RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PRTG (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036030

Ensembl transcript IDs: ENSMUST00000055535.9

Found 270 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GCTGTGGAGCAAAGGGAAAGGTGGTTTTGCAGGCTGAGGGCAGGCTaGTGCAGGCTGGAGCAAAATTCTCCTGCTCTGGTGTCCCAAACC +
Preference number: 1 (lower is better)
Translates to: AVEQRERWFCRLRAG*CRLEQNSPALVSQT
Trigger: GGTTTGGGACACCAGAGCAGGAGAATTTTGCTCCAGCCTGCATCAGCCTGCCCTCAGCCTGCAAAACCACCTTTCCCTTTGCTCCACAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR GCA 90 bp TTGCAGGCTGAGGGCAGGCTGATGCAGGCTGGAGCAAAATTCTCCTaGTCTGGTGTCCCAAACCCAACAGCTTTGCAAGGACACGATCCC +
Preference number: 1 (lower is better)
Translates to: LQAEGRLMQAGAKFS*SGVPNPTALQGHDP
Trigger: GGGATCGTGTCCTTGCAAAGCTGTTGGGTTTGGGACACCAGAGCAGGAGAATTTTGCTCCAGCCTGCATCAGCCTGCCCTCAGCCTGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR TCA 90 bp AGTGCGTACCCCAGTCTCTGCTGCATTGCTGCCATTGCTCGTGTCTaGGGTAAAGGCAAGAGAGCTTCTAACAAACACATCAGGAGCATC +
Preference number: 1 (lower is better)
Translates to: SAYPSLCCIAAIARV*GKGKRASNKHIRSI
Trigger: GATGCTCCTGATGTGTTTGTTAGAAGCTCTCTTGCCTTTACCTCAGACACGAGCAATGGCAGCAATGCAGCAGAGACTGGGGTACGCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR GCA 90 bp CTGGAGCAAAATTCTCCTGCTCTGGTGTCCCAAACCCAACAGCTTTaGAAGGACACGATCCCCTATGTACTATGGAATGTTCTCTTCTCC +
Preference number: 1 (lower is better)
Translates to: LEQNSPALVSQTQQL*KDTIPYVLWNVLFS
Trigger: GGAGAAGAGAACATTCCATAGTACATAGGGGATCGTGTCCTTGCAAAGCTGTTGGGTTTGGGACACCAGAGCAGGAGAATTTTGCTCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR CCA 90 bp CGAGAAGCCCATGGTGAATGGGACAGAACTGTGCTGAGTAGTGCCTaGGCTTCTAAGAAAGTCCAATTTGGCACAAAACTTAGAATGACG +
Preference number: 1 (lower is better)
Translates to: REAHGEWDRTVLSSA*ASKKVQFGTKLRMT
Trigger: CGTCATTCTAAGTTTTGTGCCAAATTGGACTTTCTTAGAAGCCCAGGCACTACTCAGCACAGTTCTGTCCCATTCACCATGGGCTTCTCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR TCA 90 bp TATGGAAGCAGCACACCATGTAGTAAAAACACACCTGAGACTGAGTaGGCAGACACCATGGAAATAAATCCTCAGGACGCTGTCTGCACA +
Preference number: 1 (lower is better)
Translates to: YGSSTPCSKNTPETE*ADTMEINPQDAVCT
Trigger: TGTGCAGACAGCGTCCTGAGGATTTATTTCCATGGTGTCTGCTCACTCAGTCTCAGGTGTGTTTTTACTACATGGTGTGCTGCTTCCATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR CCA 90 bp TTGCCTTCTAAATGTCAACAAAATTCACAATTAGACAGACAGATATaGGTGGTGGTCTCCAGAACCCACCACTCTGTGCTCACACAGCCC +
Preference number: 1 (lower is better)
Translates to: LPSKCQQNSQLDRQI*VVVSRTHHSVLTQP
Trigger: GGGCTGTGTGAGCACAGAGTGGTGGGTTCTGGAGACCACCACCCATATCTGTCTGTCTAATTGTGAATTTTGTTGACATTTAGAAGGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR TCA 90 bp AGAGAGGGTTTTACAGCAGGAAACTGCCTCAAAAAGAAAGAGTTCTaGCCTACAGACCTTCAACACTGTGCGGTGCTGTTTACAGACACT +
Preference number: 1 (lower is better)
Translates to: REGFTAGNCLKKKEF*PTDLQHCAVLFTDT
Trigger: AGTGTCTGTAAACAGCACCGCACAGTGTTGAAGGTCTGTAGGTCAGAACTCTTTCTTTTTGAGGCAGTTTCCTGCTGTAAAACCCTCTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR CCA 90 bp CTTCACACTTTAGTTGGAATTTCGTACTTCAGACTTCAGAGAGGCTaGCTTTCACCAAGCCTAAAACCTCTGTTGAACATTAAATACTTT +
Preference number: 1 (lower is better)
Translates to: LHTLVGISYFRLQRG*LSPSLKPLLNIKYF
Trigger: AAAGTATTTAATGTTCAACAGAGGTTTTAGGCTTGGTGAAAGCCAGCCTCTCTGAAGTCTGAAGTACGAAATTCCAACTAAAGTGTGAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR CAA 90 bp ACAGCGCAGCCCTTGGCCGGCTGTGGAGCAAAGGGAAAGGTGGTTTaGCAGGCTGAGGGCAGGCTGATGCAGGCTGGAGCAAAATTCTCC +
Preference number: 2 (lower is better)
Translates to: TAQPLAGCGAKGKVV*QAEGRLMQAGAKFS
Trigger: GGAGAATTTTGCTCCAGCCTGCATCAGCCTGCCCTCAGCCTGCAAAACCACCTTTCCCTTTGCTCCACAGCCGGCCAAGGGCTGCGCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR-3UTR GCA 90 bp GGGGTTCCCACAATACAGACAAGCCTGATGCTCTCTCTGCCGACCTATCACCCTAAGGCTTTGGCTCCCTaGTCATTGTCCTTCGAACAG +
Preference number: 2 (lower is better)
Translates to: GVPTIQTSLMLSLPTYHPKALAP*SLSFEQ
Trigger: CTGTTCGAAGGACAATGAGCAGGGAGCCAAAGCCTT...AGGGTGATAGGTCGGCAGAGAGAGCATCAGGCTTGTCTGTATTGTGGGAACCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR-3UTR GCA 90 bp GGGGTTCCCACAATACAGACAAGCCTGATGCTCTCTCTGCCGACCTATCACCCTGTTGTCTTCAGAGTCTaGCCACAGCAAACTGAGGTA +
Preference number: 2 (lower is better)
Translates to: GVPTIQTSLMLSLPTYHPVVFRV*PQQTEV
Trigger: TACCTCAGTTTGCTGTGGGCAGACTCTGAAGACAAC...AGGGTGATAGGTCGGCAGAGAGAGCATCAGGCTTGTCTGTATTGTGGGAACCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR-3UTR GCA 90 bp CAGAGCACGTTCTTCCAGAAATGTCCTGTCCCAGCCTTTCGGATGATCCAGGCAGCAGCTTCATCAAGGTaGCAGATAGCACAGCTATCG +
Preference number: 2 (lower is better)
Translates to: QSTFFQKCPVPAFRMIQAAASSR*QIAQLS
Trigger: CGATAGCTGTGCTATCTGGCACCTTGATGAAGCTGC...TGCCTGGATCATCCGAAAGGCTGGGACAGGACATTTCTGGAAGAACGTGCTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR CAA 90 bp AGAGAGACAGCAGTGCGTACCCCAGTCTCTGCTGCATTGCTGCCATaGCTCGTGTCTGAGGTAAAGGCAAGAGAGCTTCTAACAAACACA +
Preference number: 2 (lower is better)
Translates to: RETAVRTPVSAALLP*LVSEVKARELLTNT
Trigger: TGTGTTTGTTAGAAGCTCTCTTGCCTTTACCTCAGACACGAGCAATGGCAGCAATGCAGCAGAGACTGGGGTACGCACTGCTGTCTCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR-3UTR CCA 90 bp CAGAGCACGTTCTTCCAGAAATGTCCTGTCCCAGCCTTTCGGATGATCCAGGCATTTCACAAAAGGCTTTaGCTCCCTGCTCATTGTCCT +
Preference number: 2 (lower is better)
Translates to: QSTFFQKCPVPAFRMIQAFHKRL*LPAHCP
Trigger: AGGACAATGAGCAGGGAGCCAAAGCCTTTTGTGAAA...TGCCTGGATCATCCGAAAGGCTGGGACAGGACATTTCTGGAAGAACGTGCTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR-3UTR CCA 90 bp TGCACAGAGGAGAGGTTCTGGAGAGACAGTTTGTTAACACAAAACAACAAACAAGCCCTTGGCCGGCTGTaGAGCAAAGGGAAAGGTGGT +
Preference number: 2 (lower is better)
Translates to: CTEERFWRDSLLTQNNKQALGRL*SKGKGG
Trigger: ACCACCTTTCCCTTTGCTCCACAGCCGGCCAAGGGC...TTGTTTGTTGTTTTGTGTTAACAAACTGTCTCTCCAGAACCTCTCCTCTGTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR-3UTR CCA 90 bp GATACTGAGAGAAGTTGGCCCACGTACTTCTACTTACGAACCAAACACCACCATACAGCACACACACAATaGACACACAGCGTCACTAGC +
Preference number: 2 (lower is better)
Translates to: DTERSWPTYFYLRTKHHHTAHTQ*THSVTS
Trigger: GCTAGTGACGCTGTGTGTCCATTGTGTGTGTGCTGT...ATGGTGGTGTTTGGTTCGTAAGTAGAAGTACGTGGGCCAACTTCTCTCAGTATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR-3UTR CCA 90 bp TGCACAGAGGAGAGGTTCTGGAGAGACAGTTTGTTAACACAAAACAACAAACAAGAGCAAAGGGAAAGGTaGTTTTGCAGGCTGAGGGCA +
Preference number: 2 (lower is better)
Translates to: CTEERFWRDSLLTQNNKQEQRER*FCRLRA
Trigger: TGCCCTCAGCCTGCAAAACCACCTTTCCCTTTGCTC...TTGTTTGTTGTTTTGTGTTAACAAACTGTCTCTCCAGAACCTCTCCTCTGTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR CAA 90 bp AGAGGCACATCTGTGTTCAGGCTTATCTGCAGGAAGGGTTTTAGTTaGGGAATGGACCAGATACTACAGGACAGGGCAAATAAGAAAAAC +
Preference number: 2 (lower is better)
Translates to: RGTSVFRLICRKGFS*GMDQILQDRANKKN
Trigger: GTTTTTCTTATTTGCCCTGTCCTGTAGTATCTGGTCCATTCCCAAACTAAAACCCTTCCTGCAGATAAGCCTGAACACAGATGTGCCTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR-3UTR TCA 90 bp GATACTGAGAGAAGTTGGCCCACGTACTTCTACTTACGAACCAAACACCACCATAAGGCACTGCTATTATaGAAACCTCAAGTCTGTCTT +
Preference number: 2 (lower is better)
Translates to: DTERSWPTYFYLRTKHHHKALLL*KPQVCL
Trigger: AAGACAGACTTGAGGTTTTCATAATAGCAGTGCCTT...ATGGTGGTGTTTGGTTCGTAAGTAGAAGTACGTGGGCCAACTTCTCTCAGTATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR-3UTR GCA 90 bp ACAACAGTAACTGACAGACACATTTTCTTAATATATCTCCTAAGCCCTACTAAGCCATTTGGCAGGACCTaGCTTGTCTGTGCATGGAGG +
Preference number: 2 (lower is better)
Translates to: TTVTDRHIFLIYLLSPTKPFGRT*LVCAWR
Trigger: CCTCCATGCACAGACAAGGCAGGTCCTGCCAAATGG...CTTAGTAGGGCTTAGGAGATATATTAAGAAAATGTGTCTGTCAGTTACTGTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR-3UTR TCA 90 bp ACAACAGTAACTGACAGACACATTTTCTTAATATATCTCCTAAGCCCTACTAAGGCCATTGCTCGTGTCTaGGGTAAAGGCAAGAGAGCT +
Preference number: 2 (lower is better)
Translates to: TTVTDRHIFLIYLLSPTKAIARV*GKGKRA
Trigger: AGCTCTCTTGCCTTTACCTCAGACACGAGCAATGGC...CTTAGTAGGGCTTAGGAGATATATTAAGAAAATGTGTCTGTCAGTTACTGTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR-3UTR GCA 90 bp ACAACAGTAACTGACAGACACATTTTCTTAATATATCTCCTAAGCCCTACTAAGCAGTCTCTGCTGCATTaGTGCCATTGCTCGTGTCTG +
Preference number: 2 (lower is better)
Translates to: TTVTDRHIFLIYLLSPTKQSLLH*CHCSCL
Trigger: CAGACACGAGCAATGGCAGCAATGCAGCAGAGACTG...CTTAGTAGGGCTTAGGAGATATATTAAGAAAATGTGTCTGTCAGTTACTGTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR-3UTR GCA 90 bp AAGAAAATCTTGCAAAATACATGGTTGCTTCAGGTACCAGCTCTTTACAATACATCTGACTTCCTAAAATaGATGCTGCCCCCTTCCTCC +
Preference number: 2 (lower is better)
Translates to: KKILQNTWLLQVPALYNTSDFLK*MLPPSS
Trigger: GGAGGAAGGGGGCAGCATGCATTTTAGGAAGTCAGA...TGTATTGTAAAGAGCTGGTACCTGAAGCAACCATGTATTTTGCAAGATTTTCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR-3UTR TCA 90 bp ACAACAGTAACTGACAGACACATTTTCTTAATATATCTCCTAAGCCCTACTAAGACACCTGAGACTGAGTaGGCAGACACCATGGAAATA +
Preference number: 2 (lower is better)
Translates to: TTVTDRHIFLIYLLSPTKTPETE*ADTMEI
Trigger: TATTTCCATGGTGTCTGCTCACTCAGTCTCAGGTGT...CTTAGTAGGGCTTAGGAGATATATTAAGAAAATGTGTCTGTCAGTTACTGTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR-3UTR GCA 90 bp ACAACAGTAACTGACAGACACATTTTCTTAATATATCTCCTAAGCCCTACTAAGTGTTTGCAGAAGTCCTaGAGAAGAGAGACAGCAGTG +
Preference number: 2 (lower is better)
Translates to: TTVTDRHIFLIYLLSPTKCLQKS*RRETAV
Trigger: CACTGCTGTCTCTCTTCTGCAGGACTTCTGCAAACA...CTTAGTAGGGCTTAGGAGATATATTAAGAAAATGTGTCTGTCAGTTACTGTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR-3UTR CCA 90 bp CTAATTTGCATGTCAGCTTATTTGGAGTTGAATACGATGAATAATGAAACCTCGGTGCTGAGTAGTGCCTaGGCTTCTAAGAAAGTCCAA +
Preference number: 2 (lower is better)
Translates to: LICMSAYLELNTMNNETSVLSSA*ASKKVQ
Trigger: TTGGACTTTCTTAGAAGCCCAGGCACTACTCAGCAC...CGAGGTTTCATTATTCATCGTATTCAACTCCAAATAAGCTGACATGCAAATTAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR CAA 90 bp AAACAAACAATAAACAGTAAGACATCAAGATTTTCACAAAAGGCTTaGGCTCCCTGCTCATTGTCCTTCGAACAGGTGCTTGTTGTGAAT +
Preference number: 2 (lower is better)
Translates to: KQTINSKTSRFSQKA*APCSLSFEQVLVVN
Trigger: ATTCACAACAAGCACCTGTTCGAAGGACAATGAGCAGGGAGCCAAAGCCTTTTGTGAAAATCTTGATGTCTTACTGTTTATTGTTTGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR-3UTR TCA 90 bp ACAACAGTAACTGACAGACACATTTTCTTAATATATCTCCTAAGCCCTACTAAGTCCAGTCAAGCATCTTaGCTGCCCTTTTTCACATTG +
Preference number: 2 (lower is better)
Translates to: TTVTDRHIFLIYLLSPTKSSQAS*LPFFTL
Trigger: CAATGTGAAAAAGGGCAGTCAAGATGCTTGACTGGA...CTTAGTAGGGCTTAGGAGATATATTAAGAAAATGTGTCTGTCAGTTACTGTTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR-3UTR GCA 90 bp AAGAAAATCTTGCAAAATACATGGTTGCTTCAGGTACCAGCTCTTTACAATACAGGACATCTGATGATATaGAAATGTACAGAATCGAAC +
Preference number: 2 (lower is better)
Translates to: KKILQNTWLLQVPALYNTGHLMI*KCTESN
Trigger: GTTCGATTCTGTACATTTGCATATCATCAGATGTCC...TGTATTGTAAAGAGCTGGTACCTGAAGCAACCATGTATTTTGCAAGATTTTCTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR-3UTR CCA 90 bp AAGAAAATCTTGCAAAATACATGGTTGCTTCAGGTACCAGCTCTTTACAATACACCTTCACACTTTAGTTaGAATTTCGTACTTCAGACT +
Preference number: 2 (lower is better)
Translates to: KKILQNTWLLQVPALYNTPSHFS*NFVLQT
Trigger: AGTCTGAAGTACGAAATTCCAACTAAAGTGTGAAGG...TGTATTGTAAAGAGCTGGTACCTGAAGCAACCATGTATTTTGCAAGATTTTCTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR-3UTR CAA 90 bp GGGGTTCCCACAATACAGACAAGCCTGATGCTCTCTCTGCCGACCTATCACCCTTCGGCACCTAGCATGTaGCCTTGTGACGGAGAAGGC +
Preference number: 3 (lower is better)
Translates to: GVPTIQTSLMLSLPTYHPSAPSM*PCDGEG
Trigger: GCCTTCTCCGTCACAAGGCAACATGCTAGGTGCCGA...AGGGTGATAGGTCGGCAGAGAGAGCATCAGGCTTGTCTGTATTGTGGGAACCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR TCA 72 bp CAAAGGGAAAGGTGGTTTTGCAGGCTGAGGGCAGGCTaGTGCAGGCTGGAGCAAAATTCTCCTGCTCTGGTG +
Preference number: 3 (lower is better)
Translates to: QRERWFCRLRAG*CRLEQNSPALV
Trigger: CACCAGAGCAGGAGAATTTTGCTCCAGCCTGCATCAGCCTGCCCTCAGCCTGCAAAACCACCTTTCCCTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR GCA 72 bp GAGGGCAGGCTGATGCAGGCTGGAGCAAAATTCTCCTaGTCTGGTGTCCCAAACCCAACAGCTTTGCAAGGA +
Preference number: 3 (lower is better)
Translates to: EGRLMQAGAKFS*SGVPNPTALQG
Trigger: TCCTTGCAAAGCTGTTGGGTTTGGGACACCAGAGCAGGAGAATTTTGCTCCAGCCTGCATCAGCCTGCCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR TCA 72 bp CCAGAGTTCAGCCGCCAGGGTGATAGGGAGCAAACCTaGGCTTCAAAAAGAGAGCAGCTTCATCAAGGTGCC +
Preference number: 3 (lower is better)
Translates to: PEFSRQGDREQT*ASKREQLHQGA
Trigger: GGCACCTTGATGAAGCTGCTCTCTTTTTGAAGCTCAGGTTTGCTCCCTATCACCCTGGCGGCTGAACTCTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR GCA 72 bp GCACTCGAAGAAGGCAGCACAGTTGTCTTCAGAGTCTaGCCACAGCAAACTGAGGTAGCTATTCAGCAGAGG +
Preference number: 3 (lower is better)
Translates to: ALEEGSTVVFRV*PQQTEVAIQQR
Trigger: CCTCTGCTGAATAGCTACCTCAGTTTGCTGTGGGCAGACTCTGAAGACAACTGTGCTGCCTTCTTCGAGTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR-3UTR CAA 90 bp CTAGCATGTTGCCTTGTGACGGAGAAGGCTGCCGGATCAGAAGAGGAGACAATTTTGGCTCCCTGCTCATaGTCCTTCGAACAGGTGCTT +
Preference number: 3 (lower is better)
Translates to: LACCLVTEKAAGSEEETILAPCS*SFEQVL
Trigger: AAGCACCTGTTCGAAGGACAATGAGCAGGGAGCCAA...AATTGTCTCCTCTTCTGATCCGGCAGCCTTCTCCGTCACAAGGCAACATGCTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR TCA 72 bp TTTCTTCATGAGATGGAGCCTGCAGAGCTGGTCCCCTaGGACAAGCAGAAATCGAATGTAACCCAGCTCCAC +
Preference number: 3 (lower is better)
Translates to: FLHEMEPAELVP*DKQKSNVTQLH
Trigger: GTGGAGCTGGGTTACATTCGATTTCTGCTTGTCTCAGGGGACCAGCTCTGCAGGCTCCATCTCATGAAGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR CCA 72 bp CCGTATTTGAACCCAAAGCACTGCCCGTCCGAACAGTaGCACCTTTTGGTTTCCTCAAGCTGTCTGAGTATC +
Preference number: 3 (lower is better)
Translates to: PYLNPKHCPSEQ*HLLVSSSCLSI
Trigger: GATACTCAGACAGCTTGAGGAAACCAAAAGGTGCCACTGTTCGGACGGGCAGTGCTTTGGGTTCAAATACGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR-3UTR CAA 90 bp AGGCTGGAGCAAAATTCTCCTGCTCTGGTGTCCCAAACCCAACAGCTTTGCAAGTTTTCACAAAAGGCTTaGGCTCCCTGCTCATTGTCC +
Preference number: 3 (lower is better)
Translates to: RLEQNSPALVSQTQQLCKFSQKA*APCSLS
Trigger: GGACAATGAGCAGGGAGCCAAAGCCTTTTGTGAAAA...CTTGCAAAGCTGTTGGGTTTGGGACACCAGAGCAGGAGAATTTTGCTCCAGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR TCA 72 bp CGTTCTTCCAGAAATGTCCTGTCCCAGCCTTTCGGATaGTCCAGGCAGGGAACACGGTTTAAATATGCATGG +
Preference number: 3 (lower is better)
Translates to: RSSRNVLSQPFG*SRQGTRFKYAW
Trigger: CCATGCATATTTAAACCGTGTTCCCTGCCTGGATCATCCGAAAGGCTGGGACAGGACATTTCTGGAAGAACG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR TCA 72 bp CCCAGTCTCTGCTGCATTGCTGCCATTGCTCGTGTCTaGGGTAAAGGCAAGAGAGCTTCTAACAAACACATC +
Preference number: 3 (lower is better)
Translates to: PSLCCIAAIARV*GKGKRASNKHI
Trigger: GATGTGTTTGTTAGAAGCTCTCTTGCCTTTACCTCAGACACGAGCAATGGCAGCAATGCAGCAGAGACTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR CCA 72 bp AGCCAGGAAATGGTGCCCTTACAAGGAAGCAGAGAGTaGCAGGACCCAGAACACCCACTACAGAAAATAACT +
Preference number: 3 (lower is better)
Translates to: SQEMVPLQGSRE*QDPEHPLQKIT
Trigger: AGTTATTTTCTGTAGTGGGTGTTCTGGGTCCTGCCACTCTCTGCTTCCTTGTAAGGGCACCATTTCCTGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR-3UTR CAA 90 bp CACCCTCACAGGCTGTATGGAAGCAGCACACCATGTAGTAAAAACACACCTGAGCCCTTTTCGATCTGTTaGCTTCTGACTTGTGATCCC +
Preference number: 3 (lower is better)
Translates to: HPHRLYGSSTPCSKNTPEPFSIC*LLTCDP
Trigger: GGGATCACAAGTCAGAAGCAAACAGATCGAAAAGGG...CTCAGGTGTGTTTTTACTACATGGTGTGCTGCTTCCATACAGCCTGTGAGGGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR GCA 72 bp TCTACTTACGAACCAAACACCACCATACCCTGTCAATaGACCCGCCCATGCAACATGAGCTCAAGAGTAACA +
Preference number: 3 (lower is better)
Translates to: STYEPNTTIPCQ*TRPCNMSSRVT
Trigger: TGTTACTCTTGAGCTCATGTTGCATGGGCGGGTGCATTGACAGGGTATGGTGGTGTTTGGTTCGTAAGTAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR GCA 72 bp GCAGACACCATGGAAATAAATCCTCAGGACGCTGTCTaGACAGAGGAGAGGTTCTGGAGAGACAGTTTGTTA +
Preference number: 3 (lower is better)
Translates to: ADTMEINPQDAV*TEERFWRDSLL
Trigger: TAACAAACTGTCTCTCCAGAACCTCTCCTCTGTGCAGACAGCGTCCTGAGGATTTATTTCCATGGTGTCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR-3UTR CAA 90 bp AAGAAAATCTTGCAAAATACATGGTTGCTTCAGGTACCAGCTCTTTACAATACAAAGACAGCGCAGCCCTaGGCCGGCTGTGGAGCAAAG +
Preference number: 3 (lower is better)
Translates to: KKILQNTWLLQVPALYNTKTAQP*AGCGAK
Trigger: CTTTGCTCCACAGCCGGCCAAGGGCTGCGCTGTCTT...TGTATTGTAAAGAGCTGGTACCTGAAGCAACCATGTATTTTGCAAGATTTTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR TCA 72 bp AATGTACAGAATCGAACCATGAATTACAGCAGGCTCTaGCTTCCTAAAATGCATGCTGCCCCCTTCCTCCGA +
Preference number: 3 (lower is better)
Translates to: NVQNRTMNYSRL*LPKMHAAPFLR
Trigger: TCGGAGGAAGGGGGCAGCATGCATTTTAGGAAGTCAGAGCCTGCTGTAATTCATGGTTCGATTCTGTACATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR GCA 72 bp AATTCTCCTGCTCTGGTGTCCCAAACCCAACAGCTTTaGAAGGACACGATCCCCTATGTACTATGGAATGTT +
Preference number: 3 (lower is better)
Translates to: NSPALVSQTQQL*KDTIPYVLWNV
Trigger: AACATTCCATAGTACATAGGGGATCGTGTCCTTGCAAAGCTGTTGGGTTTGGGACACCAGAGCAGGAGAATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR GCA 72 bp CTAAGAGGCAGAGGCACATCTGTGTTCAGGCTTATCTaGAGGAAGGGTTTTAGTTTGGGAATGGACCAGATA +
Preference number: 3 (lower is better)
Translates to: LRGRGTSVFRLI*RKGFSLGMDQI
Trigger: TATCTGGTCCATTCCCAAACTAAAACCCTTCCTGCAGATAAGCCTGAACACAGATGTGCCTCTGCCTCTTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR CCA 72 bp CATGGTGAATGGGACAGAACTGTGCTGAGTAGTGCCTaGGCTTCTAAGAAAGTCCAATTTGGCACAAAACTT +
Preference number: 3 (lower is better)
Translates to: HGEWDRTVLSSA*ASKKVQFGTKL
Trigger: AAGTTTTGTGCCAAATTGGACTTTCTTAGAAGCCCAGGCACTACTCAGCACAGTTCTGTCCCATTCACCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR CCA 72 bp CCCATTGTGCCCTTCATTTTAGATACTGAGAGAAGTTaGCCCACGTACTTCTACTTACGAACCAAACACCAC +
Preference number: 3 (lower is better)
Translates to: PIVPFILDTERS*PTYFYLRTKHH
Trigger: GTGGTGTTTGGTTCGTAAGTAGAAGTACGTGGGCCAACTTCTCTCAGTATCTAAAATGAAGGGCACAATGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR-3UTR CAA 90 bp TTAGGCAGTCTTCCCTCCGCTCCAGTGATTTATCTTAGAGTCCAGTCAAGCATCCTGCCCTTTTTCACATaGTTGACAGTTGAAACATTC +
Preference number: 3 (lower is better)
Translates to: LGSLPSAPVIYLRVQSSILPFFT*LTVETF
Trigger: GAATGTTTCAACTGTCAACAATGTGAAAAAGGGCAG...GATGCTTGACTGGACTCTAAGATAAATCACTGGAGCGGAGGGAAGACTGCCTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR-3UTR CAA 90 bp ACAACAGTAACTGACAGACACATTTTCTTAATATATCTCCTAAGCCCTACTAAGAAGGGAAAGGTGGTTTaGCAGGCTGAGGGCAGGCTG +
Preference number: 3 (lower is better)
Translates to: TTVTDRHIFLIYLLSPTKKGKVV*QAEGRL
Trigger: CAGCCTGCCCTCAGCCTGCAAAACCACCTTTCCCTT...CTTAGTAGGGCTTAGGAGATATATTAAGAAAATGTGTCTGTCAGTTACTGTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR TCA 72 bp TTTACAGCAGGAAACTGCCTCAAAAAGAAAGAGTTCTaGCCTACAGACCTTCAACACTGTGCGGTGCTGTTT +
Preference number: 3 (lower is better)
Translates to: FTAGNCLKKKEF*PTDLQHCAVLF
Trigger: AAACAGCACCGCACAGTGTTGAAGGTCTGTAGGTCAGAACTCTTTCTTTTTGAGGCAGTTTCCTGCTGTAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR CCA 72 bp AATCCTCAGGACGCTGTCTGCACAGAGGAGAGGTTCTaGAGAGACAGTTTGTTAACACAAAACAACAAACAA +
Preference number: 3 (lower is better)
Translates to: NPQDAVCTEERF*RDSLLTQNNKQ
Trigger: TTGTTTGTTGTTTTGTGTTAACAAACTGTCTCTCCAGAACCTCTCCTCTGTGCAGACAGCGTCCTGAGGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR CCA 72 bp AAATGTCAACAAAATTCACAATTAGACAGACAGATATaGGTGGTGGTCTCCAGAACCCACCACTCTGTGCTC +
Preference number: 3 (lower is better)
Translates to: KCQQNSQLDRQI*VVVSRTHHSVL
Trigger: GAGCACAGAGTGGTGGGTTCTGGAGACCACCACCCATATCTGTCTGTCTAATTGTGAATTTTGTTGACATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR CCA 72 bp TCAGGCTTATCTGCAGGAAGGGTTTTAGTTTGGGAATaGACCAGATACTACAGGACAGGGCAAATAAGAAAA +
Preference number: 3 (lower is better)
Translates to: SGLSAGRVLVWE*TRYYRTGQIRK
Trigger: TTTTCTTATTTGCCCTGTCCTGTAGTATCTGGTCCATTCCCAAACTAAAACCCTTCCTGCAGATAAGCCTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR-3UTR CAA 90 bp CTAATTTGCATGTCAGCTTATTTGGAGTTGAATACGATGAATAATGAAACCTCGAAGAAGGCAGCACAGTaGTCTTCAGAGTCTGCCCAC +
Preference number: 3 (lower is better)
Translates to: LICMSAYLELNTMNNETSKKAAQ*SSESAH
Trigger: GTGGGCAGACTCTGAAGACAACTGTGCTGCCTTCTT...CGAGGTTTCATTATTCATCGTATTCAACTCCAAATAAGCTGACATGCAAATTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR-3UTR CAA 90 bp AAGAAAATCTTGCAAAATACATGGTTGCTTCAGGTACCAGCTCTTTACAATACAGCTGCATTGCTGCCATaGCTCGTGTCTGAGGTAAAG +
Preference number: 3 (lower is better)
Translates to: KKILQNTWLLQVPALYNTAALLP*LVSEVK
Trigger: CTTTACCTCAGACACGAGCAATGGCAGCAATGCAGC...TGTATTGTAAAGAGCTGGTACCTGAAGCAACCATGTATTTTGCAAGATTTTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR CCA 72 bp TTAGTTGGAATTTCGTACTTCAGACTTCAGAGAGGCTaGCTTTCACCAAGCCTAAAACCTCTGTTGAACATT +
Preference number: 3 (lower is better)
Translates to: LVGISYFRLQRG*LSPSLKPLLNI
Trigger: AATGTTCAACAGAGGTTTTAGGCTTGGTGAAAGCCAGCCTCTCTGAAGTCTGAAGTACGAAATTCCAACTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR-3UTR CAA 90 bp TGCACAGAGGAGAGGTTCTGGAGAGACAGTTTGTTAACACAAAACAACAAACAAATCCACTTTCCTACATaGTATTTTGCAGCTAGCTCT +
Preference number: 3 (lower is better)
Translates to: CTEERFWRDSLLTQNNKQIHFPT*YFAASS
Trigger: AGAGCTAGCTGCAAAATACAATGTAGGAAAGTGGAT...TTGTTTGTTGTTTTGTGTTAACAAACTGTCTCTCCAGAACCTCTCCTCTGTGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR TCA 72 bp ACATCTGATGATATGCAAATGTACAGAATCGAACCATaGATTACAGCAGGCTCTGACTTCCTAAAATGCATG +
Preference number: 3 (lower is better)
Translates to: TSDDMQMYRIEP*ITAGSDFLKCM
Trigger: CATGCATTTTAGGAAGTCAGAGCCTGCTGTAATTCATGGTTCGATTCTGTACATTTGCATATCATCAGATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR-3UTR CAA 90 bp ACAACAGTAACTGACAGACACATTTTCTTAATATATCTCCTAAGCCCTACTAAGTTGCAAAATACATGGTaGCTTCAGGTACCAGCTCTT +
Preference number: 3 (lower is better)
Translates to: TTVTDRHIFLIYLLSPTKLQNTW*LQVPAL
Trigger: AAGAGCTGGTACCTGAAGCAACCATGTATTTTGCAA...CTTAGTAGGGCTTAGGAGATATATTAAGAAAATGTGTCTGTCAGTTACTGTTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR TCA 72 bp AGGCAAAATTTCTCACAATGGAAGGCACTGCTATTATaGAAACCTCAAGTCTGTCTTAATCTCTACTGTTTC +
Preference number: 3 (lower is better)
Translates to: RQNFSQWKALLL*KPQVCLNLYCF
Trigger: GAAACAGTAGAGATTAAGACAGACTTGAGGTTTTCATAATAGCAGTGCCTTCCATTGTGAGAAATTTTGCCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR GCA 72 bp TCCACATCTGGTATTCAAAATGGACATCTGATGATATaGAAATGTACAGAATCGAACCATGAATTACAGCAG +
Preference number: 3 (lower is better)
Translates to: STSGIQNGHLMI*KCTESNHELQQ
Trigger: CTGCTGTAATTCATGGTTCGATTCTGTACATTTGCATATCATCAGATGTCCATTTTGAATACCAGATGTGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR CCA 72 bp CAGTTCAAACTCTTTTTCCACATCTGGTATTCAAAATaGACATCTGATGATATGCAAATGTACAGAATCGAA +
Preference number: 3 (lower is better)
Translates to: QFKLFFHIWYSK*TSDDMQMYRIE
Trigger: TTCGATTCTGTACATTTGCATATCATCAGATGTCCATTTTGAATACCAGATGTGGAAAAAGAGTTTGAACTG
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR CAA 72 bp CCCTTGGCCGGCTGTGGAGCAAAGGGAAAGGTGGTTTaGCAGGCTGAGGGCAGGCTGATGCAGGCTGGAGCA +
Preference number: 4 (lower is better)
Translates to: PLAGCGAKGKVV*QAEGRLMQAGA
Trigger: TGCTCCAGCCTGCATCAGCCTGCCCTCAGCCTGCAAAACCACCTTTCCCTTTGCTCCACAGCCGGCCAAGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CCA 90 bp GTCTGTGCATGGAGGGACGGTTTCAAGGGAAAACCCACGGAGGGCTTTTCTTTTGGCCCCGCCGGTACTTaGCCGGGATTGGCAGCCAGG +
Preference number: 4 (lower is better)
Translates to: VCAWRDGFKGKPTEGFSFGPAGT*PGLAAR
Trigger: CCTGGCTGCCAATCCCGGCCAAGTACCGGCGGGGCC...AAAAGAAAAGCCCTCCGTGGGTTTTCCCTTGAAACCGTCCCTCCATGCACAGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CCA 90 bp AGGCTGGAGCAAAATTCTCCTGCTCTGGTGTCCCAAACCCAACAGCTTTGCAAGGTGGGGTGGCGGTGGTaGAGGGACCATGCGATCACG +
Preference number: 4 (lower is better)
Translates to: RLEQNSPALVSQTQQLCKVGWRW*RDHAIT
Trigger: CGTGATCGCATGGTCCCTCCACCACCGCCACCCCAC...CTTGCAAAGCTGTTGGGTTTGGGACACCAGAGCAGGAGAATTTTGCTCCAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR GCA 90 bp CACCCTCACAGGCTGTATGGAAGCAGCACACCATGTAGTAAAAACACACCTGAGGTGGTGGAGGGACCATaGGATCACGGACGGACACGC +
Preference number: 4 (lower is better)
Translates to: HPHRLYGSSTPCSKNTPEVVEGP*DHGRTR
Trigger: GCGTGTCCGTCCGTGATCGCATGGTCCCTCCACCAC...CTCAGGTGTGTTTTTACTACATGGTGTGCTGCTTCCATACAGCCTGTGAGGGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CCA 90 bp CAGAGCACGTTCTTCCAGAAATGTCCTGTCCCAGCCTTTCGGATGATCCAGGCAGAAGTTACGTGTGCCTaGGGTGGTGGCCCGACAAAC +
Preference number: 4 (lower is better)
Translates to: QSTFFQKCPVPAFRMIQAEVTCA*GGGPTN
Trigger: GTTTGTCGGGCCACCACCCCAGGCACACGTAACTTC...TGCCTGGATCATCCGAAAGGCTGGGACAGGACATTTCTGGAAGAACGTGCTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR TCA 90 bp AGGCTGGAGCAAAATTCTCCTGCTCTGGTGTCCCAAACCCAACAGCTTTGCAAGGATCTGCAACACTCCTaGTGGCAGGGCAGTCACCCT +
Preference number: 4 (lower is better)
Translates to: RLEQNSPALVSQTQQLCKDLQHS*WQGSHP
Trigger: AGGGTGACTGCCCTGCCATCAGGAGTGTTGCAGATC...CTTGCAAAGCTGTTGGGTTTGGGACACCAGAGCAGGAGAATTTTGCTCCAGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CCA 90 bp GATACTGAGAGAAGTTGGCCCACGTACTTCTACTTACGAACCAAACACCACCATCGGTACAGCACCACTTaGCCCCGCCGGTACTTGGCC +
Preference number: 4 (lower is better)
Translates to: DTERSWPTYFYLRTKHHHRYSTT*PRRYLA
Trigger: GGCCAAGTACCGGCGGGGCCAAGTGGTGCTGTACCG...ATGGTGGTGTTTGGTTCGTAAGTAGAAGTACGTGGGCCAACTTCTCTCAGTATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CCA 90 bp AGGCTGGAGCAAAATTCTCCTGCTCTGGTGTCCCAAACCCAACAGCTTTGCAAGCTGCTACAGAGGCACTaGCTTGGGATAACGGCTGGG +
Preference number: 4 (lower is better)
Translates to: RLEQNSPALVSQTQQLCKLLQRH*LGITAG
Trigger: CCCAGCCGTTATCCCAAGCCAGTGCCTCTGTAGCAG...CTTGCAAAGCTGTTGGGTTTGGGACACCAGAGCAGGAGAATTTTGCTCCAGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CCA 90 bp GGGGTTCCCACAATACAGACAAGCCTGATGCTCTCTCTGCCGACCTATCACCCTGAATCCCCTGTCTCATaGCTGCCTTCACTGTTCGCT +
Preference number: 4 (lower is better)
Translates to: GVPTIQTSLMLSLPTYHPESPVS*LPSLFA
Trigger: AGCGAACAGTGAAGGCAGCCATGAGACAGGGGATTC...AGGGTGATAGGTCGGCAGAGAGAGCATCAGGCTTGTCTGTATTGTGGGAACCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR CAA 72 bp GCAGTGCGTACCCCAGTCTCTGCTGCATTGCTGCCATaGCTCGTGTCTGAGGTAAAGGCAAGAGAGCTTCTA +
Preference number: 4 (lower is better)
Translates to: AVRTPVSAALLP*LVSEVKARELL
Trigger: TAGAAGCTCTCTTGCCTTTACCTCAGACACGAGCAATGGCAGCAATGCAGCAGAGACTGGGGTACGCACTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR TCA 90 bp GTCTGTGCATGGAGGGACGGTTTCAAGGGAAAACCCACGGAGGGCTTTTCTTTTCCAGCAAAGCCATGGTaGTTGCCCCTTCTCGGTGAA +
Preference number: 4 (lower is better)
Translates to: VCAWRDGFKGKPTEGFSFPAKPW*LPLLGE
Trigger: TTCACCGAGAAGGGGCAATCACCATGGCTTTGCTGG...AAAAGAAAAGCCCTCCGTGGGTTTTCCCTTGAAACCGTCCCTCCATGCACAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR TCA 90 bp GGGGTTCCCACAATACAGACAAGCCTGATGCTCTCTCTGCCGACCTATCACCCTTGCGATGCCCGTCATTaGCTTTTGGTCCAGATGGTA +
Preference number: 4 (lower is better)
Translates to: GVPTIQTSLMLSLPTYHPCDARH*LLVQMV
Trigger: TACCATCTGGACCAAAAGTCAATGACGGGCATCGCA...AGGGTGATAGGTCGGCAGAGAGAGCATCAGGCTTGTCTGTATTGTGGGAACCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CCA 90 bp CTAGCATGTTGCCTTGTGACGGAGAAGGCTGCCGGATCAGAAGAGGAGACAATTGTACTTGGCCGGGATTaGCAGCCAGGAGACGAGAAT +
Preference number: 4 (lower is better)
Translates to: LACCLVTEKAAGSEEETIVLGRD*QPGDEN
Trigger: ATTCTCGTCTCCTGGCTGCCAATCCCGGCCAAGTAC...AATTGTCTCCTCTTCTGATCCGGCAGCCTTCTCCGTCACAAGGCAACATGCTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CCA 90 bp GGGGTTCCCACAATACAGACAAGCCTGATGCTCTCTCTGCCGACCTATCACCCTTCCAGTGCAGGAAGATaGAAGAGGAGGTATTCGCCT +
Preference number: 4 (lower is better)
Translates to: GVPTIQTSLMLSLPTYHPSSAGR*KRRYSP
Trigger: AGGCGAATACCTCCTCTTCCATCTTCCTGCACTGGA...AGGGTGATAGGTCGGCAGAGAGAGCATCAGGCTTGTCTGTATTGTGGGAACCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR GCA 90 bp CTAGCATGTTGCCTTGTGACGGAGAAGGCTGCCGGATCAGAAGAGGAGACAATTACCAGAGAGGCATTCTaGAGGCCAACAGGGTTACAG +
Preference number: 4 (lower is better)
Translates to: LACCLVTEKAAGSEEETITREAF*RPTGLQ
Trigger: CTGTAACCCTGTTGGCCTGCAGAATGCCTCTCTGGT...AATTGTCTCCTCTTCTGATCCGGCAGCCTTCTCCGTCACAAGGCAACATGCTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CCA 90 bp CACCCTCACAGGCTGTATGGAAGCAGCACACCATGTAGTAAAAACACACCTGAGTACGTGTGCCTGGGGTaGTGGCCCGACAAACATACA +
Preference number: 4 (lower is better)
Translates to: HPHRLYGSSTPCSKNTPEYVCLG*WPDKHT
Trigger: TGTATGTTTGTCGGGCCACCACCCCAGGCACACGTA...CTCAGGTGTGTTTTTACTACATGGTGTGCTGCTTCCATACAGCCTGTGAGGGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CCA 90 bp CTAGCATGTTGCCTTGTGACGGAGAAGGCTGCCGGATCAGAAGAGGAGACAATTAGACGAGAATGTCGGTaGGACTTCGACTCGTCAAGC +
Preference number: 4 (lower is better)
Translates to: LACCLVTEKAAGSEEETIRRECR*DFDSSS
Trigger: GCTTGACGAGTCGAAGTCCCACCGACATTCTCGTCT...AATTGTCTCCTCTTCTGATCCGGCAGCCTTCTCCGTCACAAGGCAACATGCTAG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR TCA 90 bp CTAGCATGTTGCCTTGTGACGGAGAAGGCTGCCGGATCAGAAGAGGAGACAATTGGCGATGACCTTGTCTaGATTGTACAGTGGTCTCTC +
Preference number: 4 (lower is better)
Translates to: LACCLVTEKAAGSEEETIGDDLV*IVQWSL
Trigger: GAGAGACCACTGTACAATTCAGACAAGGTCATCGCC...AATTGTCTCCTCTTCTGATCCGGCAGCCTTCTCCGTCACAAGGCAACATGCTAG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CCA 90 bp CAGAGCACGTTCTTCCAGAAATGTCCTGTCCCAGCCTTTCGGATGATCCAGGCACGTTGTAAGGAGCGCTaGGTCTATCTTCCGACATTA +
Preference number: 4 (lower is better)
Translates to: QSTFFQKCPVPAFRMIQARCKER*VYLPTL
Trigger: TAATGTCGGAAGATAGACCCAGCGCTCCTTACAACG...TGCCTGGATCATCCGAAAGGCTGGGACAGGACATTTCTGGAAGAACGTGCTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CCA 90 bp CTAGCATGTTGCCTTGTGACGGAGAAGGCTGCCGGATCAGAAGAGGAGACAATTCAGATAGACACTGTCTaGCTTCAGGCCTTCCAGAAG +
Preference number: 4 (lower is better)
Translates to: LACCLVTEKAAGSEEETIQIDTV*LQAFQK
Trigger: CTTCTGGAAGGCCTGAAGCCAGACAGTGTCTATCTG...AATTGTCTCCTCTTCTGATCCGGCAGCCTTCTCCGTCACAAGGCAACATGCTAG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR TCA 90 bp GTCTGTGCATGGAGGGACGGTTTCAAGGGAAAACCCACGGAGGGCTTTTCTTTTACATCAATGGACTTGTaGTCAAGACGGCTCCAGGAA +
Preference number: 4 (lower is better)
Translates to: VCAWRDGFKGKPTEGFSFTSMDL*SRRLQE
Trigger: TTCCTGGAGCCGTCTTGATCACAAGTCCATTGATGT...AAAAGAAAAGCCCTCCGTGGGTTTTCCCTTGAAACCGTCCCTCCATGCACAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR TCA 90 bp CAGAGCACGTTCTTCCAGAAATGTCCTGTCCCAGCCTTTCGGATGATCCAGGCAGTACAGAGTAGGCGATaGCCTTGTCTGAATTGTACA +
Preference number: 4 (lower is better)
Translates to: QSTFFQKCPVPAFRMIQAVQSRR*PCLNCT
Trigger: TGTACAATTCAGACAAGGTCATCGCCTACTCTGTAC...TGCCTGGATCATCCGAAAGGCTGGGACAGGACATTTCTGGAAGAACGTGCTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR GCA 90 bp AAGACATCAAGATTTTCACAAAAGGCTTTGGCTCCCTGCTCATTGTCCTTCGAAAGCCCCGCAGATGTCTaGGGAGCTGAGGTCTGCTCA +
Preference number: 4 (lower is better)
Translates to: KTSRFSQKALAPCSLSFESPADV*GAEVCS
Trigger: TGAGCAGACCTCAGCTCCGCAGACATCTGCGGGGCT...TTCGAAGGACAATGAGCAGGGAGCCAAAGCCTTTTGTGAAAATCTTGATGTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CCA 90 bp GTCTGTGCATGGAGGGACGGTTTCAAGGGAAAACCCACGGAGGGCTTTTCTTTTGACCTCAGTAGACACTaGATGGACTTCAAACGCAGA +
Preference number: 4 (lower is better)
Translates to: VCAWRDGFKGKPTEGFSFDLSRH*MDFKRR
Trigger: TCTGCGTTTGAAGTCCATCCAGTGTCTACTGAGGTC...AAAAGAAAAGCCCTCCGTGGGTTTTCCCTTGAAACCGTCCCTCCATGCACAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CCA 90 bp GATACTGAGAGAAGTTGGCCCACGTACTTCTACTTACGAACCAAACACCACCATTGTCACCACTGTCTCTaGGCCATCTGGGGGTTTCCA +
Preference number: 4 (lower is better)
Translates to: DTERSWPTYFYLRTKHHHCHHCL*AIWGFP
Trigger: TGGAAACCCCCAGATGGCCCAGAGACAGTGGTGACA...ATGGTGGTGTTTGGTTCGTAAGTAGAAGTACGTGGGCCAACTTCTCTCAGTATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CCA 90 bp GTCTGTGCATGGAGGGACGGTTTCAAGGGAAAACCCACGGAGGGCTTTTCTTTTCAATCCAGGCCTTCCTaGAAGCATACAAGATGGTGT +
Preference number: 4 (lower is better)
Translates to: VCAWRDGFKGKPTEGFSFQSRPS*KHTRWC
Trigger: ACACCATCTTGTATGCTTCCAGGAAGGCCTGGATTG...AAAAGAAAAGCCCTCCGTGGGTTTTCCCTTGAAACCGTCCCTCCATGCACAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CCA 90 bp GATACTGAGAGAAGTTGGCCCACGTACTTCTACTTACGAACCAAACACCACCATAGCTGCTGGGCATCATaGGTACCAAGGACTCTGCAG +
Preference number: 4 (lower is better)
Translates to: DTERSWPTYFYLRTKHHHSCWAS*VPRTLQ
Trigger: CTGCAGAGTCCTTGGTACCCATGATGCCCAGCAGCT...ATGGTGGTGTTTGGTTCGTAAGTAGAAGTACGTGGGCCAACTTCTCTCAGTATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR CAA 72 bp GCTAAGGACTTGTTTCTTCTTTTCACAGCTCAGTCTTaGTCCTTCCCACGTGGCTCGGCACCTAGCATGTTG +
Preference number: 4 (lower is better)
Translates to: AKDLFLLFTAQS*SFPRGSAPSML
Trigger: CAACATGCTAGGTGCCGAGCCACGTGGGAAGGACAAAGACTGAGCTGTGAAAAGAAGAAACAAGTCCTTAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR GCA 90 bp CAGAGCACGTTCTTCCAGAAATGTCCTGTCCCAGCCTTTCGGATGATCCAGGCATACACTCCAGCATGCTaGAGCTTGACATCTGATATA +
Preference number: 4 (lower is better)
Translates to: QSTFFQKCPVPAFRMIQAYTPAC*SLTSDI
Trigger: TATATCAGATGTCAAGCTGCAGCATGCTGGAGTGTA...TGCCTGGATCATCCGAAAGGCTGGGACAGGACATTTCTGGAAGAACGTGCTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR GCA 90 bp AAGACATCAAGATTTTCACAAAAGGCTTTGGCTCCCTGCTCATTGTCCTTCGAAGCAGGCCTCCTCCAGTaGAGGAAGATGGAAGAGGAG +
Preference number: 4 (lower is better)
Translates to: KTSRFSQKALAPCSLSFEAGLLQ*RKMEEE
Trigger: CTCCTCTTCCATCTTCCTGCACTGGAGGAGGCCTGC...TTCGAAGGACAATGAGCAGGGAGCCAAAGCCTTTTGTGAAAATCTTGATGTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR GCA 90 bp TGCACAGAGGAGAGGTTCTGGAGAGACAGTTTGTTAACACAAAACAACAAACAACCCCATGTCACTCCCTaGTGCTACAGAGGCACTGGC +
Preference number: 4 (lower is better)
Translates to: CTEERFWRDSLLTQNNKQPHVTP*CYRGTG
Trigger: GCCAGTGCCTCTGTAGCAGCAGGGAGTGACATGGGG...TTGTTTGTTGTTTTGTGTTAACAAACTGTCTCTCCAGAACCTCTCCTCTGTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR GCA 90 bp GATACTGAGAGAAGTTGGCCCACGTACTTCTACTTACGAACCAAACACCACCATGGGTACCAAGGACTCTaGAGTCTCTGTAGCTCTCTC +
Preference number: 4 (lower is better)
Translates to: DTERSWPTYFYLRTKHHHGYQGL*SLCSSL
Trigger: GAGAGAGCTACAGAGACTGCAGAGTCCTTGGTACCC...ATGGTGGTGTTTGGTTCGTAAGTAGAAGTACGTGGGCCAACTTCTCTCAGTATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CCA 90 bp CAGAGCACGTTCTTCCAGAAATGTCCTGTCCCAGCCTTTCGGATGATCCAGGCAACTGGCTATAATGGTTaGCATGTAGAAGGATCTGGT +
Preference number: 4 (lower is better)
Translates to: QSTFFQKCPVPAFRMIQATGYNG*HVEGSG
Trigger: ACCAGATCCTTCTACATGCCAACCATTATAGCCAGT...TGCCTGGATCATCCGAAAGGCTGGGACAGGACATTTCTGGAAGAACGTGCTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CCA 90 bp CTAGCATGTTGCCTTGTGACGGAGAAGGCTGCCGGATCAGAAGAGGAGACAATTTTTGGTTCTAGTCCTTaGACCAGCATGTGGGTTTCT +
Preference number: 4 (lower is better)
Translates to: LACCLVTEKAAGSEEETIFGSSP*TSMWVS
Trigger: AGAAACCCACATGCTGGTCCAAGGACTAGAACCAAA...AATTGTCTCCTCTTCTGATCCGGCAGCCTTCTCCGTCACAAGGCAACATGCTAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR TCA 90 bp CACCCTCACAGGCTGTATGGAAGCAGCACACCATGTAGTAAAAACACACCTGAGCAAGTACCCGAGTGTTaGAGACATCAATGGACTTGT +
Preference number: 4 (lower is better)
Translates to: HPHRLYGSSTPCSKNTPEQVPEC*RHQWTC
Trigger: ACAAGTCCATTGATGTCTTCAACACTCGGGTACTTG...CTCAGGTGTGTTTTTACTACATGGTGTGCTGCTTCCATACAGCCTGTGAGGGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR GCA 90 bp AAGACATCAAGATTTTCACAAAAGGCTTTGGCTCCCTGCTCATTGTCCTTCGAAGGGTCCTCTGTGTCTTaGAGCCACCTCACAGAGATG +
Preference number: 4 (lower is better)
Translates to: KTSRFSQKALAPCSLSFEGSSVS*SHLTEM
Trigger: CATCTCTGTGAGGTGGCTGCAAGACACAGAGGACCC...TTCGAAGGACAATGAGCAGGGAGCCAAAGCCTTTTGTGAAAATCTTGATGTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CCA 90 bp TTAGGCAGTCTTCCCTCCGCTCCAGTGATTTATCTTAGAGTCCAGTCAAGCATCGGAATTCCTTCTGCTTaGCACACAAATCGTGCAGTG +
Preference number: 4 (lower is better)
Translates to: LGSLPSAPVIYLRVQSSIGIPSA*HTNRAV
Trigger: CACTGCACGATTTGTGTGCCAAGCAGAAGGAATTCC...GATGCTTGACTGGACTCTAAGATAAATCACTGGAGCGGAGGGAAGACTGCCTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CCA 90 bp TTAGGCAGTCTTCCCTCCGCTCCAGTGATTTATCTTAGAGTCCAGTCAAGCATCTTACCACAGTCAGTCTaGCTCGAGACAGAACAGATC +
Preference number: 4 (lower is better)
Translates to: LGSLPSAPVIYLRVQSSILPQSV*LETEQI
Trigger: GATCTGTTCTGTCTCGAGCCAGACTGACTGTGGTAA...GATGCTTGACTGGACTCTAAGATAAATCACTGGAGCGGAGGGAAGACTGCCTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CCA 90 bp CTAGCATGTTGCCTTGTGACGGAGAAGGCTGCCGGATCAGAAGAGGAGACAATTGGTAGTACAATTCAGTaGTTCCAAATGCAGTTCAGG +
Preference number: 4 (lower is better)
Translates to: LACCLVTEKAAGSEEETIGSTIQ*FQMQFR
Trigger: CCTGAACTGCATTTGGAACCACTGAATTGTACTACC...AATTGTCTCCTCTTCTGATCCGGCAGCCTTCTCCGTCACAAGGCAACATGCTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR TCA 90 bp GATACTGAGAGAAGTTGGCCCACGTACTTCTACTTACGAACCAAACACCACCATTGGACGCAGATATCTTaGCAATGTACACGTTCCCTG +
Preference number: 4 (lower is better)
Translates to: DTERSWPTYFYLRTKHHHWTQIS*QCTRSL
Trigger: CAGGGAACGTGTACATTGTCAAGATATCTGCGTCCA...ATGGTGGTGTTTGGTTCGTAAGTAGAAGTACGTGGGCCAACTTCTCTCAGTATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR GCA 90 bp CTAATTTGCATGTCAGCTTATTTGGAGTTGAATACGATGAATAATGAAACCTCGTCAGCTGGCAAGGGCTaGGCAGGGTCTCCGTGCTTC +
Preference number: 4 (lower is better)
Translates to: LICMSAYLELNTMNNETSSAGKG*AGSPCF
Trigger: GAAGCACGGAGACCCTGCGCAGCCCTTGCCAGCTGA...CGAGGTTTCATTATTCATCGTATTCAACTCCAAATAAGCTGACATGCAAATTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CCA 90 bp AAGACATCAAGATTTTCACAAAAGGCTTTGGCTCCCTGCTCATTGTCCTTCGAACCTTCTCCGTGTGCCTaGCAATCTAAAACGACTGGG +
Preference number: 4 (lower is better)
Translates to: KTSRFSQKALAPCSLSFEPSPCA*QSKTTG
Trigger: CCCAGTCGTTTTAGATTGCCAGGCACACGGAGAAGG...TTCGAAGGACAATGAGCAGGGAGCCAAAGCCTTTTGTGAAAATCTTGATGTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CCA 90 bp TTAGGCAGTCTTCCCTCCGCTCCAGTGATTTATCTTAGAGTCCAGTCAAGCATCTCAACCAGGACATTTTaGGTGAGGGAATTCCTTCTG +
Preference number: 4 (lower is better)
Translates to: LGSLPSAPVIYLRVQSSISTRTF*VREFLL
Trigger: CAGAAGGAATTCCCTCACCCAAAATGTCCTGGTTGA...GATGCTTGACTGGACTCTAAGATAAATCACTGGAGCGGAGGGAAGACTGCCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CCA 90 bp GATACTGAGAGAAGTTGGCCCACGTACTTCTACTTACGAACCAAACACCACCATGACAGAACAGATCCTTaGCTGTTTTCAGCCATGCAC +
Preference number: 4 (lower is better)
Translates to: DTERSWPTYFYLRTKHHHDRTDP*LFSAMH
Trigger: GTGCATGGCTGAAAACAGCCAAGGATCTGTTCTGTC...ATGGTGGTGTTTGGTTCGTAAGTAGAAGTACGTGGGCCAACTTCTCTCAGTATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CCA 90 bp ACAACAGTAACTGACAGACACATTTTCTTAATATATCTCCTAAGCCCTACTAAGATGGTGGGGTGGCGGTaGTGGAGGGACCATGCGATC +
Preference number: 4 (lower is better)
Translates to: TTVTDRHIFLIYLLSPTKMVGWR*WRDHAI
Trigger: GATCGCATGGTCCCTCCACCACCGCCACCCCACCAT...CTTAGTAGGGCTTAGGAGATATATTAAGAAAATGTGTCTGTCAGTTACTGTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR CAA 72 bp AAATTCTCCTGCTCTGGTGTCCCAAACCCAACAGCTTaGCAAGGACACGATCCCCTATGTACTATGGAATGT +
Preference number: 4 (lower is better)
Translates to: KFSCSGVPNPTA*QGHDPLCTMEC
Trigger: ACATTCCATAGTACATAGGGGATCGTGTCCTTGCAAAGCTGTTGGGTTTGGGACACCAGAGCAGGAGAATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR TCA 90 bp AGGCTGGAGCAAAATTCTCCTGCTCTGGTGTCCCAAACCCAACAGCTTTGCAAGTTTCCAAGGACCACCTaGTATTCCTCGTTATTTAAA +
Preference number: 4 (lower is better)
Translates to: RLEQNSPALVSQTQQLCKFPRTT*YSSLFK
Trigger: TTTAAATAACGAGGAATATCAGGTGGTCCTTGGAAA...CTTGCAAAGCTGTTGGGTTTGGGACACCAGAGCAGGAGAATTTTGCTCCAGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR GCA 90 bp CTAGCATGTTGCCTTGTGACGGAGAAGGCTGCCGGATCAGAAGAGGAGACAATTTGTAGAAAGTATAGTTaGTGTCGGGTTCTAAGTCAT +
Preference number: 4 (lower is better)
Translates to: LACCLVTEKAAGSEEETICRKYS*CRVLSH
Trigger: ATGACTTAGAACCCGACAGCAACTATACTTTCTACA...AATTGTCTCCTCTTCTGATCCGGCAGCCTTCTCCGTCACAAGGCAACATGCTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR GCA 90 bp TGCACAGAGGAGAGGTTCTGGAGAGACAGTTTGTTAACACAAAACAACAAACAATACAGGTCAAGGCTATaGCAACGCCTACTGCGATGC +
Preference number: 4 (lower is better)
Translates to: CTEERFWRDSLLTQNNKQYRSRL*QRLLRC
Trigger: GCATCGCAGTAGGCGTTGGCATAGCCTTGACCTGTA...TTGTTTGTTGTTTTGTGTTAACAAACTGTCTCTCCAGAACCTCTCCTCTGTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CCA 90 bp CACCCTCACAGGCTGTATGGAAGCAGCACACCATGTAGTAAAAACACACCTGAGGACTGTTGCATCCTGTaGTTCTTTCATGAAAAACAG +
Preference number: 4 (lower is better)
Translates to: HPHRLYGSSTPCSKNTPEDCCIL*FFHEKQ
Trigger: CTGTTTTTCATGAAAGAACCACAGGATGCAACAGTC...CTCAGGTGTGTTTTTACTACATGGTGTGCTGCTTCCATACAGCCTGTGAGGGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CCA 90 bp AAGACATCAAGATTTTCACAAAAGGCTTTGGCTCCCTGCTCATTGTCCTTCGAAGCCTGTGGGTGCTTCTaGCAATGTAGAATGGTAGAC +
Preference number: 4 (lower is better)
Translates to: KTSRFSQKALAPCSLSFEACGCF*QCRMVD
Trigger: GTCTACCATTCTACATTGCCAGAAGCACCCACAGGC...TTCGAAGGACAATGAGCAGGGAGCCAAAGCCTTTTGTGAAAATCTTGATGTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR CAA 72 bp GGAGAAGGCTGCCGGATCAGAAGAGGAGACAATTTGTaGATTTTAAACCAGAGAATGAACTCGCTTCTGGAG +
Preference number: 4 (lower is better)
Translates to: GEGCRIRRGDNL*ILNQRMNSLLE
Trigger: CTCCAGAAGCGAGTTCATTCTCTGGTTTAAAATCAACAAATTGTCTCCTCTTCTGATCCGGCAGCCTTCTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR CAA 72 bp GACGGAGAAGGCTGCCGGATCAGAAGAGGAGACAATTaGTTGATTTTAAACCAGAGAATGAACTCGCTTCTG +
Preference number: 4 (lower is better)
Translates to: DGEGCRIRRGDN*LILNQRMNSLL
Trigger: CAGAAGCGAGTTCATTCTCTGGTTTAAAATCAACAAATTGTCTCCTCTTCTGATCCGGCAGCCTTCTCCGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR CAA 72 bp CATGGCCTTAAACCTGCTTTCCCCTTTTCGATCTGTTaGCTTCTGACTTGTGATCCCATTGTGCCCTTCATT +
Preference number: 4 (lower is better)
Translates to: HGLKPAFPFSIC*LLTCDPIVPFI
Trigger: AATGAAGGGCACAATGGGATCACAAGTCAGAAGCAAACAGATCGAAAAGGGGAAAGCAGGTTTAAGGCCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR CAA 72 bp TCTGTGTTCAGGCTTATCTGCAGGAAGGGTTTTAGTTaGGGAATGGACCAGATACTACAGGACAGGGCAAAT +
Preference number: 4 (lower is better)
Translates to: SVFRLICRKGFS*GMDQILQDRAN
Trigger: ATTTGCCCTGTCCTGTAGTATCTGGTCCATTCCCAAACTAAAACCCTTCCTGCAGATAAGCCTGAACACAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR TCA 90 bp TGCACAGAGGAGAGGTTCTGGAGAGACAGTTTGTTAACACAAAACAACAAACAACCAGGACATTTTGGGTaGGGGAATTCCTTCTGCTTG +
Preference number: 4 (lower is better)
Translates to: CTEERFWRDSLLTQNNKQPGHFG*GNSFCL
Trigger: CAAGCAGAAGGAATTCCCTCACCCAAAATGTCCTGG...TTGTTTGTTGTTTTGTGTTAACAAACTGTCTCTCCAGAACCTCTCCTCTGTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR TCA 90 bp ACAACAGTAACTGACAGACACATTTTCTTAATATATCTCCTAAGCCCTACTAAGCAGCTCCACGGAGTTTaGAAAGGGCCCTTCTCCCAC +
Preference number: 4 (lower is better)
Translates to: TTVTDRHIFLIYLLSPTKQLHGV*KGPFSH
Trigger: GTGGGAGAAGGGCCCTTTTCAAACTCCGTGGAGCTG...CTTAGTAGGGCTTAGGAGATATATTAAGAAAATGTGTCTGTCAGTTACTGTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR GCA 90 bp TTAGGCAGTCTTCCCTCCGCTCCAGTGATTTATCTTAGAGTCCAGTCAAGCATCTTTCCTTGTGACTGTTaGATCCTGTGGTTCTTTCAT +
Preference number: 4 (lower is better)
Translates to: LGSLPSAPVIYLRVQSSIFPCDC*ILWFFH
Trigger: ATGAAAGAACCACAGGATGCAACAGTCACAAGGAAA...GATGCTTGACTGGACTCTAAGATAAATCACTGGAGCGGAGGGAAGACTGCCTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CCA 90 bp TGCACAGAGGAGAGGTTCTGGAGAGACAGTTTGTTAACACAAAACAACAAACAAGCAACTCCTCCTTCATaGACCTCAGTAGACACTGGA +
Preference number: 4 (lower is better)
Translates to: CTEERFWRDSLLTQNNKQATPPS*TSVDTG
Trigger: TCCAGTGTCTACTGAGGTCCATGAAGGAGGAGTTGC...TTGTTTGTTGTTTTGTGTTAACAAACTGTCTCTCCAGAACCTCTCCTCTGTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CCA 90 bp CTAATTTGCATGTCAGCTTATTTGGAGTTGAATACGATGAATAATGAAACCTCGGTGTGCCTGGGGTGGTaGCCCGACAAACATACACTC +
Preference number: 4 (lower is better)
Translates to: LICMSAYLELNTMNNETSVCLGW*PDKHTL
Trigger: GAGTGTATGTTTGTCGGGCCACCACCCCAGGCACAC...CGAGGTTTCATTATTCATCGTATTCAACTCCAAATAAGCTGACATGCAAATTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR TCA 90 bp ACAACAGTAACTGACAGACACATTTTCTTAATATATCTCCTAAGCCCTACTAAGGACGGCTCCAGGAAATaGTGGGTCTGGGATATCCTG +
Preference number: 4 (lower is better)
Translates to: TTVTDRHIFLIYLLSPTKDGSRK*WVWDIL
Trigger: CAGGATATCCCAGACCCATCATTTCCTGGAGCCGTC...CTTAGTAGGGCTTAGGAGATATATTAAGAAAATGTGTCTGTCAGTTACTGTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR TCA 90 bp TGCACAGAGGAGAGGTTCTGGAGAGACAGTTTGTTAACACAAAACAACAAACAACAGCATGTGGGTTTCTaGTGTTTGCAGGTAGAGAAC +
Preference number: 4 (lower is better)
Translates to: CTEERFWRDSLLTQNNKQQHVGF*CLQVEN
Trigger: GTTCTCTACCTGCAAACATCAGAAACCCACATGCTG...TTGTTTGTTGTTTTGTGTTAACAAACTGTCTCTCCAGAACCTCTCCTCTGTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CCA 90 bp AAGACATCAAGATTTTCACAAAAGGCTTTGGCTCCCTGCTCATTGTCCTTCGAATCATCATTGGACTCATaGGAAAACCTTCCGGAATCC +
Preference number: 4 (lower is better)
Translates to: KTSRFSQKALAPCSLSFESSLDS*ENLPES
Trigger: GGATTCCGGAAGGTTTTCCCATGAGTCCAATGATGA...TTCGAAGGACAATGAGCAGGGAGCCAAAGCCTTTTGTGAAAATCTTGATGTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR GCA 90 bp ACAACAGTAACTGACAGACACATTTTCTTAATATATCTCCTAAGCCCTACTAAGAATCCTTCATCCGATTaGTCTCCCCTCCTGCCTTCC +
Preference number: 4 (lower is better)
Translates to: TTVTDRHIFLIYLLSPTKNPSSD*SPLLPS
Trigger: GGAAGGCAGGAGGGGAGAGCAATCGGATGAAGGATT...CTTAGTAGGGCTTAGGAGATATATTAAGAAAATGTGTCTGTCAGTTACTGTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CCA 90 bp AAGACATCAAGATTTTCACAAAAGGCTTTGGCTCCCTGCTCATTGTCCTTCGAATCAGTAGACACTGGATaGACTTCAAACGCAGAGATA +
Preference number: 4 (lower is better)
Translates to: KTSRFSQKALAPCSLSFESVDTG*TSNAEI
Trigger: TATCTCTGCGTTTGAAGTCCATCCAGTGTCTACTGA...TTCGAAGGACAATGAGCAGGGAGCCAAAGCCTTTTGTGAAAATCTTGATGTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR CAA 72 bp ATAAACAGTAAGACATCAAGATTTTCACAAAAGGCTTaGGCTCCCTGCTCATTGTCCTTCGAACAGGTGCTT +
Preference number: 4 (lower is better)
Translates to: INSKTSRFSQKA*APCSLSFEQVL
Trigger: AAGCACCTGTTCGAAGGACAATGAGCAGGGAGCCAAAGCCTTTTGTGAAAATCTTGATGTCTTACTGTTTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR TCA 90 bp CTAATTTGCATGTCAGCTTATTTGGAGTTGAATACGATGAATAATGAAACCTCGCTGGGTCTTTCCTTGTaGCTGTTGCATCCTGTGGTT +
Preference number: 4 (lower is better)
Translates to: LICMSAYLELNTMNNETSLGLSL*LLHPVV
Trigger: AACCACAGGATGCAACAGTCACAAGGAAAGACCCAG...CGAGGTTTCATTATTCATCGTATTCAACTCCAAATAAGCTGACATGCAAATTAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR TCA 90 bp AAGACATCAAGATTTTCACAAAAGGCTTTGGCTCCCTGCTCATTGTCCTTCGAAGTTCTAAGTCATCAATaGTGTAATGAGTCGTGTCGT +
Preference number: 4 (lower is better)
Translates to: KTSRFSQKALAPCSLSFEVLSHQ*CNESCR
Trigger: ACGACACGACTCATTACATCATTGATGACTTAGAAC...TTCGAAGGACAATGAGCAGGGAGCCAAAGCCTTTTGTGAAAATCTTGATGTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR TCA 90 bp AAGACATCAAGATTTTCACAAAAGGCTTTGGCTCCCTGCTCATTGTCCTTCGAATTTAATCCTGCCATTTaGATGTATCCTTCTCCCATT +
Preference number: 4 (lower is better)
Translates to: KTSRFSQKALAPCSLSFEFNPAI*MYPSPI
Trigger: AATGGGAGAAGGATACATTCAAATGGCAGGATTAAA...TTCGAAGGACAATGAGCAGGGAGCCAAAGCCTTTTGTGAAAATCTTGATGTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CCA 90 bp AAGAAAATCTTGCAAAATACATGGTTGCTTCAGGTACCAGCTCTTTACAATACACCGTTAGATAGAACCTaGATCCGTTTATTTTCGGAC +
Preference number: 4 (lower is better)
Translates to: KKILQNTWLLQVPALYNTPLDRT*IRLFSD
Trigger: GTCCGAAAATAAACGGATCCAGGTTCTATCTAACGG...TGTATTGTAAAGAGCTGGTACCTGAAGCAACCATGTATTTTGCAAGATTTTCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR TCA 90 bp CTAATTTGCATGTCAGCTTATTTGGAGTTGAATACGATGAATAATGAAACCTCGATGCTTTTCCTCTTATaGGCTATAGTAGCTGCAACA +
Preference number: 4 (lower is better)
Translates to: LICMSAYLELNTMNNETSMLFLL*AIVAAT
Trigger: TGTTGCAGCTACTATAGCTCATAAGAGGAAAAGCAT...CGAGGTTTCATTATTCATCGTATTCAACTCCAAATAAGCTGACATGCAAATTAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CCA 90 bp AAGAAAATCTTGCAAAATACATGGTTGCTTCAGGTACCAGCTCTTTACAATACAAATAAACTTTGGCATTaGAAGAATCCAAACGCTTGG +
Preference number: 4 (lower is better)
Translates to: KKILQNTWLLQVPALYNTNKLWH*KNPNAW
Trigger: CCAAGCGTTTGGATTCTTCCAATGCCAAAGTTTATT...TGTATTGTAAAGAGCTGGTACCTGAAGCAACCATGTATTTTGCAAGATTTTCTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
3UTR CAA 72 bp AAACAGTTTCTAATTTGCATGTCAGCTTATTTGGAGTaGAATACGATGAATAATGAAACCTCGAGGAAGACA +
Preference number: 4 (lower is better)
Translates to: KQFLICMSAYLE*NTMNNETSRKT
Trigger: TGTCTTCCTCGAGGTTTCATTATTCATCGTATTCAACTCCAAATAAGCTGACATGCAAATTAGAAACTGTTT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 90 bp GGCGGAAGGACAGGCGGTACAGCACCACTTGGCCCCGCCGGTACTTaGCCGGGATTGGCAGCCAGGAGACGAGAATGTCGGTGGGACTTC +
Preference number: 5 (lower is better)
Translates to: GGRTGGTAPLGPAGT*PGLAARRRECRWDF
Trigger: GAAGTCCCACCGACATTCTCGTCTCCTGGCTGCCAATCCCGGCCAAGTACCGGCGGGGCCAAGTGGTGCTGTACCGCCTGTCCTTCCGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 90 bp GCGTTCTCAGTGCTCAGGCGGAAGGACAGGCGGTACAGCACCACTTaGCCCCGCCGGTACTTGGCCGGGATTGGCAGCCAGGAGACGAGA +
Preference number: 5 (lower is better)
Translates to: AFSVLRRKDRRYSTT*PRRYLAGIGSQETR
Trigger: TCTCGTCTCCTGGCTGCCAATCCCGGCCAAGTACCGGCGGGGCCAAGTGGTGCTGTACCGCCTGTCCTTCCGCCTGAGCACTGAGAACGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS TCA 90 bp AGGAGACTTCGGGGCTTTCACGCTCGTAGCCTTGGGCGTCCTGTGTaGGGTCCACACCGACGACTCTCCCAGCCCCACACGGGTAGCTGC +
Preference number: 5 (lower is better)
Translates to: RRLRGFHARSLGRPV*GPHRRLSQPHTGSC
Trigger: GCAGCTACCCGTGTGGGGCTGGGAGAGTCGTCGGTGTGGACCTCACACAGGACGCCCAAGGCTACGAGCGTGAAAGCCCCGAAGTCTCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS GCA 90 bp CGTGCACGGTCCCCGGGAGTTCTACAACTTGGATGGCGTTCTCAGTaGTCAGGCGGAAGGACAGGCGGTACAGCACCACTTGGCCCCGCC +
Preference number: 5 (lower is better)
Translates to: RARSPGVLQLGWRSQ*SGGRTGGTAPLGPA
Trigger: GGCGGGGCCAAGTGGTGCTGTACCGCCTGTCCTTCCGCCTGAGCACTGAGAACGCCATCCAAGTTGTAGAACTCCCGGGGACCGTGCACG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS GCA 90 bp TCGGCAGCATATCGCAGCCCCGCAGATGTCTGCGGAGCTGAGGTCTaGTCAGCTGGCAAGGGCTGCGCAGGGTCTCCGTGCTTCTTCGGT +
Preference number: 5 (lower is better)
Translates to: SAAYRSPADVCGAEV*SAGKGCAGSPCFFG
Trigger: ACCGAAGAAGCACGGAGACCCTGCGCAGCCCTTGCCAGCTGAGCAGACCTCAGCTCCGCAGACATCTGCGGGGCTGCGATATGCTGCCGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS TCA 90 bp AAAACCCTCGGCAGCATATCGCAGCCCCGCAGATGTCTGCGGAGCTaGGGTCTGCTCAGCTGGCAAGGGCTGCGCAGGGTCTCCGTGCTT +
Preference number: 5 (lower is better)
Translates to: KTLGSISQPRRCLRS*GLLSWQGLRRVSVL
Trigger: AAGCACGGAGACCCTGCGCAGCCCTTGCCAGCTGAGCAGACCTCAGCTCCGCAGACATCTGCGGGGCTGCGATATGCTGCCGAGGGTTTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS GCA 90 bp CTGCTCAGCTGGCAAGGGCTGCGCAGGGTCTCCGTGCTTCTTCGGTaGAGCATCCCCATCAGAATCGCCACCAGCGAGGGGATTCGAGGT +
Preference number: 5 (lower is better)
Translates to: LLSWQGLRRVSVLLR*SIPIRIATSEGIRG
Trigger: ACCTCGAATCCCCTCGCTGGTGGCGATTCTGATGGGGATGCTGCACCGAAGAAGCACGGAGACCCTGCGCAGCCCTTGCCAGCTGAGCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 90 bp CAGGCGGTACAGCACCACTTGGCCCCGCCGGTACTTGGCCGGGATTaGCAGCCAGGAGACGAGAATGTCGGTGGGACTTCGACTCGTCAA +
Preference number: 5 (lower is better)
Translates to: QAVQHHLAPPVLGRD*QPGDENVGGTSTRQ
Trigger: TTGACGAGTCGAAGTCCCACCGACATTCTCGTCTCCTGGCTGCCAATCCCGGCCAAGTACCGGCGGGGCCAAGTGGTGCTGTACCGCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 90 bp AGAGGAGGTATTCGCCTTCGCGTAGAGATGGTGGGGTGGCGGTGGTaGAGGGACCATGCGATCACGGACGGACACGCATCCGGGAGTGCT +
Preference number: 5 (lower is better)
Translates to: RGGIRLRVEMVGWRW*RDHAITDGHASGSA
Trigger: AGCACTCCCGGATGCGTGTCCGTCCGTGATCGCATGGTCCCTCCACCACCGCCACCCCACCATCTCTACGCGAAGGCGAATACCTCCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 90 bp GGAAGAGGAGGTATTCGCCTTCGCGTAGAGATGGTGGGGTGGCGGTaGTGGAGGGACCATGCGATCACGGACGGACACGCATCCGGGAGT +
Preference number: 5 (lower is better)
Translates to: GRGGIRLRVEMVGWR*WRDHAITDGHASGS
Trigger: ACTCCCGGATGCGTGTCCGTCCGTGATCGCATGGTCCCTCCACCACCGCCACCCCACCATCTCTACGCGAAGGCGAATACCTCCTCTTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 90 bp CCAGAAGGTACTCGTGCACGGTCCCCGGGAGTTCTACAACTTGGATaGCGTTCTCAGTGCTCAGGCGGAAGGACAGGCGGTACAGCACCA +
Preference number: 5 (lower is better)
Translates to: PEGTRARSPGVLQLG*RSQCSGGRTGGTAP
Trigger: TGGTGCTGTACCGCCTGTCCTTCCGCCTGAGCACTGAGAACGCCATCCAAGTTGTAGAACTCCCGGGGACCGTGCACGAGTACCTTCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 90 bp CCTTCCAGAAGGTACTCGTGCACGGTCCCCGGGAGTTCTACAACTTaGATGGCGTTCTCAGTGCTCAGGCGGAAGGACAGGCGGTACAGC +
Preference number: 5 (lower is better)
Translates to: PSRRYSCTVPGSSTT*MAFSVLRRKDRRYS
Trigger: GCTGTACCGCCTGTCCTTCCGCCTGAGCACTGAGAACGCCATCCAAGTTGTAGAACTCCCGGGGACCGTGCACGAGTACCTTCTGGAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 90 bp CCCCACACGGGTAGCTGCAGTAATCCGAACCAGATAGACACTGTCTaGCTTCAGGCCTTCCAGAAGGTACTCGTGCACGGTCCCCGGGAG +
Preference number: 5 (lower is better)
Translates to: PHTGSCSNPNQIDTV*LQAFQKVLVHGPRE
Trigger: CTCCCGGGGACCGTGCACGAGTACCTTCTGGAAGGCCTGAAGCCAGACAGTGTCTATCTGGTTCGGATTACTGCAGCTACCCGTGTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS TCA 90 bp ATTCCCAGCATCCTCCGGGCCAACGTCGTAGATCTGCAACACTCCTaGTGGCAGGGCAGTCACCCTGTCCATGGTTGTAGGCAGGGCTGT +
Preference number: 5 (lower is better)
Translates to: IPSILRANVVDLQHS*WQGSHPVHGCRQGC
Trigger: ACAGCCCTGCCTACAACCATGGACAGGGTGACTGCCCTGCCATCAGGAGTGTTGCAGATCTACGACGTTGGCCCGGAGGATGCTGGGAAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS TCA 90 bp GTGGAGGGACCATGCGATCACGGACGGACACGCATCCGGGAGTGCTaGCAGTCTGGTCGGCCTGGTAGCCTTCTTCCATGTTGTTGTAAG +
Preference number: 5 (lower is better)
Translates to: VEGPCDHGRTRIREC*QSGRPGSLLPCCCK
Trigger: CTTACAACAACATGGAAGAAGGCTACCAGGCCGACCAGACTGTCAGCACTCCCGGATGCGTGTCCGTCCGTGATCGCATGGTCCCTCCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 90 bp CCTGCCACTCTCCCGCAATCCAGGCCTTCCTGGAAGCATACAAGATaGTGTAGCGTGTCACCACTGTCTCTGGGCCATCTGGGGGTTTCC +
Preference number: 5 (lower is better)
Translates to: PATLPQSRPSWKHTR*CSVSPLSLGHLGVS
Trigger: GGAAACCCCCAGATGGCCCAGAGACAGTGGTGACACGCTACACCATCTTGTATGCTTCCAGGAAGGCCTGGATTGCGGGAGAGTGGCAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS TCA 90 bp TCGGGAGGTCTTAGGGGCACATCTTCTAGCGTGTTCTGTGTCACATaGTCCGACATCTGGCTGGCCCCCAGCGGCATGTACGCCACAATG +
Preference number: 5 (lower is better)
Translates to: SGGLRGTSSSVFCVT*SDIWLAPSGMYATM
Trigger: CATTGTGGCGTACATGCCGCTGGGGGCCAGCCAGATGTCGGATCATGTGACACAGAACACGCTAGAAGATGTGCCCCTAAGACCTCCCGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 90 bp AGGTTCTTCCCCATGTCACTCCCTGCTGCTACAGAGGCACTGGCTTaGGATAACGGCTGGGTTCCACTCTGCGCTGTCTTAGAGGCGGAT +
Preference number: 5 (lower is better)
Translates to: RFFPMSLPAATEALA*DNGWVPLCAVLEAD
Trigger: ATCCGCCTCTAAGACAGCGCAGAGTGGAACCCAGCCGTTATCCCAAGCCAGTGCCTCTGTAGCAGCAGGGAGTGACATGGGGAAGAACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 90 bp CTTCTCGGTGAAGAACCTGCCACTCTCCCGCAATCCAGGCCTTCCTaGAAGCATACAAGATGGTGTAGCGTGTCACCACTGTCTCTGGGC +
Preference number: 5 (lower is better)
Translates to: LLGEEPATLPQSRPS*KHTRWCSVSPLSLG
Trigger: GCCCAGAGACAGTGGTGACACGCTACACCATCTTGTATGCTTCCAGGAAGGCCTGGATTGCGGGAGAGTGGCAGGTTCTTCACCGAGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 90 bp AAGAATCCAAACGCTTGGGCCTCTGGTTCGACTCTGAAGCATCCTTaGGGAGGACGGCCAGCTCCACGGAGTTTGAAAAGGGCCCTTCTC +
Preference number: 5 (lower is better)
Translates to: KNPNAWASGSTLKHP*GGRPAPRSLKRALL
Trigger: GAGAAGGGCCCTTTTCAAACTCCGTGGAGCTGGCCGTCCTCCCCAAGGATGCTTCAGAGTCGAACCAGAGGCCCAAGCGTTTGGATTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CAA 90 bp GGGGTTCCCACAATACAGACAAGCCTGATGCTCTCTCTGCCGACCTATCACCCTCGGGTCCTCTGTGTCTaGCAGCCACCTCACAGAGAT +
Preference number: 5 (lower is better)
Translates to: GVPTIQTSLMLSLPTYHPRVLCV*QPPHRD
Trigger: ATCTCTGTGAGGTGGCTGCAAGACACAGAGGACCCG...AGGGTGATAGGTCGGCAGAGAGAGCATCAGGCTTGTCTGTATTGTGGGAACCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS GCA 90 bp CTTCGCGTCAATGAAGCTGCTGGGCATCATGGGTACCAAGGACTCTaGAGTCTCTGTAGCTCTCTCCAGGTTCTTCCCCATGTCACTCCC +
Preference number: 5 (lower is better)
Translates to: LRVNEAAGHHGYQGL*SLCSSLQVLPHVTP
Trigger: GGGAGTGACATGGGGAAGAACCTGGAGAGAGCTACAGAGACTGCAGAGTCCTTGGTACCCATGATGCCCAGCAGCTTCATTGACGCGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CAA 90 bp GATACTGAGAGAAGTTGGCCCACGTACTTCTACTTACGAACCAAACACCACCATGCGGTACAGCACCACTaGGCCCCGCCGGTACTTGGC +
Preference number: 5 (lower is better)
Translates to: DTERSWPTYFYLRTKHHHAVQHH*APPVLG
Trigger: GCCAAGTACCGGCGGGGCCAAGTGGTGCTGTACCGC...ATGGTGGTGTTTGGTTCGTAAGTAGAAGTACGTGGGCCAACTTCTCTCAGTATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CAA 90 bp AGGCTGGAGCAAAATTCTCCTGCTCTGGTGTCCCAAACCCAACAGCTTTGCAAGCCAGCTCCACGGAGTTaGAAAAGGGCCCTTCTCCCA +
Preference number: 5 (lower is better)
Translates to: RLEQNSPALVSQTQQLCKPAPRS*KRALLP
Trigger: TGGGAGAAGGGCCCTTTTCAAACTCCGTGGAGCTGG...CTTGCAAAGCTGTTGGGTTTGGGACACCAGAGCAGGAGAATTTTGCTCCAGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS GCA 90 bp TGCAGCCACCTCACAGAGATGGTAGTACAATTCAGTGGTTCCAAATaGAGTTCAGGAGACTTCGGGGCTTTCACGCTCGTAGCCTTGGGC +
Preference number: 5 (lower is better)
Translates to: CSHLTEMVVQFSGSK*SSGDFGAFTLVALG
Trigger: GCCCAAGGCTACGAGCGTGAAAGCCCCGAAGTCTCCTGAACTGCATTTGGAACCACTGAATTGTACTACCATCTCTGTGAGGTGGCTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS GCA 90 bp TCCCACCTCGTTGGACGCAGATATCTTGACAATGTACACGTTCCCTaGCACCAGGTTTTCCAGCAAAGCCATGGTGATTGCCCCTTCTCG +
Preference number: 5 (lower is better)
Translates to: SHLVGRRYLDNVHVP*HQVFQQSHGDCPFS
Trigger: CGAGAAGGGGCAATCACCATGGCTTTGCTGGAAAACCTGGTGGCAGGGAACGTGTACATTGTCAAGATATCTGCGTCCAACGAGGTGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 90 bp GTGCTGCTGATGACGGAGGACAGGTGTATCTCATCATTGGACTCATaGGAAAACCTTCCGGAATCCCCTGTCTCATGGCTGCCTTCACTG +
Preference number: 5 (lower is better)
Translates to: VLLMTEDRCISSLDS*ENLPESPVSWLPSL
Trigger: CAGTGAAGGCAGCCATGAGACAGGGGATTCCGGAAGGTTTTCCCATGAGTCCAATGATGAGATACACCTGTCCTCCGTCATCAGCAGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS GCA 90 bp CGTGTGCCTGGGGTGGTGGCCCGACAAACATACACTCCAGCATGCTaGAGCTTGACATCTGATATAATGAGGTTGCCATTTCCAAGTACC +
Preference number: 5 (lower is better)
Translates to: RVPGVVARQTYTPAC*SLTSDIMRLPFPST
Trigger: GGTACTTGGAAATGGCAACCTCATTATATCAGATGTCAAGCTGCAGCATGCTGGAGTGTATGTTTGTCGGGCCACCACCCCAGGCACACG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 90 bp GCACATCTTCTAGCGTGTTCTGTGTCACATGATCCGACATCTGGCTaGCCCCCAGCGGCATGTACGCCACAATGTAGAAAGTATAGTTGC +
Preference number: 5 (lower is better)
Translates to: AHLLACSVSHDPTSG*PPAACTPQCRKYSC
Trigger: GCAACTATACTTTCTACATTGTGGCGTACATGCCGCTGGGGGCCAGCCAGATGTCGGATCATGTGACACAGAACACGCTAGAAGATGTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 90 bp GGTAATAGCCGGAATAAACTTTGGCATTGGAAGAATCCAAACGCTTaGGCCTCTGGTTCGACTCTGAAGCATCCTTGGGGAGGACGGCCA +
Preference number: 5 (lower is better)
Translates to: GNSRNKLWHWKNPNA*ASGSTLKHPWGGRP
Trigger: TGGCCGTCCTCCCCAAGGATGCTTCAGAGTCGAACCAGAGGCCCAAGCGTTTGGATTCTTCCAATGCCAAAGTTTATTCCGGCTATTACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 90 bp TGTAAGGAGCGCTGGGTCTATCTTCCGACATTACCACAGTCAGTCTaGCTCGAGACAGAACAGATCCTTGGCTGTTTTCAGCCATGCACT +
Preference number: 5 (lower is better)
Translates to: CKERWVYLPTLPQSV*LETEQILGCFQPCT
Trigger: AGTGCATGGCTGAAAACAGCCAAGGATCTGTTCTGTCTCGAGCCAGACTGACTGTGGTAATGTCGGAAGATAGACCCAGCGCTCCTTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 90 bp CTCTGTGTCTTGCAGCCACCTCACAGAGATGGTAGTACAATTCAGTaGTTCCAAATGCAGTTCAGGAGACTTCGGGGCTTTCACGCTCGT +
Preference number: 5 (lower is better)
Translates to: LCVLQPPHRDGSTIQ*FQMQFRRLRGFHAR
Trigger: ACGAGCGTGAAAGCCCCGAAGTCTCCTGAACTGCATTTGGAACCACTGAATTGTACTACCATCTCTGTGAGGTGGCTGCAAGACACAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CAA 90 bp AGGCTGGAGCAAAATTCTCCTGCTCTGGTGTCCCAAACCCAACAGCTTTGCAAGTGCCAGCTCGTGGCCTaGTTAAACTTTCAGGCCATT +
Preference number: 5 (lower is better)
Translates to: RLEQNSPALVSQTQQLCKCQLVA*LNFQAI
Trigger: AATGGCCTGAAAGTTTAACAAGGCCACGAGCTGGCA...CTTGCAAAGCTGTTGGGTTTGGGACACCAGAGCAGGAGAATTTTGCTCCAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS TCA 90 bp ACCTTCCGCCTTCATGTAGTGTACAGAGTAGGCGATGACCTTGTCTaGATTGTACAGTGGTCTCTCCCAAGCCAGAAGGATAGCAGAGCT +
Preference number: 5 (lower is better)
Translates to: TFRLHVVYRVGDDLV*IVQWSLPSQKDSRA
Trigger: AGCTCTGCTATCCTTCTGGCTTGGGAGAGACCACTGTACAATTCAGACAAGGTCATCGCCTACTCTGTACACTACATGAAGGCGGAAGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS GCA 90 bp TTACGTGTGCCTGGGGTGGTGGCCCGACAAACATACACTCCAGCATaGTGCAGCTTGACATCTGATATAATGAGGTTGCCATTTCCAAGT +
Preference number: 5 (lower is better)
Translates to: LRVPGVVARQTYTPA*CSLTSDIMRLPFPS
Trigger: ACTTGGAAATGGCAACCTCATTATATCAGATGTCAAGCTGCAGCATGCTGGAGTGTATGTTTGTCGGGCCACCACCCCAGGCACACGTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CAA 90 bp GTCTGTGCATGGAGGGACGGTTTCAAGGGAAAACCCACGGAGGGCTTTTCTTTTCCAAGTACCCGAGTGTaGAAGACATCAATGGACTTG +
Preference number: 5 (lower is better)
Translates to: VCAWRDGFKGKPTEGFSFPSTRV*KTSMDL
Trigger: CAAGTCCATTGATGTCTTCAACACTCGGGTACTTGG...AAAAGAAAAGCCCTCCGTGGGTTTTCCCTTGAAACCGTCCCTCCATGCACAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CAA 90 bp ACAACAGTAACTGACAGACACATTTTCTTAATATATCTCCTAAGCCCTACTAAGTGGCCCCGCCGGTACTaGGCCGGGATTGGCAGCCAG +
Preference number: 5 (lower is better)
Translates to: TTVTDRHIFLIYLLSPTKWPRRY*AGIGSQ
Trigger: CTGGCTGCCAATCCCGGCCAAGTACCGGCGGGGCCA...CTTAGTAGGGCTTAGGAGATATATTAAGAAAATGTGTCTGTCAGTTACTGTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CAA 90 bp CAGAGCACGTTCTTCCAGAAATGTCCTGTCCCAGCCTTTCGGATGATCCAGGCATTGGACGCAGATATCTaGACAATGTACACGTTCCCT +
Preference number: 5 (lower is better)
Translates to: QSTFFQKCPVPAFRMIQALDADI*TMYTFP
Trigger: AGGGAACGTGTACATTGTCAAGATATCTGCGTCCAA...TGCCTGGATCATCCGAAAGGCTGGGACAGGACATTTCTGGAAGAACGTGCTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CAA 90 bp TTAGGCAGTCTTCCCTCCGCTCCAGTGATTTATCTTAGAGTCCAGTCAAGCATCCTGCGATGCCCGTCATaGACTTTTGGTCCAGATGGT +
Preference number: 5 (lower is better)
Translates to: LGSLPSAPVIYLRVQSSILRCPS*TFGPDG
Trigger: ACCATCTGGACCAAAAGTCAATGACGGGCATCGCAG...GATGCTTGACTGGACTCTAAGATAAATCACTGGAGCGGAGGGAAGACTGCCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS TCA 90 bp GGTGGCCCGACAAACATACACTCCAGCATGCTGCAGCTTGACATCTaGTATAATGAGGTTGCCATTTCCAAGTACCCGAGTGTTGAAGAC +
Preference number: 5 (lower is better)
Translates to: GGPTNIHSSMLQLDI*YNEVAISKYPSVED
Trigger: GTCTTCAACACTCGGGTACTTGGAAATGGCAACCTCATTATATCAGATGTCAAGCTGCAGCATGCTGGAGTGTATGTTTGTCGGGCCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS GCA 90 bp TTTTGGGTGAGGGAATTCCTTCTGCTTGGCACACAAATCGTGCAGTaGCAGCTCGTGGCCTTGTTAAACTTTCAGGCCATTCGACAAATG +
Preference number: 5 (lower is better)
Translates to: FWVREFLLLGTQIVQ*QLVALLNFQAIRQM
Trigger: CATTTGTCGAATGGCCTGAAAGTTTAACAAGGCCACGAGCTGGCACTGCACGATTTGTGTGCCAAGCAGAAGGAATTCCCTCACCCAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS TCA 90 bp TTGCCATTTCCAAGTACCCGAGTGTTGAAGACATCAATGGACTTGTaGTCAAGACGGCTCCAGGAAATGATGGGTCTGGGATATCCTGTG +
Preference number: 5 (lower is better)
Translates to: LPFPSTRVLKTSMDL*SRRLQEMMGLGYPV
Trigger: CACAGGATATCCCAGACCCATCATTTCCTGGAGCCGTCTTGATCACAAGTCCATTGATGTCTTCAACACTCGGGTACTTGGAAATGGCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS TCA 90 bp GATACAGGTCAAGGCTATGCCAACGCCTACTGCGATGCCCGTCATTaGCTTTTGGTCCAGATGGTAATAGCCGGAATAAACTTTGGCATT +
Preference number: 5 (lower is better)
Translates to: DTGQGYANAYCDARH*LLVQMVIAGINFGI
Trigger: AATGCCAAAGTTTATTCCGGCTATTACCATCTGGACCAAAAGTCAATGACGGGCATCGCAGTAGGCGTTGGCATAGCCTTGACCTGTATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 90 bp CCATTTTTCAACCAGGACATTTTGGGTGAGGGAATTCCTTCTGCTTaGCACACAAATCGTGCAGTGCCAGCTCGTGGCCTTGTTAAACTT +
Preference number: 5 (lower is better)
Translates to: PFFNQDILGEGIPSA*HTNRAVPARGLVKL
Trigger: AAGTTTAACAAGGCCACGAGCTGGCACTGCACGATTTGTGTGCCAAGCAGAAGGAATTCCCTCACCCAAAATGTCCTGGTTGAAAAATGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CAA 90 bp CTAGCATGTTGCCTTGTGACGGAGAAGGCTGCCGGATCAGAAGAGGAGACAATTTCTGATATAATGAGGTaGCCATTTCCAAGTACCCGA +
Preference number: 5 (lower is better)
Translates to: LACCLVTEKAAGSEEETISDIMR*PFPSTR
Trigger: TCGGGTACTTGGAAATGGCAACCTCATTATATCAGA...AATTGTCTCCTCTTCTGATCCGGCAGCCTTCTCCGTCACAAGGCAACATGCTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS TCA 90 bp ATGGGTCTGGGATATCCTGTGGCCATACACTCTAGCACAACTGTCTaGTGTAGAGATGCGGTTACATTCTGTGGACTGGCTATAATGGTT +
Preference number: 5 (lower is better)
Translates to: MGLGYPVAIHSSTTV*CRDAVTFCGLAIMV
Trigger: AACCATTATAGCCAGTCCACAGAATGTAACCGCATCTCTACATCAGACAGTTGTGCTAGAGTGTATGGCCACAGGATATCCCAGACCCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS TCA 90 bp CGTTATTTAAACCTTCCGCCTTCATGTAGTGTACAGAGTAGGCGATaGCCTTGTCTGAATTGTACAGTGGTCTCTCCCAAGCCAGAAGGA +
Preference number: 5 (lower is better)
Translates to: RYLNLPPSCSVQSRR*PCLNCTVVSPKPEG
Trigger: TCCTTCTGGCTTGGGAGAGACCACTGTACAATTCAGACAAGGTCATCGCCTACTCTGTACACTACATGAAGGCGGAAGGTTTAAATAACG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CAA 90 bp GTCTGTGCATGGAGGGACGGTTTCAAGGGAAAACCCACGGAGGGCTTTTCTTTTGGCGTTGATGAAATCTaGCATGAAAATCTAGCAACT +
Preference number: 5 (lower is better)
Translates to: VCAWRDGFKGKPTEGFSFGVDEI*HENLAT
Trigger: AGTTGCTAGATTTTCATGCAAGATTTCATCAACGCC...AAAAGAAAAGCCCTCCGTGGGTTTTCCCTTGAAACCGTCCCTCCATGCACAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 90 bp TGCCATTTGAATGTATCCTTCTCCCATTTTTCAACCAGGACATTTTaGGTGAGGGAATTCCTTCTGCTTGGCACACAAATCGTGCAGTGC +
Preference number: 5 (lower is better)
Translates to: CHLNVSFSHFSTRTF*VREFLLLGTQIVQC
Trigger: GCACTGCACGATTTGTGTGCCAAGCAGAAGGAATTCCCTCACCCAAAATGTCCTGGTTGAAAAATGGGAGAAGGATACATTCAAATGGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CAA 90 bp TGCACAGAGGAGAGGTTCTGGAGAGACAGTTTGTTAACACAAAACAACAAACAAAAATCCTTCATCCGATaGCTCTCCCCTCCTGCCTTC +
Preference number: 5 (lower is better)
Translates to: CTEERFWRDSLLTQNNKQKSFIR*LSPPAF
Trigger: GAAGGCAGGAGGGGAGAGCAATCGGATGAAGGATTT...TTGTTTGTTGTTTTGTGTTAACAAACTGTCTCTCCAGAACCTCTCCTCTGTGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CAA 90 bp AAGACATCAAGATTTTCACAAAAGGCTTTGGCTCCCTGCTCATTGTCCTTCGAAGGGAATTCCTTCTGCTaGGCACACAAATCGTGCAGT +
Preference number: 5 (lower is better)
Translates to: KTSRFSQKALAPCSLSFEGNSFC*AHKSCS
Trigger: ACTGCACGATTTGTGTGCCAAGCAGAAGGAATTCCC...TTCGAAGGACAATGAGCAGGGAGCCAAAGCCTTTTGTGAAAATCTTGATGTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CAA 90 bp GTCTGTGCATGGAGGGACGGTTTCAAGGGAAAACCCACGGAGGGCTTTTCTTTTATGACCAATTTGCTGTaGTACATTTTAATCCTGCCA +
Preference number: 5 (lower is better)
Translates to: VCAWRDGFKGKPTEGFSFMTNLL*YILILP
Trigger: TGGCAGGATTAAAATGTACAACAGCAAATTGGTCAT...AAAAGAAAAGCCCTCCGTGGGTTTTCCCTTGAAACCGTCCCTCCATGCACAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CAA 90 bp TTAGGCAGTCTTCCCTCCGCTCCAGTGATTTATCTTAGAGTCCAGTCAAGCATCATTCATACTTGGTGTTaGGTTCTAGTCCTTGGACCA +
Preference number: 5 (lower is better)
Translates to: LGSLPSAPVIYLRVQSSIIHTWC*VLVLGP
Trigger: TGGTCCAAGGACTAGAACCAAACACCAAGTATGAAT...GATGCTTGACTGGACTCTAAGATAAATCACTGGAGCGGAGGGAAGACTGCCTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CAA 90 bp AAGAAAATCTTGCAAAATACATGGTTGCTTCAGGTACCAGCTCTTTACAATACAGGTGTAGTTAATGACTaGGGCGGTGGTGAACGCAGG +
Preference number: 5 (lower is better)
Translates to: KKILQNTWLLQVPALYNTGVVND*GGGERR
Trigger: CCTGCGTTCACCACCGCCCAAGTCATTAACTACACC...TGTATTGTAAAGAGCTGGTACCTGAAGCAACCATGTATTTTGCAAGATTTTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS TCA 90 bp CCACAATGTAGAAAGTATAGTTGCTGTCGGGTTCTAAGTCATCAATaGTGTAATGAGTCGTGTCGTTTCCAAGGACCACCTGATATTCCT +
Preference number: 5 (lower is better)
Translates to: PQCRKYSCCRVLSHQ*CNESCRFQGPPDIP
Trigger: AGGAATATCAGGTGGTCCTTGGAAACGACACGACTCATTACATCATTGATGACTTAGAACCCGACAGCAACTATACTTTCTACATTGTGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CAA 90 bp AAGACATCAAGATTTTCACAAAAGGCTTTGGCTCCCTGCTCATTGTCCTTCGAAACAGCAAATTCATACTaGGTGTTTGGTTCTAGTCCT +
Preference number: 5 (lower is better)
Translates to: KTSRFSQKALAPCSLSFETANSY*VFGSSP
Trigger: AGGACTAGAACCAAACACCAAGTATGAATTTGCTGT...TTCGAAGGACAATGAGCAGGGAGCCAAAGCCTTTTGTGAAAATCTTGATGTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS-3UTR CAA 90 bp AAGAAAATCTTGCAAAATACATGGTTGCTTCAGGTACCAGCTCTTTACAATACAAGACAGAACAGATCCTaGGCTGTTTTCAGCCATGCA +
Preference number: 5 (lower is better)
Translates to: KKILQNTWLLQVPALYNTRQNRS*AVFSHA
Trigger: TGCATGGCTGAAAACAGCCAAGGATCTGTTCTGTCT...TGTATTGTAAAGAGCTGGTACCTGAAGCAACCATGTATTTTGCAAGATTTTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 72 bp GTGCTCAGGCGGAAGGACAGGCGGTACAGCACCACTTaGCCCCGCCGGTACTTGGCCGGGATTGGCAGCCAG +
Preference number: 6 (lower is better)
Translates to: VLRRKDRRYSTT*PRRYLAGIGSQ
Trigger: CTGGCTGCCAATCCCGGCCAAGTACCGGCGGGGCCAAGTGGTGCTGTACCGCCTGTCCTTCCGCCTGAGCAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CAA 90 bp GGCGTTCTCAGTGCTCAGGCGGAAGGACAGGCGGTACAGCACCACTaGGCCCCGCCGGTACTTGGCCGGGATTGGCAGCCAGGAGACGAG +
Preference number: 6 (lower is better)
Translates to: GVLSAQAEGQAVQHH*APPVLGRDWQPGDE
Trigger: CTCGTCTCCTGGCTGCCAATCCCGGCCAAGTACCGGCGGGGCCAAGTGGTGCTGTACCGCCTGTCCTTCCGCCTGAGCACTGAGAACGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS TCA 72 bp CGGGGCTTTCACGCTCGTAGCCTTGGGCGTCCTGTGTaGGGTCCACACCGACGACTCTCCCAGCCCCACACG +
Preference number: 6 (lower is better)
Translates to: RGFHARSLGRPV*GPHRRLSQPHT
Trigger: CGTGTGGGGCTGGGAGAGTCGTCGGTGTGGACCTCACACAGGACGCCCAAGGCTACGAGCGTGAAAGCCCCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS GCA 72 bp TATCGCAGCCCCGCAGATGTCTGCGGAGCTGAGGTCTaGTCAGCTGGCAAGGGCTGCGCAGGGTCTCCGTGC +
Preference number: 6 (lower is better)
Translates to: YRSPADVCGAEV*SAGKGCAGSPC
Trigger: GCACGGAGACCCTGCGCAGCCCTTGCCAGCTGAGCAGACCTCAGCTCCGCAGACATCTGCGGGGCTGCGATA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CAA 72 bp AGTGCTCAGGCGGAAGGACAGGCGGTACAGCACCACTaGGCCCCGCCGGTACTTGGCCGGGATTGGCAGCCA +
Preference number: 6 (lower is better)
Translates to: SAQAEGQAVQHH*APPVLGRDWQP
Trigger: TGGCTGCCAATCCCGGCCAAGTACCGGCGGGGCCAAGTGGTGCTGTACCGCCTGTCCTTCCGCCTGAGCACT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS GCA 72 bp GTCTGCGGAGCTGAGGTCTGCTCAGCTGGCAAGGGCTaGGCAGGGTCTCCGTGCTTCTTCGGTGCAGCATCC +
Preference number: 6 (lower is better)
Translates to: VCGAEVCSAGKG*AGSPCFFGAAS
Trigger: GGATGCTGCACCGAAGAAGCACGGAGACCCTGCGCAGCCCTTGCCAGCTGAGCAGACCTCAGCTCCGCAGAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 72 bp CAGCACCACTTGGCCCCGCCGGTACTTGGCCGGGATTaGCAGCCAGGAGACGAGAATGTCGGTGGGACTTCG +
Preference number: 6 (lower is better)
Translates to: QHHLAPPVLGRD*QPGDENVGGTS
Trigger: CGAAGTCCCACCGACATTCTCGTCTCCTGGCTGCCAATCCCGGCCAAGTACCGGCGGGGCCAAGTGGTGCTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 72 bp ACAGGCGGTACAGCACCACTTGGCCCCGCCGGTACTTaGCCGGGATTGGCAGCCAGGAGACGAGAATGTCGG +
Preference number: 6 (lower is better)
Translates to: TGGTAPLGPAGT*PGLAARRRECR
Trigger: CCGACATTCTCGTCTCCTGGCTGCCAATCCCGGCCAAGTACCGGCGGGGCCAAGTGGTGCTGTACCGCCTGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CAA 90 bp AGGCGGAAGGACAGGCGGTACAGCACCACTTGGCCCCGCCGGTACTaGGCCGGGATTGGCAGCCAGGAGACGAGAATGTCGGTGGGACTT +
Preference number: 6 (lower is better)
Translates to: RRKDRRYSTTWPRRY*AGIGSQETRMSVGL
Trigger: AAGTCCCACCGACATTCTCGTCTCCTGGCTGCCAATCCCGGCCAAGTACCGGCGGGGCCAAGTGGTGCTGTACCGCCTGTCCTTCCGCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS GCA 72 bp AAACCCTCGGCAGCATATCGCAGCCCCGCAGATGTCTaGGGAGCTGAGGTCTGCTCAGCTGGCAAGGGCTGC +
Preference number: 6 (lower is better)
Translates to: KPSAAYRSPADV*GAEVCSAGKGC
Trigger: GCAGCCCTTGCCAGCTGAGCAGACCTCAGCTCCGCAGACATCTGCGGGGCTGCGATATGCTGCCGAGGGTTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 72 bp ATTCGCCTTCGCGTAGAGATGGTGGGGTGGCGGTGGTaGAGGGACCATGCGATCACGGACGGACACGCATCC +
Preference number: 6 (lower is better)
Translates to: IRLRVEMVGWRW*RDHAITDGHAS
Trigger: GGATGCGTGTCCGTCCGTGATCGCATGGTCCCTCCACCACCGCCACCCCACCATCTCTACGCGAAGGCGAAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CAA 90 bp ACAGGCGGTACAGCACCACTTGGCCCCGCCGGTACTTGGCCGGGATaGGCAGCCAGGAGACGAGAATGTCGGTGGGACTTCGACTCGTCA +
Preference number: 6 (lower is better)
Translates to: TGGTAPLGPAGTWPG*AARRRECRWDFDSS
Trigger: TGACGAGTCGAAGTCCCACCGACATTCTCGTCTCCTGGCTGCCAATCCCGGCCAAGTACCGGCGGGGCCAAGTGGTGCTGTACCGCCTGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS GCA 72 bp GTCTGCTCAGCTGGCAAGGGCTGCGCAGGGTCTCCGTaGTTCTTCGGTGCAGCATCCCCATCAGAATCGCCA +
Preference number: 6 (lower is better)
Translates to: VCSAGKGCAGSP*FFGAASPSESP
Trigger: TGGCGATTCTGATGGGGATGCTGCACCGAAGAAGCACGGAGACCCTGCGCAGCCCTTGCCAGCTGAGCAGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CAA 90 bp TCCAAATGCAGTTCAGGAGACTTCGGGGCTTTCACGCTCGTAGCCTaGGGCGTCCTGTGTGAGGTCCACACCGACGACTCTCCCAGCCCC +
Preference number: 6 (lower is better)
Translates to: SKCSSGDFGAFTLVA*GVLCEVHTDDSPSP
Trigger: GGGGCTGGGAGAGTCGTCGGTGTGGACCTCACACAGGACGCCCAAGGCTACGAGCGTGAAAGCCCCGAAGTCTCCTGAACTGCATTTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 72 bp ACTCGTGCACGGTCCCCGGGAGTTCTACAACTTGGATaGCGTTCTCAGTGCTCAGGCGGAAGGACAGGCGGT +
Preference number: 6 (lower is better)
Translates to: TRARSPGVLQLG*RSQCSGGRTGG
Trigger: ACCGCCTGTCCTTCCGCCTGAGCACTGAGAACGCCATCCAAGTTGTAGAACTCCCGGGGACCGTGCACGAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CAA 72 bp AAGCATCCTTGGGGAGGACGGCCAGCTCCACGGAGTTaGAAAAGGGCCCTTCTCCCACCTCGTTGGACGCAG +
Preference number: 6 (lower is better)
Translates to: KHPWGGRPAPRS*KRALLPPRWTQ
Trigger: CTGCGTCCAACGAGGTGGGAGAAGGGCCCTTTTCAAACTCCGTGGAGCTGGCCGTCCTCCCCAAGGATGCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CAA 90 bp GCCTTCCAGAAGGTACTCGTGCACGGTCCCCGGGAGTTCTACAACTaGGATGGCGTTCTCAGTGCTCAGGCGGAAGGACAGGCGGTACAG +
Preference number: 6 (lower is better)
Translates to: AFQKVLVHGPREFYN*DGVLSAQAEGQAVQ
Trigger: CTGTACCGCCTGTCCTTCCGCCTGAGCACTGAGAACGCCATCCAAGTTGTAGAACTCCCGGGGACCGTGCACGAGTACCTTCTGGAAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS TCA 72 bp GGAAGAATCCAAACGCTTGGGCCTCTGGTTCGACTCTaGAGCATCCTTGGGGAGGACGGCCAGCTCCACGGA +
Preference number: 6 (lower is better)
Translates to: GRIQTLGPLVRL*SILGEDGQLHG
Trigger: TCCGTGGAGCTGGCCGTCCTCCCCAAGGATGCTTCAGAGTCGAACCAGAGGCCCAAGCGTTTGGATTCTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS GCA 72 bp ATGACTTGGGCGGTGGTGAACGCAGGCCTCCTCCAGTaGAGGAAGATGGAAGAGGAGGTATTCGCCTTCGCG +
Preference number: 6 (lower is better)
Translates to: MTWAVVNAGLLQ*RKMEEEVFAFA
Trigger: CGCGAAGGCGAATACCTCCTCTTCCATCTTCCTGCACTGGAGGAGGCCTGCGTTCACCACCGCCCAAGTCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 72 bp AGGTACTCGTGCACGGTCCCCGGGAGTTCTACAACTTaGATGGCGTTCTCAGTGCTCAGGCGGAAGGACAGG +
Preference number: 6 (lower is better)
Translates to: RYSCTVPGSSTT*MAFSVLRRKDR
Trigger: CCTGTCCTTCCGCCTGAGCACTGAGAACGCCATCCAAGTTGTAGAACTCCCGGGGACCGTGCACGAGTACCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS TCA 72 bp ATCCTCCGGGCCAACGTCGTAGATCTGCAACACTCCTaGTGGCAGGGCAGTCACCCTGTCCATGGTTGTAGG +
Preference number: 6 (lower is better)
Translates to: ILRANVVDLQHS*WQGSHPVHGCR
Trigger: CCTACAACCATGGACAGGGTGACTGCCCTGCCATCAGGAGTGTTGCAGATCTACGACGTTGGCCCGGAGGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS GCA 72 bp TCCCCGGGAGTTCTACAACTTGGATGGCGTTCTCAGTaGTCAGGCGGAAGGACAGGCGGTACAGCACCACTT +
Preference number: 6 (lower is better)
Translates to: SPGVLQLGWRSQ*SGGRTGGTAPL
Trigger: AAGTGGTGCTGTACCGCCTGTCCTTCCGCCTGAGCACTGAGAACGCCATCCAAGTTGTAGAACTCCCGGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS GCA 72 bp ACACTGTCTGGCTTCAGGCCTTCCAGAAGGTACTCGTaGACGGTCCCCGGGAGTTCTACAACTTGGATGGCG +
Preference number: 6 (lower is better)
Translates to: TLSGFRPSRRYS*TVPGSSTTWMA
Trigger: CGCCATCCAAGTTGTAGAACTCCCGGGGACCGTGCACGAGTACCTTCTGGAAGGCCTGAAGCCAGACAGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS GCA 72 bp CCACACCGACGACTCTCCCAGCCCCACACGGGTAGCTaGAGTAATCCGAACCAGATAGACACTGTCTGGCTT +
Preference number: 6 (lower is better)
Translates to: PHRRLSQPHTGS*SNPNQIDTVWL
Trigger: AAGCCAGACAGTGTCTATCTGGTTCGGATTACTGCAGCTACCCGTGTGGGGCTGGGAGAGTCGTCGGTGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 72 bp CCCATGTCACTCCCTGCTGCTACAGAGGCACTGGCTTaGGATAACGGCTGGGTTCCACTCTGCGCTGTCTTA +
Preference number: 6 (lower is better)
Translates to: PMSLPAATEALA*DNGWVPLCAVL
Trigger: TAAGACAGCGCAGAGTGGAACCCAGCCGTTATCCCAAGCCAGTGCCTCTGTAGCAGCAGGGAGTGACATGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CAA 72 bp AAGGTACTCGTGCACGGTCCCCGGGAGTTCTACAACTaGGATGGCGTTCTCAGTGCTCAGGCGGAAGGACAG +
Preference number: 6 (lower is better)
Translates to: KVLVHGPREFYN*DGVLSAQAEGQ
Trigger: CTGTCCTTCCGCCTGAGCACTGAGAACGCCATCCAAGTTGTAGAACTCCCGGGGACCGTGCACGAGTACCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CAA 72 bp GCCAACAGGGTTACAGCGGATGGTGTAGTTAATGACTaGGGCGGTGGTGAACGCAGGCCTCCTCCAGTGCAG +
Preference number: 6 (lower is better)
Translates to: ANRVTADGVVND*GGGERRPPPVQ
Trigger: CTGCACTGGAGGAGGCCTGCGTTCACCACCGCCCAAGTCATTAACTACACCATCCGCTGTAACCCTGTTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CAA 90 bp GAAGAATCCAAACGCTTGGGCCTCTGGTTCGACTCTGAAGCATCCTaGGGGAGGACGGCCAGCTCCACGGAGTTTGAAAAGGGCCCTTCT +
Preference number: 6 (lower is better)
Translates to: EESKRLGLWFDSEAS*GRTASSTEFEKGPS
Trigger: AGAAGGGCCCTTTTCAAACTCCGTGGAGCTGGCCGTCCTCCCCAAGGATGCTTCAGAGTCGAACCAGAGGCCCAAGCGTTTGGATTCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS TCA 72 bp CTTAGGGGCACATCTTCTAGCGTGTTCTGTGTCACATaGTCCGACATCTGGCTGGCCCCCAGCGGCATGTAC +
Preference number: 6 (lower is better)
Translates to: LRGTSSSVFCVT*SDIWLAPSGMY
Trigger: GTACATGCCGCTGGGGGCCAGCCAGATGTCGGATCATGTGACACAGAACACGCTAGAAGATGTGCCCCTAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS TCA 72 bp CGTTCCCTGCCACCAGGTTTTCCAGCAAAGCCATGGTaGTTGCCCCTTCTCGGTGAAGAACCTGCCACTCTC +
Preference number: 6 (lower is better)
Translates to: RSLPPGFPAKPW*LPLLGEEPATL
Trigger: GAGAGTGGCAGGTTCTTCACCGAGAAGGGGCAATCACCATGGCTTTGCTGGAAAACCTGGTGGCAGGGAACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CAA 72 bp AAACGCTTGGGCCTCTGGTTCGACTCTGAAGCATCCTaGGGGAGGACGGCCAGCTCCACGGAGTTTGAAAAG +
Preference number: 6 (lower is better)
Translates to: KRLGLWFDSEAS*GRTASSTEFEK
Trigger: CTTTTCAAACTCCGTGGAGCTGGCCGTCCTCCCCAAGGATGCTTCAGAGTCGAACCAGAGGCCCAAGCGTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CAA 90 bp ATTCTGCAGGCCAACAGGGTTACAGCGGATGGTGTAGTTAATGACTaGGGCGGTGGTGAACGCAGGCCTCCTCCAGTGCAGGAAGATGGA +
Preference number: 6 (lower is better)
Translates to: ILQANRVTADGVVND*GGGERRPPPVQEDG
Trigger: TCCATCTTCCTGCACTGGAGGAGGCCTGCGTTCACCACCGCCCAAGTCATTAACTACACCATCCGCTGTAACCCTGTTGGCCTGCAGAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS TCA 72 bp CGGCTGGGTTCCACTCTGCGCTGTCTTAGAGGCGGATaGCTTCCTGGCTTTGCTTCGGTAGATCAAGATGAG +
Preference number: 6 (lower is better)
Translates to: RLGSTLRCLRGG*LPGFASVDQDE
Trigger: CTCATCTTGATCTACCGAAGCAAAGCCAGGAAGTCATCCGCCTCTAAGACAGCGCAGAGTGGAACCCAGCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 72 bp CTAGCGTGTTCTGTGTCACATGATCCGACATCTGGCTaGCCCCCAGCGGCATGTACGCCACAATGTAGAAAG +
Preference number: 6 (lower is better)
Translates to: LACSVSHDPTSG*PPAACTPQCRK
Trigger: CTTTCTACATTGTGGCGTACATGCCGCTGGGGGCCAGCCAGATGTCGGATCATGTGACACAGAACACGCTAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 72 bp GAAGAACCTGCCACTCTCCCGCAATCCAGGCCTTCCTaGAAGCATACAAGATGGTGTAGCGTGTCACCACTG +
Preference number: 6 (lower is better)
Translates to: EEPATLPQSRPS*KHTRWCSVSPL
Trigger: CAGTGGTGACACGCTACACCATCTTGTATGCTTCCAGGAAGGCCTGGATTGCGGGAGAGTGGCAGGTTCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 72 bp ACTTTGGCATTGGAAGAATCCAAACGCTTGGGCCTCTaGTTCGACTCTGAAGCATCCTTGGGGAGGACGGCC +
Preference number: 6 (lower is better)
Translates to: TLALEESKRLGL*FDSEASLGRTA
Trigger: GGCCGTCCTCCCCAAGGATGCTTCAGAGTCGAACCAGAGGCCCAAGCGTTTGGATTCTTCCAATGCCAAAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS TCA 72 bp GCCTCACGTGGTATTTTCTTCTGGGGTCCAAGCCACTaGGCGTATACAGCAGGTCACCGGTGTCTAGGAAGA +
Preference number: 6 (lower is better)
Translates to: ASRGIFFWGPSH*AYTAGHRCLGR
Trigger: TCTTCCTAGACACCGGTGACCTGCTGTATACGCTCAGTGGCTTGGACCCCAGAAGAAAATACCACGTGAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 72 bp GGTAGCTGCAGTAATCCGAACCAGATAGACACTGTCTaGCTTCAGGCCTTCCAGAAGGTACTCGTGCACGGT +
Preference number: 6 (lower is better)
Translates to: GSCSNPNQIDTV*LQAFQKVLVHG
Trigger: ACCGTGCACGAGTACCTTCTGGAAGGCCTGAAGCCAGACAGTGTCTATCTGGTTCGGATTACTGCAGCTACC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CAA 72 bp AAGGGCCCTTCTCCCACCTCGTTGGACGCAGATATCTaGACAATGTACACGTTCCCTGCCACCAGGTTTTCC +
Preference number: 6 (lower is better)
Translates to: KGPSPTSLDADI*TMYTFPATRFS
Trigger: GGAAAACCTGGTGGCAGGGAACGTGTACATTGTCAAGATATCTGCGTCCAACGAGGTGGGAGAAGGGCCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS GCA 72 bp CCTGGGGTGGTGGCCCGACAAACATACACTCCAGCATaGTGCAGCTTGACATCTGATATAATGAGGTTGCCA +
Preference number: 6 (lower is better)
Translates to: PGVVARQTYTPA*CSLTSDIMRLP
Trigger: TGGCAACCTCATTATATCAGATGTCAAGCTGCAGCATGCTGGAGTGTATGTTTGTCGGGCCACCACCCCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS GCA 72 bp AATGAAGCTGCTGGGCATCATGGGTACCAAGGACTCTaGAGTCTCTGTAGCTCTCTCCAGGTTCTTCCCCAT +
Preference number: 6 (lower is better)
Translates to: NEAAGHHGYQGL*SLCSSLQVLPH
Trigger: ATGGGGAAGAACCTGGAGAGAGCTACAGAGACTGCAGAGTCCTTGGTACCCATGATGCCCAGCAGCTTCATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 72 bp AACCAGGACATTTTGGGTGAGGGAATTCCTTCTGCTTaGCACACAAATCGTGCAGTGCCAGCTCGTGGCCTT +
Preference number: 6 (lower is better)
Translates to: NQDILGEGIPSA*HTNRAVPARGL
Trigger: AAGGCCACGAGCTGGCACTGCACGATTTGTGTGCCAAGCAGAAGGAATTCCCTCACCCAAAATGTCCTGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CAA 90 bp CCTGGGGTGGTGGCCCGACAAACATACACTCCAGCATGCTGCAGCTaGACATCTGATATAATGAGGTTGCCATTTCCAAGTACCCGAGTG +
Preference number: 6 (lower is better)
Translates to: PGVVARQTYTPACCS*TSDIMRLPFPSTRV
Trigger: CACTCGGGTACTTGGAAATGGCAACCTCATTATATCAGATGTCAAGCTGCAGCATGCTGGAGTGTATGTTTGTCGGGCCACCACCCCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CAA 90 bp GAGTTTGAAAAGGGCCCTTCTCCCACCTCGTTGGACGCAGATATCTaGACAATGTACACGTTCCCTGCCACCAGGTTTTCCAGCAAAGCC +
Preference number: 6 (lower is better)
Translates to: EFEKGPSPTSLDADI*TMYTFPATRFSSKA
Trigger: GGCTTTGCTGGAAAACCTGGTGGCAGGGAACGTGTACATTGTCAAGATATCTGCGTCCAACGAGGTGGGAGAAGGGCCCTTTTCAAACTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CAA 90 bp ATAAAACAGCTTGTAGCCCCGAATAGCGGCCGGGTCCTCTGTGTCTaGCAGCCACCTCACAGAGATGGTAGTACAATTCAGTGGTTCCAA +
Preference number: 6 (lower is better)
Translates to: IKQLVAPNSGRVLCV*QPPHRDGSTIQWFQ
Trigger: TTGGAACCACTGAATTGTACTACCATCTCTGTGAGGTGGCTGCAAGACACAGAGGACCCGGCCGCTATTCGGGGCTACAAGCTGTTTTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS GCA 72 bp GGATACAGGTCAAGGCTATGCCAACGCCTACTGCGATaGCCGTCATTGACTTTTGGTCCAGATGGTAATAGC +
Preference number: 6 (lower is better)
Translates to: GYRSRLCQRLLR*PSLTFGPDGNS
Trigger: GCTATTACCATCTGGACCAAAAGTCAATGACGGGCATCGCAGTAGGCGTTGGCATAGCCTTGACCTGTATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 72 bp CGCTGGGTCTATCTTCCGACATTACCACAGTCAGTCTaGCTCGAGACAGAACAGATCCTTGGCTGTTTTCAG +
Preference number: 6 (lower is better)
Translates to: RWVYLPTLPQSV*LETEQILGCFQ
Trigger: CTGAAAACAGCCAAGGATCTGTTCTGTCTCGAGCCAGACTGACTGTGGTAATGTCGGAAGATAGACCCAGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 72 bp TCGACATGGTCTCAGCATGAACGTTGTAAGGAGCGCTaGGTCTATCTTCCGACATTACCACAGTCAGTCTGG +
Preference number: 6 (lower is better)
Translates to: STWSQHERCKER*VYLPTLPQSVW
Trigger: CCAGACTGACTGTGGTAATGTCGGAAGATAGACCCAGCGCTCCTTACAACGTTCATGCTGAGACCATGTCGA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 72 bp ATGACGGAGGACAGGTGTATCTCATCATTGGACTCATaGGAAAACCTTCCGGAATCCCCTGTCTCATGGCTG +
Preference number: 6 (lower is better)
Translates to: MTEDRCISSLDS*ENLPESPVSWL
Trigger: CAGCCATGAGACAGGGGATTCCGGAAGGTTTTCCCATGAGTCCAATGATGAGATACACCTGTCCTCCGTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CAA 90 bp TTCCGACATTACCACAGTCAGTCTGGCTCGAGACAGAACAGATCCTaGGCTGTTTTCAGCCATGCACTGATAGATAGCATCGTCTTCCGG +
Preference number: 6 (lower is better)
Translates to: FRHYHSQSGSRQNRS*AVFSHALIDSIVFR
Trigger: CCGGAAGACGATGCTATCTATCAGTGCATGGCTGAAAACAGCCAAGGATCTGTTCTGTCTCGAGCCAGACTGACTGTGGTAATGTCGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS TCA 72 bp CCAAGTACCCGAGTGTTGAAGACATCAATGGACTTGTaGTCAAGACGGCTCCAGGAAATGATGGGTCTGGGA +
Preference number: 6 (lower is better)
Translates to: PSTRVLKTSMDL*SRRLQEMMGLG
Trigger: TCCCAGACCCATCATTTCCTGGAGCCGTCTTGATCACAAGTCCATTGATGTCTTCAACACTCGGGTACTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS TCA 72 bp CAAGGCTATGCCAACGCCTACTGCGATGCCCGTCATTaGCTTTTGGTCCAGATGGTAATAGCCGGAATAAAC +
Preference number: 6 (lower is better)
Translates to: QGYANAYCDARH*LLVQMVIAGIN
Trigger: GTTTATTCCGGCTATTACCATCTGGACCAAAAGTCAATGACGGGCATCGCAGTAGGCGTTGGCATAGCCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS GCA 72 bp GGGGTGGTGGCCCGACAAACATACACTCCAGCATGCTaGAGCTTGACATCTGATATAATGAGGTTGCCATTT +
Preference number: 6 (lower is better)
Translates to: GVVARQTYTPAC*SLTSDIMRLPF
Trigger: AAATGGCAACCTCATTATATCAGATGTCAAGCTGCAGCATGCTGGAGTGTATGTTTGTCGGGCCACCACCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS GCA 72 bp AGGGAATTCCTTCTGCTTGGCACACAAATCGTGCAGTaGCAGCTCGTGGCCTTGTTAAACTTTCAGGCCATT +
Preference number: 6 (lower is better)
Translates to: REFLLLGTQIVQ*QLVALLNFQAI
Trigger: AATGGCCTGAAAGTTTAACAAGGCCACGAGCTGGCACTGCACGATTTGTGTGCCAAGCAGAAGGAATTCCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS GCA 72 bp GTTGGACGCAGATATCTTGACAATGTACACGTTCCCTaGCACCAGGTTTTCCAGCAAAGCCATGGTGATTGC +
Preference number: 6 (lower is better)
Translates to: VGRRYLDNVHVP*HQVFQQSHGDC
Trigger: GCAATCACCATGGCTTTGCTGGAAAACCTGGTGGCAGGGAACGTGTACATTGTCAAGATATCTGCGTCCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 72 bp AACCATGTGACCTTAATGGGGCCTTCTCCGTGTGCCTaGCAATCTAAAACGACTGGGTCTTTCCTTGTGACT +
Preference number: 6 (lower is better)
Translates to: NHVTLMGPSPCA*QSKTTGSFLVT
Trigger: AGTCACAAGGAAAGACCCAGTCGTTTTAGATTGCCAGGCACACGGAGAAGGCCCCATTAAGGTCACATGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 72 bp CGGAATAAACTTTGGCATTGGAAGAATCCAAACGCTTaGGCCTCTGGTTCGACTCTGAAGCATCCTTGGGGA +
Preference number: 6 (lower is better)
Translates to: RNKLWHWKNPNA*ASGSTLKHPWG
Trigger: TCCCCAAGGATGCTTCAGAGTCGAACCAGAGGCCCAAGCGTTTGGATTCTTCCAATGCCAAAGTTTATTCCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CAA 90 bp GGATACAGGTCAAGGCTATGCCAACGCCTACTGCGATGCCCGTCATaGACTTTTGGTCCAGATGGTAATAGCCGGAATAAACTTTGGCAT +
Preference number: 6 (lower is better)
Translates to: GYRSRLCQRLLRCPS*TFGPDGNSRNKLWH
Trigger: ATGCCAAAGTTTATTCCGGCTATTACCATCTGGACCAAAAGTCAATGACGGGCATCGCAGTAGGCGTTGGCATAGCCTTGACCTGTATCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS TCA 72 bp GGATATCCTGTGGCCATACACTCTAGCACAACTGTCTaGTGTAGAGATGCGGTTACATTCTGTGGACTGGCT +
Preference number: 6 (lower is better)
Translates to: GYPVAIHSSTTV*CRDAVTFCGLA
Trigger: AGCCAGTCCACAGAATGTAACCGCATCTCTACATCAGACAGTTGTGCTAGAGTGTATGGCCACAGGATATCC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS TCA 72 bp AACCTTCCGCCTTCATGTAGTGTACAGAGTAGGCGATaGCCTTGTCTGAATTGTACAGTGGTCTCTCCCAAG +
Preference number: 6 (lower is better)
Translates to: NLPPSCSVQSRR*PCLNCTVVSPK
Trigger: CTTGGGAGAGACCACTGTACAATTCAGACAAGGTCATCGCCTACTCTGTACACTACATGAAGGCGGAAGGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CAA 72 bp TCAAGGCTATGCCAACGCCTACTGCGATGCCCGTCATaGACTTTTGGTCCAGATGGTAATAGCCGGAATAAA +
Preference number: 6 (lower is better)
Translates to: SRLCQRLLRCPS*TFGPDGNSRNK
Trigger: TTTATTCCGGCTATTACCATCTGGACCAAAAGTCAATGACGGGCATCGCAGTAGGCGTTGGCATAGCCTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CAA 90 bp TTCCTTCTGCTTGGCACACAAATCGTGCAGTGCCAGCTCGTGGCCTaGTTAAACTTTCAGGCCATTCGACAAATGAAGGAGGAGCTAATA +
Preference number: 6 (lower is better)
Translates to: FLLLGTQIVQCQLVA*LNFQAIRQMKEELI
Trigger: TATTAGCTCCTCCTTCATTTGTCGAATGGCCTGAAAGTTTAACAAGGCCACGAGCTGGCACTGCACGATTTGTGTGCCAAGCAGAAGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CAA 90 bp ACAGCTGATCCACATGCAGTCGGACAGCAAATTCATACTTGGTGTTaGGTTCTAGTCCTTGGACCAGCATGTGGGTTTCTGATGTTTGCA +
Preference number: 6 (lower is better)
Translates to: TADPHAVGQQIHTWC*VLVLGPACGFLMFA
Trigger: TGCAAACATCAGAAACCCACATGCTGGTCCAAGGACTAGAACCAAACACCAAGTATGAATTTGCTGTCCGACTGCATGTGGATCAGCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 72 bp GCAACTCCTCCTTCATGGACCTCAGTAGACACTGGATaGACTTCAAACGCAGAGATAGTTGACAATGTCAGA +
Preference number: 6 (lower is better)
Translates to: ATPPSWTSVDTG*TSNAEIVDNVR
Trigger: TCTGACATTGTCAACTATCTCTGCGTTTGAAGTCCATCCAGTGTCTACTGAGGTCCATGAAGGAGGAGTTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CAA 90 bp CTGCCATTTGAATGTATCCTTCTCCCATTTTTCAACCAGGACATTTaGGGTGAGGGAATTCCTTCTGCTTGGCACACAAATCGTGCAGTG +
Preference number: 6 (lower is better)
Translates to: LPFECILLPFFNQDI*GEGIPSAWHTNRAV
Trigger: CACTGCACGATTTGTGTGCCAAGCAGAAGGAATTCCCTCACCCAAAATGTCCTGGTTGAAAAATGGGAGAAGGATACATTCAAATGGCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 72 bp AGATGCGGTTACATTCTGTGGACTGGCTATAATGGTTaGCATGTAGAAGGATCTGGTCTCATTAGCTGCAAC +
Preference number: 6 (lower is better)
Translates to: RCGYILWTGYNG*HVEGSGLISCN
Trigger: GTTGCAGCTAATGAGACCAGATCCTTCTACATGCCAACCATTATAGCCAGTCCACAGAATGTAACCGCATCT
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CAA 72 bp CCAGCATGCTGCAGCTTGACATCTGATATAATGAGGTaGCCATTTCCAAGTACCCGAGTGTTGAAGACATCA +
Preference number: 6 (lower is better)
Translates to: PACCSLTSDIMR*PFPSTRVLKTS
Trigger: TGATGTCTTCAACACTCGGGTACTTGGAAATGGCAACCTCATTATATCAGATGTCAAGCTGCAGCATGCTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CAA 90 bp ACATACACTCCAGCATGCTGCAGCTTGACATCTGATATAATGAGGTaGCCATTTCCAAGTACCCGAGTGTTGAAGACATCAATGGACTTG +
Preference number: 6 (lower is better)
Translates to: TYTPACCSLTSDIMR*PFPSTRVLKTSMDL
Trigger: CAAGTCCATTGATGTCTTCAACACTCGGGTACTTGGAAATGGCAACCTCATTATATCAGATGTCAAGCTGCAGCATGCTGGAGTGTATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CAA 90 bp CTATTAAATTCCCATGTTATGACTGCAGGCGGCGTTGATGAAATCTaGCATGAAAATCTAGCAACTCCTCCTTCATGGACCTCAGTAGAC +
Preference number: 6 (lower is better)
Translates to: LLNSHVMTAGGVDEI*HENLATPPSWTSVD
Trigger: GTCTACTGAGGTCCATGAAGGAGGAGTTGCTAGATTTTCATGCAAGATTTCATCAACGCCGCCTGCAGTCATAACATGGGAATTTAATAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS TCA 72 bp AGAAAGTATAGTTGCTGTCGGGTTCTAAGTCATCAATaGTGTAATGAGTCGTGTCGTTTCCAAGGACCACCT +
Preference number: 6 (lower is better)
Translates to: RKYSCCRVLSHQ*CNESCRFQGPP
Trigger: AGGTGGTCCTTGGAAACGACACGACTCATTACATCATTGATGACTTAGAACCCGACAGCAACTATACTTTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 72 bp AATGTATCCTTCTCCCATTTTTCAACCAGGACATTTTaGGTGAGGGAATTCCTTCTGCTTGGCACACAAATC +
Preference number: 6 (lower is better)
Translates to: NVSFSHFSTRTF*VREFLLLGTQI
Trigger: GATTTGTGTGCCAAGCAGAAGGAATTCCCTCACCCAAAATGTCCTGGTTGAAAAATGGGAGAAGGATACATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CAA 72 bp GAATGTATCCTTCTCCCATTTTTCAACCAGGACATTTaGGGTGAGGGAATTCCTTCTGCTTGGCACACAAAT +
Preference number: 6 (lower is better)
Translates to: ECILLPFFNQDI*GEGIPSAWHTN
Trigger: ATTTGTGTGCCAAGCAGAAGGAATTCCCTCACCCAAAATGTCCTGGTTGAAAAATGGGAGAAGGATACATTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9
CDS CCA 72 bp ACCTCACTGATGTATAGAGAGCCGTTAGATAGAACCTaGATCCGTTTATTTTCGGACAATTTTGCTCCATTT +
Preference number: 6 (lower is better)
Translates to: TSLMYREPLDRT*IRLFSDNFAPF
Trigger: AAATGGAGCAAAATTGTCCGAAAATAAACGGATCCAGGTTCTATCTAACGGCTCTCTATACATCAGTGAGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055535.9