Pregenerated sensors for PRXL2A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021792Ensembl transcript IDs: ENSMUST00000022317.15, ENSMUST00000118466.8
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATTCTTAGTAAATATGGTGCAAGGGCCTTCTGGCTCTTGGGGCCCTaGGGAAAGCACAGCTCATCTGATGAACACAGCACAGGCCCCGTG | + |
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Preference number: 1 (lower is better) Translates to: ILSKYGARAFWLLGP*GKHSSSDEHSTGPV Trigger: CACGGGGCCTGTGCTGTGTTCATCAGATGAGCTGTGCTTTCCCCAGGGCCCCAAGAGCCAGAAGGCCCTTGCACCATATTTACTAAGAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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| 3UTR GCA 90 bp | GTGACAGTTTCCCAGGTGACAGTTTTTCCCAAGGAAGCAAATCTCTaGGTCTATAAGGGAAGACCACAGAACCTTCACTTTGTAATTTAC | + |
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Preference number: 1 (lower is better) Translates to: VTVSQVTVFPKEANL*VYKGRPQNLHFVIY Trigger: GTAAATTACAAAGTGAAGGTTCTGTGGTCTTCCCTTATAGACGCAGAGATTTGCTTCCTTGGGAAAAACTGTCACCTGGGAAACTGTCAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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| 3UTR-3UTR GCA 90 bp | AGTCAGCCATCAGCTTTTCTTAGGAGAGAGAGAGAGAGTGTGTGTGTGTGTGTGACAGCACAGGCCCCGTaGGTTCTCTCCCAGCCAGCA | + |
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Preference number: 2 (lower is better) Translates to: SQPSAFLRRERESVCVCVTAQAP*VLSQPA Trigger: TGCTGGCTGGGAGAGAACGCACGGGGCCTGTGCTGT...CACACACACACACACACTCTCTCTCTCTCTCCTAAGAAAAGCTGATGGCTGACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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| 3UTR-3UTR CCA 90 bp | CTGTCTGTCTGTCTGGGTATCCCACTTAGGGCCATGTGCATGTTAGGTAAATGCTGGCTCTTGGGGCCCTaGGGAAAGCACAGCTCATCT | + |
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Preference number: 2 (lower is better) Translates to: LSVCLGIPLRAMCMLGKCWLLGP*GKHSSS Trigger: AGATGAGCTGTGCTTTCCCCAGGGCCCCAAGAGCCA...GCATTTACCTAACATGCACATGGCCCTAAGTGGGATACCCAGACAGACAGACAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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| 3UTR-3UTR CCA 90 bp | CTAGATCTTTCCTCAAATAACTCTCACTGGTTTGTTAGATTGAACTCTGTTCTGGGTGCAAGGGCCTTCTaGCTCTTGGGGCCCTGGGGA | + |
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Preference number: 2 (lower is better) Translates to: LDLSSNNSHWFVRLNSVLGARAF*LLGPWG Trigger: TCCCCAGGGCCCCAAGAGCCAGAAGGCCCTTGCACC...CAGAACAGAGTTCAATCTAACAAACCAGTGAGAGTTATTTGAGGAAAGATCTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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| 3UTR-3UTR CCA 90 bp | TACCGGCACTTAGGACATATTCCTTTGAAAGAAGCTTCAGCAGTAAACTTTAAAGGTGCAAGGGCCTTCTaGCTCTTGGGGCCCTGGGGA | + |
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Preference number: 2 (lower is better) Translates to: YRHLGHIPLKEASAVNFKGARAF*LLGPWG Trigger: TCCCCAGGGCCCCAAGAGCCAGAAGGCCCTTGCACC...TTTAAAGTTTACTGCTGAAGCTTCTTTCAAAGGAATATGTCCTAAGTGCCGGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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| 3UTR-3UTR GCA 90 bp | TACCGGCACTTAGGACATATTCCTTTGAAAGAAGCTTCAGCAGTAAACTTTAAAACAGCACAGGCCCCGTaGGTTCTCTCCCAGCCAGCA | + |
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Preference number: 2 (lower is better) Translates to: YRHLGHIPLKEASAVNFKTAQAP*VLSQPA Trigger: TGCTGGCTGGGAGAGAACGCACGGGGCCTGTGCTGT...TTTAAAGTTTACTGCTGAAGCTTCTTTCAAAGGAATATGTCCTAAGTGCCGGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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| 3UTR-3UTR GCA 90 bp | AGTCAGCCATCAGCTTTTCTTAGGAGAGAGAGAGAGAGTGTGTGTGTGTGTGTGCCACTTAGGGCCATGTaGATGTTAGGTAAATGCTCC | + |
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Preference number: 2 (lower is better) Translates to: SQPSAFLRRERESVCVCVPLRAM*MLGKCS Trigger: GGAGCATTTACCTAACATGCACATGGCCCTAAGTGG...CACACACACACACACACTCTCTCTCTCTCTCCTAAGAAAAGCTGATGGCTGACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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| 3UTR-3UTR CCA 90 bp | TTCAAATACCGGCACTTAGGACATATTCCTTTGAAAGAAGCTTCAGCAGTAAACTGGCTCTTGGGGCCCTaGGGAAAGCACAGCTCATCT | + |
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Preference number: 2 (lower is better) Translates to: FKYRHLGHIPLKEASAVNWLLGP*GKHSSS Trigger: AGATGAGCTGTGCTTTCCCCAGGGCCCCAAGAGCCA...GTTTACTGCTGAAGCTTCTTTCAAAGGAATATGTCCTAAGTGCCGGTATTTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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| 3UTR CAA 90 bp | AATTTTCTAGATCTTTCCTCAAATAACTCTCACTGGTTTGTTAGATaGAACTCTGTTCTGTCTGGGACCCTATTTGCCCTACTGGGCCTA | + |
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Preference number: 2 (lower is better) Translates to: NFLDLSSNNSHWFVR*NSVLSGTLFALLGL Trigger: TAGGCCCAGTAGGGCAAATAGGGTCCCAGACAGAACAGAGTTCAATCTAACAAACCAGTGAGAGTTATTTGAGGAAAGATCTAGAAAATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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| 3UTR CCA 72 bp | AAATATGGTGCAAGGGCCTTCTGGCTCTTGGGGCCCTaGGGAAAGCACAGCTCATCTGATGAACACAGCACA | + |
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Preference number: 3 (lower is better) Translates to: KYGARAFWLLGP*GKHSSSDEHST Trigger: TGTGCTGTGTTCATCAGATGAGCTGTGCTTTCCCCAGGGCCCCAAGAGCCAGAAGGCCCTTGCACCATATTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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| 3UTR CCA 72 bp | TCACCAATTCTTAGTAAATATGGTGCAAGGGCCTTCTaGCTCTTGGGGCCCTGGGGAAAGCACAGCTCATCT | + |
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Preference number: 3 (lower is better) Translates to: SPILSKYGARAF*LLGPWGKHSSS Trigger: AGATGAGCTGTGCTTTCCCCAGGGCCCCAAGAGCCAGAAGGCCCTTGCACCATATTTACTAAGAATTGGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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| 3UTR GCA 72 bp | CTGTCTGTCTGTCTGGGTATCCCACTTAGGGCCATGTaGATGTTAGGTAAATGCTCCACCACTGAGCTGTTT | + |
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Preference number: 3 (lower is better) Translates to: LSVCLGIPLRAM*MLGKCSTTELF Trigger: AAACAGCTCAGTGGTGGAGCATTTACCTAACATGCACATGGCCCTAAGTGGGATACCCAGACAGACAGACAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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| 3UTR-3UTR CAA 90 bp | CTGTCTGTCTGTCTGGGTATCCCACTTAGGGCCATGTGCATGTTAGGTAAATGCTTAGGACATATTCCTTaGAAAGAAGCTTCAGCAGTA | + |
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Preference number: 3 (lower is better) Translates to: LSVCLGIPLRAMCMLGKCLGHIP*KEASAV Trigger: TACTGCTGAAGCTTCTTTCAAAGGAATATGTCCTAA...GCATTTACCTAACATGCACATGGCCCTAAGTGGGATACCCAGACAGACAGACAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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| 3UTR TCA 72 bp | ATCTTTCCTCAAATAACTCTCACTGGTTTGTTAGATTaGACTCTGTTCTGTCTGGGACCCTATTTGCCCTAC | + |
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Preference number: 3 (lower is better) Translates to: IFPQITLTGLLD*TLFCLGPYLPY Trigger: GTAGGGCAAATAGGGTCCCAGACAGAACAGAGTTCAATCTAACAAACCAGTGAGAGTTATTTGAGGAAAGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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| CDS-3UTR GCA 90 bp | CTGTCTGTCTGTCTGGGTATCCCACTTAGGGCCATGTGCATGTTAGGTAAATGCGTTGGCCAGGAGCAGTaGCACAGCAGCGGCCCCCAC | + |
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Preference number: 4 (lower is better) Translates to: LSVCLGIPLRAMCMLGKCVGQEQ*HSSGPH Trigger: GTGGGGGCCGCTGCTGTGGCACTGCTCCTGGCCAAC...GCATTTACCTAACATGCACATGGCCCTAAGTGGGATACCCAGACAGACAGACAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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| CDS-3UTR GCA 90 bp | TACCGGCACTTAGGACATATTCCTTTGAAAGAAGCTTCAGCAGTAAACTTTAAAGTTGGCCAGGAGCAGTaGCACAGCAGCGGCCCCCAC | + |
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Preference number: 4 (lower is better) Translates to: YRHLGHIPLKEASAVNFKVGQEQ*HSSGPH Trigger: GTGGGGGCCGCTGCTGTGGCACTGCTCCTGGCCAAC...TTTAAAGTTTACTGCTGAAGCTTCTTTCAAAGGAATATGTCCTAAGTGCCGGTA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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| CDS-3UTR GCA 90 bp | TTGAACTCTGTTCTGTCTGGGACCCTATTTGCCCTACTGGGCCTAAACGGAATGGGTGCTCAAGAAGGATaGCCTGTTTTCCAGATCCTA | + |
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Preference number: 4 (lower is better) Translates to: LNSVLSGTLFALLGLNGMGAQEG*PVFQIL Trigger: TAGGATCTGGAAAACAGGGCATCCTTCTTGAGCACC...CATTCCGTTTAGGCCCAGTAGGGCAAATAGGGTCCCAGACAGAACAGAGTTCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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| CDS-3UTR CCA 90 bp | TTGAACTCTGTTCTGTCTGGGACCCTATTTGCCCTACTGGGCCTAAACGGAATGCTAGCTCATCCAACTTaGGCTTCAAGGACATCAGGT | + |
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Preference number: 4 (lower is better) Translates to: LNSVLSGTLFALLGLNGMLAHPT*ASRTSG Trigger: ACCTGATGTCCTTGAAGCCCAAGTTGGATGAGCTAG...CATTCCGTTTAGGCCCAGTAGGGCAAATAGGGTCCCAGACAGAACAGAGTTCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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| CDS-3UTR CCA 90 bp | TTTCCCAAGGAAGCAAATCTCTGCGTCTATAAGGGAAGACCACAGAACCTTCACCTGCTTTTCGGGGCTTaGACAGAAACATGTCTGTGT | + |
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Preference number: 4 (lower is better) Translates to: FPKEANLCVYKGRPQNLHLLFGA*TETCLC Trigger: ACACAGACATGTTTCTGTCCAAGCCCCGAAAAGCAG...GTGAAGGTTCTGTGGTCTTCCCTTATAGACGCAGAGATTTGCTTCCTTGGGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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| CDS-3UTR TCA 90 bp | TTGAACTCTGTTCTGTCTGGGACCCTATTTGCCCTACTGGGCCTAAACGGAATGGGAAGATTTCCCCTTTaGAGTAAGGTTGGAAATCTT | + |
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Preference number: 4 (lower is better) Translates to: LNSVLSGTLFALLGLNGMGRFPL*SKVGNL Trigger: AAGATTTCCAACCTTACTTCAAAGGGGAAATCTTCC...CATTCCGTTTAGGCCCAGTAGGGCAAATAGGGTCCCAGACAGAACAGAGTTCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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| CDS-3UTR TCA 90 bp | TTTCCCAAGGAAGCAAATCTCTGCGTCTATAAGGGAAGACCACAGAACCTTCACCTGGAGTCTGTAGCTTaGTTTTCTTTACAGCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: FPKEANLCVYKGRPQNLHLESVA*FSLQPP Trigger: TGGAGGCTGTAAAGAAAATCAAGCTACAGACTCCAG...GTGAAGGTTCTGTGGTCTTCCCTTATAGACGCAGAGATTTGCTTCCTTGGGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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| CDS-3UTR GCA 90 bp | TTATCAAGTCAGCCATCAGCTTTTCTTAGGAGAGAGAGAGAGAGTGTGTGTGTGGGTGCTCAAGAAGGATaGCCTGTTTTCCAGATCCTA | + |
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Preference number: 4 (lower is better) Translates to: LSSQPSAFLRRERESVCVGAQEG*PVFQIL Trigger: TAGGATCTGGAAAACAGGGCATCCTTCTTGAGCACC...CACACACACACTCTCTCTCTCTCTCCTAAGAAAAGCTGATGGCTGACTTGATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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| CDS-3UTR CCA 90 bp | CCACCACTGAGCTGTTTCTTAGCCGCACTTTTCTCAGATTTCAGGTTTGTTTGTCTGCTTTTCGGGGCTTaGACAGAAACATGTCTGTGT | + |
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Preference number: 4 (lower is better) Translates to: PPLSCFLAALFSDFRFVCLLFGA*TETCLC Trigger: ACACAGACATGTTTCTGTCCAAGCCCCGAAAAGCAG...ACAAACAAACCTGAAATCTGAGAAAAGTGCGGCTAAGAAACAGCTCAGTGGTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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| CDS-3UTR CCA 90 bp | TACCGGCACTTAGGACATATTCCTTTGAAAGAAGCTTCAGCAGTAAACTTTAAAGAAACATGTCTGTGTTaGCCAGGAGCAGTGCCACAG | + |
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Preference number: 4 (lower is better) Translates to: YRHLGHIPLKEASAVNFKETCLC*PGAVPQ Trigger: CTGTGGCACTGCTCCTGGCCAACACAGACATGTTTC...TTTAAAGTTTACTGCTGAAGCTTCTTTCAAAGGAATATGTCCTAAGTGCCGGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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| CDS-3UTR CCA 90 bp | AGTCAGCCATCAGCTTTTCTTAGGAGAGAGAGAGAGAGTGTGTGTGTGTGTGTGTGCTTTGAATGTCCTTaGTTCTTTCTCCAGTGTTTT | + |
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Preference number: 4 (lower is better) Translates to: SQPSAFLRRERESVCVCVCFECP*FFLQCF Trigger: AAAACACTGGAGAAAGAACCAAGGACATTCAAAGCA...CACACACACACACACACTCTCTCTCTCTCTCCTAAGAAAAGCTGATGGCTGACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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| CDS-3UTR CCA 90 bp | AAATACCGGCACTTAGGACATATTCCTTTGAAAGAAGCTTCAGCAGTAAACTTTGCAGAGAAAGCAGCCTaGCCTGCGTACAGCCATAAT | + |
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Preference number: 4 (lower is better) Translates to: KYRHLGHIPLKEASAVNFAEKAA*PAYSHN Trigger: ATTATGGCTGTACGCAGGCCAGGCTGCTTTCTCTGC...AAAGTTTACTGCTGAAGCTTCTTTCAAAGGAATATGTCCTAAGTGCCGGTATTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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| 3UTR CAA 72 bp | GATCTTTCCTCAAATAACTCTCACTGGTTTGTTAGATaGAACTCTGTTCTGTCTGGGACCCTATTTGCCCTA | + |
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Preference number: 4 (lower is better) Translates to: DLSSNNSHWFVR*NSVLSGTLFAL Trigger: TAGGGCAAATAGGGTCCCAGACAGAACAGAGTTCAATCTAACAAACCAGTGAGAGTTATTTGAGGAAAGATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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| CDS-3UTR CCA 90 bp | TACCGGCACTTAGGACATATTCCTTTGAAAGAAGCTTCAGCAGTAAACTTTAAACTAGCTCATCCAACTTaGGCTTCAAGGACATCAGGT | + |
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Preference number: 4 (lower is better) Translates to: YRHLGHIPLKEASAVNFKLAHPT*ASRTSG Trigger: ACCTGATGTCCTTGAAGCCCAAGTTGGATGAGCTAG...TTTAAAGTTTACTGCTGAAGCTTCTTTCAAAGGAATATGTCCTAAGTGCCGGTA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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| CDS-3UTR CCA 90 bp | CTAGATCTTTCCTCAAATAACTCTCACTGGTTTGTTAGATTGAACTCTGTTCTGCATGGAGAAGAAACTTaGGTCCTGGAGAAAAGACAT | + |
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Preference number: 4 (lower is better) Translates to: LDLSSNNSHWFVRLNSVLHGEET*VLEKRH Trigger: ATGTCTTTTCTCCAGGACCCAAGTTTCTTCTCCATG...CAGAACAGAGTTCAATCTAACAAACCAGTGAGAGTTATTTGAGGAAAGATCTAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118466.8 |
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| CDS-3UTR TCA 90 bp | CTAGATCTTTCCTCAAATAACTCTCACTGGTTTGTTAGATTGAACTCTGTTCTGGGAAGATTTCCCCTTTaGAGTAAGGTTGGAAATCTT | + |
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Preference number: 4 (lower is better) Translates to: LDLSSNNSHWFVRLNSVLGRFPL*SKVGNL Trigger: AAGATTTCCAACCTTACTTCAAAGGGGAAATCTTCC...CAGAACAGAGTTCAATCTAACAAACCAGTGAGAGTTATTTGAGGAAAGATCTAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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| CDS-3UTR CAA 90 bp | CTGTCTGTCTGTCTGGGTATCCCACTTAGGGCCATGTGCATGTTAGGTAAATGCAGAAACATGTCTGTGTaGGCCAGGAGCAGTGCCACA | + |
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Preference number: 5 (lower is better) Translates to: LSVCLGIPLRAMCMLGKCRNMSV*ARSSAT Trigger: TGTGGCACTGCTCCTGGCCAACACAGACATGTTTCT...GCATTTACCTAACATGCACATGGCCCTAAGTGGGATACCCAGACAGACAGACAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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| CDS-3UTR CAA 90 bp | CTGTCTGTCTGTCTGGGTATCCCACTTAGGGCCATGTGCATGTTAGGTAAATGCGCTGGAGTCTGTAGCTaGATTTTCTTTACAGCCTCC | + |
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Preference number: 5 (lower is better) Translates to: LSVCLGIPLRAMCMLGKCAGVCS*IFFTAS Trigger: GGAGGCTGTAAAGAAAATCAAGCTACAGACTCCAGC...GCATTTACCTAACATGCACATGGCCCTAAGTGGGATACCCAGACAGACAGACAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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| CDS-3UTR CAA 90 bp | TTTCCCAAGGAAGCAAATCTCTGCGTCTATAAGGGAAGACCACAGAACCTTCACGCTGGAGTCTGTAGCTaGATTTTCTTTACAGCCTCC | + |
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Preference number: 5 (lower is better) Translates to: FPKEANLCVYKGRPQNLHAGVCS*IFFTAS Trigger: GGAGGCTGTAAAGAAAATCAAGCTACAGACTCCAGC...GTGAAGGTTCTGTGGTCTTCCCTTATAGACGCAGAGATTTGCTTCCTTGGGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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| CDS-3UTR CAA 90 bp | CTAGATCTTTCCTCAAATAACTCTCACTGGTTTGTTAGATTGAACTCTGTTCTGAGAAACATGTCTGTGTaGGCCAGGAGCAGTGCCACA | + |
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Preference number: 5 (lower is better) Translates to: LDLSSNNSHWFVRLNSVLRNMSV*ARSSAT Trigger: TGTGGCACTGCTCCTGGCCAACACAGACATGTTTCT...CAGAACAGAGTTCAATCTAACAAACCAGTGAGAGTTATTTGAGGAAAGATCTAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022317.15 ENSMUST00000118466.8 |
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