Pregenerated sensors for PRXL2B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029059Ensembl transcript IDs: ENSMUST00000030935.10, ENSMUST00000132281.2
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | CTGTTGAAAGATGAACAAGGTCCAACGTCCTGGCTCAGTGGCTCCACAGGGATTTGCTCCGGAGGTTGCTaGGGTCCTGGGCGATCCAGC | + |
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Preference number: 4 (lower is better) Translates to: LLKDEQGPTSWLSGSTGICSGGC*GPGRSS Trigger: GCTGGATCGCCCAGGACCTCAGCAACCTCCGGAGCA...AATCCCTGTGGAGCCACTGAGCCAGGACGTTGGACCTTGTTCATCTTTCAACAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS-3UTR TCA 90 bp | GATGAACAAGGTCCAACGTCCTGGCTCAGTGGCTCCACAGGGATTCTTTGTGTTTGTCGCCACCCTTGCTaGCCACCAGCAGCCCTCCAC | + |
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Preference number: 4 (lower is better) Translates to: DEQGPTSWLSGSTGILCVCRHPC*PPAALH Trigger: GTGGAGGGCTGCTGGTGGTCAGCAAGGGTGGCGACA...AACACAAAGAATCCCTGTGGAGCCACTGAGCCAGGACGTTGGACCTTGTTCATC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS-3UTR GCA 90 bp | CTGTTGAAAGATGAACAAGGTCCAACGTCCTGGCTCAGTGGCTCCACAGGGATTTCCAGCGGCACACCATaGAGCCGAAGCGTCGCAGAC | + |
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Preference number: 4 (lower is better) Translates to: LLKDEQGPTSWLSGSTGISSGTP*SRSVAD Trigger: GTCTGCGACGCTTCGGCTGCATGGTGTGCCGCTGGA...AATCCCTGTGGAGCCACTGAGCCAGGACGTTGGACCTTGTTCATCTTTCAACAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS-3UTR CCA 90 bp | ATGAACAAGGTCCAACGTCCTGGCTCAGTGGCTCCACAGGGATTCTTTGTGTTCAGGTTGCTGAGGTCCTaGGCGATCCAGCGGCACACC | + |
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Preference number: 4 (lower is better) Translates to: MNKVQRPGSVAPQGFFVFRLLRS*AIQRHT Trigger: GGTGTGCCGCTGGATCGCCCAGGACCTCAGCAACCT...GAACACAAAGAATCCCTGTGGAGCCACTGAGCCAGGACGTTGGACCTTGTTCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS-3UTR GCA 90 bp | TCCACAGGGATTCTTTGTGTTCCAAACACATCCAAGGTTACAGATGCCTCCGGGCCATCCAGAAACTCCTaGAGGCCCAGGGCCTCAGGC | + |
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Preference number: 4 (lower is better) Translates to: STGILCVPNTSKVTDASGPSRNS*RPRASG Trigger: GCCTGAGGCCCTGGGCCTGCAGGAGTTTCTGGATGG...CCCGGAGGCATCTGTAACCTTGGATGTGTTTGGAACACAAAGAATCCCTGTGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS-3UTR GCA 90 bp | AAGATGAACAAGGTCCAACGTCCTGGCTCAGTGGCTCCACAGGGATTCTTTGTGAGCAGCCCTCCACTTTaGAGCAGGTCACCAGACAGG | + |
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Preference number: 4 (lower is better) Translates to: KMNKVQRPGSVAPQGFFVSSPPL*SRSPDR Trigger: CCTGTCTGGTGACCTGCTGCAAAGTGGAGGGCTGCT...CACAAAGAATCCCTGTGGAGCCACTGAGCCAGGACGTTGGACCTTGTTCATCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS-3UTR GCA 90 bp | ATGAACAAGGTCCAACGTCCTGGCTCAGTGGCTCCACAGGGATTCTTTGTGTTCGGGCAGCTGGTAGGATaGTTAAGCTGTTGTACCGCT | + |
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Preference number: 4 (lower is better) Translates to: MNKVQRPGSVAPQGFFVFGQLVG*LSCCTA Trigger: AGCGGTACAACAGCTTAAGCATCCTACCAGCTGCCC...GAACACAAAGAATCCCTGTGGAGCCACTGAGCCAGGACGTTGGACCTTGTTCAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS-3UTR GCA 90 bp | AAAGATGAACAAGGTCCAACGTCCTGGCTCAGTGGCTCCACAGGGATTCTTTGTGCTGGAGCAAACCTCTaGAGAGATACCCAAGGCCTG | + |
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Preference number: 4 (lower is better) Translates to: KDEQGPTSWLSGSTGILCAGANL*RDTQGL Trigger: CAGGCCTTGGGTATCTCTGCAGAGGTTTGCTCCAGC...ACAAAGAATCCCTGTGGAGCCACTGAGCCAGGACGTTGGACCTTGTTCATCTTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS-3UTR GCA 90 bp | AGTGGCTCCACAGGGATTCTTTGTGTTCCAAACACATCCAAGGTTACAGATGCCCACACTGGGGTGGCTTaGTGGAGCAAACCTCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: SGSTGILCVPNTSKVTDAHTGVA*WSKPLQ Trigger: CTGCAGAGGTTTGCTCCAGCAAGCCACCCCAGTGTG...GGCATCTGTAACCTTGGATGTGTTTGGAACACAAAGAATCCCTGTGGAGCCACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS-3UTR CCA 90 bp | AAGATGAACAAGGTCCAACGTCCTGGCTCAGTGGCTCCACAGGGATTCTTTGTGACCTCTTCATCACACTaGGGTGGCTTGCTGGAGCAA | + |
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Preference number: 4 (lower is better) Translates to: KMNKVQRPGSVAPQGFFVTSSSH*GGLLEQ Trigger: TTGCTCCAGCAAGCCACCCCAGTGTGATGAAGAGGT...CACAAAGAATCCCTGTGGAGCCACTGAGCCAGGACGTTGGACCTTGTTCATCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS-3UTR CCA 90 bp | AGTGGCTCCACAGGGATTCTTTGTGTTCCAAACACATCCAAGGTTACAGATGCCACTGGGGTGGCTTGCTaGAGCAAACCTCTGCAGAGA | + |
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Preference number: 4 (lower is better) Translates to: SGSTGILCVPNTSKVTDATGVAC*SKPLQR Trigger: TCTCTGCAGAGGTTTGCTCCAGCAAGCCACCCCAGT...GGCATCTGTAACCTTGGATGTGTTTGGAACACAAAGAATCCCTGTGGAGCCACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS-3UTR CCA 90 bp | TCCTGGCTCAGTGGCTCCACAGGGATTCTTTGTGTTCCAAACACATCCAAGGTTTTCATCACACTGGGGTaGCTTGCTGGAGCAAACCTC | + |
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Preference number: 4 (lower is better) Translates to: SWLSGSTGILCVPNTSKVFITLG*LAGANL Trigger: GAGGTTTGCTCCAGCAAGCCACCCCAGTGTGATGAA...AACCTTGGATGTGTTTGGAACACAAAGAATCCCTGTGGAGCCACTGAGCCAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| 3UTR CAA 72 bp | TCCAACGTCCTGGCTCAGTGGCTCCACAGGGATTCTTaGTGTTCCAAACACATCCAAGGTTACAGATGCCTC | + |
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Preference number: 4 (lower is better) Translates to: SNVLAQWLHRDS*CSKHIQGYRCL Trigger: GAGGCATCTGTAACCTTGGATGTGTTTGGAACACAAAGAATCCCTGTGGAGCCACTGAGCCAGGACGTTGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| 3UTR CAA 72 bp | ACGCTCACTGCCCAGGACCTGCACTTTAATGGCTCATaGCTGTTGAAAGATGAACAAGGTCCAACGTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: TLTAQDLHFNGS*LLKDEQGPTSW Trigger: CCAGGACGTTGGACCTTGTTCATCTTTCAACAGCAATGAGCCATTAAAGTGCAGGTCCTGGGCAGTGAGCGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS-3UTR TCA 90 bp | TGGCTCCACAGGGATTCTTTGTGTTCCAAACACATCCAAGGTTACAGATGCCTCAAGGTAGAGTTCTCCTaGGAAGTAACCACCATCCAG | + |
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Preference number: 4 (lower is better) Translates to: WLHRDSLCSKHIQGYRCLKVEFS*EVTTIQ Trigger: CTGGATGGTGGTTACTTCTCAGGAGAACTCTACCTT...GAGGCATCTGTAACCTTGGATGTGTTTGGAACACAAAGAATCCCTGTGGAGCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS CCA 90 bp | AGGCCCAGGGCCTCAGGCCCCACGCCCACCAGGCGCACATCGTGTTaGTCCAGGATGCTCCGGAGGTTGCTGAGGTCCTGGGCGATCCAG | + |
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Preference number: 5 (lower is better) Translates to: RPRASGPTPTRRTSC*SRMLRRLLRSWAIQ Trigger: CTGGATCGCCCAGGACCTCAGCAACCTCCGGAGCATCCTGGACCAACACGATGTGCGCCTGGTGGGCGTGGGGCCTGAGGCCCTGGGCCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030935.10 ENSMUST00000132281.2 |
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| CDS TCA 90 bp | CCACCAGGCGCACATCGTGTTGGTCCAGGATGCTCCGGAGGTTGCTaGGGTCCTGGGCGATCCAGCGGCACACCATGCAGCCGAAGCGTC | + |
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Preference number: 5 (lower is better) Translates to: PPGAHRVGPGCSGGC*GPGRSSGTPCSRSV Trigger: GACGCTTCGGCTGCATGGTGTGCCGCTGGATCGCCCAGGACCTCAGCAACCTCCGGAGCATCCTGGACCAACACGATGTGCGCCTGGTGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS CCA 90 bp | CGCACATCGTGTTGGTCCAGGATGCTCCGGAGGTTGCTGAGGTCCTaGGCGATCCAGCGGCACACCATGCAGCCGAAGCGTCGCAGACCG | + |
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Preference number: 5 (lower is better) Translates to: RTSCWSRMLRRLLRS*AIQRHTMQPKRRRP Trigger: CGGTCTGCGACGCTTCGGCTGCATGGTGTGCCGCTGGATCGCCCAGGACCTCAGCAACCTCCGGAGCATCCTGGACCAACACGATGTGCG 66% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS GCA 90 bp | ATGCAGCCGAAGCGTCGCAGACCGGCCACCACACAAGCTTTCTCCTaGCATAGGCTCCGCAGCTCCACAGCCTCCCCAGTCACTGCATGT | + |
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Preference number: 5 (lower is better) Translates to: MQPKRRRPATTQAFS*HRLRSSTASPVTAC Trigger: ACATGCAGTGACTGGGGAGGCTGTGGAGCTGCGGAGCCTATGGCAGGAGAAAGCTTGTGTGGTGGCCGGTCTGCGACGCTTCGGCTGCAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS GCA 90 bp | AGTACCTTGTCGCCACCCTTGCTGACCACCAGCAGCCCTCCACTTTaGAGCAGGTCACCAGACAGGTTCCCCTGGATACCAACAGCTTTA | + |
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Preference number: 5 (lower is better) Translates to: STLSPPLLTTSSPPL*SRSPDRFPWIPTAL Trigger: TAAAGCTGTTGGTATCCAGGGGAACCTGTCTGGTGACCTGCTGCAAAGTGGAGGGCTGCTGGTGGTCAGCAAGGGTGGCGACAAGGTACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS-3UTR CAA 90 bp | GAACAAGGTCCAACGTCCTGGCTCAGTGGCTCCACAGGGATTCTTTGTGTTCCACAGCAGCCCTCCACTTaGCAGCAGGTCACCAGACAG | + |
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Preference number: 5 (lower is better) Translates to: EQGPTSWLSGSTGILCVPQQPST*QQVTRQ Trigger: CTGTCTGGTGACCTGCTGCAAAGTGGAGGGCTGCTG...TGGAACACAAAGAATCCCTGTGGAGCCACTGAGCCAGGACGTTGGACCTTGTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS-3UTR CAA 90 bp | AAGGTCCAACGTCCTGGCTCAGTGGCTCCACAGGGATTCTTTGTGTTCCAAACAACCTTGTCGCCACCCTaGCTGACCACCAGCAGCCCT | + |
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Preference number: 5 (lower is better) Translates to: KVQRPGSVAPQGFFVFQTTLSPP*LTTSSP Trigger: AGGGCTGCTGGTGGTCAGCAAGGGTGGCGACAAGGT...TGTTTGGAACACAAAGAATCCCTGTGGAGCCACTGAGCCAGGACGTTGGACCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS CCA 90 bp | ACCAGCAGCCCTCCACTTTGCAGCAGGTCACCAGACAGGTTCCCCTaGATACCAACAGCTTTAGCCTTGGAGGCTACATCACGAACAGGT | + |
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Preference number: 5 (lower is better) Translates to: TSSPPLCSRSPDRFP*IPTALALEATSRTG Trigger: ACCTGTTCGTGATGTAGCCTCCAAGGCTAAAGCTGTTGGTATCCAGGGGAACCTGTCTGGTGACCTGCTGCAAAGTGGAGGGCTGCTGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030935.10 ENSMUST00000132281.2 |
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| CDS-3UTR CAA 90 bp | GGCTCCACAGGGATTCTTTGTGTTCCAAACACATCCAAGGTTACAGATGCCTCCAGGATGCTCCGGAGGTaGCTGAGGTCCTGGGCGATC | + |
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Preference number: 5 (lower is better) Translates to: GSTGILCVPNTSKVTDASRMLRR*LRSWAI Trigger: GATCGCCCAGGACCTCAGCAACCTCCGGAGCATCCT...GGAGGCATCTGTAACCTTGGATGTGTTTGGAACACAAAGAATCCCTGTGGAGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS GCA 90 bp | ACACACCTCTTCATCACACTGGGGTGGCTTGCTGGAGCAAACCTCTaGAGAGATACCCAAGGCCTGCAGGATGTTCTCCTGGGGAACATA | + |
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Preference number: 5 (lower is better) Translates to: THLFITLGWLAGANL*RDTQGLQDVLLGNI Trigger: TATGTTCCCCAGGAGAACATCCTGCAGGCCTTGGGTATCTCTGCAGAGGTTTGCTCCAGCAAGCCACCCCAGTGTGATGAAGAGGTGTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS-3UTR CAA 90 bp | CAAGGTCCAACGTCCTGGCTCAGTGGCTCCACAGGGATTCTTTGTGTTCCAAACAAGTGCAACAGTACCTaGTCGCCACCCTTGCTGACC | + |
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Preference number: 5 (lower is better) Translates to: QGPTSWLSGSTGILCVPNKCNST*SPPLLT Trigger: GGTCAGCAAGGGTGGCGACAAGGTACTGTTGCACTT...GTTTGGAACACAAAGAATCCCTGTGGAGCCACTGAGCCAGGACGTTGGACCTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS-3UTR CAA 90 bp | AAGATGAACAAGGTCCAACGTCCTGGCTCAGTGGCTCCACAGGGATTCTTTGTGTCACACTGGGGTGGCTaGCTGGAGCAAACCTCTGCA | + |
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Preference number: 5 (lower is better) Translates to: KMNKVQRPGSVAPQGFFVSHWGG*LEQTSA Trigger: TGCAGAGGTTTGCTCCAGCAAGCCACCCCAGTGTGA...CACAAAGAATCCCTGTGGAGCCACTGAGCCAGGACGTTGGACCTTGTTCATCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS-3UTR CAA 90 bp | GGCTCCACAGGGATTCTTTGTGTTCCAAACACATCCAAGGTTACAGATGCCTCCCAGCTCCTTATAGATTaGCTTGCTCTCATCAAGGTA | + |
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Preference number: 5 (lower is better) Translates to: GSTGILCVPNTSKVTDASQLLID*LALIKV Trigger: TACCTTGATGAGAGCAAGCAAATCTATAAGGAGCTG...GGAGGCATCTGTAACCTTGGATGTGTTTGGAACACAAAGAATCCCTGTGGAGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS CAA 90 bp | CAGGCCCAGGGCCTCAGGCCCCACGCCCACCAGGCGCACATCGTGTaGGTCCAGGATGCTCCGGAGGTTGCTGAGGTCCTGGGCGATCCA | + |
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Preference number: 6 (lower is better) Translates to: QAQGLRPHAHQAHIV*VQDAPEVAEVLGDP Trigger: TGGATCGCCCAGGACCTCAGCAACCTCCGGAGCATCCTGGACCAACACGATGTGCGCCTGGTGGGCGTGGGGCCTGAGGCCCTGGGCCTG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030935.10 ENSMUST00000132281.2 |
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| CDS CCA 72 bp | GCCTCAGGCCCCACGCCCACCAGGCGCACATCGTGTTaGTCCAGGATGCTCCGGAGGTTGCTGAGGTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: ASGPTPTRRTSC*SRMLRRLLRSW Trigger: CCAGGACCTCAGCAACCTCCGGAGCATCCTGGACCAACACGATGTGCGCCTGGTGGGCGTGGGGCCTGAGGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030935.10 ENSMUST00000132281.2 |
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| CDS CAA 72 bp | GGCCTCAGGCCCCACGCCCACCAGGCGCACATCGTGTaGGTCCAGGATGCTCCGGAGGTTGCTGAGGTCCTG | + |
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Preference number: 6 (lower is better) Translates to: GLRPHAHQAHIV*VQDAPEVAEVL Trigger: CAGGACCTCAGCAACCTCCGGAGCATCCTGGACCAACACGATGTGCGCCTGGTGGGCGTGGGGCCTGAGGCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030935.10 ENSMUST00000132281.2 |
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| CDS CAA 90 bp | ACGCCCACCAGGCGCACATCGTGTTGGTCCAGGATGCTCCGGAGGTaGCTGAGGTCCTGGGCGATCCAGCGGCACACCATGCAGCCGAAG | + |
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Preference number: 6 (lower is better) Translates to: TPTRRTSCWSRMLRR*LRSWAIQRHTMQPK Trigger: CTTCGGCTGCATGGTGTGCCGCTGGATCGCCCAGGACCTCAGCAACCTCCGGAGCATCCTGGACCAACACGATGTGCGCCTGGTGGGCGT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS TCA 72 bp | GCACATCGTGTTGGTCCAGGATGCTCCGGAGGTTGCTaGGGTCCTGGGCGATCCAGCGGCACACCATGCAGC | + |
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Preference number: 6 (lower is better) Translates to: AHRVGPGCSGGC*GPGRSSGTPCS Trigger: GCTGCATGGTGTGCCGCTGGATCGCCCAGGACCTCAGCAACCTCCGGAGCATCCTGGACCAACACGATGTGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS GCA 72 bp | AAGCGTCGCAGACCGGCCACCACACAAGCTTTCTCCTaGCATAGGCTCCGCAGCTCCACAGCCTCCCCAGTC | + |
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Preference number: 6 (lower is better) Translates to: KRRRPATTQAFS*HRLRSSTASPV Trigger: GACTGGGGAGGCTGTGGAGCTGCGGAGCCTATGGCAGGAGAAAGCTTGTGTGGTGGCCGGTCTGCGACGCTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS CCA 72 bp | TGTTGGTCCAGGATGCTCCGGAGGTTGCTGAGGTCCTaGGCGATCCAGCGGCACACCATGCAGCCGAAGCGT | + |
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Preference number: 6 (lower is better) Translates to: CWSRMLRRLLRS*AIQRHTMQPKR Trigger: ACGCTTCGGCTGCATGGTGTGCCGCTGGATCGCCCAGGACCTCAGCAACCTCCGGAGCATCCTGGACCAACA 64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS CAA 72 bp | AGGCGCACATCGTGTTGGTCCAGGATGCTCCGGAGGTaGCTGAGGTCCTGGGCGATCCAGCGGCACACCATG | + |
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Preference number: 6 (lower is better) Translates to: RRTSCWSRMLRR*LRSWAIQRHTM Trigger: CATGGTGTGCCGCTGGATCGCCCAGGACCTCAGCAACCTCCGGAGCATCCTGGACCAACACGATGTGCGCCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS CAA 72 bp | GTCGCCACCCTTGCTGACCACCAGCAGCCCTCCACTTaGCAGCAGGTCACCAGACAGGTTCCCCTGGATACC | + |
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Preference number: 6 (lower is better) Translates to: VATLADHQQPST*QQVTRQVPLDT Trigger: GGTATCCAGGGGAACCTGTCTGGTGACCTGCTGCAAAGTGGAGGGCTGCTGGTGGTCAGCAAGGGTGGCGAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS GCA 72 bp | TCGCCACCCTTGCTGACCACCAGCAGCCCTCCACTTTaGAGCAGGTCACCAGACAGGTTCCCCTGGATACCA | + |
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Preference number: 6 (lower is better) Translates to: SPPLLTTSSPPL*SRSPDRFPWIP Trigger: TGGTATCCAGGGGAACCTGTCTGGTGACCTGCTGCAAAGTGGAGGGCTGCTGGTGGTCAGCAAGGGTGGCGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS GCA 72 bp | GACCCACCCTTGCTGACCACCAGCAGCCCTCCACTTTaGAGCAGGTCACCAGACAGGTTCCCCTGGATACCA | + |
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Preference number: 6 (lower is better) Translates to: DPPLLTTSSPPL*SRSPDRFPWIP Trigger: TGGTATCCAGGGGAACCTGTCTGGTGACCTGCTGCAAAGTGGAGGGCTGCTGGTGGTCAGCAAGGGTGGGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000132281.2 |
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| CDS CAA 72 bp | TCACCCGGGGACTTCTGGATGAAGTGCAACAGTACCTaGTCGCCACCCTTGCTGACCACCAGCAGCCCTCCA | + |
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Preference number: 6 (lower is better) Translates to: SPGDFWMKCNST*SPPLLTTSSPP Trigger: TGGAGGGCTGCTGGTGGTCAGCAAGGGTGGCGACAAGGTACTGTTGCACTTCATCCAGAAGTCCCCGGGTGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS CAA 90 bp | CAGTACCTTGTCGCCACCCTTGCTGACCACCAGCAGCCCTCCACTTaGCAGCAGGTCACCAGACAGGTTCCCCTGGATACCAACAGCTTT | + |
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Preference number: 6 (lower is better) Translates to: QYLVATLADHQQPST*QQVTRQVPLDTNSF Trigger: AAAGCTGTTGGTATCCAGGGGAACCTGTCTGGTGACCTGCTGCAAAGTGGAGGGCTGCTGGTGGTCAGCAAGGGTGGCGACAAGGTACTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS GCA 72 bp | ACCTCCCACACACCTCTTCATCACACTGGGGTGGCTTaGTGGAGCAAACCTCTGCAGAGATACCCAAGGCCT | + |
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Preference number: 6 (lower is better) Translates to: TSHTPLHHTGVA*WSKPLQRYPRP Trigger: AGGCCTTGGGTATCTCTGCAGAGGTTTGCTCCAGCAAGCCACCCCAGTGTGATGAAGAGGTGTGTGGGAGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS CAA 72 bp | TTCTGGATGAAGTGCAACAGTACCTTGTCGCCACCCTaGCTGACCACCAGCAGCCCTCCACTTTGCAGCAGG | + |
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Preference number: 6 (lower is better) Translates to: FWMKCNSTLSPP*LTTSSPPLCSR Trigger: CCTGCTGCAAAGTGGAGGGCTGCTGGTGGTCAGCAAGGGTGGCGACAAGGTACTGTTGCACTTCATCCAGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS CAA 90 bp | AGCAGGTCACCAGACAGGTTCCCCTGGATACCAACAGCTTTAGCCTaGGAGGCTACATCACGAACAGGTTTTCCCAGGGCAGCTGGTAGG | + |
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Preference number: 6 (lower is better) Translates to: SRSPDRFPWIPTALA*EATSRTGFPRAAGR Trigger: CCTACCAGCTGCCCTGGGAAAACCTGTTCGTGATGTAGCCTCCAAGGCTAAAGCTGTTGGTATCCAGGGGAACCTGTCTGGTGACCTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030935.10 ENSMUST00000132281.2 |
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| CDS GCA 72 bp | TTCATCACACTGGGGTGGCTTGCTGGAGCAAACCTCTaGAGAGATACCCAAGGCCTGCAGGATGTTCTCCTG | + |
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Preference number: 6 (lower is better) Translates to: FITLGWLAGANL*RDTQGLQDVLL Trigger: CAGGAGAACATCCTGCAGGCCTTGGGTATCTCTGCAGAGGTTTGCTCCAGCAAGCCACCCCAGTGTGATGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030935.10 |
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| CDS CCA 72 bp | CCTCCACTTTGCAGCAGGTCACCAGACAGGTTCCCCTaGATACCAACAGCTTTAGCCTTGGAGGCTACATCA | + |
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Preference number: 6 (lower is better) Translates to: PPLCSRSPDRFP*IPTALALEATS Trigger: TGATGTAGCCTCCAAGGCTAAAGCTGTTGGTATCCAGGGGAACCTGTCTGGTGACCTGCTGCAAAGTGGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030935.10 ENSMUST00000132281.2 |
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| CDS CAA 72 bp | CCAGACAGGTTCCCCTGGATACCAACAGCTTTAGCCTaGGAGGCTACATCACGAACAGGTTTTCCCAGGGCA | + |
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Preference number: 6 (lower is better) Translates to: PDRFPWIPTALA*EATSRTGFPRA Trigger: TGCCCTGGGAAAACCTGTTCGTGATGTAGCCTCCAAGGCTAAAGCTGTTGGTATCCAGGGGAACCTGTCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030935.10 ENSMUST00000132281.2 |
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| CDS TCA 72 bp | ATAGATTTGCTTGCTCTCATCAAGGTAGAGTTCTCCTaGGAAGTAACCACCATCCAGAAACTCCTGCAGGCC | + |
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Preference number: 6 (lower is better) Translates to: IDLLALIKVEFS*EVTTIQKLLQA Trigger: GGCCTGCAGGAGTTTCTGGATGGTGGTTACTTCTCAGGAGAACTCTACCTTGATGAGAGCAAGCAAATCTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030935.10 ENSMUST00000132281.2 |
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