RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PSCA (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022598

Ensembl transcript IDs: ENSMUST00000023265.5

Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TCAGTCCATCCCATCTCAGCCTCTACCAGGCCCCTCCCCAAGTGCTaGTGTGCACACTGGCTCAGGCCCTGGAGAGTAGGGTGGCGAGGG +
Preference number: 1 (lower is better)
Translates to: SVHPISASTRPLPKC*CAHWLRPWRVGWRG
Trigger: CCCTCGCCACCCTACTCTCCAGGGCCTGAGCCAGTGTGCACAGCAGCACTTGGGGAGGGGCCTGGTAGAGGCTGAGATGGGATGGACTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023265.5
3UTR GCA 90 bp TGCTCAGTCCATCCCATCTCAGCCTCTACCAGGCCCCTCCCCAAGTaGTGCTGTGCACACTGGCTCAGGCCCTGGAGAGTAGGGTGGCGA +
Preference number: 1 (lower is better)
Translates to: CSVHPISASTRPLPK*CCAHWLRPWRVGWR
Trigger: TCGCCACCCTACTCTCCAGGGCCTGAGCCAGTGTGCACAGCAGCACTTGGGGAGGGGCCTGGTAGAGGCTGAGATGGGATGGACTGAGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023265.5
3UTR CCA 90 bp ACCAGGCCCCTCCCCAAGTGCTGCTGTGCACACTGGCTCAGGCCCTaGAGAGTAGGGTGGCGAGGGAGTCCTTCAGCTGAAGCATCTGAG +
Preference number: 1 (lower is better)
Translates to: TRPLPKCCCAHWLRP*RVGWRGSPSAEASE
Trigger: CTCAGATGCTTCAGCTGAAGGACTCCCTCGCCACCCTACTCTCCAGGGCCTGAGCCAGTGTGCACAGCAGCACTTGGGGAGGGGCCTGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023265.5
3UTR GCA 90 bp CGGAGAGCATGTCCCCCACCAGGCATCATCTCCTGGGACTCCTGGTaGCTCACACCCACCTCCCAGCTCCATTTCTGCTCAGTCCATCCC +
Preference number: 1 (lower is better)
Translates to: RRACPPPGIISWDSW*LTPTSQLHFCSVHP
Trigger: GGGATGGACTGAGCAGAAATGGAGCTGGGAGGTGGGTGTGAGGCACCAGGAGTCCCAGGAGATGATGCCTGGTGGGGGACATGCTCTCCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023265.5
3UTR CCA 90 bp GAGCTCTATAAACGGAGAGCATGTCCCCCACCAGGCATCATCTCCTaGGACTCCTGGTGCCTCACACCCACCTCCCAGCTCCATTTCTGC +
Preference number: 1 (lower is better)
Translates to: ELYKRRACPPPGIIS*DSWCLTPTSQLHFC
Trigger: GCAGAAATGGAGCTGGGAGGTGGGTGTGAGGCACCAGGAGTCCCAGGAGATGATGCCTGGTGGGGGACATGCTCTCCGTTTATAGAGCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023265.5
3UTR-3UTR CCA 90 bp GGGCCAAGCGCTAGCTGTGGAAATAGCAGCAGAGAGGAGAAAGGGCCCTGGTGGGAGGCCAGCCCTATGTaGGAGTTAAGAGTGGTGGTG +
Preference number: 2 (lower is better)
Translates to: GPSASCGNSSREEKGPWWEASPM*ELRVVV
Trigger: CACCACCACTCTTAACTCCCACATAGGGCTGGCCTC...CCACCAGGGCCCTTTCTCCTCTCTGCTGCTATTTCCACAGCTAGCGCTTGGCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023265.5
3UTR-3UTR GCA 90 bp CTCTATAAACGGAGAGCATGTCCCCCACCAGGCATCATCTCCTGGGACTCCTGGGGGTGGGGGTGGAGGTaGAGCTCATCCCTTCACAAT +
Preference number: 2 (lower is better)
Translates to: LYKRRACPPPGIISWDSWGWGWR*SSSLHN
Trigger: ATTGTGAAGGGATGAGCTGCACCTCCACCCCCACCC...CCAGGAGTCCCAGGAGATGATGCCTGGTGGGGGACATGCTCTCCGTTTATAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000023265.5
3UTR GCA 72 bp CCCATCTCAGCCTCTACCAGGCCCCTCCCCAAGTGCTaGTGTGCACACTGGCTCAGGCCCTGGAGAGTAGGG +
Preference number: 3 (lower is better)
Translates to: PISASTRPLPKC*CAHWLRPWRVG
Trigger: CCCTACTCTCCAGGGCCTGAGCCAGTGTGCACAGCAGCACTTGGGGAGGGGCCTGGTAGAGGCTGAGATGGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023265.5
3UTR CCA 72 bp TGCTGTGCACACTGGCTCAGGCCCTGGAGAGTAGGGTaGCGAGGGAGTCCTTCAGCTGAAGCATCTGAGCAG +
Preference number: 3 (lower is better)
Translates to: CCAHWLRPWRVG*RGSPSAEASEQ
Trigger: CTGCTCAGATGCTTCAGCTGAAGGACTCCCTCGCCACCCTACTCTCCAGGGCCTGAGCCAGTGTGCACAGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023265.5
CDS-3UTR GCA 90 bp TGCTGCTGTGCACACTGGCTCAGGCCCTGGAGAGTAGGGTGGCGAGGGAGTCCTCCCACAGCAACAGGCTaGAGAGCACGGTCAGCAGCC +
Preference number: 4 (lower is better)
Translates to: CCCAHWLRPWRVGWRGSPPTATG*RARSAA
Trigger: GGCTGCTGACCGTGCTCTGCAGCCTGTTGCTGTGGG...AGGACTCCCTCGCCACCCTACTCTCCAGGGCCTGAGCCAGTGTGCACAGCAGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023265.5
CDS-3UTR CCA 90 bp GGGCCAAGCGCTAGCTGTGGAAATAGCAGCAGAGAGGAGAAAGGGCCCTGGTGGGCAGCCCCAGGGTGGTaGGTGGCTTCAGGGTGTGGG +
Preference number: 4 (lower is better)
Translates to: GPSASCGNSSREEKGPWWAAPGW*VASGCG
Trigger: CCCACACCCTGAAGCCACCCACCACCCTGGGGCTGC...CCACCAGGGCCCTTTCTCCTCTCTGCTGCTATTTCCACAGCTAGCGCTTGGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023265.5
3UTR CAA 72 bp CGAGGGAGTCCTTCAGCTGAAGCATCTGAGCAGAACTaGGTAGGGCACAGTGCTGATGGGGTGGGGTGGGCC +
Preference number: 4 (lower is better)
Translates to: RGSPSAEASEQN*VGHSADGVGWA
Trigger: GGCCCACCCCACCCCATCAGCACTGTGCCCTACCAAGTTCTGCTCAGATGCTTCAGCTGAAGGACTCCCTCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023265.5
CDS-3UTR CCA 90 bp CTCTATAAACGGAGAGCATGTCCCCCACCAGGCATCATCTCCTGGGACTCCTGGTCAGCAGCCCCAGGGTaGTGGGTGGCTTCAGGGTGT +
Preference number: 4 (lower is better)
Translates to: LYKRRACPPPGIISWDSWSAAPG*WVASGC
Trigger: ACACCCTGAAGCCACCCACCACCCTGGGGCTGCTGA...CCAGGAGTCCCAGGAGATGATGCCTGGTGGGGGACATGCTCTCCGTTTATAGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023265.5
CDS-3UTR GCA 90 bp CTGCTGTGCACACTGGCTCAGGCCCTGGAGAGTAGGGTGGCGAGGGAGTCCTTCGATGTAAAGCAACTGTaGTGGTCCAGGCTGCAGTTC +
Preference number: 4 (lower is better)
Translates to: LLCTLAQALESRVARESFDVKQL*WSRLQF
Trigger: GAACTGCAGCCTGGACCAGCACAGTTGCTTTACATC...GAAGGACTCCCTCGCCACCCTACTCTCCAGGGCCTGAGCCAGTGTGCACAGCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023265.5
CDS-3UTR TCA 90 bp CGAGGGAGTCCTTCAGCTGAAGCATCTGAGCAGAACTTGGTAGGGCACAGTGCTGGGTGTGGGCCCCGTTaGCATTGCACAGGTCAGAGT +
Preference number: 4 (lower is better)
Translates to: RGSPSAEASEQNLVGHSAGCGPR*HCTGQS
Trigger: ACTCTGACCTGTGCAATGTCAACGGGGCCCACACCC...AGCACTGTGCCCTACCAAGTTCTGCTCAGATGCTTCAGCTGAAGGACTCCCTCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023265.5
CDS-3UTR TCA 90 bp GTGGGGGTGGGGGTGGAGGTGCAGCTCATCCCTTCACAATCGGGCTATGGTAGGCAGAGTAGCAGCACGTaGTGTTCTTCTTGCCCAAAT +
Preference number: 4 (lower is better)
Translates to: VGVGVEVQLIPSQSGYGRQSSST*CSSCPN
Trigger: ATTTGGGCAAGAAGAACATCACGTGCTGCTACTCTG...CCTACCATAGCCCGATTGTGAAGGGATGAGCTGCACCTCCACCCCCACCCCCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000023265.5
CDS-3UTR TCA 90 bp TCAGCTGAAGCATCTGAGCAGAACTTGGTAGGGCACAGTGCTGATGGGGTGGGGCATCTGTGCTGTGCATaGATAGCACTGCAGAGCAGC +
Preference number: 4 (lower is better)
Translates to: SAEASEQNLVGHSADGVGHLCCA*IALQSS
Trigger: GCTGCTCTGCAGTGCTATTCATGCACAGCACAGATG...CCCCACCCCATCAGCACTGTGCCCTACCAAGTTCTGCTCAGATGCTTCAGCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023265.5
CDS-3UTR CCA 90 bp TCAGCTGAAGCATCTGAGCAGAACTTGGTAGGGCACAGTGCTGATGGGGTGGGGGCAGGGCTAAGTAGGTaGCCAGCAGGAGAAAGAAGA +
Preference number: 4 (lower is better)
Translates to: SAEASEQNLVGHSADGVGAGLSR*PAGERR
Trigger: TCTTCTTTCTCCTGCTGGCCACCTACTTAGCCCTGC...CCCCACCCCATCAGCACTGTGCCCTACCAAGTTCTGCTCAGATGCTTCAGCTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023265.5
CDS-3UTR CCA 90 bp GTGGAGGTGCAGCTCATCCCTTCACAATCGGGCTATGGTAGGGCTCTCCCAGAGGTAAAGCAACTGTGCTaGTCCAGGCTGCAGTTCTGT +
Preference number: 4 (lower is better)
Translates to: VEVQLIPSQSGYGRALPEVKQLC*SRLQFC
Trigger: ACAGAACTGCAGCCTGGACCAGCACAGTTGCTTTAC...CTCTGGGAGAGCCCTACCATAGCCCGATTGTGAAGGGATGAGCTGCACCTCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023265.5
CDS-3UTR GCA 90 bp CGAGGGAGTCCTTCAGCTGAAGCATCTGAGCAGAACTTGGTAGGGCACAGTGCTTGTGCTGGTCCAGGCTaGAGTTCTGTACATTCAGAC +
Preference number: 4 (lower is better)
Translates to: RGSPSAEASEQNLVGHSACAGPG*SSVHSD
Trigger: GTCTGAATGTACAGAACTGCAGCCTGGACCAGCACA...AGCACTGTGCCCTACCAAGTTCTGCTCAGATGCTTCAGCTGAAGGACTCCCTCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023265.5
CDS-3UTR GCA 90 bp CGAGGGAGTCCTTCAGCTGAAGCATCTGAGCAGAACTTGGTAGGGCACAGTGCTTGTTCATCTGTGCTGTaGATGAATAGCACTGCAGAG +
Preference number: 4 (lower is better)
Translates to: RGSPSAEASEQNLVGHSACSSVL*MNSTAE
Trigger: CTCTGCAGTGCTATTCATGCACAGCACAGATGAACA...AGCACTGTGCCCTACCAAGTTCTGCTCAGATGCTTCAGCTGAAGGACTCCCTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023265.5
CDS CCA 90 bp CAGCAACAGGCTGCAGAGCACGGTCAGCAGCCCCAGGGTGGTGGGTaGCTTCAGGGTGTGGGCCCCGTTGACATTGCACAGGTCAGAGTA +
Preference number: 5 (lower is better)
Translates to: QQQAAEHGQQPQGGG*LQGVGPVDIAQVRV
Trigger: TACTCTGACCTGTGCAATGTCAACGGGGCCCACACCCTGAAGCCACCCACCACCCTGGGGCTGCTGACCGTGCTCTGCAGCCTGTTGCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023265.5
CDS GCA 90 bp ACTGTCACGAGTCCAATGGCCCGGATGCGCGATGTAAAGCAACTGTaGTGGTCCAGGCTGCAGTTCTGTACATTCAGACAGTCTCTGTTG +
Preference number: 5 (lower is better)
Translates to: TVTSPMARMRDVKQL*WSRLQFCTFRQSLL
Trigger: CAACAGAGACTGTCTGAATGTACAGAACTGCAGCCTGGACCAGCACAGTTGCTTTACATCGCGCATCCGGGCCATTGGACTCGTGACAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023265.5
CDS CCA 90 bp GTCACGAGTCCAATGGCCCGGATGCGCGATGTAAAGCAACTGTGCTaGTCCAGGCTGCAGTTCTGTACATTCAGACAGTCTCTGTTGTTC +
Preference number: 5 (lower is better)
Translates to: VTSPMARMRDVKQLC*SRLQFCTFRQSLLF
Trigger: GAACAACAGAGACTGTCTGAATGTACAGAACTGCAGCCTGGACCAGCACAGTTGCTTTACATCGCGCATCCGGGCCATTGGACTCGTGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023265.5
CDS-3UTR CAA 90 bp CTCTATAAACGGAGAGCATGTCCCCCACCAGGCATCATCTCCTGGGACTCCTGGTTCAGACAGTCTCTGTaGTTCATCTGTGCTGTGCAT +
Preference number: 5 (lower is better)
Translates to: LYKRRACPPPGIISWDSWFRQSL*FICAVH
Trigger: ATGCACAGCACAGATGAACAACAGAGACTGTCTGAA...CCAGGAGTCCCAGGAGATGATGCCTGGTGGGGGACATGCTCTCCGTTTATAGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023265.5
CDS TCA 90 bp GTTCTTCTTGCCCAAATAGTAGTTCTCCGAGTCATCCTCACACTGTaGGCTGCAGCCCTTACTGATAACTGTCACGAGTCCAATGGCCCG +
Preference number: 5 (lower is better)
Translates to: VLLAQIVVLRVILTL*AAALTDNCHESNGP
Trigger: CGGGCCATTGGACTCGTGACAGTTATCAGTAAGGGCTGCAGCTCACAGTGTGAGGATGACTCGGAGAACTACTATTTGGGCAAGAAGAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023265.5
CDS CCA 72 bp GCTGCAGAGCACGGTCAGCAGCCCCAGGGTGGTGGGTaGCTTCAGGGTGTGGGCCCCGTTGACATTGCACAG +
Preference number: 6 (lower is better)
Translates to: AAEHGQQPQGGG*LQGVGPVDIAQ
Trigger: CTGTGCAATGTCAACGGGGCCCACACCCTGAAGCCACCCACCACCCTGGGGCTGCTGACCGTGCTCTGCAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023265.5
CDS GCA 72 bp AGTCCAATGGCCCGGATGCGCGATGTAAAGCAACTGTaGTGGTCCAGGCTGCAGTTCTGTACATTCAGACAG +
Preference number: 6 (lower is better)
Translates to: SPMARMRDVKQL*WSRLQFCTFRQ
Trigger: CTGTCTGAATGTACAGAACTGCAGCCTGGACCAGCACAGTTGCTTTACATCGCGCATCCGGGCCATTGGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023265.5
CDS CCA 72 bp CCAATGGCCCGGATGCGCGATGTAAAGCAACTGTGCTaGTCCAGGCTGCAGTTCTGTACATTCAGACAGTCT +
Preference number: 6 (lower is better)
Translates to: PMARMRDVKQLC*SRLQFCTFRQS
Trigger: AGACTGTCTGAATGTACAGAACTGCAGCCTGGACCAGCACAGTTGCTTTACATCGCGCATCCGGGCCATTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023265.5
CDS GCA 72 bp GTACATTCAGACAGTCTCTGTTGTTCATCTGTGCTGTaGATGAATAGCACTGCAGAGCAGCACCTGGATGCA +
Preference number: 6 (lower is better)
Translates to: VHSDSLCCSSVL*MNSTAEQHLDA
Trigger: TGCATCCAGGTGCTGCTCTGCAGTGCTATTCATGCACAGCACAGATGAACAACAGAGACTGTCTGAATGTAC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023265.5