to: NSWLLSEPGPRMEGCCWCILFTS*LIIFVA
Trigger: GGCAACGAAGATGATGAGGCAGGAGGTGAAGAGGAT...ACACCAGCAACACCCCTCCATCCTGGGGCCTGGCTCAGACAGAAGCCAGGAGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR GCA 90 bp ATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGTGAGCCTTGCCCAGATGCCGTaGCACATCGGCCTTCCTGAA +
Preference number: 4 (lower is better)
Translates to: MGPQSGCPSSVSAKREVSLAQMP*HIGLPE
Trigger: TTCAGGAAGGCCGATGTGGCACGGCATCTGGGCAAG...GCTCACCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR GCA 90 bp GCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGTTGTTCTTGCCCAGATaGCGTGCCACATCGGCCTTC +
Preference number: 4 (lower is better)
Translates to: ACGWGLKVDALPLSLQRELFLPR*RATSAF
Trigger: GAAGGCCGATGTGGCACGGCATCTGGGCAAGAACAA...CTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR GCA 90 bp GCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGTGAGCCCTTGCACGAGGTGTCTTCCTaGAGTCAGGGTCTGCGTGCA +
Preference number: 4 (lower is better)
Translates to: ASKWMPFLCLCKERGEPLHEVSS*SQGLRA
Trigger: TGCACGCAGACCCTGACTGCAGGAAGACACCTCGTG...CAAGGGCTCACCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR CCA 90 bp TGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGATCGTGGTGGGGAGATaGCACAGTCGCCTTCTGAGC +
Preference number: 4 (lower is better)
Translates to: CGWGLKVDALPLSLQRERIVVGR*HSRLLS
Trigger: GCTCAGAAGGCGACTGTGCCATCTCCCCACCACGAT...CCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp TGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTCATCAGCAGCAGAGCTaGTGCCAGAATCAGGTTCAA +
Preference number: 4 (lower is better)
Translates to: CHPSLWMGPQSGCPSSVSHQQQS*CQNQVQ
Trigger: TTGAACCTGATTCTGGCACCAGCTCTGCTGCTGATG...AGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp GACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTACTGCTTTCTGTCCATTaGACAAGGTGTCTGTGCTTC +
Preference number: 4 (lower is better)
Translates to: DRVCHHAGAQRALPPSLLLLSVH*TRCLCF
Trigger: GAAGCACAGACACCTTGTCCAATGGACAGAAAGCAG...TAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp TATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATGCCCTGCTGCTTTCTGTCCATTaGACAAGGTGTCTGTGCTTC +
Preference number: 4 (lower is better)
Translates to: YVIMQVPSGHCPHRSYALLLSVH*TRCLCF
Trigger: GAAGCACAGACACCTTGTCCAATGGACAGAAAGCAG...CAGGGCATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp GAGCTCAGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCAGGTAGAAGACGTGTaGTCTCTTGCTATAATCGCT +
Preference number: 4 (lower is better)
Translates to: ELRQDRVCHHAGAQRALPQVEDV*SLAIIA
Trigger: AGCGATTATAGCAAGAGACCACACGTCTTCTACCTG...GGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCTGAGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CCA 90 bp ATTCAGAGCAGTTTTAATGAGGGTGGAGGCTGTACAAAGGGTAGGGCCCACCAACTCACCTGCTCCTCCTaGGAGAGGCGGGTGGCAGCA +
Preference number: 4 (lower is better)
Translates to: IQSSFNEGGGCTKGRAHQLTCSS*ERRVAA
Trigger: TGCTGCCACCCGCCTCTCCCAGGAGGAGCAGGTGAG...TTGGTGGGCCCTACCCTTTGTACAGCCTCCACCCTCATTAAAACTGCTCTGAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR CCA 90 bp GCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGTGAGCCCTTGTTCAGCTTGGCCTCATaGGTCCTCACCTGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: ASKWMPFLCLCKERGEPLFSLAS*VLTCSS
Trigger: GGAGGAGCAGGTGAGGACCCATGAGGCCAAGCTGAA...CAAGGGCTCACCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR CCA 90 bp TGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGCCATGGCCTTCAGCTTaGCCTCATGGGTCCTCACCT +
Preference number: 4 (lower is better)
Translates to: CGWGLKVDALPLSLQRERPWPSA*PHGSSP
Trigger: AGGTGAGGACCCATGAGGCCAAGCTGAAGGCCATGG...CCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR CCA 90 bp AGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGATCAGCTCGCTGGCCATaGCCTTCAGCTTGGCCTCAT +
Preference number: 4 (lower is better)
Translates to: SLWMGPQSGCPSSVSAKRSARWP*PSAWPH
Trigger: ATGAGGCCAAGCTGAAGGCCATGGCCAGCGAGCTGA...TCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR TCA 90 bp TGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGGAGTCGGATACCAGCTaGCTTAGGGGTGGTTCACTG +
Preference number: 4 (lower is better)
Translates to: CGWGLKVDALPLSLQRERESDTS*LRGGSL
Trigger: CAGTGAACCACCCCTAAGTCAGCTGGTATCCGACTC...CCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR TCA 90 bp TGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTCAGCCACCAATTTGCTaGAGTCATTGTTCTTGCCCA +
Preference number: 4 (lower is better)
Translates to: CHPSLWMGPQSGCPSSVSQPPIC*SHCSCP
Trigger: TGGGCAAGAACAATGACTTCAGCAAATTGGTGGCTG...AGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR TCA 90 bp AACTCCTGGCTTCTGTCTGAGCCAGGCCCCAGGATGGAGGGGTGTTGCTGGTGTCCTTTAGAAATACCCTaGGAGCTTGGTCCAGAGTCA +
Preference number: 4 (lower is better)
Translates to: NSWLLSEPGPRMEGCCWCPLEIP*ELGPES
Trigger: TGACTCTGGACCAAGCTCTCAGGGTATTTCTAAAGG...ACACCAGCAACACCCCTCCATCCTGGGGCCTGGCTCAGACAGAAGCCAGGAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR TCA 90 bp GCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGTGAGCCCTTGAGAGGATCATGCCCTTaGGGATCCCGTGGAAGCTCT +
Preference number: 4 (lower is better)
Translates to: ASKWMPFLCLCKERGEPLRGSCP*GSRGSS
Trigger: AGAGCTTCCACGGGATCCTCAAGGGCATGATCCTCT...CAAGGGCTCACCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR GCA 90 bp GCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGTGAGCCCTTGCAGAGGGGTACAAGGTaGTGTCACACGTCCCAGATC +
Preference number: 4 (lower is better)
Translates to: ASKWMPFLCLCKERGEPLQRGTR*CHTSQI
Trigger: GATCTGGGACGTGTGACAGCACCTTGTACCCCTCTG...CAAGGGCTCACCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR GCA 90 bp ATTCAGAGCAGTTTTAATGAGGGTGGAGGCTGTACAAAGGGTAGGGCCCACCAAGACCACAGAACTCTGTaGCCCTGGTGGAGGCTGCCC +
Preference number: 4 (lower is better)
Translates to: IQSSFNEGGGCTKGRAHQDHRTL*PWWRLP
Trigger: GGGCAGCCTCCACCAGGGGCACAGAGTTCTGTGGTC...TTGGTGGGCCCTACCCTTTGTACAGCCTCCACCCTCATTAAAACTGCTCTGAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR GCA 90 bp TGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGTTGTTCTTGCCCAGATaGCGTGCCACATCGGCCTTC +
Preference number: 4 (lower is better)
Translates to: CGWGLKVDALPLSLQRERLFLPR*RATSAF
Trigger: GAAGGCCGATGTGGCACGGCATCTGGGCAAGAACAA...CCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR GCA 90 bp TGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGCTTGACTCGAAGCAGTaGTGCATAGGTGCCGTAGCG +
Preference number: 4 (lower is better)
Translates to: CGWGLKVDALPLSLQRERLDSKQ*CIGAVA
Trigger: CGCTACGGCACCTATGCAGCACTGCTTCGAGTCAAG...CCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR TCA 90 bp TGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGCTTCAAACACACAACTaGAGGAGTCAGGCCCATCCG +
Preference number: 4 (lower is better)
Translates to: CGWGLKVDALPLSLQRERLQTHN*RSQAHP
Trigger: CGGATGGGCCTGACTCCTTCAGTTGTGTGTTTGAAG...CCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR GCA 90 bp ATTCAGAGCAGTTTTAATGAGGGTGGAGGCTGTACAAAGGGTAGGGCCCACCAATCTTCCAGCCCCGCTTaGCACGAGGTGTCTTCCTGC +
Preference number: 4 (lower is better)
Translates to: IQSSFNEGGGCTKGRAHQSSSPA*HEVSSC
Trigger: GCAGGAAGACACCTCGTGGCAAGCGGGGCTGGAAGA...TTGGTGGGCCCTACCCTTTGTACAGCCTCCACCCTCATTAAAACTGCTCTGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR CCA 90 bp ATTCAGAGCAGTTTTAATGAGGGTGGAGGCTGTACAAAGGGTAGGGCCCACCAAGCGACGAGGACATCGTaGTGGGGAGATGGCACAGTC +
Preference number: 4 (lower is better)
Translates to: IQSSFNEGGGCTKGRAHQATRTS*WGDGTV
Trigger: GACTGTGCCATCTCCCCACCACGATGTCCTCGTCGC...TTGGTGGGCCCTACCCTTTGTACAGCCTCCACCCTCATTAAAACTGCTCTGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp TGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGTCAGTGGCCTCACACTaGCCTTCTCCACAAAACGGA +
Preference number: 4 (lower is better)
Translates to: CGWGLKVDALPLSLQRERSVASH*PSPQNG
Trigger: TCCGTTTTGTGGAGAAGGCCAGTGTGAGGCCACTGA...CCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp ATTCAGAGCAGTTTTAATGAGGGTGGAGGCTGTACAAAGGGTAGGGCCCACCAATGGGCTGACTCTCAATaGCAGAGTCGGCCTCCTCCC +
Preference number: 4 (lower is better)
Translates to: IQSSFNEGGGCTKGRAHQWADSQ*QSRPPP
Trigger: GGGAGGAGGCCGACTCTGCCATTGAGAGTCAGCCCA...TTGGTGGGCCCTACCCTTTGTACAGCCTCCACCCTCATTAAAACTGCTCTGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp ATTCAGAGCAGTTTTAATGAGGGTGGAGGCTGTACAAAGGGTAGGGCCCACCAATATCGCTGGGAGAAGTaGGCCAGTACACGCTCCCGC +
Preference number: 4 (lower is better)
Translates to: IQSSFNEGGGCTKGRAHQYRWEK*ASTRSR
Trigger: GCGGGAGCGTGTACTGGCCCACTTCTCCCAGCGATA...TTGGTGGGCCCTACCCTTTGTACAGCCTCCACCCTCATTAAAACTGCTCTGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp GCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGTGAGCCCTTGCGGCTGAATTTCTTCTaGGAGCTAACAGCAGCTGGG +
Preference number: 4 (lower is better)
Translates to: ASKWMPFLCLCKERGEPLRLNFF*ELTAAG
Trigger: CCCAGCTGCTGTTAGCTCCCAGAAGAAATTCAGCCG...CAAGGGCTCACCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR GCA 90 bp ATTCAGAGCAGTTTTAATGAGGGTGGAGGCTGTACAAAGGGTAGGGCCCACCAACTTGCCCAGATGCCGTaGCACATCGGCCTTCCTGAA +
Preference number: 4 (lower is better)
Translates to: IQSSFNEGGGCTKGRAHQLAQMP*HIGLPE
Trigger: TTCAGGAAGGCCGATGTGGCACGGCATCTGGGCAAG...TTGGTGGGCCCTACCCTTTGTACAGCCTCCACCCTCATTAAAACTGCTCTGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp GCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGTGAGCCCTTGCACTGGAAATATCGCTaGGAGAAGTGGGCCAGTACA +
Preference number: 4 (lower is better)
Translates to: ASKWMPFLCLCKERGEPLHWKYR*EKWAST
Trigger: TGTACTGGCCCACTTCTCCCAGCGATATTTCCAGTG...CAAGGGCTCACCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp ATTCAGAGCAGTTTTAATGAGGGTGGAGGCTGTACAAAGGGTAGGGCCCACCAATCAGCTCGCTGGCCATaGCCTTCAGCTTGGCCTCAT +
Preference number: 4 (lower is better)
Translates to: IQSSFNEGGGCTKGRAHQSARWP*PSAWPH
Trigger: ATGAGGCCAAGCTGAAGGCCATGGCCAGCGAGCTGA...TTGGTGGGCCCTACCCTTTGTACAGCCTCCACCCTCATTAAAACTGCTCTGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR TCA 90 bp ATTCAGAGCAGTTTTAATGAGGGTGGAGGCTGTACAAAGGGTAGGGCCCACCAACCACATCGGCCTTCCTaGAGCCATCGAGTCGGTATA +
Preference number: 4 (lower is better)
Translates to: IQSSFNEGGGCTKGRAHQPHRPS*SHRVGI
Trigger: TATACCGACTCGATGGCTTCAGGAAGGCCGATGTGG...TTGGTGGGCCCTACCCTTTGTACAGCCTCCACCCTCATTAAAACTGCTCTGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR TCA 90 bp TGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGCCTTTAGAAATACCCTaGGAGCTTGGTCCAGAGTCA +
Preference number: 4 (lower is better)
Translates to: CGWGLKVDALPLSLQRERPLEIP*ELGPES
Trigger: TGACTCTGGACCAAGCTCTCAGGGTATTTCTAAAGG...CCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CCA 90 bp ATTCAGAGCAGTTTTAATGAGGGTGGAGGCTGTACAAAGGGTAGGGCCCACCAACGGCTGAATTTCTTCTaGGAGCTAACAGCAGCTGGG +
Preference number: 4 (lower is better)
Translates to: IQSSFNEGGGCTKGRAHQRLNFF*ELTAAG
Trigger: CCCAGCTGCTGTTAGCTCCCAGAAGAAATTCAGCCG...TTGGTGGGCCCTACCCTTTGTACAGCCTCCACCCTCATTAAAACTGCTCTGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS GCA 90 bp AGCGCTGCGGCCAGCCGTAGCATAGGGTCTCCGCGCCGCGGTGGGTaGGCCCGTAGCGCACGGAGCAGAGCGAGCGCGAACGCAGCCGCC +
Preference number: 5 (lower is better)
Translates to: SAAASRSIGSPRRGG*ARSARSRASANAAA
Trigger: GGCGGCTGCGTTCGCGCTCGCTCTGCTCCGTGCGCTACGGGCGCACCCACCGCGGCGCGGAGACCCTATGCTACGGCTGGCCGCAGCGCT
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224556.2
CDS-3UTR CAA 90 bp CGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGGACCCCAGAGCCTTGCTaGGAGCCCACCCCACGTGAT +
Preference number: 5 (lower is better)
Translates to: RTPRPARSGPGPGGPRGWTPEPC*EPTPRD
Trigger: ATCACGTGGGGTGGGCTCCAAGCAAGGCTCTGGGGT...CCAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp CGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGGTCTGTCTCGGAGTACTaGGCTGCTCGCCCCACAGCC +
Preference number: 5 (lower is better)
Translates to: RTPRPARSGPGPGGPRGWSVSEY*AARPTA
Trigger: GGCTGTGGGGCGAGCAGCCAAGTACTCCGAGACAGA...CCAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp CTCAGCCCTGCCCTGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCATCTGTCTCGGAGTACTaGGCTGCTCGCCCCACAGCC +
Preference number: 5 (lower is better)
Translates to: LSPALPRTPRPARSGPGPSVSEY*AARPTA
Trigger: GGCTGTGGGGCGAGCAGCCAAGTACTCCGAGACAGA...TGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCAGGGCAGGGCTGAG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS CCA 90 bp GCTGAGCCCGGGGCTGGCTGGTGGGCTTGGGCCGCAGGGAAGGACTaGAGTGAGGCGGAGGGCATCCATCCTCCGTGCTCCCAGCCTGGG +
Preference number: 5 (lower is better)
Translates to: AEPGAGWWAWAAGKD*SEAEGIHPPCSQPG
Trigger: CCCAGGCTGGGAGCACGGAGGATGGATGCCCTCCGCCTCACTCCAGTCCTTCCCTGCGGCCCAAGCCCACCAGCCAGCCCCGGGCTCAGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp CCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGCCTCCGCTGACCCGCTaGATGACCTTGGGGTTAGGA +
Preference number: 5 (lower is better)
Translates to: PDTASGAVGPWTRRPSWLPPLTR*MTLGLG
Trigger: TCCTAACCCCAAGGTCATCAAGCGGGTCAGCGGAGG...CAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp CGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGGCCTCCGCTGACCCGCTaGATGACCTTGGGGTTAGGA +
Preference number: 5 (lower is better)
Translates to: RTPRPARSGPGPGGPRGWPPLTR*MTLGLG
Trigger: TCCTAACCCCAAGGTCATCAAGCGGGTCAGCGGAGG...CCAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp TGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGCCTCCGCTGACCCGCTaGATGACCTTGGGGTTAGGA +
Preference number: 5 (lower is better)
Translates to: CPGHRVRRGRALDQEALVPPLTR*MTLGLG
Trigger: TCCTAACCCCAAGGTCATCAAGCGGGTCAGCGGAGG...CACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp CCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGACCCGCTTGATGACCTaGGGGTTAGGATCGGCCAAC +
Preference number: 5 (lower is better)
Translates to: PDTASGAVGPWTRRPSWLTRLMT*GLGSAN
Trigger: GTTGGCCGATCCTAACCCCAAGGTCATCAAGCGGGT...CAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS CCA 90 bp GCCGCAACTTCCGGTTGCAGCCAGGTCCAAGGGCTGGGGTGGGCCTaGGGGCAGAAATCCCGCCCAGGTCCCAGCTCCGACTCAGGCCTC +
Preference number: 5 (lower is better)
Translates to: AATSGCSQVQGLGWA*GQKSRPGPSSDSGL
Trigger: GAGGCCTGAGTCGGAGCTGGGACCTGGGCGGGATTTCTGCCCCCAGGCCCACCCCAGCCCTTGGACCTGGCTGCAACCGGAAGTTGCGGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp CCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTATGGCAGCCACCACATaGATGCGAGTGATCCAGGAC +
Preference number: 5 (lower is better)
Translates to: PGHRVRRGRALDQEALVAMAATT*MRVIQD
Trigger: GTCCTGGATCACTCGCATCAATGTGGTGGCTGCCAT...AGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS GCA 90 bp GCCGCAGGGAAGGACTGGAGTGAGGCGGAGGGCATCCATCCTCCGTaGTCCCAGCCTGGGCCAGGGCTGCCTCTATGGTGTCCAGCTCCT +
Preference number: 5 (lower is better)
Translates to: AAGKDWSEAEGIHPP*SQPGPGLPLWCPAP
Trigger: AGGAGCTGGACACCATAGAGGCAGCCCTGGCCCAGGCTGGGAGCACGGAGGATGGATGCCCTCCGCCTCACTCCAGTCCTTCCCTGCGGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS CCA 90 bp CCTCTAGCCGCAACTTCCGGTTGCAGCCAGGTCCAAGGGCTGGGGTaGGCCTGGGGGCAGAAATCCCGCCCAGGTCCCAGCTCCGACTCA +
Preference number: 5 (lower is better)
Translates to: PLAATSGCSQVQGLG*AWGQKSRPGPSSDS
Trigger: TGAGTCGGAGCTGGGACCTGGGCGGGATTTCTGCCCCCAGGCCCACCCCAGCCCTTGGACCTGGCTGCAACCGGAAGTTGCGGCTAGAGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp GAGGCCCTCGTGGCTGGCCCGAGGCTAGCTGAGCTCAGGCAGGACCGTGTATGTAGCCACCCCAGAGCCTaGCTTGGAGCCCACCCCACG +
Preference number: 5 (lower is better)
Translates to: EALVAGPRLAELRQDRVCSHPRA*LGAHPT
Trigger: CGTGGGGTGGGCTCCAAGCAAGGCTCTGGGGTGGCT...ACATACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS CCA 90 bp CTGGGCCTTCGGGGAGCCAGCGACGAGGACATCGTGGTGGGGAGATaGCACAGTCGCCTTCTGAGCAGAAGCGCATGGCACCCTGGGCCA +
Preference number: 5 (lower is better)
Translates to: LGLRGASDEDIVVGR*HSRLLSRSAWHPGP
Trigger: TGGCCCAGGGTGCCATGCGCTTCTGCTCAGAAGGCGACTGTGCCATCTCCCCACCACGATGTCCTCGTCGCTGGCTCCCCGAAGGCCCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224447.2
ENSMUST00000225323.2
ENSMUST00000225781.2
CDS CCA 90 bp GTCGTGAGGCAGGTGGTTGGGCAGTGCCATGGGGGCCCTCAGAGCTaGGCTGACTCTCAATGGCAGAGTCGGCCTCCTCCCGCTCAGCCA +
Preference number: 5 (lower is better)
Translates to: VVRQVVGQCHGGPQS*ADSQWQSRPPPAQP
Trigger: TGGCTGAGCGGGAGGAGGCCGACTCTGCCATTGAGAGTCAGCCCAGCTCTGAGGGCCCCCATGGCACTGCCCAACCACCTGCCTCACGAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp CAGGAGGCCCTCGTGGCTGGCCCGAGGCTAGCTGAGCTCAGGCAGGACCGTGTACACCTCAGGGGCACCTaGTCCAGGTCTGTCTCGGAG +
Preference number: 5 (lower is better)
Translates to: QEALVAGPRLAELRQDRVHLRGT*SRSVSE
Trigger: CTCCGAGACAGACCTGGACAAGGTGCCCCTGAGGTG...TACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTCCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp CGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGGTCTGCTTTCTGTCCATaGGACAAGGTGTCTGTGCTT +
Preference number: 5 (lower is better)
Translates to: RTPRPARSGPGPGGPRGWSAFCP*DKVSVL
Trigger: AAGCACAGACACCTTGTCCAATGGACAGAAAGCAGA...CCAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp TGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGTCGCCAGCCACCAATTaGCTGAAGTCATTGTTCTTG +
Preference number: 5 (lower is better)
Translates to: CPGHRVRRGRALDQEALVSPATN*LKSLFL
Trigger: CAAGAACAATGACTTCAGCAAATTGGTGGCTGGCGA...CACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp GCCCACCAAAGAAGGGAAGCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCGCCATGGCCTTCAGCTaGGCCTCATGGGTCCTCACC +
Preference number: 5 (lower is better)
Translates to: AHQRREAGRATPACGWGLAMAFS*ASWVLT
Trigger: GGTGAGGACCCATGAGGCCAAGCTGAAGGCCATGGC...GAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGCTTCCCTTCTTTGGTGGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS GCA 90 bp GTCTGCGTGCACCTTTCGCACCAGGGCCCCGTGCTTGTAGACAGCTaGCCCGGGCTCAGGAGTCAGGTCCAGGAAGGGGCTGGAACTGCT +
Preference number: 5 (lower is better)
Translates to: VCVHLSHQGPVLVDS*PGLRSQVQEGAGTA
Trigger: AGCAGTTCCAGCCCCTTCCTGGACCTGACTCCTGAGCCCGGGGCAGCTGTCTACAAGCACGGGGCCCTGGTGCGAAAGGTGCACGCAGAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp CCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTAATTTGCTGAAGTCATaGTTCTTGCCCAGATGCCGT +
Preference number: 5 (lower is better)
Translates to: PGHRVRRGRALDQEALVANLLKS*FLPRCR
Trigger: ACGGCATCTGGGCAAGAACAATGACTTCAGCAAATT...AGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp GAGGCCCTCGTGGCTGGCCCGAGGCTAGCTGAGCTCAGGCAGGACCGTGTATGTCTCTTCCAGCCCCGCTaGCCACGAGGTGTCTTCCTG +
Preference number: 5 (lower is better)
Translates to: EALVAGPRLAELRQDRVCLFQPR*PRGVFL
Trigger: CAGGAAGACACCTCGTGGCAAGCGGGGCTGGAAGAG...ACATACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp CAGGAGGCCCTCGTGGCTGGCCCGAGGCTAGCTGAGCTCAGGCAGGACCGTGTAGATCCAGGACTGCATTaGCTCCAGGCTCGGAGCCTG +
Preference number: 5 (lower is better)
Translates to: QEALVAGPRLAELRQDRVDPGLH*LQARSL
Trigger: CAGGCTCCGAGCCTGGAGCAAATGCAGTCCTGGATC...TACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTCCTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp GAGGCCCTCGTGGCTGGCCCGAGGCTAGCTGAGCTCAGGCAGGACCGTGTATGTTGCTCATCCGCCTCCTaGCCTCGGGCCTTCTTTCCC +
Preference number: 5 (lower is better)
Translates to: EALVAGPRLAELRQDRVCCSSAS*PRAFFP
Trigger: GGGAAAGAAGGCCCGAGGCAAGGAGGCGGATGAGCA...ACATACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS GCA 90 bp CCGCTGCTCATCCGCCTCCTTGCCTCGGGCCTTCTTTCCCAGATGTaGAGCCCGGTGCTCTCTCAGCTCGCTGGCCATGGCCTTCAGCTT +
Preference number: 5 (lower is better)
Translates to: PLLIRLLASGLLSQM*SPVLSQLAGHGLQL
Trigger: AAGCTGAAGGCCATGGCCAGCGAGCTGAGAGAGCACCGGGCTGCACATCTGGGAAAGAAGGCCCGAGGCAAGGAGGCGGATGAGCAGCGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp CTCAGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCACACCTCAGGGGCACCTaGTCCAGGTCTGTCTCGGAG +
Preference number: 5 (lower is better)
Translates to: LRQDRVCHHAGAQRALPPHLRGT*SRSVSE
Trigger: CTCCGAGACAGACCTGGACAAGGTGCCCCTGAGGTG...TGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCTGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp GCCCACCAAAGAAGGGAAGCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAGTCGCCACCATCATaGAGGCCCTCCAGGTTTCCG +
Preference number: 5 (lower is better)
Translates to: AHQRREAGRATPACGWGLKSPPS*RPSRFP
Trigger: CGGAAACCTGGAGGGCCTCAATGATGGTGGCGACTT...GAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGCTTCCCTTCTTTGGTGGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CAA 90 bp CAGGAGGCCCTCGTGGCTGGCCCGAGGCTAGCTGAGCTCAGGCAGGACCGTGTAAAGTCGCCACCATCATaGAGGCCCTCCAGGTTTCCG +
Preference number: 5 (lower is better)
Translates to: QEALVAGPRLAELRQDRVKSPPS*RPSRFP
Trigger: CGGAAACCTGGAGGGCCTCAATGATGGTGGCGACTT...TACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTCCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp CTCAGCCCTGCCCTGCCCCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCATGCAATTTTTCATTCTaGATGGAGCTGTACAAGGCC +
Preference number: 5 (lower is better)
Translates to: LSPALPRTPRPARSGPGPCNFSF*MELYKA
Trigger: GGCCTTGTACAGCTCCATCAAGAATGAAAAATTGCA...TGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGGGGCAGGGCAGGGCTGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp GCCCACCAAAGAAGGGAAGCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCACCCGCTTGATGACCTaGGGGTTAGGATCGGCCAAC +
Preference number: 5 (lower is better)
Translates to: AHQRREAGRATPACGWGLTRLMT*GLGSAN
Trigger: GTTGGCCGATCCTAACCCCAAGGTCATCAAGCGGGT...GAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGCTTCCCTTCTTTGGTGGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR CAA 90 bp GGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCGATCCAGGACTGCATTaGCTCCAGGCTCGGAGCCTG +
Preference number: 5 (lower is better)
Translates to: GRTVYVIMQVPSGHCPHRDPGLH*LQARSL
Trigger: CAGGCTCCGAGCCTGGAGCAAATGCAGTCCTGGATC...GCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp GAGCTCAGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCTGCTCATCCGCCTCCTaGCCTCGGGCCTTCTTTCCC +
Preference number: 5 (lower is better)
Translates to: ELRQDRVCHHAGAQRALPCSSAS*PRAFFP
Trigger: GGGAAAGAAGGCCCGAGGCAAGGAGGCGGATGAGCA...GGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCTGAGCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp AGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGGCCGCCTTTTTCTTCTaGCGGCTCTGCAGGCGGCTG +
Preference number: 5 (lower is better)
Translates to: RQDRVCHHAGAQRALPPSAAFFF*RLCRRL
Trigger: CAGCCGCCTGCAGAGCCGCAAGAAGAAAAAGGCGGC...CGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000224556.2
CDS CCA 90 bp GGGCCTTCTTTCCCAGATGTGCAGCCCGGTGCTCTCTCAGCTCGCTaGCCATGGCCTTCAGCTTGGCCTCATGGGTCCTCACCTGCTCCT +
Preference number: 5 (lower is better)
Translates to: GPSFPDVQPGALSAR*PWPSAWPHGSSPAP
Trigger: AGGAGCAGGTGAGGACCCATGAGGCCAAGCTGAAGGCCATGGCCAGCGAGCTGAGAGAGCACCGGGCTGCACATCTGGGAAAGAAGGCCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp CCGGACACCGCGTCCGGCGCGGTCGGGCCCTGGACCAGGAGGCCCTCGTGGCTGCTCGTCTATGGCCCATaGCAATTTTTCATTCTTGAT +
Preference number: 5 (lower is better)
Translates to: PDTASGAVGPWTRRPSWLLVYGP*QFFILD
Trigger: ATCAAGAATGAAAAATTGCAATGGGCCATAGACGAG...CAGCCACGAGGGCCTCCTGGTCCAGGGCCCGACCGCGCCGGACGCGGTGTCCGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp CAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCACCCGCTTGATGACCTaGGGGTTAGGATCGGCCAAC +
Preference number: 5 (lower is better)
Translates to: QAVPPQPVDGASKWMPFLTRLMT*GLGSAN
Trigger: GTTGGCCGATCCTAACCCCAAGGTCATCAAGCGGGT...GAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR CAA 90 bp TGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATGCCCCTCTTCCAGCCCCGCTaGCCACGAGGTGTCTTCCTG +
Preference number: 5 (lower is better)
Translates to: CMSSCRCPAGTAPIAPMPLFQPR*PRGVFL
Trigger: CAGGAAGACACCTCGTGGCAAGCGGGGCTGGAAGAG...GGGCATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp AGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGGATCCAGGACTGCATTaGCTCCAGGCTCGGAGCCTG +
Preference number: 5 (lower is better)
Translates to: RQDRVCHHAGAQRALPPSDPGLH*LQARSL
Trigger: CAGGCTCCGAGCCTGGAGCAAATGCAGTCCTGGATC...CGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp CAGGAGGCCCTCGTGGCTGGCCCGAGGCTAGCTGAGCTCAGGCAGGACCGTGTAATGGCAGCCACCACATaGATGCGAGTGATCCAGGAC +
Preference number: 5 (lower is better)
Translates to: QEALVAGPRLAELRQDRVMAATT*MRVIQD
Trigger: GTCCTGGATCACTCGCATCAATGTGGTGGCTGCCAT...TACACGGTCCTGCCTGAGCTCAGCTAGCCTCGGGCCAGCCACGAGGGCCTCCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp TGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATGCCCGCCATGGCCTTCAGCTaGGCCTCATGGGTCCTCACC +
Preference number: 5 (lower is better)
Translates to: CMSSCRCPAGTAPIAPMPAMAFS*ASWVLT
Trigger: GGTGAGGACCCATGAGGCCAAGCTGAAGGCCATGGC...GGGCATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp TATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATGCCCTGTGCTCATCCGCCTCCTaGCCTCGGGCCTTCTTTCCC +
Preference number: 5 (lower is better)
Translates to: YVIMQVPSGHCPHRSYALCSSAS*PRAFFP
Trigger: GGGAAAGAAGGCCCGAGGCAAGGAGGCGGATGAGCA...CAGGGCATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS GCA 90 bp CAAACTCCAGGTAGGCCTCCTTCTGCCGCTGCTCATCCGCCTCCTTaGCTCGGGCCTTCTTTCCCAGATGTGCAGCCCGGTGCTCTCTCA +
Preference number: 5 (lower is better)
Translates to: QTPGRPPSAAAHPPP*LGPSFPDVQPGALS
Trigger: TGAGAGAGCACCGGGCTGCACATCTGGGAAAGAAGGCCCGAGGCAAGGAGGCGGATGAGCAGCGGCAGAAGGAGGCCTACCTGGAGTTTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS GCA 90 bp AGCCTGGGCCAGGGCTGCCTCTATGGTGTCCAGCTCCTCGCTGGCTaGCTTCATCTTGACTCGAAGCAGTGCTGCATAGGTGCCGTAGCG +
Preference number: 5 (lower is better)
Translates to: SLGQGCLYGVQLLAG*LHLDSKQCCIGAVA
Trigger: CGCTACGGCACCTATGCAGCACTGCTTCGAGTCAAGATGAAGGCAGCCAGCGAGGAGCTGGACACCATAGAGGCAGCCCTGGCCCAGGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp ACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATACCCCAGAGCCTTGCTaGGAGCCCACCCCACGTGAT +
Preference number: 5 (lower is better)
Translates to: TVYVIMQVPSGHCPHRSYTPEPC*EPTPRD
Trigger: ATCACGTGGGGTGGGCTCCAAGCAAGGCTCTGGGGT...ATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp ACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATCACCTCAGGGGCACCTaGTCCAGGTCTGTCTCGGAG +
Preference number: 5 (lower is better)
Translates to: TVYVIMQVPSGHCPHRSYHLRGT*SRSVSE
Trigger: CTCCGAGACAGACCTGGACAAGGTGCCCCTGAGGTG...ATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp TGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTCTCTTCCAGCCCCGCTaGCCACGAGGTGTCTTCCTG +
Preference number: 5 (lower is better)
Translates to: CHPSLWMGPQSGCPSSVSLFQPR*PRGVFL
Trigger: CAGGAAGACACCTCGTGGCAAGCGGGGCTGGAAGAG...AGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR CAA 90 bp TGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATGCCCGATCCAGGACTGCATTaGCTCCAGGCTCGGAGCCTG +
Preference number: 5 (lower is better)
Translates to: CMSSCRCPAGTAPIAPMPDPGLH*LQARSL
Trigger: CAGGCTCCGAGCCTGGAGCAAATGCAGTCCTGGATC...GGGCATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp GCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGTGAGCCCTTGAGCCACCCCAGAGCCTaGCTTGGAGCCCACCCCACG +
Preference number: 5 (lower is better)
Translates to: ASKWMPFLCLCKERGEPLSHPRA*LGAHPT
Trigger: CGTGGGGTGGGCTCCAAGCAAGGCTCTGGGGTGGCT...CAAGGGCTCACCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CAA 90 bp AACTCCTGGCTTCTGTCTGAGCCAGGCCCCAGGATGGAGGGGTGTTGCTGGTGTCCTCCGCTGACCCGCTaGATGACCTTGGGGTTAGGA +
Preference number: 5 (lower is better)
Translates to: NSWLLSEPGPRMEGCCWCPPLTR*MTLGLG
Trigger: TCCTAACCCCAAGGTCATCAAGCGGGTCAGCGGAGG...ACACCAGCAACACCCCTCCATCCTGGGGCCTGGCTCAGACAGAAGCCAGGAGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR CAA 90 bp GAGCTCAGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCATGGCAGCCACCACATaGATGCGAGTGATCCAGGAC +
Preference number: 5 (lower is better)
Translates to: ELRQDRVCHHAGAQRALPMAATT*MRVIQD
Trigger: GTCCTGGATCACTCGCATCAATGTGGTGGCTGCCAT...GGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCTGAGCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp AGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTGGCTGCCTTCATCTaGACTCGAAGCAGTGCTGCA +
Preference number: 5 (lower is better)
Translates to: RQDRVCHHAGAQRALPPSLAAFI*TRSSAA
Trigger: TGCAGCACTGCTTCGAGTCAAGATGAAGGCAGCCAG...CGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp GAGCTCAGGCAGGACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCTGGCTGCCTTCATCTaGACTCGAAGCAGTGCTGCA +
Preference number: 5 (lower is better)
Translates to: ELRQDRVCHHAGAQRALPLAAFI*TRSSAA
Trigger: TGCAGCACTGCTTCGAGTCAAGATGAAGGCAGCCAG...GGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGTCCTGCCTGAGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS TCA 90 bp GGCCATTCAGTGGCCTCACACTGGCCTTCTCCACAAAACGGAAGATaGCCACAGAACTCTGTGCCCCTGGTGGAGGCTGCCCAGTGGGTG +
Preference number: 5 (lower is better)
Translates to: GHSVASHWPSPQNGR*PQNSVPLVEAAQWV
Trigger: CACCCACTGGGCAGCCTCCACCAGGGGCACAGAGTTCTGTGGTCATCTTCCGTTTTGTGGAGAAGGCCAGTGTGAGGCCACTGAATGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS CCA 90 bp GGTACAAGGTGCTGTCACACGTCCCAGATCCCGGCCTCGAGGACCTaGGCCCACCACTCGTCGTATAAGGGATCCTGTGCTGCCATACAT +
Preference number: 5 (lower is better)
Translates to: GTRCCHTSQIPASRT*AHHSSYKGSCAAIH
Trigger: ATGTATGGCAGCACAGGATCCCTTATACGACGAGTGGTGGGCCCAGGTCCTCGAGGCCGGGATCTGGGACGTGTGACAGCACCTTGTACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224447.2
ENSMUST00000225323.2
CDS CCA 90 bp CCGTCCTCTGAGGACAGGGCTTCAGGATTACACTGGAAATATCGCTaGGAGAAGTGGGCCAGTACACGCTCCCGCTCCTGGGTCTCACCC +
Preference number: 5 (lower is better)
Translates to: PSSEDRASGLHWKYR*EKWASTRSRSWVSP
Trigger: GGGTGAGACCCAGGAGCGGGAGCGTGTACTGGCCCACTTCTCCCAGCGATATTTCCAGTGTAATCCTGAAGCCCTGTCCTCAGAGGACGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp GCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGGCCATGGCCTTCAGCTaGGCCTCATGGGTCCTCACC +
Preference number: 5 (lower is better)
Translates to: ACGWGLKVDALPLSLQREAMAFS*ASWVLT
Trigger: GGTGAGGACCCATGAGGCCAAGCTGAAGGCCATGGC...CTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR CAA 90 bp TGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATGCCCCTGGCTGCCTTCATCTaGACTCGAAGCAGTGCTGCA +
Preference number: 5 (lower is better)
Translates to: CMSSCRCPAGTAPIAPMPLAAFI*TRSSAA
Trigger: TGCAGCACTGCTTCGAGTCAAGATGAAGGCAGCCAG...GGGCATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS GCA 90 bp GCGGGTAGCCAGGGCGTGGTGGATGCTGATAGCATTCTTCAGCTCTaGCTCGGAAAGAGCCTTCCCAGGCTGATACTCCTCCTTCTGCAG +
Preference number: 5 (lower is better)
Translates to: AGSQGVVDADSILQL*LGKSLPRLILLLLQ
Trigger: CTGCAGAAGGAGGAGTATCAGCCTGGGAAGGCTCTTTCCGAGGCAGAGCTGAAGAATGCTATCAGCATCCACCACGCCCTGGCTACCCGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp AGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAACCCCAGAGCCTTGCTaGGAGCCCACCCCACGTGAT +
Preference number: 5 (lower is better)
Translates to: SLWMGPQSGCPSSVSAKRTPEPC*EPTPRD
Trigger: ATCACGTGGGGTGGGCTCCAAGCAAGGCTCTGGGGT...TCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CAA 90 bp AGGGAAGCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCTCTGCTTTCTGTCCATaGGACAAGGTGTCTGTGCTT +
Preference number: 5 (lower is better)
Translates to: REAGRATPACGWGLKVDASAFCP*DKVSVL
Trigger: AAGCACAGACACCTTGTCCAATGGACAGAAAGCAGA...GGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGCTTCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CAA 90 bp GGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCGCCAGCCACCAATTaGCTGAAGTCATTGTTCTTG +
Preference number: 5 (lower is better)
Translates to: GRATPACGWGLKVDALPLSPATN*LKSLFL
Trigger: CAAGAACAATGACTTCAGCAAATTGGTGGCTGGCGA...CAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CAA 90 bp TGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGGCCATGGCCTTCAGCTaGGCCTCATGGGTCCTCACC +
Preference number: 5 (lower is better)
Translates to: CGWGLKVDALPLSLQRERAMAFS*ASWVLT
Trigger: GGTGAGGACCCATGAGGCCAAGCTGAAGGCCATGGC...CCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR CAA 90 bp TGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGTGCTCATCCGCCTCCTaGCCTCGGGCCTTCTTTCCC +
Preference number: 5 (lower is better)
Translates to: CGWGLKVDALPLSLQRERCSSAS*PRAFFP
Trigger: GGGAAAGAAGGCCCGAGGCAAGGAGGCGGATGAGCA...CCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS TCA 90 bp GGGCTGCCTCTATGGTGTCCAGCTCCTCGCTGGCTGCCTTCATCTTaGCTCGAAGCAGTGCTGCATAGGTGCCGTAGCGGGATTTCTCAA +
Preference number: 5 (lower is better)
Translates to: GLPLWCPAPRWLPSS*LEAVLHRCRSGISQ
Trigger: TTGAGAAATCCCGCTACGGCACCTATGCAGCACTGCTTCGAGTCAAGATGAAGGCAGCCAGCGAGGAGCTGGACACCATAGAGGCAGCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS GCA 90 bp CTCCGAGGCCTCGAACACCTCATCATCCACATCCTCTTCACCTCCTaGCTCATCATCTTCGTTGCCACTGCCCAGACTGGAAGAAGGGCC +
Preference number: 5 (lower is better)
Translates to: LRGLEHLIIHILFTS*LIIFVATAQTGRRA
Trigger: GGCCCTTCTTCCAGTCTGGGCAGTGGCAACGAAGATGATGAGGCAGGAGGTGAAGAGGATGTGGATGATGAGGTGTTCGAGGCCTCGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS GCA 90 bp GTGCAGCCTCCAAATCTGCTTTCTGTCCATTGGACAAGGTGTCTGTaGTTCCCAGGGCCAGCCGCTCTGTGCTGTCCAGCTCTGAGTCTG +
Preference number: 5 (lower is better)
Translates to: VQPPNLLSVHWTRCL*FPGPAALCCPALSL
Trigger: CAGACTCAGAGCTGGACAGCACAGAGCGGCTGGCCCTGGGAAGCACAGACACCTTGTCCAATGGACAGAAAGCAGATTTGGAGGCTGCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS GCA 90 bp GTCCAGCTCCTCGCTGGCTGCCTTCATCTTGACTCGAAGCAGTGCTaGATAGGTGCCGTAGCGGGATTTCTCAAACTCCAGGTAGGCCTC +
Preference number: 5 (lower is better)
Translates to: VQLLAGCLHLDSKQC*IGAVAGFLKLQVGL
Trigger: GAGGCCTACCTGGAGTTTGAGAAATCCCGCTACGGCACCTATGCAGCACTGCTTCGAGTCAAGATGAAGGCAGCCAGCGAGGAGCTGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS GCA 90 bp GGTGTCCAGCTCCTCGCTGGCTGCCTTCATCTTGACTCGAAGCAGTaGTGCATAGGTGCCGTAGCGGGATTTCTCAAACTCCAGGTAGGC +
Preference number: 5 (lower is better)
Translates to: GVQLLAGCLHLDSKQ*CIGAVAGFLKLQVG
Trigger: GCCTACCTGGAGTTTGAGAAATCCCGCTACGGCACCTATGCAGCACTGCTTCGAGTCAAGATGAAGGCAGCCAGCGAGGAGCTGGACACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS CCA 90 bp GAGGACAGGGCTTCAGGATTACACTGGAAATATCGCTGGGAGAAGTaGGCCAGTACACGCTCCCGCTCCTGGGTCTCACCCATTAAGGCC +
Preference number: 5 (lower is better)
Translates to: EDRASGLHWKYRWEK*ASTRSRSWVSPIKA
Trigger: GGCCTTAATGGGTGAGACCCAGGAGCGGGAGCGTGTACTGGCCCACTTCTCCCAGCGATATTTCCAGTGTAATCCTGAAGCCCTGTCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp AGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAAAGTCGCCACCATCATaGAGGCCCTCCAGGTTTCCG +
Preference number: 5 (lower is better)
Translates to: SLWMGPQSGCPSSVSAKRKSPPS*RPSRFP
Trigger: CGGAAACCTGGAGGGCCTCAATGATGGTGGCGACTT...TCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CAA 90 bp GGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTGCAATTTTTCATTCTaGATGGAGCTGTACAAGGCC +
Preference number: 5 (lower is better)
Translates to: GRATPACGWGLKVDALPLCNFSF*MELYKA
Trigger: GGCCTTGTACAGCTCCATCAAGAATGAAAAATTGCA...CAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR CAA 90 bp ATTCAGAGCAGTTTTAATGAGGGTGGAGGCTGTACAAAGGGTAGGGCCCACCAATCTGTCTCGGAGTACTaGGCTGCTCGCCCCACAGCC +
Preference number: 5 (lower is better)
Translates to: IQSSFNEGGGCTKGRAHQSVSEY*AARPTA
Trigger: GGCTGTGGGGCGAGCAGCCAAGTACTCCGAGACAGA...TTGGTGGGCCCTACCCTTTGTACAGCCTCCACCCTCATTAAAACTGCTCTGAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CAA 90 bp ACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATTCTGCTTTCTGTCCATaGGACAAGGTGTCTGTGCTT +
Preference number: 5 (lower is better)
Translates to: TVYVIMQVPSGHCPHRSYSAFCP*DKVSVL
Trigger: AAGCACAGACACCTTGTCCAATGGACAGAAAGCAGA...ATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp ACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATTCGCCAGCCACCAATTaGCTGAAGTCATTGTTCTTG +
Preference number: 5 (lower is better)
Translates to: TVYVIMQVPSGHCPHRSYSPATN*LKSLFL
Trigger: CAAGAACAATGACTTCAGCAAATTGGTGGCTGGCGA...ATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp CAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCCTCGTCTATGGCCCATaGCAATTTTTCATTCTTGAT +
Preference number: 5 (lower is better)
Translates to: QAVPPQPVDGASKWMPFLLVYGP*QFFILD
Trigger: ATCAAGAATGAAAAATTGCAATGGGCCATAGACGAG...GAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR CAA 90 bp TGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGATGGCAGCCACCACATaGATGCGAGTGATCCAGGAC +
Preference number: 5 (lower is better)
Translates to: CGWGLKVDALPLSLQRERMAATT*MRVIQD
Trigger: GTCCTGGATCACTCGCATCAATGTGGTGGCTGCCAT...CCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS-3UTR CAA 90 bp GCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGTGAGCCCTTGCTGGCTGCCTTCATCTaGACTCGAAGCAGTGCTGCA +
Preference number: 5 (lower is better)
Translates to: ASKWMPFLCLCKERGEPLLAAFI*TRSSAA
Trigger: TGCAGCACTGCTTCGAGTCAAGATGAAGGCAGCCAG...CAAGGGCTCACCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS CCA 90 bp TGGAAATATCGCTGGGAGAAGTGGGCCAGTACACGCTCCCGCTCCTaGGTCTCACCCATTAAGGCCAGCTCCTTTAGAAATACCCTGAGA +
Preference number: 5 (lower is better)
Translates to: WKYRWEKWASTRSRS*VSPIKASSFRNTLR
Trigger: TCTCAGGGTATTTCTAAAGGAGCTGGCCTTAATGGGTGAGACCCAGGAGCGGGAGCGTGTACTGGCCCACTTCTCCCAGCGATATTTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp TGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATGCCCTGCAATTTTTCATTCTaGATGGAGCTGTACAAGGCC +
Preference number: 5 (lower is better)
Translates to: CMSSCRCPAGTAPIAPMPCNFSF*MELYKA
Trigger: GGCCTTGTACAGCTCCATCAAGAATGAAAAATTGCA...GGGCATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp TATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATGCCCTGTGCAATTTTTCATTCTaGATGGAGCTGTACAAGGCC +
Preference number: 5 (lower is better)
Translates to: YVIMQVPSGHCPHRSYALCNFSF*MELYKA
Trigger: GGCCTTGTACAGCTCCATCAAGAATGAAAAATTGCA...CAGGGCATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp ACCGTGTATGTCATCATGCAGGTGCCCAGCGGGCACTGCCCCCATCGCTCCTATCTCGTCTATGGCCCATaGCAATTTTTCATTCTTGAT +
Preference number: 5 (lower is better)
Translates to: TVYVIMQVPSGHCPHRSYLVYGP*QFFILD
Trigger: ATCAAGAATGAAAAATTGCAATGGGCCATAGACGAG...ATAGGAGCGATGGGGGCAGTGCCCGCTGGGCACCTGCATGATGACATACACGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS-3UTR CAA 90 bp GCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGTGAGCCCTTGAATTTGCTGAAGTCATaGTTCTTGCCCAGATGCCGT +
Preference number: 5 (lower is better)
Translates to: ASKWMPFLCLCKERGEPLNLLKS*FLPRCR
Trigger: ACGGCATCTGGGCAAGAACAATGACTTCAGCAAATT...CAAGGGCTCACCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
CDS-3UTR CAA 90 bp ATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGTGAGCCTCGTCTATGGCCCATaGCAATTTTTCATTCTTGAT +
Preference number: 5 (lower is better)
Translates to: MGPQSGCPSSVSAKREVSLVYGP*QFFILD
Trigger: ATCAAGAATGAAAAATTGCAATGGGCCATAGACGAG...GCTCACCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
CDS GCA 72 bp GCCAGCCGTAGCATAGGGTCTCCGCGCCGCGGTGGGTaGGCCCGTAGCGCACGGAGCAGAGCGAGCGCGAAC +
Preference number: 6 (lower is better)
Translates to: ASRSIGSPRRGG*ARSARSRASAN
Trigger: GTTCGCGCTCGCTCTGCTCCGTGCGCTACGGGCGCACCCACCGCGGCGCGGAGACCCTATGCTACGGCTGGC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224556.2
CDS GCA 72 bp CACCTTTCGCACCAGGGCCCCGTGCTTGTAGACAGCTaGCCCGGGCTCAGGAGTCAGGTCCAGGAAGGGGCT +
Preference number: 6 (lower is better)
Translates to: HLSHQGPVLVDS*PGLRSQVQEGA
Trigger: AGCCCCTTCCTGGACCTGACTCCTGAGCCCGGGGCAGCTGTCTACAAGCACGGGGCCCTGGTGCGAAAGGTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS GCA 72 bp GGGGTGGGACCAATGGTCCACGTGAGGGGTCCCTGCTaGCAGGAAGAACAGAGCCTCCTCCAGCTGGGAGTG +
Preference number: 6 (lower is better)
Translates to: GVGPMVHVRGPC*QEEQSLLQLGV
Trigger: CACTCCCAGCTGGAGGAGGCTCTGTTCTTCCTGGCAGCAGGGACCCCTCACGTGGACCATTGGTCCCACCCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS GCA 72 bp ATCCGCCTCCTTGCCTCGGGCCTTCTTTCCCAGATGTaGAGCCCGGTGCTCTCTCAGCTCGCTGGCCATGGC +
Preference number: 6 (lower is better)
Translates to: IRLLASGLLSQM*SPVLSQLAGHG
Trigger: GCCATGGCCAGCGAGCTGAGAGAGCACCGGGCTGCACATCTGGGAAAGAAGGCCCGAGGCAAGGAGGCGGAT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS GCA 72 bp GGTAGGCCTCCTTCTGCCGCTGCTCATCCGCCTCCTTaGCTCGGGCCTTCTTTCCCAGATGTGCAGCCCGGT +
Preference number: 6 (lower is better)
Translates to: GRPPSAAAHPPP*LGPSFPDVQPG
Trigger: ACCGGGCTGCACATCTGGGAAAGAAGGCCCGAGGCAAGGAGGCGGATGAGCAGCGGCAGAAGGAGGCCTACC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS GCA 72 bp AAGGACTGGAGTGAGGCGGAGGGCATCCATCCTCCGTaGTCCCAGCCTGGGCCAGGGCTGCCTCTATGGTGT +
Preference number: 6 (lower is better)
Translates to: KDWSEAEGIHPP*SQPGPGLPLWC
Trigger: ACACCATAGAGGCAGCCCTGGCCCAGGCTGGGAGCACGGAGGATGGATGCCCTCCGCCTCACTCCAGTCCTT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS CAA 90 bp GGGCTGGAACTGCTGCCACTGCCTCCGCTGACCCGCTTGATGACCTaGGGGTTAGGATCGGCCAACTCGGACAGAGACCGTCGCAGCTCC +
Preference number: 6 (lower is better)
Translates to: GLELLPLPPLTRLMT*GLGSANSDRDRRSS
Trigger: GGAGCTGCGACGGTCTCTGTCCGAGTTGGCCGATCCTAACCCCAAGGTCATCAAGCGGGTCAGCGGAGGCAGTGGCAGCAGTTCCAGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS GCA 72 bp TCTGGGGTGGGACCAATGGTCCACGTGAGGGGTCCCTaGTGCCAGGAAGAACAGAGCCTCCTCCAGCTGGGA +
Preference number: 6 (lower is better)
Translates to: SGVGPMVHVRGP*CQEEQSLLQLG
Trigger: TCCCAGCTGGAGGAGGCTCTGTTCTTCCTGGCAGCAGGGACCCCTCACGTGGACCATTGGTCCCACCCCAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS GCA 72 bp CCGCTTGCCACGAGGTGTCTTCCTGCAGTCAGGGTCTaGGTGCACCTTTCGCACCAGGGCCCCGTGCTTGTA +
Preference number: 6 (lower is better)
Translates to: PLATRCLPAVRV*VHLSHQGPVLV
Trigger: TACAAGCACGGGGCCCTGGTGCGAAAGGTGCACGCAGACCCTGACTGCAGGAAGACACCTCGTGGCAAGCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS CAA 72 bp GGGCTGGAACTGCTGCCACTGCCTCCGCTGACCCGCTaGATGACCTTGGGGTTAGGATCGGCCAACTCGGAC +
Preference number: 6 (lower is better)
Translates to: GLELLPLPPLTR*MTLGLGSANSD
Trigger: GTCCGAGTTGGCCGATCCTAACCCCAAGGTCATCAAGCGGGTCAGCGGAGGCAGTGGCAGCAGTTCCAGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS CAA 72 bp CCCTTGAGGATCCCGTGGAAGCTCTTCCAGCCCCGCTaGCCACGAGGTGTCTTCCTGCAGTCAGGGTCTGCG +
Preference number: 6 (lower is better)
Translates to: PLRIPWKLFQPR*PRGVFLQSGSA
Trigger: CGCAGACCCTGACTGCAGGAAGACACCTCGTGGCAAGCGGGGCTGGAAGAGCTTCCACGGGATCCTCAAGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS CAA 90 bp TCCAGGAAGGGGCTGGAACTGCTGCCACTGCCTCCGCTGACCCGCTaGATGACCTTGGGGTTAGGATCGGCCAACTCGGACAGAGACCGT +
Preference number: 6 (lower is better)
Translates to: SRKGLELLPLPPLTR*MTLGLGSANSDRDR
Trigger: ACGGTCTCTGTCCGAGTTGGCCGATCCTAACCCCAAGGTCATCAAGCGGGTCAGCGGAGGCAGTGGCAGCAGTTCCAGCCCCTTCCTGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS TCA 72 bp AAGCTCCTTCCTTGGGGCCAGCGTGGCCCCAGCATCTaGCTCTTCCACCTCCCTTCTCTGGGTCCAAGGACC +
Preference number: 6 (lower is better)
Translates to: KLLPWGQRGPSI*LFHLPSLGPRT
Trigger: GGTCCTTGGACCCAGAGAAGGGAGGTGGAAGAGTCAGATGCTGGGGCCACGCTGGCCCCAAGGAAGGAGCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS GCA 72 bp TTGCCTCGGGCCTTCTTTCCCAGATGTGCAGCCCGGTaGTCTCTCAGCTCGCTGGCCATGGCCTTCAGCTTG +
Preference number: 6 (lower is better)
Translates to: LPRAFFPRCAAR*SLSSLAMAFSL
Trigger: CAAGCTGAAGGCCATGGCCAGCGAGCTGAGAGAGCACCGGGCTGCACATCTGGGAAAGAAGGCCCGAGGCAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS CCA 72 bp TGCTGTCACACGTCCCAGATCCCGGCCTCGAGGACCTaGGCCCACCACTCGTCGTATAAGGGATCCTGTGCT +
Preference number: 6 (lower is better)
Translates to: CCHTSQIPASRT*AHHSSYKGSCA
Trigger: AGCACAGGATCCCTTATACGACGAGTGGTGGGCCCAGGTCCTCGAGGCCGGGATCTGGGACGTGTGACAGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224447.2
ENSMUST00000225323.2
ENSMUST00000225781.2
CDS CCA 72 bp TTCCCAGATGTGCAGCCCGGTGCTCTCTCAGCTCGCTaGCCATGGCCTTCAGCTTGGCCTCATGGGTCCTCA +
Preference number: 6 (lower is better)
Translates to: FPDVQPGALSAR*PWPSAWPHGSS
Trigger: TGAGGACCCATGAGGCCAAGCTGAAGGCCATGGCCAGCGAGCTGAGAGAGCACCGGGCTGCACATCTGGGAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS CAA 72 bp CTGCTGCCACTGCCTCCGCTGACCCGCTTGATGACCTaGGGGTTAGGATCGGCCAACTCGGACAGAGACCGT +
Preference number: 6 (lower is better)
Translates to: LLPLPPLTRLMT*GLGSANSDRDR
Trigger: ACGGTCTCTGTCCGAGTTGGCCGATCCTAACCCCAAGGTCATCAAGCGGGTCAGCGGAGGCAGTGGCAGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS CAA 72 bp GCCTTGAGCAGCTCCCTGGGGAAGTCGCCACCATCATaGAGGCCCTCCAGGTTTCCGATGAAGTCCCCACAG +
Preference number: 6 (lower is better)
Translates to: ALSSSLGKSPPS*RPSRFPMKSPQ
Trigger: CTGTGGGGACTTCATCGGAAACCTGGAGGGCCTCAATGATGGTGGCGACTTCCCCAGGGAGCTGCTCAAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS CAA 90 bp CTGTACAAGGCCTTGAGCAGCTCCCTGGGGAAGTCGCCACCATCATaGAGGCCCTCCAGGTTTCCGATGAAGTCCCCACAGGTCATGCGC +
Preference number: 6 (lower is better)
Translates to: LYKALSSSLGKSPPS*RPSRFPMKSPQVMR
Trigger: GCGCATGACCTGTGGGGACTTCATCGGAAACCTGGAGGGCCTCAATGATGGTGGCGACTTCCCCAGGGAGCTGCTCAAGGCCTTGTACAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS TCA 72 bp GTGGCCTCACACTGGCCTTCTCCACAAAACGGAAGATaGCCACAGAACTCTGTGCCCCTGGTGGAGGCTGCC +
Preference number: 6 (lower is better)
Translates to: VASHWPSPQNGR*PQNSVPLVEAA
Trigger: GGCAGCCTCCACCAGGGGCACAGAGTTCTGTGGTCATCTTCCGTTTTGTGGAGAAGGCCAGTGTGAGGCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS TCA 72 bp GTGCTGTCCAGCTCTGAGTCTGAGTCGGATACCAGCTaGCTTAGGGGTGGTTCACTGCCTAGGGGTGCTGCC +
Preference number: 6 (lower is better)
Translates to: VLSSSESESDTS*LRGGSLPRGAA
Trigger: GGCAGCACCCCTAGGCAGTGAACCACCCCTAAGTCAGCTGGTATCCGACTCAGACTCAGAGCTGGACAGCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041391.5
CDS TCA 72 bp CTATGGTGTCCAGCTCCTCGCTGGCTGCCTTCATCTTaGCTCGAAGCAGTGCTGCATAGGTGCCGTAGCGGG +
Preference number: 6 (lower is better)
Translates to: LWCPAPRWLPSS*LEAVLHRCRSG
Trigger: CCCGCTACGGCACCTATGCAGCACTGCTTCGAGTCAAGATGAAGGCAGCCAGCGAGGAGCTGGACACCATAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS TCA 72 bp TGTTCTTGCCCAGATGCCGTGCCACATCGGCCTTCCTaGAGCCATCGAGTCGGTATAGCCTCTTGGCTAGGC +
Preference number: 6 (lower is better)
Translates to: CSCPDAVPHRPS*SHRVGIASWLG
Trigger: GCCTAGCCAAGAGGCTATACCGACTCGATGGCTTCAGGAAGGCCGATGTGGCACGGCATCTGGGCAAGAACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS TCA 72 bp GTGCTGTCCAGCTCTGAGTCTGAGTCGGATACCAGCTaGCTTAGGGGTGGTTCACTGCTGCCTAGGGGTGCT +
Preference number: 6 (lower is better)
Translates to: VLSSSESESDTS*LRGGSLLPRGA
Trigger: AGCACCCCTAGGCAGCAGTGAACCACCCCTAAGTCAGCTGGTATCCGACTCAGACTCAGAGCTGGACAGCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS GCA 72 bp CAGGGCTGCCTCTATGGTGTCCAGCTCCTCGCTGGCTaGCTTCATCTTGACTCGAAGCAGTGCTGCATAGGT +
Preference number: 6 (lower is better)
Translates to: QGCLYGVQLLAG*LHLDSKQCCIG
Trigger: ACCTATGCAGCACTGCTTCGAGTCAAGATGAAGGCAGCCAGCGAGGAGCTGGACACCATAGAGGCAGCCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS CCA 72 bp CGCTGGGAGAAGTGGGCCAGTACACGCTCCCGCTCCTaGGTCTCACCCATTAAGGCCAGCTCCTTTAGAAAT +
Preference number: 6 (lower is better)
Translates to: RWEKWASTRSRS*VSPIKASSFRN
Trigger: ATTTCTAAAGGAGCTGGCCTTAATGGGTGAGACCCAGGAGCGGGAGCGTGTACTGGCCCACTTCTCCCAGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS CCA 72 bp GCTTCAGGATTACACTGGAAATATCGCTGGGAGAAGTaGGCCAGTACACGCTCCCGCTCCTGGGTCTCACCC +
Preference number: 6 (lower is better)
Translates to: ASGLHWKYRWEK*ASTRSRSWVSP
Trigger: GGGTGAGACCCAGGAGCGGGAGCGTGTACTGGCCCACTTCTCCCAGCGATATTTCCAGTGTAATCCTGAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS CCA 72 bp GAGGACAGGGCTTCAGGATTACACTGGAAATATCGCTaGGAGAAGTGGGCCAGTACACGCTCCCGCTCCTGG +
Preference number: 6 (lower is better)
Translates to: EDRASGLHWKYR*EKWASTRSRSW
Trigger: CCAGGAGCGGGAGCGTGTACTGGCCCACTTCTCCCAGCGATATTTCCAGTGTAATCCTGAAGCCCTGTCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS CAA 90 bp CGTGCCACATCGGCCTTCCTGAAGCCATCGAGTCGGTATAGCCTCTaGGCTAGGCGCTGTGCAGCCTCCAAATCTGCTTTCTGTCCATTG +
Preference number: 6 (lower is better)
Translates to: RATSAFLKPSSRYSL*ARRCAASKSAFCPL
Trigger: CAATGGACAGAAAGCAGATTTGGAGGCTGCACAGCGCCTAGCCAAGAGGCTATACCGACTCGATGGCTTCAGGAAGGCCGATGTGGCACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS GCA 72 bp CCAAATCTGCTTTCTGTCCATTGGACAAGGTGTCTGTaGTTCCCAGGGCCAGCCGCTCTGTGCTGTCCAGCT +
Preference number: 6 (lower is better)
Translates to: PNLLSVHWTRCL*FPGPAALCCPA
Trigger: AGCTGGACAGCACAGAGCGGCTGGCCCTGGGAAGCACAGACACCTTGTCCAATGGACAGAAAGCAGATTTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS GCA 72 bp CAGGGCGTGGTGGATGCTGATAGCATTCTTCAGCTCTaGCTCGGAAAGAGCCTTCCCAGGCTGATACTCCTC +
Preference number: 6 (lower is better)
Translates to: QGVVDADSILQL*LGKSLPRLILL
Trigger: GAGGAGTATCAGCCTGGGAAGGCTCTTTCCGAGGCAGAGCTGAAGAATGCTATCAGCATCCACCACGCCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000224556.2
ENSMUST00000225323.2
CDS CCA 72 bp GCACCGTCCTCTGAGGACAGGGCTTCAGGATTACACTaGAAATATCGCTGGGAGAAGTGGGCCAGTACACGC +
Preference number: 6 (lower is better)
Translates to: APSSEDRASGLH*KYRWEKWASTR
Trigger: GCGTGTACTGGCCCACTTCTCCCAGCGATATTTCCAGTGTAATCCTGAAGCCCTGTCCTCAGAGGACGGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS CAA 72 bp TCGGCCTTCCTGAAGCCATCGAGTCGGTATAGCCTCTaGGCTAGGCGCTGTGCAGCCTCCAAATCTGCTTTC +
Preference number: 6 (lower is better)
Translates to: SAFLKPSSRYSL*ARRCAASKSAF
Trigger: GAAAGCAGATTTGGAGGCTGCACAGCGCCTAGCCAAGAGGCTATACCGACTCGATGGCTTCAGGAAGGCCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS CCA 72 bp TGGGGGCGTCCAAGGAGCCATAGAAGAATTCCCACTTaGCTCGAGCGATTCTCTGGGCATGAGAGGAGACTT +
Preference number: 6 (lower is better)
Translates to: WGRPRSHRRIPT*LERFSGHERRL
Trigger: AAGTCTCCTCTCATGCCCAGAGAATCGCTCGAGCCAAGTGGGAATTCTTCTATGGCTCCTTGGACGCCCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS GCA 72 bp CTCGAACACCTCATCATCCACATCCTCTTCACCTCCTaGCTCATCATCTTCGTTGCCACTGCCCAGACTGGA +
Preference number: 6 (lower is better)
Translates to: LEHLIIHILFTS*LIIFVATAQTG
Trigger: TCCAGTCTGGGCAGTGGCAACGAAGATGATGAGGCAGGAGGTGAAGAGGATGTGGATGATGAGGTGTTCGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS GCA 72 bp GCCACCAATTTGCTGAAGTCATTGTTCTTGCCCAGATaGCGTGCCACATCGGCCTTCCTGAAGCCATCGAGT +
Preference number: 6 (lower is better)
Translates to: ATNLLKSLFLPR*RATSAFLKPSS
Trigger: ACTCGATGGCTTCAGGAAGGCCGATGTGGCACGGCATCTGGGCAAGAACAATGACTTCAGCAAATTGGTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS TCA 72 bp GGCAAGGCTACTATAGGAGGTGCCCTTGGCCCGGTGTaGCTCCAAGATAGCTTCAAACACACAACTGAAGGA +
Preference number: 6 (lower is better)
Translates to: GKATIGGALGPV*LQDSFKHTTEG
Trigger: TCCTTCAGTTGTGTGTTTGAAGCTATCTTGGAGTCACACCGGGCCAAGGGCACCTCCTATAGTAGCCTTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS GCA 72 bp CAATTTGCTGAAGTCATTGTTCTTGCCCAGATGCCGTaGCACATCGGCCTTCCTGAAGCCATCGAGTCGGTA +
Preference number: 6 (lower is better)
Translates to: QFAEVIVLAQMP*HIGLPEAIESV
Trigger: TACCGACTCGATGGCTTCAGGAAGGCCGATGTGGCACGGCATCTGGGCAAGAACAATGACTTCAGCAAATTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS CAA 72 bp TCCTCCTCGTCTATGGCCCATTGCAATTTTTCATTCTaGATGGAGCTGTACAAGGCCTTGAGCAGCTCCCTG +
Preference number: 6 (lower is better)
Translates to: SSSSMAHCNFSF*MELYKALSSSL
Trigger: CAGGGAGCTGCTCAAGGCCTTGTACAGCTCCATCAAGAATGAAAAATTGCAATGGGCCATAGACGAGGAGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041391.5
ENSMUST00000096029.12
ENSMUST00000225323.2
CDS CAA 72 bp TCCTCCTCGTCTATGGCCCATTGCAATTTTTCATTCTaGATGGAGCTGTACAAGGCCGCCTTTTTCTTCTTG +
Preference number: 6 (lower is better)
Translates to: SSSSMAHCNFSF*MELYKAAFFFL
Trigger: CAAGAAGAAAAAGGCGGCCTTGTACAGCTCCATCAAGAATGAAAAATTGCAATGGGCCATAGACGAGGAGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000224556.2