Pregenerated sensors for PRSS59 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029883

Ensembl transcript IDs: ENSMUST00000031935.10, ENSMUST00000122181.8, ENSMUST00000136499.2

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	ATCGTATCATTTTTAAGATCCATCTTGCATAGGGATGAATTTCAGTaGAGAAGCCTTTGCTTCCATTGGCTACACTTGCTTTCCCCCAGG	+
Preference number: 5 (lower is better) Translates to: IVSFLRSILHRDEFQ*RSLCFHWLHLLSPR Trigger: CCTGGGGGAAAGCAAGTGTAGCCAATGGAAGCAAAGGCTTCTTCACTGAAATTCATCCCTATGCAAGATGGATCTTAAAAATGATACGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000031935.10 ENSMUST00000122181.8
CDS GCA 90 bp	GTAGTTATTCCAGGTCCATGTTGGTATGAAGCAGGATTCATTAAATaGCATTGGTTCCATAGCTATGGCTATAGTTCCCACATACATGTT	+
Preference number: 5 (lower is better) Translates to: VVIPGPCWYEAGFIK*HWFHSYGYSSHIHV Trigger: AACATGTATGTGGGAACTATAGCCATAGCTATGGAACCAATGGCATTTAATGAATCCTGCTTCATACCAACATGGACCTGGAATAACTAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031935.10 ENSMUST00000122181.8 ENSMUST00000136499.2
CDS CCA 90 bp	ATTCCAGGTCCATGTTGGTATGAAGCAGGATTCATTAAATGCCATTaGTTCCATAGCTATGGCTATAGTTCCCACATACATGTTGATAGT	+
Preference number: 5 (lower is better) Translates to: IPGPCWYEAGFIKCH*FHSYGYSSHIHVDS Trigger: ACTATCAACATGTATGTGGGAACTATAGCCATAGCTATGGAACCAATGGCATTTAATGAATCCTGCTTCATACCAACATGGACCTGGAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031935.10 ENSMUST00000122181.8 ENSMUST00000136499.2
CDS GCA 72 bp	TTCAGTGAAGAAGCCTTTGCTTCCATTGGCTACACTTaGTTTCCCCCAGGACAATATTCCATGCACCCTCCC	+
Preference number: 6 (lower is better) Translates to: FSEEAFASIGYT*FPPGQYSMHPP Trigger: GGGAGGGTGCATGGAATATTGTCCTGGGGGAAAGCAAGTGTAGCCAATGGAAGCAAAGGCTTCTTCACTGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031935.10 ENSMUST00000122181.8
CDS CCA 72 bp	CCACTGAGGGTCAATGAGAGTCCCAACACAAGGCTCTaGGCTGGACTGCAGATAGACCATATAAGGAACATT	+
Preference number: 6 (lower is better) Translates to: PLRVNESPNTRL*AGLQIDHIRNI Trigger: AATGTTCCTTATATGGTCTATCTGCAGTCCAGCCCAGAGCCTTGTGTTGGGACTCTCATTGACCCTCAGTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031935.10 ENSMUST00000122181.8 ENSMUST00000136499.2
CDS GCA 72 bp	CCAGGTCCATGTTGGTATGAAGCAGGATTCATTAAATaGCATTGGTTCCATAGCTATGGCTATAGTTCCCAC	+
Preference number: 6 (lower is better) Translates to: PGPCWYEAGFIK*HWFHSYGYSSH Trigger: GTGGGAACTATAGCCATAGCTATGGAACCAATGGCATTTAATGAATCCTGCTTCATACCAACATGGACCTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031935.10 ENSMUST00000122181.8 ENSMUST00000136499.2
CDS CCA 72 bp	CCATGTTGGTATGAAGCAGGATTCATTAAATGCCATTaGTTCCATAGCTATGGCTATAGTTCCCACATACAT	+
Preference number: 6 (lower is better) Translates to: PCWYEAGFIKCH*FHSYGYSSHIH Trigger: ATGTATGTGGGAACTATAGCCATAGCTATGGAACCAATGGCATTTAATGAATCCTGCTTCATACCAACATGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031935.10 ENSMUST00000122181.8 ENSMUST00000136499.2
CDS CAA 72 bp	GGTTCCATAGCTATGGCTATAGTTCCCACATACATGTaGATAGTAGCAGGATATGAGAGTTTTATCAGCATC	+
Preference number: 6 (lower is better) Translates to: GSIAMAIVPTYM*IVAGYESFISI Trigger: GATGCTGATAAAACTCTCATATCCTGCTACTATCAACATGTATGTGGGAACTATAGCCATAGCTATGGAACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031935.10 ENSMUST00000122181.8 ENSMUST00000136499.2
CDS TCA 72 bp	TTTTTAAGATCCATCTTGCATAGGGATGAATTTCAGTaGAGAAGCCTTTGCTTCCATTGGCTACACTTGCTT	+
Preference number: 6 (lower is better) Translates to: FLRSILHRDEFQ*RSLCFHWLHLL Trigger: AAGCAAGTGTAGCCAATGGAAGCAAAGGCTTCTTCACTGAAATTCATCCCTATGCAAGATGGATCTTAAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031935.10 ENSMUST00000122181.8
CDS CAA 72 bp	CTTGTTTCTGTTGATGAAGAGTGTCCAAACAGTCACTaGGGGAAAGAGAATACTCATTTATCCATGTCAAGA	+
Preference number: 6 (lower is better) Translates to: LVSVDEECPNSH*GKENTHLSMSR Trigger: TCTTGACATGGATAAATGAGTATTCTCTTTCCCCAAGTGACTGTTTGGACACTCTTCATCAACAGAAACAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031935.10 ENSMUST00000122181.8
CDS CAA 90 bp	AATGCCATTGGTTCCATAGCTATGGCTATAGTTCCCACATACATGTaGATAGTAGCAGGATATGAGAGTTTTATCAGCATCAAGTCATTT	+
Preference number: 6 (lower is better) Translates to: NAIGSIAMAIVPTYM*IVAGYESFISIKSF Trigger: AAATGACTTGATGCTGATAAAACTCTCATATCCTGCTACTATCAACATGTATGTGGGAACTATAGCCATAGCTATGGAACCAATGGCATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031935.10 ENSMUST00000122181.8 ENSMUST00000136499.2
CDS CAA 90 bp	TTCTTGTTTCTTGTTTCTGTTGATGAAGAGTGTCCAAACAGTCACTaGGGGAAAGAGAATACTCATTTATCCATGTCAAGATGTCAGGAT	+
Preference number: 6 (lower is better) Translates to: FLFLVSVDEECPNSH*GKENTHLSMSRCQD Trigger: ATCCTGACATCTTGACATGGATAAATGAGTATTCTCTTTCCCCAAGTGACTGTTTGGACACTCTTCATCAACAGAAACAAGAAACAAGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031935.10 ENSMUST00000122181.8
CDS CCA 72 bp	TTGTTTCTGTTGATGAAGAGTGTCCAAACAGTCACTTaGGGAAAGAGAATACTCATTTATCCATGTCAAGAT	+
Preference number: 6 (lower is better) Translates to: LFLLMKSVQTVT*GKRILIYPCQD Trigger: ATCTTGACATGGATAAATGAGTATTCTCTTTCCCCAAGTGACTGTTTGGACACTCTTCATCAACAGAAACAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031935.10 ENSMUST00000122181.8
CDS CAA 72 bp	TATTCTTCTGAATTGTTATATTCTTTCAGAACGGCTTaGGGAGTATTAGCTACTGCGAGACTTAAGAGAGTG	+
Preference number: 6 (lower is better) Translates to: YSSELLYSFRTA*GVLATARLKRV Trigger: CACTCTCTTAAGTCTCGCAGTAGCTAATACTCCCAAAGCCGTTCTGAAAGAATATAACAATTCAGAAGAATA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031935.10 ENSMUST00000122181.8 ENSMUST00000136499.2
CDS CAA 90 bp	TCTGGTAAGTATTCTTCTGAATTGTTATATTCTTTCAGAACGGCTTaGGGAGTATTAGCTACTGCGAGACTTAAGAGAGTGAAGATGAAA	+
Preference number: 6 (lower is better) Translates to: SGKYSSELLYSFRTA*GVLATARLKRVKMK Trigger: TTTCATCTTCACTCTCTTAAGTCTCGCAGTAGCTAATACTCCCAAAGCCGTTCTGAAAGAATATAACAATTCAGAAGAATACTTACCAGA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031935.10 ENSMUST00000122181.8 ENSMUST00000136499.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu